Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3325

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 460

Length: 767
ACGTcount: A:0.22, C:0.17, G:0.08, T:0.25

Warning! 220 characters in sequence are not A, C, G, or T


Found at i:647 original size:47 final size:49

Alignment explanation


    Indices: 543--655  Score: 149
    Period size: 47  Copynumber: 2.3  Consensus size: 49

        533 NNNNTCCAAC

                        * *                                 *
        543 TATGGTCTTACATGTAATCACATATCACATACTGATGCCATAGCCCAGC
          1 TATGGTCTTACACGGAATCACATATCACATACTGATGCCATAGCCCAGA

               *               *                      **     
        592 TATAGTCTTACACGGAATCGCATATCACA-A-TGATGCCATATTCCAGA
          1 TATGGTCTTACACGGAATCACATATCACATACTGATGCCATAGCCCAGA

                             
        639 TATGGTCTTACACGGAA
          1 TATGGTCTTACACGGAA

        656 ATTTCATAAT


Statistics
Matches: 56,  Mismatches: 8, Indels: 2
        0.85            0.12        0.03

Matches are distributed among these distances:
  47   30  0.54
  48    1  0.02
  49   25  0.45

ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28


Consensus pattern (49 bp):   
TATGGTCTTACACGGAATCACATATCACATACTGATGCCATAGCCCAGA

Done.