Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2217

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 620

Length: 1034
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40


Found at i:978 original size:126 final size:126

Alignment explanation


    Indices: 753--1009  Score: 498
    Period size: 126  Copynumber: 2.0  Consensus size: 126

        743 ACTCTATATA

                                                                             
        753 TTTGTAAACTTGTTCATTTCCTTTCTCTTTAAAAATTTTGTAAACTCCCTCGTTCGTTTTTCCCT
          1 TTTGTAAACTTGTTCATTTCCTTTCTCTTTAAAAATTTTGTAAACTCCCTCGTTCGTTTTTCCCT

                                                                          
        818 TGTTCAATTCCTTTCTCTATTGTTTCATTTTCATAATTGCAATTTCCAAC-TTTATTCCTCT
         66 TGTTCAATTCCTTTCTCTATTGTTTCATTTTCATAATTGCAATTTCC-ACTTTTATTCCTCT

                                                                             
        879 TTTGTAAACTTGTTCATTTCCTTTCTCTTTAAAAATTTTGTAAACTCCCTCGTTCGTTTTTCCCT
          1 TTTGTAAACTTGTTCATTTCCTTTCTCTTTAAAAATTTTGTAAACTCCCTCGTTCGTTTTTCCCT

                                                                         
        944 TGTTCAATTCCTTTCTCTATTGTTTCATTTTCATAATTGCAATTTCCACTTTTATTCCTCT
         66 TGTTCAATTCCTTTCTCTATTGTTTCATTTTCATAATTGCAATTTCCACTTTTATTCCTCT

                 
       1005 TTTGT
          1 TTTGT

       1010 CGTTTCCCTA


Statistics
Matches: 130,  Mismatches: 0, Indels: 2
        0.98            0.00        0.02

Matches are distributed among these distances:
 125    2  0.02
 126  128  0.98

ACGTcount: A:0.18, C:0.23, G:0.07, T:0.53


Consensus pattern (126 bp):   
TTTGTAAACTTGTTCATTTCCTTTCTCTTTAAAAATTTTGTAAACTCCCTCGTTCGTTTTTCCCT
TGTTCAATTCCTTTCTCTATTGTTTCATTTTCATAATTGCAATTTCCACTTTTATTCCTCT
Done.