Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4072

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 356

Length: 594
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.27

Warning! 46 characters in sequence are not A, C, G, or T


Found at i:82 original size:23 final size:25

Alignment explanation


    Indices: 36--88  Score: 65
    Period size: 24  Copynumber: 2.2  Consensus size: 25

         26 TCATTTTGTT

                      *              
         36 CAAAATAAATCAATTTATAAAAAA-
          1 CAAAATAAATAAATTTATAAAAAAG

                            *  *     
         60 CAAAATAAA-AAATTTTTACAAAAG
          1 CAAAATAAATAAATTTATAAAAAAG

                 
         84 CAAAA
          1 CAAAA

         89 CGGCGTCGTT


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  23   11  0.44
  24   14  0.56

ACGTcount: A:0.66, C:0.09, G:0.02, T:0.23


Consensus pattern (25 bp):   
CAAAATAAATAAATTTATAAAAAAG

Found at i:467 original size:26 final size:26

Alignment explanation


    Indices: 436--485  Score: 100
    Period size: 26  Copynumber: 1.9  Consensus size: 26

        426 AAAACGCCGC

                                      
        436 AAAAATAAATCAATTTATAAAAAACA
          1 AAAAATAAATCAATTTATAAAAAACA

                                    
        462 AAAAATAAATCAATTTATAAAAAA
          1 AAAAATAAATCAATTTATAAAAAA

        486 GCAATAATGG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24


Consensus pattern (26 bp):   
AAAAATAAATCAATTTATAAAAAACA
Done.