Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1671

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1422
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28


Found at i:1380 original size:6 final size:6

Alignment explanation


    Indices: 1364--1422  Score: 73
    Period size: 6  Copynumber: 9.8  Consensus size: 6

       1354 AGAATGTAGT

                *     *      *       *     *                       
       1364 TCTGCC TCTCGC TCTCGC TCTGCC TCTCGC TCTGGC TCTGGC TCTGGC
          1 TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC

                        
       1412 TCTGGC TCTGG
          1 TCTGGC TCTGG


Statistics
Matches: 46,  Mismatches: 7, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   6   46  1.00

ACGTcount: A:0.00, C:0.41, G:0.25, T:0.34


Consensus pattern (6 bp):   
TCTGGC

Found at i:1422 original size:18 final size:18

Alignment explanation


    Indices: 1364--1421  Score: 89
    Period size: 18  Copynumber: 3.2  Consensus size: 18

       1354 AGAATGTAGT

                           *  
       1364 TCTGCCTCTCGCTCTCGC
          1 TCTGCCTCTCGCTCTGGC

                              
       1382 TCTGCCTCTCGCTCTGGC
          1 TCTGCCTCTCGCTCTGGC

                *    *        
       1400 TCTGGCTCTGGCTCTGGC
          1 TCTGCCTCTCGCTCTGGC

                
       1418 TCTG
          1 TCTG

       1422 G


Statistics
Matches: 37,  Mismatches: 3, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  18   37  1.00

ACGTcount: A:0.00, C:0.41, G:0.24, T:0.34


Consensus pattern (18 bp):   
TCTGCCTCTCGCTCTGGC
Done.