Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35726063
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1821929 characters in sequence are not A, C, G, or T
File 100 of 109
Found at i:31870193 original size:105 final size:101
Alignment explanation
Indices: 31869984--31870200 Score: 285
Period size: 105 Copynumber: 2.1 Consensus size: 101
31869974 AATTGACGGA
*
31869984 TAAGACCATGGTTGGACCATGGGAATGTTTAAATGTAAGACCATAGCTGGGCTATGGCATTTTAA
1 TAAGACCATGGTTGGACCATGGGAATGTTTAAATGTAAGACCATAGCTGGGCTATGGCATTCTAA
* **
31870049 TGAAAAGACCATAATTGGGTTATGACACCTTGAACG
66 TGAAAAGACCATAACTGGGTTATGACACCTCAAACG
* *
31870085 TAAGACCATGGTTGGACCATGGCAGTATAG-TTACATGTGTAAGACCATAGCTGGGCTATGGCAT
1 TAAGACCATGGTTGGACCATGG--GAAT-GTTTA-A-ATGTAAGACCATAGCTGGGCTATGGCAT
* * *
31870149 TCTAATGATAAGACCATAACTGGGTTATGGCA-CTACAAATG
61 TCTAATGAAAAGACCATAACTGGGTTATGACACCT-CAAACG
31870190 TAAGACCATGG
1 TAAGACCATGG
31870201 CAGGGCCATG
Statistics
Matches: 101, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
101 22 0.22
103 6 0.06
104 4 0.04
105 69 0.68
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGGAATGTTTAAATGTAAGACCATAGCTGGGCTATGGCATTCTAA
TGAAAAGACCATAACTGGGTTATGACACCTCAAACG
Found at i:31870210 original size:105 final size:105
Alignment explanation
Indices: 31870017--31870213 Score: 288
Period size: 105 Copynumber: 1.9 Consensus size: 105
31870007 AATGTTTAAA
* * **
31870017 TGTAAGACCATAGCTGGGCTATGGCATTTTAATGAAAAGACCATAATTGGGTTATGACACCTTGA
1 TGTAAGACCATAGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGGGTTATGACACCTCAA
**
31870082 ACGTAAGACCATGGTTGGACCATGGCAGTATAGTTACATG
66 ACGTAAGACCATGGCAGGACCATGGCAGTATAGTTACATG
* *
31870122 TGTAAGACCATAGCTGGGCTATGGCATTCTAATGATAAGACCATAACTGGGTTATGGCA-CTACA
1 TGTAAGACCATAGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGGGTTATGACACCT-CA
* *
31870186 AATGTAAGACCATGGCAGGGCCATGGCA
65 AACGTAAGACCATGGCAGGACCATGGCA
31870214 ATTGCATGTG
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
104 2 0.02
105 79 0.98
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (105 bp):
TGTAAGACCATAGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGGGTTATGACACCTCAA
ACGTAAGACCATGGCAGGACCATGGCAGTATAGTTACATG
Found at i:31874806 original size:3 final size:3
Alignment explanation
Indices: 31874759--31874817 Score: 50
Period size: 3 Copynumber: 20.0 Consensus size: 3
31874749 ATTATGCTAC
* * * **
31874759 ATT ATT -TT ATT -TT ATT TTT ATTT ATT GTT ATC ATT ATT AAC ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
31874803 ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
31874818 TCATTCATAC
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
2 4 0.09
3 36 0.84
4 3 0.07
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:31874873 original size:26 final size:25
Alignment explanation
Indices: 31874823--31874871 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
31874813 TTATTTCATT
*
31874823 CATACATACGCATATTTTATGTATAA
1 CATACATA-GCATATTTTATATATAA
*
31874849 CATACAT-GCATATTTAATATATA
1 CATACATAGCATATTTTATATATA
31874872 TATTTTAAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
26 7 0.33
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (25 bp):
CATACATAGCATATTTTATATATAA
Found at i:31876326 original size:92 final size:92
Alignment explanation
Indices: 31876169--31876353 Score: 370
Period size: 92 Copynumber: 2.0 Consensus size: 92
31876159 AAAAAAGTTT
31876169 TAAAAAAAAAAATTCCCTTTGCACTCATTGATGTTTTATCATGGTACTTTGGCAACTTTGCATTT
1 TAAAAAAAAAAATTCCCTTTGCACTCATTGATGTTTTATCATGGTACTTTGGCAACTTTGCATTT
31876234 TACCCTTAAGTGGGAGCGAGAAACTAG
66 TACCCTTAAGTGGGAGCGAGAAACTAG
31876261 TAAAAAAAAAAATTCCCTTTGCACTCATTGATGTTTTATCATGGTACTTTGGCAACTTTGCATTT
1 TAAAAAAAAAAATTCCCTTTGCACTCATTGATGTTTTATCATGGTACTTTGGCAACTTTGCATTT
31876326 TACCCTTAAGTGGGAGCGAGAAACTAG
66 TACCCTTAAGTGGGAGCGAGAAACTAG
31876353 T
1 T
31876354 CCTTCGTGAG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 93 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (92 bp):
TAAAAAAAAAAATTCCCTTTGCACTCATTGATGTTTTATCATGGTACTTTGGCAACTTTGCATTT
TACCCTTAAGTGGGAGCGAGAAACTAG
Found at i:31880845 original size:21 final size:19
Alignment explanation
Indices: 31880821--31880860 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
31880811 AAATGATGTG
31880821 AAAAAATGAAAAGATGAAAAT
1 AAAAAATGAAAA-AT-AAAAT
31880842 AAAAAATGAAAAATAAAAT
1 AAAAAATGAAAAATAAAAT
31880861 GGAGAGGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 2 0.11
21 12 0.63
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (19 bp):
AAAAAATGAAAAATAAAAT
Found at i:31880846 original size:14 final size:14
Alignment explanation
Indices: 31880822--31880859 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
31880812 AATGATGTGA
*
31880822 AAAAATGAAAAGATG
1 AAAAAT-AAAAAATG
31880837 -AAAATAAAAAATG
1 AAAAATAAAAAATG
31880850 AAAAATAAAA
1 AAAAATAAAA
31880860 TGGAGAGGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (14 bp):
AAAAATAAAAAATG
Found at i:31882259 original size:50 final size:50
Alignment explanation
Indices: 31882105--31882261 Score: 163
Period size: 50 Copynumber: 3.1 Consensus size: 50
31882095 TAGATTTTAC
31882105 TTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGT
1 TTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGT
* * * * ** * * * * * ***
31882155 TTCCCT-GATATTGCAATTAAAAAGATTGAAGCCACAATGGTGGATCTTAC
1 TTCCTTAG-CAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGT
*
31882205 TTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGTTCTGGT
1 TTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGT
31882255 TTCCTTA
1 TTCCTTA
31882262 ATATTGCANN
Statistics
Matches: 76, Mismatches: 29, Indels: 4
0.70 0.27 0.04
Matches are distributed among these distances:
49 1 0.01
50 74 0.97
51 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (50 bp):
TTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGT
Found at i:31895613 original size:60 final size:61
Alignment explanation
Indices: 31895480--31895616 Score: 145
Period size: 60 Copynumber: 2.3 Consensus size: 61
31895470 GACAAAATTG
* * * ***
31895480 AATAGTTGAGTGACCATTTTGTAACTTTTCATAGTTTAGGTGACCAAAAAAGAAATTTACT
1 AATAGTTGGGTGACTATTTTGTAACTTTTCATAGGTTAGGTGACCAAAAAAGAAAAAAACT
* * *
31895541 AATAATTAGGTGACTATTTTGTAACTTTTCA-CGGTT-GGATGACCAAAAAAGAAAAAAAGC-
1 AATAGTTGGGTGACTATTTTGTAACTTTTCATAGGTTAGG-TGACCAAAAAAGAAAAAAA-CT
*
31895601 CATAGTTGGGTGACTA
1 AATAGTTGGGTGACTA
31895617 GTTTATCCTA
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
59 2 0.03
60 32 0.52
61 28 0.45
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (61 bp):
AATAGTTGGGTGACTATTTTGTAACTTTTCATAGGTTAGGTGACCAAAAAAGAAAAAAACT
Found at i:31902764 original size:15 final size:15
Alignment explanation
Indices: 31902746--31902776 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
31902736 ATTCATATGG
31902746 AAAAAAAAAAGAAAA
1 AAAAAAAAAAGAAAA
*
31902761 AAAAGAAAAAGAAAA
1 AAAAAAAAAAGAAAA
31902776 A
1 A
31902777 GAAGCAGGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAGAAAA
Found at i:31906768 original size:7 final size:7
Alignment explanation
Indices: 31906756--31906786 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
31906746 TTTACTCTTC
31906756 TTTTAAG
1 TTTTAAG
31906763 TTTTAAG
1 TTTTAAG
31906770 TTTTAAG
1 TTTTAAG
31906777 TTTTAAG
1 TTTTAAG
31906784 TTT
1 TTT
31906787 GACCATTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (7 bp):
TTTTAAG
Found at i:31916955 original size:73 final size:73
Alignment explanation
Indices: 31916814--31916959 Score: 211
Period size: 73 Copynumber: 2.0 Consensus size: 73
31916804 CAGAAAACAG
* * * * * **
31916814 GAAATTTATGTATGTTTATCAAGGTGGTCAGTTCTGCATCGATTCCAATTGTATTAATCAGTGCA
1 GAAATTTATGTATATTTATCAAGGTGGTCAATTCTACATCGATTCCAACTGTATTAATCAATAAA
31916879 TATTGTTC
66 TATTGTTC
* *
31916887 GAAATTTATGTATATTTATTAAGGTGGTCAATTCTACATCGATTCCAACTGTATTGATCAATAAA
1 GAAATTTATGTATATTTATCAAGGTGGTCAATTCTACATCGATTCCAACTGTATTAATCAATAAA
31916952 TATTGTTC
66 TATTGTTC
31916960 TAATGGTAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
73 64 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.41
Consensus pattern (73 bp):
GAAATTTATGTATATTTATCAAGGTGGTCAATTCTACATCGATTCCAACTGTATTAATCAATAAA
TATTGTTC
Found at i:31919680 original size:15 final size:16
Alignment explanation
Indices: 31919652--31919684 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
31919642 GGACTGCAAC
*
31919652 AAAAGGAAGTAAAGAA
1 AAAAGGAAGAAAAGAA
31919668 AAAAGGAA-AAAAGAA
1 AAAAGGAAGAAAAGAA
31919683 AA
1 AA
31919685 TAGTTTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (16 bp):
AAAAGGAAGAAAAGAA
Found at i:31924051 original size:29 final size:29
Alignment explanation
Indices: 31924019--31924081 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
31924009 TCTCCTGAGC
*
31924019 AAACCCTTAAAATAATGACTAAGAAATGT
1 AAACACTTAAAATAATGACTAAGAAATGT
31924048 AAACACTTAAAATAATGACTAAGAAATGT
1 AAACACTTAAAATAATGACTAAGAAATGT
31924077 AAACA
1 AAACA
31924082 TACTCTTAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.56, C:0.13, G:0.10, T:0.22
Consensus pattern (29 bp):
AAACACTTAAAATAATGACTAAGAAATGT
Found at i:31924333 original size:64 final size:64
Alignment explanation
Indices: 31924232--31924360 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
31924222 GAGATTGCCT
31924232 ACGTAACAACTAAAAGACAATAAGCAGTTATCTGAAGAACGGCATTTCTTTTGTCATTAACACA
1 ACGTAACAACTAAAAGACAATAAGCAGTTATCTGAAGAACGGCATTTCTTTTGTCATTAACACA
31924296 ACGTAACAACTAAAAGACAATAAGCAGTTATCTGAAGAACGGCATTTCTTTTGTCATTAACACA
1 ACGTAACAACTAAAAGACAATAAGCAGTTATCTGAAGAACGGCATTTCTTTTGTCATTAACACA
31924360 A
1 A
31924361 TTAACTTCCT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (64 bp):
ACGTAACAACTAAAAGACAATAAGCAGTTATCTGAAGAACGGCATTTCTTTTGTCATTAACACA
Found at i:31931755 original size:13 final size:12
Alignment explanation
Indices: 31931737--31931799 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
31931727 TAATAAATAC
31931737 TAAAAATTTATTT
1 TAAAAA-TTATTT
31931750 TAAAAATTA---
1 TAAAAATTATTT
31931759 -AAAAATATATTTT
1 TAAAAAT-TA-TTT
*
31931772 TAAAAAGTATTT
1 TAAAAATTATTT
31931784 TAAAAA-TATTT
1 TAAAAATTATTT
31931795 TAAAA
1 TAAAA
31931800 TTTAAAAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 14
0.74 0.02 0.24
Matches are distributed among these distances:
8 6 0.14
9 2 0.05
11 10 0.23
12 12 0.28
13 8 0.19
14 5 0.12
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (12 bp):
TAAAAATTATTT
Found at i:31931793 original size:11 final size:11
Alignment explanation
Indices: 31931769--31931839 Score: 71
Period size: 11 Copynumber: 6.7 Consensus size: 11
31931759 AAAAATATAT
31931769 TTTTAAAAAGTA
1 TTTTAAAAA-TA
31931781 TTTTAAAAATA
1 TTTTAAAAATA
31931792 TTTT--AAA-A
1 TTTTAAAAATA
31931800 -TTTAAAAATA
1 TTTTAAAAATA
* *
31931810 -ATAAAAAAGTA
1 TTTTAAAAA-TA
31931821 TTTTAAAAATA
1 TTTTAAAAATA
31931832 TTTTAAAA
1 TTTTAAAA
31931840 TTAAAAAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
7 3 0.06
8 1 0.02
9 6 0.12
10 7 0.14
11 18 0.36
12 15 0.30
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (11 bp):
TTTTAAAAATA
Found at i:31931845 original size:17 final size:17
Alignment explanation
Indices: 31931823--31931869 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
31931813 AAAAAGTATT
*
31931823 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
*
31931840 TTAAAAAAATTTAAAAA
1 TTAAAAATATTTAAAAA
* *
31931857 ATAAATATATTTA
1 TTAAAAATATTTA
31931870 TTACCCGGCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:31931855 original size:40 final size:41
Alignment explanation
Indices: 31931745--31931857 Score: 151
Period size: 40 Copynumber: 2.7 Consensus size: 41
31931735 ACTAAAAATT
*
31931745 TATTTTAAAAATTAAAAAATATATTTTTAAAAAGTATTTTAAAAA
1 TATTTT-AAAATT-AAAAATA-A-TTTAAAAAAGTATTTTAAAAA
31931790 TATTTTAAAATTTAAAAATAA--TAAAAAAGTATTTTAAAAA
1 TATTTTAAAA-TTAAAAATAATTTAAAAAAGTATTTTAAAAA
31931830 TATTTTAAAATTAAAAA-AATTTAAAAAA
1 TATTTTAAAATTAAAAATAATTTAAAAAA
31931858 TAAATATATT
Statistics
Matches: 64, Mismatches: 1, Indels: 11
0.84 0.01 0.14
Matches are distributed among these distances:
38 2 0.03
39 7 0.11
40 35 0.55
43 1 0.02
44 11 0.17
45 8 0.12
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (41 bp):
TATTTTAAAATTAAAAATAATTTAAAAAAGTATTTTAAAAA
Found at i:31935633 original size:23 final size:23
Alignment explanation
Indices: 31935545--31935635 Score: 65
Period size: 23 Copynumber: 3.8 Consensus size: 23
31935535 GCCATGATAA
* * *
31935545 GGAAGCTCATGCAAGCCAATAACG
1 GGAAGCTCAAGAAAGCC-ATATCG
* *
31935569 GGAAGCTCCAGATAGCCATAGATCG
1 GGAAGCTCAAGAAAGCCAT--ATCG
** **
31935594 GGAAATTCAAGCGAGCCATATCG
1 GGAAGCTCAAGAAAGCCATATCG
*
31935617 GGAAGCTCTAGAAAGCCAT
1 GGAAGCTCAAGAAAGCCAT
31935636 TAATCAGAAA
Statistics
Matches: 50, Mismatches: 15, Indels: 5
0.71 0.21 0.07
Matches are distributed among these distances:
23 20 0.40
24 13 0.26
25 17 0.34
ACGTcount: A:0.35, C:0.23, G:0.26, T:0.15
Consensus pattern (23 bp):
GGAAGCTCAAGAAAGCCATATCG
Found at i:31935685 original size:26 final size:26
Alignment explanation
Indices: 31935617--31935704 Score: 83
Period size: 26 Copynumber: 3.4 Consensus size: 26
31935607 AGCCATATCG
31935617 GGAAGCTC-TAGAAAGCCATTAATCA
1 GGAAGCTCATAGAAAGCCATTAATCA
* * *
31935642 GAAAGCTCACA-AAGAGCCTTTAATCA
1 GGAAGCTCATAGAA-AGCCATTAATCA
* *
31935668 GGAAGCTCATGGAAAGCCATATAA-CG
1 GGAAGCTCATAGAAAGCCAT-TAATCA
*
31935694 GGACGCTCATA
1 GGAAGCTCATA
31935705 AGAGCTGTAG
Statistics
Matches: 49, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
25 9 0.18
26 35 0.71
27 5 0.10
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
GGAAGCTCATAGAAAGCCATTAATCA
Found at i:31938236 original size:41 final size:41
Alignment explanation
Indices: 31938179--31939114 Score: 1800
Period size: 41 Copynumber: 22.8 Consensus size: 41
31938169 TTTTGTAAGT
31938179 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938220 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938261 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938302 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938343 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938384 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938425 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938466 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938507 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938548 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938589 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938630 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938671 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938712 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938753 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938794 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938835 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938876 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938917 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938958 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
31938999 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
* * * *
31939040 TCAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGTA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
* ** *
31939081 TCGGGCTTGGTGCCTAGCAGGCTTTATGCCGGTG
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTG
31939115 TTATATACAA
Statistics
Matches: 885, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
41 885 1.00
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.34
Consensus pattern (41 bp):
TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
Found at i:31944191 original size:18 final size:18
Alignment explanation
Indices: 31944168--31944209 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
31944158 AAGTGTTGTT
*
31944168 TTTTTATCGTTTTATTGC
1 TTTTTATCATTTTATTGC
*
31944186 TTTTTATTATTTTATTGC
1 TTTTTATCATTTTATTGC
31944204 TATTTT
1 T-TTTT
31944210 CTCTTCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (18 bp):
TTTTTATCATTTTATTGC
Found at i:31944273 original size:14 final size:14
Alignment explanation
Indices: 31944254--31944281 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
31944244 TTGACAATTA
31944254 TGTTGTTATTATTT
1 TGTTGTTATTATTT
31944268 TGTTGTTATTATTT
1 TGTTGTTATTATTT
31944282 GGATATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (14 bp):
TGTTGTTATTATTT
Found at i:31945197 original size:15 final size:16
Alignment explanation
Indices: 31945158--31945197 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
31945148 CTACCCATTT
*
31945158 TATTTTTTAATTTTTA
1 TATTTTTTTATTTTTA
*
31945174 TATTATTTTA-TTTTA
1 TATTTTTTTATTTTTA
31945189 TATTTTTTT
1 TATTTTTTT
31945198 TTGTGAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TATTTTTTTATTTTTA
Found at i:31945444 original size:15 final size:15
Alignment explanation
Indices: 31945424--31945453 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
31945414 TATAAATTGC
31945424 ATGATATAATATAAT
1 ATGATATAATATAAT
*
31945439 ATGATATATTATAAT
1 ATGATATAATATAAT
31945454 TTTGGAAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (15 bp):
ATGATATAATATAAT
Found at i:31948379 original size:27 final size:27
Alignment explanation
Indices: 31948349--31948400 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
31948339 TTATATTCGA
31948349 AACAAGAACATATACCTATATACTCAT
1 AACAAGAACATATACCTATATACTCAT
31948376 AACAAGAACATATACCTATATACTC
1 AACAAGAACATATACCTATATACTC
31948401 GTACATATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.48, C:0.23, G:0.04, T:0.25
Consensus pattern (27 bp):
AACAAGAACATATACCTATATACTCAT
Found at i:31948653 original size:35 final size:35
Alignment explanation
Indices: 31948613--31948687 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
31948603 CAACAAAATT
31948613 TACATGTATACACATGTATATTCGAATATAATTTA
1 TACATGTATACACATGTATATTCGAATATAATTTA
31948648 TACATGTATACACATGTATATTCGAATATAATTTA
1 TACATGTATACACATGTATATTCGAATATAATTTA
31948683 TACAT
1 TACAT
31948688 ACATATATGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (35 bp):
TACATGTATACACATGTATATTCGAATATAATTTA
Found at i:31950516 original size:18 final size:18
Alignment explanation
Indices: 31950493--31950527 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31950483 TTTCATTTCA
* *
31950493 TTTTTAGTTTAGGTTTTT
1 TTTTTAGGTTAGATTTTT
31950511 TTTTTAGGTTAGATTTT
1 TTTTTAGGTTAGATTTT
31950528 AGTTTTGTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.17, T:0.69
Consensus pattern (18 bp):
TTTTTAGGTTAGATTTTT
Found at i:31954877 original size:19 final size:19
Alignment explanation
Indices: 31954840--31954879 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
31954830 TTCAATCGAG
31954840 CTCAATTTTAGTATCAAGCT
1 CTCAATTTTAG-ATCAAGCT
31954860 CTCAATTTTA-AGTCAAGCT
1 CTCAATTTTAGA-TCAAGCT
31954879 C
1 C
31954880 AATTTTGGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.05
19 8 0.42
20 10 0.53
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.38
Consensus pattern (19 bp):
CTCAATTTTAGATCAAGCT
Found at i:31959501 original size:198 final size:197
Alignment explanation
Indices: 31959140--31959929 Score: 907
Period size: 198 Copynumber: 4.0 Consensus size: 197
31959130 ATTCTCCAAC
* * * * **
31959140 AGGTTCAAAATCGAAACC-CTTTACGATCTCTTTTCTCTATAAGCTTCTATTT-TCTCGAGGGTA
1 AGGTTGAAAATTGAAACCTC-TTACGATCT-TTTTCTCTATAAGCTTCT-TTTCTATTGAGGAAA
* * * * *
31959203 ATAACAAATAGCAGCTCAATAATATCTCATTCATCCACCATGGAATTGGAAAATAGCATGCTGAA
63 ATATCGAATAGTAGCTCGATAACATCTCATTCATCCACCATGGAATTGGAAAATAGCATGCTGAA
* * * * * * *
31959268 GAAGAAATATGATAGAATTTAATATTTAGTTCTTAGCTTCTAAGATAATGCATCCGTGATTATGT
128 GAAGAAATATGATAGAATTTAATCTTTATTTCTTAGTTTTTAAGATCATGCATCCATGATTATGA
*
31959333 TATTT
193 TGTTT
* * *
31959338 AGGTTGAAAATTGAAACCTCTTACGATCTTGTTTCTCGACAAGCTTCTTTTCTAATGAGGAAAAT
1 AGGTTGAAAATTGAAACCTCTTACGATCTT-TTTCTCTATAAGCTTCTTTTCTATTGAGGAAAAT
** * * * * *
31959403 ATCGAATAAAAGCTAGATAACATCTCATTCATTCACCATGGATTTGGAAACTAGCATGTTGAAGA
65 ATCGAATAGTAGCTCGATAACATCTCATTCATCCACCATGGAATTGGAAAATAGCATGCTGAAGA
*
31959468 AGAAATATGATAGAATTTGATCTTTATTTCTTAGTTTTTACA-ATCATGCATCCATGATTATGAT
130 AGAAATATGATAGAATTTAATCTTTATTTCTTAGTTTTTA-AGATCATGCATCCATGATTATGAT
31959532 GTTT
194 GTTT
* * * * *
31959536 AGGTTGAAAATTGAAACCACTTAAGGTTTCTTTTCTCTATAAGCTTCTTTTCTATTGATGAAAAT
1 AGGTTGAAAATTGAAACCTCTTACGATCT-TTTTCTCTATAAGCTTCTTTTCTATTGAGGAAAAT
* * * * * *
31959601 ATCAAATAGTTGCTCGATAACATCCCATTAATCCTCCATGG-ATTCAGAAAATAGCATGCT-AAT
65 ATCGAATAGTAGCTCGATAACATCTCATTCATCCACCATGGAATT-GGAAAATAGCATGCTGAA-
* * *
31959664 GAAGAAATATAATAGAATTTAATCTTTATTTCTTAGTTTTTATGATCATGCATCCATGATTGTGA
128 GAAGAAATATGATAGAATTTAATCTTTATTTCTTAGTTTTTAAGATCATGCATCCATGATTATGA
31959729 TGTTT
193 TGTTT
** *
31959734 AGGTCCAAAATTGAAACCAT-GTACGATCTCTTTTCTCTATAAGCTTCTTTTCTATTGAGGAAAA
1 AGGTTGAAAATTGAAACC-TCTTACGATCT-TTTTCTCTATAAGCTTCTTTTCTATTGAGGAAAA
* *
31959798 TATCGAATAGTAGCTCGATAACATCTCATTCAGCCGCCATGGAATTGGAAAATAGCATGCT--A-
64 TATCGAATAGTAGCTCGATAACATCTCATTCATCCACCATGGAATTGGAAAATAGCATGCTGAAG
* * * * * * * *
31959860 AAG-GAGATGGTAGATTTTAATCTTTATTTCTTAGTTTTTATGATCAAGCATCCGTGATTGTGAT
129 AAGAAATATGATAGAATTTAATCTTTATTTCTTAGTTTTTAAGATCATGCATCCATGATTATGAT
31959924 GTTT
194 GTTT
31959928 AG
1 AG
31959930 CTTAAAAGGT
Statistics
Matches: 506, Mismatches: 76, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
194 60 0.12
195 3 0.01
197 9 0.02
198 428 0.85
199 6 0.01
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (197 bp):
AGGTTGAAAATTGAAACCTCTTACGATCTTTTTCTCTATAAGCTTCTTTTCTATTGAGGAAAATA
TCGAATAGTAGCTCGATAACATCTCATTCATCCACCATGGAATTGGAAAATAGCATGCTGAAGAA
GAAATATGATAGAATTTAATCTTTATTTCTTAGTTTTTAAGATCATGCATCCATGATTATGATGT
TT
Found at i:31965462 original size:2 final size:2
Alignment explanation
Indices: 31965455--31965479 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
31965445 GTCATCTAGT
31965455 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
31965480 TTCTTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:31966073 original size:31 final size:31
Alignment explanation
Indices: 31966037--31966123 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 31
31966027 ATGATTAAAT
*
31966037 CAAAATTAAAATTTCAAGTATACATTTGAAC
1 CAAAATTAAAATTTCAAGTATACAATTGAAC
* * * * * *
31966068 CAAAATTAGAGTTTCAGGTGTATAATTGCAC
1 CAAAATTAAAATTTCAAGTATACAATTGAAC
*
31966099 C-AAATTAAAA-TTCATGTATACAATT
1 CAAAATTAAAATTTCAAGTATACAATT
31966124 ACACATTAAA
Statistics
Matches: 44, Mismatches: 12, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 12 0.27
30 7 0.16
31 25 0.57
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (31 bp):
CAAAATTAAAATTTCAAGTATACAATTGAAC
Found at i:31966235 original size:23 final size:24
Alignment explanation
Indices: 31966187--31966236 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
31966177 AATATTGTTG
*
31966187 AAAAGATATTTAATATATGCATAT
1 AAAAGATATTTAATATATGCAAAT
*
31966211 AAAA-ATATTTACTA-ATGTCAAAT
1 AAAAGATATTTAATATATG-CAAAT
31966234 AAA
1 AAA
31966237 TGGTATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 3 0.13
23 16 0.70
24 4 0.17
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (24 bp):
AAAAGATATTTAATATATGCAAAT
Found at i:31968075 original size:6 final size:6
Alignment explanation
Indices: 31968067--31968096 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
31968057 TCCATTCAGA
31968067 AAAAT- AAAATG AAAATG AAAATG AAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG A
31968097 CAGGAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:31969113 original size:26 final size:26
Alignment explanation
Indices: 31969084--31969135 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31969074 ATTGCAATGG
*
31969084 TTGATTTAACCAACTGATTGTATTAA
1 TTGATTTAACCAACTGATTCTATTAA
*
31969110 TTGATTTGACCAACTGATTCTATTAA
1 TTGATTTAACCAACTGATTCTATTAA
31969136 CTGTTACGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (26 bp):
TTGATTTAACCAACTGATTCTATTAA
Found at i:31971146 original size:31 final size:29
Alignment explanation
Indices: 31971110--31971222 Score: 118
Period size: 31 Copynumber: 3.7 Consensus size: 29
31971100 TAATCATATT
31971110 AATATTAAATTAATAAAATATTATCAAGATA
1 AATATTAAATTAATAAAATA-TATC-AGATA
** * * *
31971141 AATATTAAATTTAATTTAATATCTCATATT
1 AATATTAAA-TTAATAAAATATATCAGATA
31971171 AATATTAAATTAATAAAATACTATCTAGATA
1 AATATTAAATTAATAAAATA-TATC-AGATA
*
31971202 AATATTAAATTCATTAAAATA
1 AATATTAAATT-AATAAAATA
31971223 ATATTATCTT
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
29 9 0.13
30 15 0.22
31 26 0.39
32 17 0.25
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (29 bp):
AATATTAAATTAATAAAATATATCAGATA
Found at i:31971177 original size:30 final size:31
Alignment explanation
Indices: 31971094--31971222 Score: 113
Period size: 31 Copynumber: 4.2 Consensus size: 31
31971084 CAACTATGAT
*
31971094 TAAAAT-TAATCATATTAATATTAAA-TTAA
1 TAAAATATTATCATATTAATATTAAATTTAA
* *
31971123 TAAAATATTATCAAGATAAATATTAAATTTAA
1 TAAAATATTATC-ATATTAATATTAAATTTAA
** *
31971155 TTTAATA-TCTCATATTAATATTAAA-TTAA
1 TAAAATATTATCATATTAATATTAAATTTAA
* * * * *
31971184 TAAAATACTATCTAGATAAATATTAAATTCAT
1 TAAAATATTATC-ATATTAATATTAAATTTAA
31971216 TAAAATA
1 TAAAATA
31971223 ATATTATCTT
Statistics
Matches: 79, Mismatches: 15, Indels: 9
0.77 0.15 0.09
Matches are distributed among these distances:
29 15 0.19
30 19 0.24
31 27 0.34
32 18 0.23
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (31 bp):
TAAAATATTATCATATTAATATTAAATTTAA
Found at i:31979800 original size:21 final size:21
Alignment explanation
Indices: 31979774--31979816 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
31979764 TTGCTACTTA
*
31979774 GTGGTGGCGCCATTCTTTATG
1 GTGGTGGCGCCATTCTCTATG
*
31979795 GTGGTGGCGTCATTCTCTATG
1 GTGGTGGCGCCATTCTCTATG
31979816 G
1 G
31979817 CTCCACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.19, G:0.35, T:0.37
Consensus pattern (21 bp):
GTGGTGGCGCCATTCTCTATG
Found at i:31981727 original size:41 final size:41
Alignment explanation
Indices: 31981682--31981824 Score: 144
Period size: 41 Copynumber: 3.3 Consensus size: 41
31981672 AAACACATTC
*
31981682 TTATAAGATTAAGAAATTATATAATTAAAAATTAAAAATAG
1 TTATAAAATTAAGAAATTATATAATTAAAAATTAAAAATAG
* * **
31981723 TTATAAAATTAA-AAGAGGCGTTATATAGTTAAATATATGAAACACATTC
1 TTATAAAATTAAGAA-A----TTATATAATTAAA-A-ATTAAA-A-ATAG
*
31981772 TTATAAGATTAAGAAATTATATAATTAAAAATTAAAAATAG
1 TTATAAAATTAAGAAATTATATAATTAAAAATTAAAAATAG
31981813 TTATAAAATTAA
1 TTATAAAATTAA
31981825 AAGAGGCGTT
Statistics
Matches: 81, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
40 2 0.02
41 25 0.31
42 1 0.01
43 5 0.06
44 1 0.01
45 24 0.30
46 1 0.01
47 5 0.06
48 1 0.01
49 14 0.17
50 2 0.02
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.34
Consensus pattern (41 bp):
TTATAAAATTAAGAAATTATATAATTAAAAATTAAAAATAG
Found at i:31981755 original size:45 final size:45
Alignment explanation
Indices: 31981698--31981834 Score: 149
Period size: 45 Copynumber: 3.0 Consensus size: 45
31981688 GATTAAGAAA
31981698 TTATATAATTAAAAATTAAAAATAGTTATAAAATTAAAAGAGGCG
1 TTATATAATTAAAAATTAAAAATAGTTATAAAATTAAAAGAGGCG
* * ** *
31981743 TTATATAGTTAAATATATGAAACACATTCTTATAAGATTAAGAA-A----
1 TTATATAATTAAA-A-ATTAAA-A-ATAGTTATAAAATTAA-AAGAGGCG
31981788 TTATATAATTAAAAATTAAAAATAGTTATAAAATTAAAAGAGGCG
1 TTATATAATTAAAAATTAAAAATAGTTATAAAATTAAAAGAGGCG
31981833 TT
1 TT
31981835 TTAGAAATAT
Statistics
Matches: 72, Mismatches: 10, Indels: 20
0.71 0.10 0.20
Matches are distributed among these distances:
40 2 0.03
41 14 0.19
42 1 0.01
43 5 0.07
44 1 0.01
45 26 0.36
46 1 0.01
47 5 0.07
48 1 0.01
49 14 0.19
50 2 0.03
ACGTcount: A:0.53, C:0.04, G:0.10, T:0.34
Consensus pattern (45 bp):
TTATATAATTAAAAATTAAAAATAGTTATAAAATTAAAAGAGGCG
Found at i:31981775 original size:90 final size:91
Alignment explanation
Indices: 31981652--31981834 Score: 359
Period size: 90 Copynumber: 2.0 Consensus size: 91
31981642 AAAATATTAT
31981652 TTATATAGTTAAAATATATGAAACACATTCTTATAAGATTAAGAAATTATATAATTAAAAATTAA
1 TTATATAGTTAAAATATATGAAACACATTCTTATAAGATTAAGAAATTATATAATTAAAAATTAA
31981717 AAATAGTTATAAAATTAAAAGAGGCG
66 AAATAGTTATAAAATTAAAAGAGGCG
31981743 TTATATAGTT-AAATATATGAAACACATTCTTATAAGATTAAGAAATTATATAATTAAAAATTAA
1 TTATATAGTTAAAATATATGAAACACATTCTTATAAGATTAAGAAATTATATAATTAAAAATTAA
31981807 AAATAGTTATAAAATTAAAAGAGGCG
66 AAATAGTTATAAAATTAAAAGAGGCG
31981833 TT
1 TT
31981835 TTAGAAATAT
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
90 82 0.89
91 10 0.11
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.34
Consensus pattern (91 bp):
TTATATAGTTAAAATATATGAAACACATTCTTATAAGATTAAGAAATTATATAATTAAAAATTAA
AAATAGTTATAAAATTAAAAGAGGCG
Found at i:31993629 original size:16 final size:18
Alignment explanation
Indices: 31993591--31993636 Score: 60
Period size: 16 Copynumber: 2.6 Consensus size: 18
31993581 TTAAAATATA
*
31993591 ATTATTTTTAGAAAAGAGT
1 ATTATTTTT-CAAAAGAGT
31993610 ATTATTTTTCAAAA-AG-
1 ATTATTTTTCAAAAGAGT
31993626 ATTATTTTTCA
1 ATTATTTTTCA
31993637 CATATAGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 11 0.42
17 2 0.08
18 4 0.15
19 9 0.35
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (18 bp):
ATTATTTTTCAAAAGAGT
Found at i:31994916 original size:16 final size:16
Alignment explanation
Indices: 31994892--31994927 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
31994882 AATCTAATTC
* *
31994892 ATTTGATATATTTAAT
1 ATTTAATATATTAAAT
31994908 ATTTAATATATTAAAT
1 ATTTAATATATTAAAT
31994924 ATTT
1 ATTT
31994928 TTTAAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
ATTTAATATATTAAAT
Found at i:32004218 original size:43 final size:41
Alignment explanation
Indices: 32004162--32004244 Score: 112
Period size: 43 Copynumber: 2.0 Consensus size: 41
32004152 TTCATTGGGA
*
32004162 GGTTAAAATATAATTTTATCATATATGAACTTATAAATTTTT
1 GGTTAAAATATAATTTTACCATATATGAACTT-TAAATTTTT
* * *
32004204 GGTTCAAAGTATAATTTTACCATATATTAACTTTTAATTTT
1 GGTT-AAAATATAATTTTACCATATATGAACTTTAAATTTT
32004245 AACATTTACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 11 0.31
43 25 0.69
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (41 bp):
GGTTAAAATATAATTTTACCATATATGAACTTTAAATTTTT
Found at i:32012604 original size:28 final size:28
Alignment explanation
Indices: 32012560--32012615 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
32012550 AACTGCAGGG
*
32012560 AAGCTGACGGTTGAATAATCAAGAAGTA
1 AAGCTGACGGTTCAATAATCAAGAAGTA
32012588 AAGCTGACGGTTCAATAATCAAGAAGTA
1 AAGCTGACGGTTCAATAATCAAGAAGTA
32012616 TTCTTTTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.21
Consensus pattern (28 bp):
AAGCTGACGGTTCAATAATCAAGAAGTA
Found at i:32018034 original size:6 final size:6
Alignment explanation
Indices: 32018023--32018050 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
32018013 TAATATATAT
32018023 AATTTA AATTTA AATTTA AATTTA AATT
1 AATTTA AATTTA AATTTA AATTTA AATT
32018051 AGACATTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
AATTTA
Found at i:32031992 original size:60 final size:60
Alignment explanation
Indices: 32031859--32031980 Score: 167
Period size: 61 Copynumber: 2.0 Consensus size: 60
32031849 ATTGCACTAG
* *
32031859 TAGTCA-CTCAACTATTAGTAAATTACTTTTTTGATCACCTAACTATAAAAAGTTACAAAA
1 TAGTCACCT-AACTACTAGTAAATTACTTTTTTGATCACCCAACTATAAAAAGTTACAAAA
* *
32031919 TAGTCACCTAACTACTAGTAAAATGT-CTTTTTTGGTCACCCAACTATGAAAAGTTACAAAA
1 TAGTCACCTAACTACTAGT-AAAT-TACTTTTTTGATCACCCAACTATAAAAAGTTACAAAA
32031980 T
1 T
32031981 GATATCTAAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
60 15 0.27
61 39 0.71
62 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (60 bp):
TAGTCACCTAACTACTAGTAAATTACTTTTTTGATCACCCAACTATAAAAAGTTACAAAA
Found at i:32032583 original size:60 final size:60
Alignment explanation
Indices: 32032484--32032608 Score: 144
Period size: 60 Copynumber: 2.1 Consensus size: 60
32032474 ATATAGTTTG
* * * ***
32032484 GTGACCATTTTGTAACTTTTCATAGTTGTGTGATCAAAAAAGGGGTTTATTAATAGTTAA
1 GTGACCATTTTATAACTTTTCATAGTTGAGTAATCAAAAAAGAAATTTATTAATAGTTAA
* * * *
32032544 GTGATCATTTTATGACTTTTCATAGTTGAGTAA-CTAAAAACGAAATTTATTAATAGTTGA
1 GTGACCATTTTATAACTTTTCATAGTTGAGTAATC-AAAAAAGAAATTTATTAATAGTTAA
32032604 GTGAC
1 GTGAC
32032609 TACTAGTATA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
59 1 0.02
60 52 0.98
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (60 bp):
GTGACCATTTTATAACTTTTCATAGTTGAGTAATCAAAAAAGAAATTTATTAATAGTTAA
Found at i:32050543 original size:7 final size:7
Alignment explanation
Indices: 32050531--32050556 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32050521 CGTGCAAGGT
32050531 TTTTGTA
1 TTTTGTA
32050538 TTTTGTA
1 TTTTGTA
32050545 TTTTGTA
1 TTTTGTA
32050552 TTTTG
1 TTTTG
32050557 GTAGATTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.73
Consensus pattern (7 bp):
TTTTGTA
Found at i:32050716 original size:63 final size:63
Alignment explanation
Indices: 32050648--32051490 Score: 1670
Period size: 63 Copynumber: 13.4 Consensus size: 63
32050638 GTATAATTAG
32050648 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
32050711 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
32050774 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
32050837 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
32050900 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
32050963 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
32051026 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
32051089 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
32051152 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
32051215 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
32051278 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
32051341 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
32051404 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
1 ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
*
32051467 ATATATATATATATACAT-ATATAT
1 ATATATATATATATATATCATATAT
32051491 AAAAATTAAT
Statistics
Matches: 779, Mismatches: 1, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
62 6 0.01
63 773 0.99
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (63 bp):
ATATATATATATATATATCATATATTTTTCTTCTTTTTTTTCCTTTCTAAATGTGGAAAAAGA
Found at i:32052819 original size:31 final size:31
Alignment explanation
Indices: 32052753--32052812 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
32052743 GATAATATAA
* * *
32052753 ATTTTGGCTCTTGAATTTGGTAATTAGATCT
1 ATTTTGGCTCTTCAATTTGGCAATTAAATCT
32052784 ATTTTGG-TCATTCAATTTGGCAATTAAAT
1 ATTTTGGCTC-TTCAATTTGGCAATTAAAT
32052813 TCATTTTTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 2 0.08
31 23 0.92
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.47
Consensus pattern (31 bp):
ATTTTGGCTCTTCAATTTGGCAATTAAATCT
Found at i:32053963 original size:18 final size:17
Alignment explanation
Indices: 32053930--32053968 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
32053920 TTTTATAAAT
32053930 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
32053948 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
32053965 TGTG
1 TGTG
32053969 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:32054225 original size:23 final size:23
Alignment explanation
Indices: 32054194--32054269 Score: 93
Period size: 23 Copynumber: 3.3 Consensus size: 23
32054184 AGTGTTATTG
*
32054194 ATCAATGGTAGCTTCGGCTACA-
1 ATCAGTGGTAGCTTCGGCTACAT
*
32054216 ATTCAGTGGTAGCTAT-GGCTGCAT
1 A-TCAGTGGTAGCT-TCGGCTACAT
*
32054240 ATCAGTGGTAGCTTCTGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
32054263 ATCAGTG
1 ATCAGTG
32054270 TGGCACTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
22 2 0.04
23 42 0.91
24 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:32054712 original size:7 final size:6
Alignment explanation
Indices: 32054686--32054710 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32054676 ACCTGTTTAA
32054686 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
32054711 TAAGTATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:32062217 original size:27 final size:27
Alignment explanation
Indices: 32062179--32062231 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
32062169 AAATGCATGG
32062179 TATACTACACTCAACTTGAGGATTTAA
1 TATACTACACTCAACTTGAGGATTTAA
32062206 TATACTACACTCAACTTGAGGATTTA
1 TATACTACACTCAACTTGAGGATTTA
32062232 GGTTCCTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (27 bp):
TATACTACACTCAACTTGAGGATTTAA
Found at i:32068603 original size:2 final size:2
Alignment explanation
Indices: 32068598--32068623 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32068588 TATATGCGTG
32068598 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
32068624 AGTTTTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32073563 original size:13 final size:11
Alignment explanation
Indices: 32073527--32073557 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
32073517 CCGCTCGTAT
32073527 TAATTTTTATA
1 TAATTTTTATA
*
32073538 TTATTTTTATA
1 TAATTTTTATA
32073549 TAATTTTTA
1 TAATTTTTA
32073558 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:32074680 original size:22 final size:22
Alignment explanation
Indices: 32074655--32074696 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
32074645 TACACCAAAA
*
32074655 TAGGCTTTTAGCGGCGCTTTTT
1 TAGGCCTTTAGCGGCGCTTTTT
32074677 TAGGCCTTTAGCGGCGCTTT
1 TAGGCCTTTAGCGGCGCTTT
32074697 GATAAGCGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.10, C:0.21, G:0.29, T:0.40
Consensus pattern (22 bp):
TAGGCCTTTAGCGGCGCTTTTT
Found at i:32074790 original size:44 final size:43
Alignment explanation
Indices: 32074739--32074842 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
32074729 GCGTCGCTAA
* * *
32074739 CTTTAGCGGCGTTTTTAGAAAAAAACGCCACTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTT-CAAAAAAACACCACTAAAGACCAAGAC
** * * *
32074783 CTTTAGCGGCGCTTTTCCCACAAACACCGCTATAGACCAAGAC
1 CTTTAGCGGCGCTTTTCAAAAAAACACCACTAAAGACCAAGAC
32074826 CTTTAGCGGCGCTTTTC
1 CTTTAGCGGCGCTTTTC
32074843 CCATAAAGGC
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
43 37 0.71
44 15 0.29
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCAAAAAAACACCACTAAAGACCAAGAC
Found at i:32074826 original size:43 final size:43
Alignment explanation
Indices: 32074769--32074873 Score: 156
Period size: 43 Copynumber: 2.4 Consensus size: 43
32074759 AAAAACGCCA
32074769 CTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACACCG
1 CTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACACCG
* * **
32074812 CTATAGACCAAGACCTTTAGCGGCGCTTTTCCCATAAAGGCCG
1 CTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACACCG
* *
32074855 CTAAAAACCATGACCTTTA
1 CTAAAGACCAAGACCTTTA
32074874 AAAAAAATTA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.22
Consensus pattern (43 bp):
CTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACACCG
Found at i:32075847 original size:53 final size:53
Alignment explanation
Indices: 32075781--32075895 Score: 221
Period size: 53 Copynumber: 2.2 Consensus size: 53
32075771 AGAATTAATA
32075781 AAACTGAAAGGAGAATGCAATAGCATGATGACTTGACCCAAAAGTTCTGATTT
1 AAACTGAAAGGAGAATGCAATAGCATGATGACTTGACCCAAAAGTTCTGATTT
*
32075834 AAACTGAAAGGAGAATGCAATAGCATGATGACTTGACCTAAAAGTTCTGATTT
1 AAACTGAAAGGAGAATGCAATAGCATGATGACTTGACCCAAAAGTTCTGATTT
32075887 AAACTGAAA
1 AAACTGAAA
32075896 ATTATCCCTT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 61 1.00
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.24
Consensus pattern (53 bp):
AAACTGAAAGGAGAATGCAATAGCATGATGACTTGACCCAAAAGTTCTGATTT
Found at i:32078027 original size:73 final size:78
Alignment explanation
Indices: 32077950--32078108 Score: 229
Period size: 74 Copynumber: 2.1 Consensus size: 78
32077940 ATAAATTGAT
*
32077950 TTATTTTTTGCGGC-GTTTTTATGAAAACGCCACTAAATGTTTTGCTATATAAAATG-GCTA-TT
1 TTATTTTTTGCGGCTGTTTTTATAAAAACGCCACTAAATGTTTTGCTATATAAAATGAGCTATTT
32078012 -TTTAAAGT-AAA
66 GTTTAAAGTAAAA
* * * *
32078023 TTATTTTTTGTGGCTTTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATGAAATGACGCTATT
1 TTATTTTTTGCGGCTGTTTTTATAAAAACGCCACTAAATGTTTTGCTATATAAAATGA-GCTATT
32078088 TGTTTAAAGTAAAA
65 TGTTTAAAGTAAAA
32078102 TTATTTT
1 TTATTTT
32078109 ACTATCAAAT
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
73 13 0.17
74 38 0.51
76 4 0.05
77 2 0.03
78 8 0.11
79 10 0.13
ACGTcount: A:0.30, C:0.10, G:0.14, T:0.45
Consensus pattern (78 bp):
TTATTTTTTGCGGCTGTTTTTATAAAAACGCCACTAAATGTTTTGCTATATAAAATGAGCTATTT
GTTTAAAGTAAAA
Found at i:32084580 original size:80 final size:80
Alignment explanation
Indices: 32084447--32084608 Score: 324
Period size: 80 Copynumber: 2.0 Consensus size: 80
32084437 AAGAACATTT
32084447 CTCGGAGTTCCTTCCATACTCAACAGTATATTTGGAAGTTGAGAAGCTCAAGAAGTCCCTGGGAA
1 CTCGGAGTTCCTTCCATACTCAACAGTATATTTGGAAGTTGAGAAGCTCAAGAAGTCCCTGGGAA
32084512 TAAATATTTGATTGC
66 TAAATATTTGATTGC
32084527 CTCGGAGTTCCTTCCATACTCAACAGTATATTTGGAAGTTGAGAAGCTCAAGAAGTCCCTGGGAA
1 CTCGGAGTTCCTTCCATACTCAACAGTATATTTGGAAGTTGAGAAGCTCAAGAAGTCCCTGGGAA
32084592 TAAATATTTGATTGC
66 TAAATATTTGATTGC
32084607 CT
1 CT
32084609 TTTGATTTTC
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (80 bp):
CTCGGAGTTCCTTCCATACTCAACAGTATATTTGGAAGTTGAGAAGCTCAAGAAGTCCCTGGGAA
TAAATATTTGATTGC
Found at i:32088490 original size:26 final size:26
Alignment explanation
Indices: 32088461--32088530 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
32088451 CCCGATATAT
32088461 GGCTCTTCGTGAGCTTCCCAATTAAA
1 GGCTCTTCGTGAGCTTCCCAATTAAA
* ** *
32088487 GGCTCTTTGTGAGCTTCCTGATTAAT
1 GGCTCTTCGTGAGCTTCCCAATTAAA
*
32088513 GGCTCTCCG-GAGCTTCCC
1 GGCTCTTCGTGAGCTTCCC
32088531 GAGATGGCTC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
25 8 0.22
26 29 0.78
ACGTcount: A:0.16, C:0.29, G:0.23, T:0.33
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCAATTAAA
Found at i:32088576 original size:25 final size:24
Alignment explanation
Indices: 32088497--32088598 Score: 71
Period size: 25 Copynumber: 4.2 Consensus size: 24
32088487 GGCTCTTTGT
*
32088497 GAGCTTCCTGATTAATGGCTCTCCG
1 GAGCTTCCTGA-TAATGGCTATCCG
* * ** **
32088522 GAGCTTCCCGA-GATGGCTCGCTT
1 GAGCTTCCTGATAATGGCTATCCG
* *
32088545 AAACTTCCTGATATATGGCTATCCG
1 GAGCTTCCTGATA-ATGGCTATCCG
* * *
32088570 GAGCTTCCTGTTAATGGCTCTTCG
1 GAGCTTCCTGATAATGGCTATCCG
32088594 GAGCT
1 GAGCT
32088599 ACCCCTTATT
Statistics
Matches: 57, Mismatches: 18, Indels: 5
0.71 0.22 0.06
Matches are distributed among these distances:
23 16 0.28
24 14 0.25
25 27 0.47
ACGTcount: A:0.18, C:0.26, G:0.25, T:0.31
Consensus pattern (24 bp):
GAGCTTCCTGATAATGGCTATCCG
Found at i:32088633 original size:72 final size:73
Alignment explanation
Indices: 32088497--32088636 Score: 167
Period size: 72 Copynumber: 1.9 Consensus size: 73
32088487 GGCTCTTTGT
* * * *
32088497 GAGCTTCCTGATTAATGGCTCTCCGGAGCTTCCCGAGATGGCTCGCTTAAACTTCCTGATATATG
1 GAGCTTCCTGATTAATGGCTCTCCGGAGCTACCCCAGATGGCTCGCATAAACTTCCTGAAATATG
32088562 GCTATCCG
66 GCTATCCG
* ** * * *
32088570 GAGCTTCCTG-TTAATGGCTCTTCGGAGCTACCCCTTATTGGCTCGCATGAGCTTTCT-AAATAT
1 GAGCTTCCTGATTAATGGCTCTCCGGAGCTACCCCAGA-TGGCTCGCATAAACTTCCTGAAATAT
32088633 GGCT
65 GGCT
32088637 CTTATGAGCT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
72 31 0.55
73 25 0.45
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (73 bp):
GAGCTTCCTGATTAATGGCTCTCCGGAGCTACCCCAGATGGCTCGCATAAACTTCCTGAAATATG
GCTATCCG
Found at i:32090919 original size:21 final size:21
Alignment explanation
Indices: 32090894--32090939 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
32090884 TAACATTAAA
32090894 TTTTAAAATT-TTTATTTATAT
1 TTTTAAAATTATTT-TTTATAT
*
32090915 TTTTAAAATTATTTTTTGTAT
1 TTTTAAAATTATTTTTTATAT
32090936 TTTT
1 TTTT
32090940 CGAATGTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTAAAATTATTTTTTATAT
Found at i:32092820 original size:308 final size:309
Alignment explanation
Indices: 32092252--32092869 Score: 1229
Period size: 308 Copynumber: 2.0 Consensus size: 309
32092242 AAAATTATTA
32092252 AATATTATATTAAAATTTCTATAAATCAAATTTTAAAACTTTTAAAAAATATGGTTGGATCAAGC
1 AATATTATATTAAAATTTCTATAAATCAAATTTTAAAACTTTTAAAAAATATGGTTGGATCAAGC
32092317 TTCGTATTAATGAATTTAGACAAAATTTAATGTTTACATTTTAAGTTGAGTCGATCTTAGATAAA
66 TTCGTATTAATGAATTTAGACAAAATTTAATGTTTACATTTTAAGTTGAGTCGATCTTAGATAAA
32092382 CATATATTGTATAAGTACTATATTATGAGACTCATAATGATATAAGAAAGAATGAATTAAGTTTA
131 CATATATTGTATAAGTACTATATTATGAGACTCATAATGATATAAGAAAGAATGAATTAAGTTTA
32092447 AATTAATCATTTATAAATATTATCTGTTTGAATGAACTTTGAGACCCATCGAATCTAATCCTAAA
196 AATTAATCATTTATAAATATTATCTGTTTGAATGAACTTTGAGACCCATCGAATCTAATCCTAAA
32092512 TAATGATCTGATCCCAACCTGACTCGATATATAGATTATAAGAAAATTG
261 TAATGATCTGATCCCAACCTGACTCGATATATAGATTATAAGAAAATTG
32092561 AATATTATA-TAAAATTTCTATAAATCAAATTTTAAAACTTTTAAAAAATATGGTTGGATCAAGC
1 AATATTATATTAAAATTTCTATAAATCAAATTTTAAAACTTTTAAAAAATATGGTTGGATCAAGC
32092625 TTCGTATTAATGAATTTAGACAAAATTTAATGTTTACATTTTAAGTTGAGTCGATCTTAGATAAA
66 TTCGTATTAATGAATTTAGACAAAATTTAATGTTTACATTTTAAGTTGAGTCGATCTTAGATAAA
32092690 CATATATTGTATAAGTACTATATTATGAGACTCATAATGATATAAGAAAGAATGAATTAAGTTTA
131 CATATATTGTATAAGTACTATATTATGAGACTCATAATGATATAAGAAAGAATGAATTAAGTTTA
32092755 AATTAATCATTTATAAATATTATCTGTTTGAATGAACTTTGAGACCCATCGAATCTAATCCTAAA
196 AATTAATCATTTATAAATATTATCTGTTTGAATGAACTTTGAGACCCATCGAATCTAATCCTAAA
32092820 TAATGATCTGATCCCAACCTGACTCGATATATAGATTATAAGAAAATTG
261 TAATGATCTGATCCCAACCTGACTCGATATATAGATTATAAGAAAATTG
32092869 A
1 A
32092870 GAAAAAAAAA
Statistics
Matches: 309, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
308 300 0.97
309 9 0.03
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (309 bp):
AATATTATATTAAAATTTCTATAAATCAAATTTTAAAACTTTTAAAAAATATGGTTGGATCAAGC
TTCGTATTAATGAATTTAGACAAAATTTAATGTTTACATTTTAAGTTGAGTCGATCTTAGATAAA
CATATATTGTATAAGTACTATATTATGAGACTCATAATGATATAAGAAAGAATGAATTAAGTTTA
AATTAATCATTTATAAATATTATCTGTTTGAATGAACTTTGAGACCCATCGAATCTAATCCTAAA
TAATGATCTGATCCCAACCTGACTCGATATATAGATTATAAGAAAATTG
Found at i:32097503 original size:13 final size:13
Alignment explanation
Indices: 32097487--32097521 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
32097477 CCTACATACC
32097487 ATGCTGTACCGAA
1 ATGCTGTACCGAA
32097500 ATGCTGTACCGAA
1 ATGCTGTACCGAA
*
32097513 ATGCGGTAC
1 ATGCTGTAC
32097522 ATAATCAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (13 bp):
ATGCTGTACCGAA
Found at i:32100963 original size:16 final size:15
Alignment explanation
Indices: 32100942--32100986 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
32100932 GAGAGGGAGG
32100942 AAAAAAAGAAAAAGA
1 AAAAAAAGAAAAAGA
*
32100957 AAAAAAAGTTAAAAGA
1 AAAAAAAG-AAAAAGA
*
32100973 ACATAAAAGAAAAA
1 A-AAAAAAGAAAAA
32100987 ATTAAATTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 8 0.32
16 11 0.44
17 6 0.24
ACGTcount: A:0.80, C:0.02, G:0.11, T:0.07
Consensus pattern (15 bp):
AAAAAAAGAAAAAGA
Found at i:32101516 original size:13 final size:13
Alignment explanation
Indices: 32101498--32101522 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32101488 TAATTTCGCA
32101498 TTATCTAATAATT
1 TTATCTAATAATT
32101511 TTATCTAATAAT
1 TTATCTAATAAT
32101523 CTGGTGCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
TTATCTAATAATT
Found at i:32107818 original size:23 final size:22
Alignment explanation
Indices: 32107792--32107835 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
32107782 AACCTGAATT
32107792 TTAAAAT-CTGAAAAATAGAAAAA
1 TTAAAATCCT-AAAAATA-AAAAA
*
32107815 TTAAATTCCTAAAAATAAAAA
1 TTAAAATCCTAAAAATAAAAA
32107836 TAAAGGAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 13 0.68
24 2 0.11
ACGTcount: A:0.64, C:0.07, G:0.05, T:0.25
Consensus pattern (22 bp):
TTAAAATCCTAAAAATAAAAAA
Found at i:32127183 original size:22 final size:21
Alignment explanation
Indices: 32127136--32127189 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
32127126 TGATGAATTT
32127136 ATTA-TAATTT-ATTTAATAA
1 ATTATTAATTTAATTTAATAA
**
32127155 ACCATTAATTTAATTATAATAA
1 ATTATTAATTTAATT-TAATAA
32127177 ATTATT-ATTTAAT
1 ATTATTAATTTAAT
32127190 ATTTGAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 2 0.07
20 6 0.21
21 10 0.36
22 10 0.36
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTATTAATTTAATTTAATAA
Found at i:32134480 original size:22 final size:23
Alignment explanation
Indices: 32134454--32134500 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
32134444 AAAAATAAAA
*
32134454 TTGAAATAAT-TAGGTGAAATTT
1 TTGAAAAAATATAGGTGAAATTT
* *
32134476 TTGAAAAAATATGGGTTAAATTT
1 TTGAAAAAATATAGGTGAAATTT
32134499 TT
1 TT
32134501 TTCTTAGATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (23 bp):
TTGAAAAAATATAGGTGAAATTT
Found at i:32142231 original size:17 final size:18
Alignment explanation
Indices: 32142209--32142242 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32142199 ATAATTGTAA
*
32142209 TTTAAAT-TTTAATTATT
1 TTTAAATGTGTAATTATT
32142226 TTTAAATGTGTAATTAT
1 TTTAAATGTGTAATTAT
32142243 CACAAAGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (18 bp):
TTTAAATGTGTAATTATT
Found at i:32143145 original size:84 final size:84
Alignment explanation
Indices: 32143000--32143169 Score: 286
Period size: 84 Copynumber: 2.0 Consensus size: 84
32142990 TAGGTTTAGG
* *
32143000 GTTTATTGATCCCGATGTCCAATAAGCCATAAAAGTAACATGTTTTTAATCCCATTTTTGATGCG
1 GTTTATTGATCCCGATGTCCAACAAGCCATAAAAGTAACATGTTTTTAATCCCATTCTTGATGCG
32143065 TTTTTGGATGATTTATTAT
66 TTTTTGGATGATTTATTAT
** **
32143084 GTTTATTGATCCCGATGTCTGACAAGCCATAAAAGTTTCATGTTTTTAATCCCATTCTTGATGCG
1 GTTTATTGATCCCGATGTCCAACAAGCCATAAAAGTAACATGTTTTTAATCCCATTCTTGATGCG
32143149 TTTTTGGATGATTTATTAT
66 TTTTTGGATGATTTATTAT
32143168 GT
1 GT
32143170 AAATTAGTGA
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.44
Consensus pattern (84 bp):
GTTTATTGATCCCGATGTCCAACAAGCCATAAAAGTAACATGTTTTTAATCCCATTCTTGATGCG
TTTTTGGATGATTTATTAT
Found at i:32146191 original size:14 final size:13
Alignment explanation
Indices: 32146165--32146215 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
32146155 GTTTATTTGA
32146165 AATATAATAATAT
1 AATATAATAATAT
32146178 AATATAATTAATAT
1 AATATAA-TAATAT
* *
32146192 AAT-TTACAATAT
1 AATATAATAATAT
*
32146204 AATAAAATAATA
1 AATATAATAATA
32146216 ATATACTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
12 8 0.26
13 14 0.45
14 9 0.29
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (13 bp):
AATATAATAATAT
Found at i:32147911 original size:22 final size:22
Alignment explanation
Indices: 32147886--32147953 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
32147876 TCTTACAATA
*
32147886 AAATAAAAAAATGATTTAAACT
1 AAATAAAAATATGATTTAAACT
*
32147908 AAAT---AATATG-TTTACAC-
1 AAATAAAAATATGATTTAAACT
32147925 AGAATAAAAATATGATTTAAACT
1 A-AATAAAAATATGATTTAAACT
32147948 GAAATA
1 -AAATA
32147954 TTTAATATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 13
0.69 0.06 0.25
Matches are distributed among these distances:
17 1 0.03
18 9 0.25
19 5 0.14
21 6 0.17
22 10 0.28
23 4 0.11
24 1 0.03
ACGTcount: A:0.57, C:0.06, G:0.07, T:0.29
Consensus pattern (22 bp):
AAATAAAAATATGATTTAAACT
Found at i:32150150 original size:17 final size:16
Alignment explanation
Indices: 32150122--32150153 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
32150112 GAAACTTCTA
32150122 TTAAATTATAATTATT
1 TTAAATTATAATTATT
32150138 TTAAATATATAATTAT
1 TTAAAT-TATAATTAT
32150154 CATAATTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAAATTATAATTATT
Found at i:32158169 original size:15 final size:15
Alignment explanation
Indices: 32158135--32158169 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
32158125 GGTATCTCTT
* *
32158135 CTTCATGTACTTTAC
1 CTTCTTGTACTTCAC
32158150 CTTCTTGTACTTCAC
1 CTTCTTGTACTTCAC
32158165 CTTCT
1 CTTCT
32158170 ATGGCATGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.14, C:0.31, G:0.06, T:0.49
Consensus pattern (15 bp):
CTTCTTGTACTTCAC
Found at i:32160755 original size:17 final size:18
Alignment explanation
Indices: 32160723--32160756 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32160713 GCCCTCATGT
*
32160723 GTATTGTATTGCTTATTG
1 GTATTGTATTGATTATTG
32160741 GTATTG-ATTGATTATT
1 GTATTGTATTGATTATT
32160757 TGTGTTCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.03, G:0.21, T:0.56
Consensus pattern (18 bp):
GTATTGTATTGATTATTG
Found at i:32167599 original size:16 final size:16
Alignment explanation
Indices: 32167562--32167603 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
32167552 TTAATCATAT
*
32167562 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
32167578 TT-AAATATATTATAA
1 TTAAAATATATTATAA
32167593 TTAAAATATAT
1 TTAAAATATAT
32167604 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:32167610 original size:14 final size:15
Alignment explanation
Indices: 32167571--32167612 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
32167561 TTTAAACATA
*
32167571 ATTATTATTAAATAT
1 ATTATAATTAAATAT
32167586 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
32167600 A-TATAATTTAATA
1 ATTATAATTAAATA
32167613 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:32171077 original size:110 final size:109
Alignment explanation
Indices: 32170952--32171347 Score: 596
Period size: 110 Copynumber: 3.6 Consensus size: 109
32170942 ATCAATCGAG
* * * * *
32170952 AAATCGAAACCCAACACATTAGGGCACG-TTTCTCGGATTTCTAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
* * *
32171016 TTGAAATTTTTTTAAAAGGATATTTAGCCATTTGGTTGAATGAGAA
66 TT-AAA-ATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
*
32171062 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTTCCAAACACAAAACATTGCCTTAT
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAA-TTTCCAAACGCAAAACATTGCCTTAT
32171127 TTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
65 TTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * *
32171172 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGGATTTCCCAAACGCAAAACATTGCTTTAT
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTT-CCAAACGCAAAACATTGCCTTAT
*
32171237 TTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTTAACGAGAA
65 TTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * * *
32171282 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTTGAATTTCTAAACGCAAAACATTGCCTCATT
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
32171347 T
66 T
32171348 AGAAAAATAT
Statistics
Matches: 264, Mismatches: 19, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
109 25 0.09
110 201 0.76
111 11 0.04
112 27 0.10
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (109 bp):
AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
Found at i:32171496 original size:18 final size:18
Alignment explanation
Indices: 32171468--32171512 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
32171458 TGTATATATC
32171468 ATAACAAATAAA-TAAATAA
1 ATAA-AAATAAACTAAA-AA
*
32171487 ATAAAAATAAACTAAAAC
1 ATAAAAATAAACTAAAAA
32171505 ATAAAAAT
1 ATAAAAAT
32171513 GGACATATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (18 bp):
ATAAAAATAAACTAAAAA
Found at i:32172304 original size:110 final size:110
Alignment explanation
Indices: 32172179--32172469 Score: 451
Period size: 110 Copynumber: 2.6 Consensus size: 110
32172169 ATCAATCGAG
* * * * *
32172179 AAATCGAAACCCAACACATTAGGGCACG-TTTCTCGGATTTCTAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
* ** *
32172243 TTGAAATTTTTTTAAAAGGATATTTAGCCATTTGGTTGAATGAGAA
66 TTGAAA-ATTTTTAAAAGGATATAAAGCCATTTGGTTGAACGAGAA
32172289 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTTCCAAACGCAAAACATTGCCTTAT
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAA-TTTCCAAACGCAAAACATTGCCTTAT
*
32172354 TTT-AAAATTTTTAAAAGGATATAAAGTCATTTGGTTGAACGAGAA
65 TTTGAAAATTTTTAAAAGGATATAAAGCCATTTGGTTGAACGAGAA
*
32172399 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
32172464 TTGAAA
66 TTGAAA
32172470 NNNNNNNNNN
Statistics
Matches: 167, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
109 29 0.17
110 99 0.59
111 11 0.07
112 28 0.17
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (110 bp):
AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTGAAAATTTTTAAAAGGATATAAAGCCATTTGGTTGAACGAGAA
Found at i:32175457 original size:98 final size:98
Alignment explanation
Indices: 32175265--32175462 Score: 283
Period size: 98 Copynumber: 2.0 Consensus size: 98
32175255 GAGATAAGAC
* *
32175265 CTGATGTGATCTATTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTTCACTG
1 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTG
* * *
32175330 CAACTTTAGGGAGATAGAATTATCGGCTTCAAT
66 CAACTTCAGAGAGATAGAATTATCAGCTTCAAT
*
32175363 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATTTTAATCCACTCCACT
1 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGAT-CTGTGATTTTAATCCACTCCACT
* * *
32175427 GTAACTTCAGAGAGTTAGGATTA-CTAGCTTCAAT
65 GCAACTTCAGAGAGATAGAATTATC-AGCTTCAAT
32175461 CT
1 CT
32175463 ACTCCGTTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
97 1 0.01
98 86 0.97
99 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (98 bp):
CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTG
CAACTTCAGAGAGATAGAATTATCAGCTTCAAT
Found at i:32175567 original size:46 final size:45
Alignment explanation
Indices: 32175371--32176135 Score: 229
Period size: 44 Copynumber: 17.5 Consensus size: 45
32175361 ATCTGATGTG
* * * ** *
32175371 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTAT-TTTA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGAT-CTAAAATCTTCA
* * * * * ** *
32175415 ATCCACTCCACTGTAACTTCAGAGAGTTAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATCTTCA
** * * * ***
32175459 ATCTACTCCGTTATAATCTCAAGGAGATAAGATCT-ATGGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATCTTCA
* *
32175503 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTTTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAA-TCTTCA
* * * * *
32175549 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCT--GA--TGCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATCTTCA
* * * * *** *
32175590 ATCTACTCTACTATAACTTCAGAGAGATAAGATCTTTTAT-TTTA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATCTTCA
** * ** * ** *
32175634 ATCCGCTTCACTGTAATATCAGGGAGATATGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATCTTCA
* * * * *
32175678 ATCTGCTCCGCTATAACCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCT-AAAATCTTCA
* * * * *
32175724 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCT--GA--TGCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATCTTCA
* * * *** *
32175765 ATCTACTCCGCTGTAACTTCAGAGAGATAAGATCTTTTAT-TTTA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATCTTCA
** * * *** **
32175809 ATCCGCTCCACTGTAATCC-CAGAGAGATAGGAT-T-GTGTCTTGG
1 ATCTACTCCACTGTAA-CCTCAGGGAGATAAGATCTAAAATCTTCA
* * ** **
32175852 ATCTGCTCCACTGTAATCTCAATGAGATAAGATCT--CTTGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAAT-CTTCA
* * * * * *
32175896 ATCTGCTCCACTATGACCTCAGGGAGATAAGATCTGAAATTATTCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCT-AAAATCTTCA
* * * * * * *
32175942 GTTTACTCCACTGTAACCTTAGGGAGATAAGACCT--GA--TGCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATCTTCA
* * * * *** *
32175983 ATCTACTCTACTGTAACTTCAGAGAGATAAGAACTTTTAT-TTTA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATCTTCA
** * * * ** **
32176027 ATCCGCTCCACTGTAATCTTAGGGAGATAGGAT-T-ATGTCTTGG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATCTTCA
* * * **
32176070 ATCTGCTCCACTGTAATCTCAAGGAGATAAGATCT--CTTGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAAT-CTTCA
* *
32176114 ATCTGCTCTACTGTAACCTCAG
1 ATCTACTCCACTGTAACCTCAG
32176136 TTATCGTGCT
Statistics
Matches: 535, Mismatches: 158, Indels: 56
0.71 0.21 0.07
Matches are distributed among these distances:
41 95 0.18
42 6 0.01
43 71 0.13
44 255 0.48
45 4 0.01
46 102 0.19
47 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (45 bp):
ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTAAAATCTTCA
Found at i:32175678 original size:175 final size:173
Alignment explanation
Indices: 32175497--32175932 Score: 590
Period size: 175 Copynumber: 2.5 Consensus size: 173
32175487 AAGATCTATG
*
32175497 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTTTTCAGTCTACTCCACTG
1 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCAGTCTACTCCACTG
*
32175562 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCTTT
66 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCCACTATAACTTCAGAGAGATAAGATCTTT
* * * *
32175627 TATTTTAATCCGCTTCACTGTAATATCAGGGAGATATGATTACT
131 TATTTTAATCCGCTCCACTGTAATACCAGAGAGATAGGATT-CT
* * * *
32175671 AGCTTCAATCTGCTCCGCTATAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACT
1 -GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCAGTCTACTCCACT
* *
32175736 GTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCCGCTGTAACTTCAGAGAGATAAGATCTT
65 GTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCCACTATAACTTCAGAGAGATAAGATCTT
* *
32175801 TTATTTTAATCCGCTCCACTGTAATCCCAGAGAGATAGGATTGT
130 TTATTTTAATCCGCTCCACTGTAATACCAGAGAGATAGGATTCT
** * ** * * *
32175845 GTCTTGGATCTGCTCCACTGTAATCTCAATGAGATAAGATCT---CTTGCTTCAATCTGCTCCAC
1 G-CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATT-CTTCAGTCTACTCCAC
* * *
32175907 TATGACCTCAGGGAGATAAGATCTGA
64 TGTAACCTCAGGGAGATAAGACCTGA
32175933 AATTATTCGG
Statistics
Matches: 231, Mismatches: 28, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
171 2 0.01
172 36 0.16
173 1 0.00
174 34 0.15
175 158 0.68
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (173 bp):
GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCAGTCTACTCCACTG
TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCCACTATAACTTCAGAGAGATAAGATCTTT
TATTTTAATCCGCTCCACTGTAATACCAGAGAGATAGGATTCT
Found at i:32175855 original size:87 final size:85
Alignment explanation
Indices: 32175554--32175928 Score: 246
Period size: 87 Copynumber: 4.3 Consensus size: 85
32175544 TTTCAGTCTA
* *
32175554 CTCCACTGTAA-CCTCAGGGAGATAAGACCTGATGC--GATCTACTCTACTATAACTTCAGAGAG
1 CTCCACTGTAATCC-CAGGGAGATAAGA-TTG-TGCTTGATCTACTCCACTATAACTTCAGAGAG
32175616 ATAAGATCTTTTATTTTAATCCG
63 ATAAGATCTTTTATTTTAATCCG
* ** * * * * * * *
32175639 CTTCACTGTAATATCAGGGAGATATGATTACTAGCTTCAATCTGCTCCGCTATAACCTCAGGGAG
1 CTCCACTGTAATCCCAGGGAGATAAGATT-GT-GCTT-GATCTACTCCACTATAACTTCAGAGAG
*** ** **
32175704 ATAAGATCTGAAATTCTTCGGTCTA
63 ATAAGATCTTTTATT-TT-AATCCG
* * *
32175729 CTCCACTGTAA-CCTCAGGGAGATAAGACCTGATGC--GATCTACTCCGCTGTAACTTCAGAGAG
1 CTCCACTGTAATCC-CAGGGAGATAAGA-TTG-TGCTTGATCTACTCCACTATAACTTCAGAGAG
32175791 ATAAGATCTTTTATTTTAATCCG
63 ATAAGATCTTTTATTTTAATCCG
* * * *
32175814 CTCCACTGTAATCCCAGAGAGATAGGATTGTGTCTTGGATCTGCTCCACTGTAA-TCTCA-ATGA
1 CTCCACTGTAATCCCAGGGAGATAAGATTGTG-CTT-GATCTACTCCACTATAACT-TCAGA-GA
* ** * *
32175877 GATAAGATCTCTTGCTTCAATCTG
62 GATAAGATCTTTTATTTTAATCCG
* *
32175901 CTCCACTATGA-CCTCAGGGAGATAAGAT
1 CTCCACTGTAATCC-CAGGGAGATAAGAT
32175929 CTGAAATTAT
Statistics
Matches: 220, Mismatches: 51, Indels: 36
0.72 0.17 0.12
Matches are distributed among these distances:
83 2 0.01
84 5 0.02
85 48 0.22
86 8 0.04
87 94 0.43
88 33 0.15
89 2 0.01
90 26 0.12
91 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (85 bp):
CTCCACTGTAATCCCAGGGAGATAAGATTGTGCTTGATCTACTCCACTATAACTTCAGAGAGATA
AGATCTTTTATTTTAATCCG
Found at i:32175917 original size:218 final size:218
Alignment explanation
Indices: 32175642--32176135 Score: 801
Period size: 218 Copynumber: 2.3 Consensus size: 218
32175632 TAATCCGCTT
* * * * *
32175642 CACTGTAATATCAGGGAGATATGAT-TACTAGCTTCAATCTGCTCCGCTATAACCTCAGGGAGAT
1 CACTGTAATCTCAAGGAGATAAGATCT-CTTGCTTCAATCTGCTCCACTATAACCTCAGGGAGAT
*
32175706 AAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTAC
65 AAGATCTGAAATTATTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTAC
* *
32175771 TCCGCTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAATCCCAGAGAGA
130 TCCACTGTAACTTCAGAGAGATAAGAACTTTTATTTTAATCCGCTCCACTGTAATCCCAGAGAGA
*
32175836 TAGGATTGTGTCTTGGATCTGCTC
195 TAGGATTATGTCTTGGATCTGCTC
* *
32175860 CACTGTAATCTCAATGAGATAAGATCTCTTGCTTCAATCTGCTCCACTATGACCTCAGGGAGATA
1 CACTGTAATCTCAAGGAGATAAGATCTCTTGCTTCAATCTGCTCCACTATAACCTCAGGGAGATA
* *
32175925 AGATCTGAAATTATTCGGTTTACTCCACTGTAACCTTAGGGAGATAAGACCTGATGCGATCTACT
66 AGATCTGAAATTATTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACT
* ** *
32175990 CTACTGTAACTTCAGAGAGATAAGAACTTTTATTTTAATCCGCTCCACTGTAATCTTAGGGAGAT
131 CCACTGTAACTTCAGAGAGATAAGAACTTTTATTTTAATCCGCTCCACTGTAATCCCAGAGAGAT
32176055 AGGATTATGTCTTGGATCTGCTC
196 AGGATTATGTCTTGGATCTGCTC
* *
32176078 CACTGTAATCTCAAGGAGATAAGATCTCTTGCTTCAATCTGCTCTACTGTAACCTCAG
1 CACTGTAATCTCAAGGAGATAAGATCTCTTGCTTCAATCTGCTCCACTATAACCTCAG
32176136 TTATCGTGCT
Statistics
Matches: 254, Mismatches: 21, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
218 253 1.00
219 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (218 bp):
CACTGTAATCTCAAGGAGATAAGATCTCTTGCTTCAATCTGCTCCACTATAACCTCAGGGAGATA
AGATCTGAAATTATTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACT
CCACTGTAACTTCAGAGAGATAAGAACTTTTATTTTAATCCGCTCCACTGTAATCCCAGAGAGAT
AGGATTATGTCTTGGATCTGCTC
Found at i:32176451 original size:19 final size:20
Alignment explanation
Indices: 32176422--32176464 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
32176412 TTTCATCTAG
*
32176422 ATTTCTCTTTTTTCATTTTT
1 ATTTCTCTTTTCTCATTTTT
32176442 ATTTCT-TTTTCTCATTTTT
1 ATTTCTCTTTTCTCATTTTT
32176461 ATTT
1 ATTT
32176465 TGATCTTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (20 bp):
ATTTCTCTTTTCTCATTTTT
Found at i:32176499 original size:22 final size:21
Alignment explanation
Indices: 32176474--32176567 Score: 80
Period size: 22 Copynumber: 4.2 Consensus size: 21
32176464 TTGATCTTGA
32176474 TTTTGATTTTTTTCTTTCTTCT
1 TTTTGATTTTTTTCTTT-TTCT
* * *
32176496 TTTTGTTTTTTTTATTTTTGAT
1 TTTTGATTTTTTTCTTTTT-CT
* *
32176518 TTTTGATTTTTTTCATTTTCA
1 TTTTGATTTTTTTCTTTTTCT
*
32176539 TTTTGACTTTGATTTTGATTTTTCT
1 TTTTGA-TTT--TTTT-CTTTTTCT
32176564 TTTT
1 TTTT
32176568 CTTCCCTTTT
Statistics
Matches: 56, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
21 8 0.14
22 35 0.62
24 4 0.07
25 9 0.16
ACGTcount: A:0.10, C:0.07, G:0.07, T:0.76
Consensus pattern (21 bp):
TTTTGATTTTTTTCTTTTTCT
Found at i:32176505 original size:71 final size:75
Alignment explanation
Indices: 32176429--32176571 Score: 179
Period size: 77 Copynumber: 1.9 Consensus size: 75
32176419 TAGATTTCTC
* *
32176429 TTTTTTCATTTTT-A-TTT-CTTTTTCTCATTTTTATTTTGA-TCTTGATTTTGATTTTT-TTCT
1 TTTTTTCATTTTTGATTTTGATTTTTCTCATTTTCATTTTGACT-TTGATTTTGATTTTTCTT-T
32176489 TTCTTCTTTTTG
64 TTCTTCTTTTTG
* *
32176501 TTTTTTTTATTTTTGATTTTTGATTTTTTTCATTTTCATTTTGACTTTGATTTTGATTTTTCTTT
1 -TTTTTTCATTTTTGA-TTTTGATTTTTCTCATTTTCATTTTGACTTTGATTTTGATTTTTCTTT
32176566 TTCTTC
64 TTCTTC
32176572 CCTTTTTTGA
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
73 12 0.20
74 1 0.02
76 3 0.05
77 41 0.68
78 3 0.05
ACGTcount: A:0.10, C:0.10, G:0.06, T:0.73
Consensus pattern (75 bp):
TTTTTTCATTTTTGATTTTGATTTTTCTCATTTTCATTTTGACTTTGATTTTGATTTTTCTTTTT
CTTCTTTTTG
Found at i:32183898 original size:24 final size:25
Alignment explanation
Indices: 32183866--32183913 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
32183856 AGAAAATATG
*
32183866 TAATTTAGTACTTG-ATTTTTTTTC
1 TAATATAGTACTTGTATTTTTTTTC
* *
32183890 TAATATAGTATTTGTGTTTTTTTT
1 TAATATAGTACTTGTATTTTTTTT
32183914 TGGTCCAATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.21, C:0.04, G:0.10, T:0.65
Consensus pattern (25 bp):
TAATATAGTACTTGTATTTTTTTTC
Found at i:32187624 original size:15 final size:15
Alignment explanation
Indices: 32187604--32187633 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32187594 AGGGTGGAAT
32187604 AATCTAGAAACTAAG
1 AATCTAGAAACTAAG
32187619 AATCTAGAAACTAAG
1 AATCTAGAAACTAAG
32187634 GAAAATGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.20
Consensus pattern (15 bp):
AATCTAGAAACTAAG
Found at i:32190320 original size:3 final size:3
Alignment explanation
Indices: 32190312--32190357 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
32190302 AATAGTATGG
* *
32190312 TAA TAA TAA GTAA -AA -AA TAA TAA TAG TAA TAA TAG TAA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32190356 TA
1 TA
32190358 TTTAAATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 4 0.11
3 30 0.81
4 3 0.08
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:32190891 original size:56 final size:56
Alignment explanation
Indices: 32190829--32190940 Score: 188
Period size: 56 Copynumber: 2.0 Consensus size: 56
32190819 AAAACCTTCC
* *
32190829 CTTTTTTCTCTCAAAGCCCCCTTTGGCCGACTTTGGCTCCGGCGATTTACCGCGGT
1 CTTTTTTCTCTCAAAGCCCCCTTTCGCCGACTTTGGCTCCGGCGATTCACCGCGGT
* *
32190885 CTTTTTTCTCTCAAAGCCCCCTTTCGCCGACTTTGGCTTCGGCGATTCGCCGCGGT
1 CTTTTTTCTCTCAAAGCCCCCTTTCGCCGACTTTGGCTCCGGCGATTCACCGCGGT
32190941 GCCAACCGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.10, C:0.35, G:0.21, T:0.34
Consensus pattern (56 bp):
CTTTTTTCTCTCAAAGCCCCCTTTCGCCGACTTTGGCTCCGGCGATTCACCGCGGT
Found at i:32191887 original size:44 final size:44
Alignment explanation
Indices: 32191814--32191918 Score: 140
Period size: 44 Copynumber: 2.4 Consensus size: 44
32191804 ACTTCACTAC
* *
32191814 AACTTTAGGGAGATAGGATTAGTAACTTCAATCTGCTCCA-TAGT
1 AACTTTAGGGAGATAAGATTAGTAACTTCAACCTGCTCCACT-GT
* * *
32191858 AACTTTAGGGAGATAAGATTGGTAGCTTCAACCTGCTCTACTGT
1 AACTTTAGGGAGATAAGATTAGTAACTTCAACCTGCTCCACTGT
*
32191902 AACTTCAGGGAGATAAG
1 AACTTTAGGGAGATAAG
32191919 GTTTTTGGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 53 0.98
45 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (44 bp):
AACTTTAGGGAGATAAGATTAGTAACTTCAACCTGCTCCACTGT
Found at i:32192071 original size:143 final size:143
Alignment explanation
Indices: 32191902--32192387 Score: 704
Period size: 143 Copynumber: 3.4 Consensus size: 143
32191892 GCTCTACTGT
* ** ** * *
32191902 AACTTCAGGGAGATAAGGTTTTTGGCTTTGATCTACTCCACTACAACTTCAGGAAGATAAGATCC
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCC
* ***
32191967 ACCATAATTTGTAGCTTTAATCTATTCCACTGCAACATTAGGGAAATAAGATTCGCTGTCTTCAG
66 ACCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAG
* * *
32192032 TTTGCTTCGCTGT
131 TATGCTCCGCTGC
* * *
32192045 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTCCATTGCAACTTCAAGAAGATAAGATCC
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCC
* * * *
32192110 GCCATAATTTTTAGCTTTAATCTGTTCCACTGTAACGCCAGGGAAATAAGATTCGCTGTCTTCAA
66 ACCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAG
32192175 TATGCTCCGCTGC
131 TATGCTCCGCTGC
* *
32192188 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAAAT-C
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCC
* *
32192252 AGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGAGAAATAAGATTCGCTGACTTCA
66 A-CCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCA
* *
32192317 GTCTACTCCGCTGC
130 GTATGCTCCGCTGC
*
32192331 AACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGA
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGA
32192388 AAGCTCAAGG
Statistics
Matches: 306, Mismatches: 36, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
142 1 0.00
143 305 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (143 bp):
AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCC
ACCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAG
TATGCTCCGCTGC
Found at i:32192225 original size:44 final size:44
Alignment explanation
Indices: 32192169--32192383 Score: 142
Period size: 44 Copynumber: 4.6 Consensus size: 44
32192159 GATTCGCTGT
* *
32192169 CTTCAATATGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGG
* * * * *
32192213 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAAATCAGCCATAATTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGAT---A--AGGC-----TGGTGG
* * ** * * ** * *
32192267 CTTTAATCTGTTCCACTGCAACGCCAGAGAAATAAGATTCGCTGA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCT-GGTGG
* * * *
32192312 CTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGTTGGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGG
32192356 CTTCAATCTGCTCCACTGCAACTTCAGG
1 CTTCAATCTGCTCCACTGCAACTTCAGG
32192384 AAGAAAGCTC
Statistics
Matches: 124, Mismatches: 36, Indels: 22
0.68 0.20 0.12
Matches are distributed among these distances:
44 58 0.47
45 30 0.24
47 1 0.01
49 5 0.04
51 1 0.01
54 29 0.23
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGG
Found at i:32193507 original size:7 final size:7
Alignment explanation
Indices: 32193495--32193525 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
32193485 TACGGGCTTA
32193495 GGGAAAT
1 GGGAAAT
32193502 GGGAAAT
1 GGGAAAT
32193509 GGGAAAT
1 GGGAAAT
32193516 GGGAAAT
1 GGGAAAT
32193523 GGG
1 GGG
32193526 GAGGGGAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.48, T:0.13
Consensus pattern (7 bp):
GGGAAAT
Found at i:32193534 original size:13 final size:14
Alignment explanation
Indices: 32193495--32193536 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
32193485 TACGGGCTTA
*
32193495 GGGAAATGGGAAAT
1 GGGAAAGGGGAAAT
*
32193509 GGGAAATGGGAAAT
1 GGGAAAGGGGAAAT
*
32193523 GGG-GAGGGGAAAT
1 GGGAAAGGGGAAAT
32193536 G
1 G
32193537 AGAATTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 9 0.35
14 17 0.65
ACGTcount: A:0.38, C:0.00, G:0.50, T:0.12
Consensus pattern (14 bp):
GGGAAAGGGGAAAT
Found at i:32198031 original size:36 final size:36
Alignment explanation
Indices: 32197991--32198079 Score: 151
Period size: 36 Copynumber: 2.5 Consensus size: 36
32197981 TAAACTTTTT
32197991 AAAACGACGCCGTTTTGCCTTTAGGGGACAGGTGCC
1 AAAACGACGCCGTTTTGCCTTTAGGGGACAGGTGCC
* **
32198027 AAAACGATGCCGTTTTGCCTTTAGGGGTTAGGTGCC
1 AAAACGACGCCGTTTTGCCTTTAGGGGACAGGTGCC
32198063 AAAACGACGCCGTTTTG
1 AAAACGACGCCGTTTTG
32198080 GCCCTGACCC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (36 bp):
AAAACGACGCCGTTTTGCCTTTAGGGGACAGGTGCC
Found at i:32198427 original size:3 final size:3
Alignment explanation
Indices: 32198407--32198499 Score: 123
Period size: 3 Copynumber: 30.3 Consensus size: 3
32198397 TTTAGTAATT
*
32198407 TTA TTA TTTA GTTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** *
32198454 TTA TTA TTA TTA TTA TTA TTA TTA ATA TTA TGG TTA TTA TTG TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
32198500 GTTTTTATTT
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
3 73 0.94
4 5 0.06
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:32198891 original size:25 final size:22
Alignment explanation
Indices: 32198820--32198893 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 22
32198810 ATGTATGTCC
*
32198820 TATATATACGTTTTAATTTTC-A
1 TATATATA-TTTTTAATTTTCTA
* **
32198842 TATATATATGTTTAATAATCTTA
1 TATATATATTTTTAATTTTC-TA
32198865 TATATGCATATTTTTAATTTTC-A
1 TATAT--ATATTTTTAATTTTCTA
32198888 TATATA
1 TATATA
32198894 CATGCTCACA
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
21 9 0.22
22 8 0.20
23 12 0.29
25 12 0.29
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (22 bp):
TATATATATTTTTAATTTTCTA
Found at i:32199102 original size:18 final size:19
Alignment explanation
Indices: 32199057--32199105 Score: 75
Period size: 18 Copynumber: 2.7 Consensus size: 19
32199047 ACTTAAGTGC
*
32199057 TTTAATTTTTATTTGTTTA
1 TTTACTTTTTATTTGTTTA
32199076 TTTAC-TTTTATTTGTTTA
1 TTTACTTTTTATTTGTTTA
32199094 TTT-CTTTTTATT
1 TTTACTTTTTATT
32199106 ATATATTTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 1 0.04
18 23 0.82
19 4 0.14
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (19 bp):
TTTACTTTTTATTTGTTTA
Found at i:32201419 original size:14 final size:14
Alignment explanation
Indices: 32201396--32201425 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32201386 TGTTGCGTTC
*
32201396 TTAGTTAATTTAGA
1 TTAGTAAATTTAGA
32201410 TTAGTAAATTTAGA
1 TTAGTAAATTTAGA
32201424 TT
1 TT
32201426 CAAACAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (14 bp):
TTAGTAAATTTAGA
Found at i:32202047 original size:17 final size:16
Alignment explanation
Indices: 32202019--32202050 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
32202009 GAAACTCCTA
32202019 TTAAATTATAATTATT
1 TTAAATTATAATTATT
32202035 TTAAATATATAATTAT
1 TTAAAT-TATAATTAT
32202051 CATAATTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAAATTATAATTATT
Found at i:32202129 original size:23 final size:24
Alignment explanation
Indices: 32202078--32202132 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 24
32202068 TTTATTTTTA
* *
32202078 ATTAATAA-TTTTAAATTAAATAT
1 ATTAATAATTTTTAAATAAAAAAT
*
32202101 AATAATAATTTTTAAATAAAAAAT
1 ATTAATAATTTTTAAATAAAAAAT
32202125 -TTAATAAT
1 ATTAATAAT
32202133 ATAATAGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 14 0.52
24 13 0.48
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
ATTAATAATTTTTAAATAAAAAAT
Found at i:32202129 original size:26 final size:23
Alignment explanation
Indices: 32202074--32202133 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 23
32202064 TTATTTTATT
*
32202074 TTTAATTAATAATTTTAAATTAAA
1 TTTAA-TAATAATTTTAAATAAAA
*
32202098 TATAATAATAATTTTTAAATAAAAAA
1 TTTAATAATAA-TTTTAAAT--AAAA
32202124 TTTAATAATA
1 TTTAATAATA
32202134 TAATAGAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 6 0.20
24 12 0.40
26 12 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TTTAATAATAATTTTAAATAAAA
Found at i:32204046 original size:8 final size:8
Alignment explanation
Indices: 32204035--32204061 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
32204025 TTTAAAATTC
32204035 ATTTTAAA
1 ATTTTAAA
32204043 ATTTTAAA
1 ATTTTAAA
32204051 ATTTTAAA
1 ATTTTAAA
32204059 ATT
1 ATT
32204062 AAAAAATCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
ATTTTAAA
Found at i:32204067 original size:16 final size:16
Alignment explanation
Indices: 32204035--32204068 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32204025 TTTAAAATTC
**
32204035 ATTTTAAAATTTTAAA
1 ATTTTAAAATTAAAAA
32204051 ATTTTAAAATTAAAAA
1 ATTTTAAAATTAAAAA
32204067 AT
1 AT
32204069 CTAATTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTTTAAAATTAAAAA
Found at i:32212093 original size:29 final size:30
Alignment explanation
Indices: 32212034--32212091 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
32212024 TCCGAGCCTT
*
32212034 GGGGCAAAAATGTAATTATGCAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
32212064 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
32212092 AGAGTTGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.29
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:32212502 original size:50 final size:50
Alignment explanation
Indices: 32212427--32212715 Score: 443
Period size: 50 Copynumber: 5.7 Consensus size: 50
32212417 ACTTGGGTAA
32212427 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
32212477 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCATCGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
**
32212527 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
32212578 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGACACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
**
32212628 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
32212679 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCAT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCAT
32212716 CTAGTAAACT
Statistics
Matches: 212, Mismatches: 25, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
50 124 0.58
51 88 0.42
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.19
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:32212607 original size:101 final size:101
Alignment explanation
Indices: 32212432--32212715 Score: 550
Period size: 101 Copynumber: 2.8 Consensus size: 101
32212422 GGTAAAGAGG
32212432 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCTGTAAGACCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCTGTAAGACCA
* *
32212497 TGTCTGGGACATGGCATGGGCATCGACATGAGAACA
66 TGTCTGGGACATGGCATGGGCACCGACACGAGAACA
32212533 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCTGTAAGACCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCTGTAAGACCA
32212598 TGTCTGGGACATGGCATGGGCACCGACACGAGAACA
66 TGTCTGGGACATGGCATGGGCACCGACACGAGAACA
32212634 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCTGTAAGACCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCTGTAAGACCA
32212699 TGTCTGGGACATGGCAT
66 TGTCTGGGACATGGCAT
32212716 CTAGTAAACT
Statistics
Matches: 181, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 181 1.00
ACGTcount: A:0.26, C:0.25, G:0.30, T:0.20
Consensus pattern (101 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCTGTAAGACCA
TGTCTGGGACATGGCATGGGCACCGACACGAGAACA
Found at i:32214839 original size:25 final size:24
Alignment explanation
Indices: 32214811--32214866 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 24
32214801 AAAAATTAAG
32214811 TAAATAT-TAGGCAAAACATTTAAAA
1 TAAATATATAGGCAAAAC--TTAAAA
* *
32214836 TAAATAATATATGTAAAACTTAAAA
1 TAAAT-ATATAGGCAAAACTTAAAA
32214861 TAAATA
1 TAAATA
32214867 ACAATAATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 1 0.04
25 16 0.59
26 2 0.07
27 8 0.30
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.30
Consensus pattern (24 bp):
TAAATATATAGGCAAAACTTAAAA
Found at i:32220292 original size:3 final size:3
Alignment explanation
Indices: 32220284--32220453 Score: 74
Period size: 3 Copynumber: 55.0 Consensus size: 3
32220274 ATAAATTTGA
** * * *
32220284 TAT TAT TAT TAT TAT TAT TAT TAT T-T CGT TAC TAT TAT TAC TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * * *
32220331 TAC TAT TAC TCT TTT TAC TAC TAT TAT TAT TAT TGT TAC TCT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * ** *
32220377 TATT TAT GTAC TAC TAT TAT TCG T-T TAT TAAT GTAT GAT TATT TAT
1 TA-T TAT -TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TA-T TAT
* *
32220423 TAT TAT TCT TAGT TAT TAT TAT TAT CAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
32220454 ATATATATAC
Statistics
Matches: 124, Mismatches: 35, Indels: 16
0.71 0.20 0.09
Matches are distributed among these distances:
2 2 0.02
3 102 0.82
4 19 0.15
5 1 0.01
ACGTcount: A:0.27, C:0.09, G:0.05, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:32220370 original size:36 final size:39
Alignment explanation
Indices: 32220284--32220397 Score: 98
Period size: 36 Copynumber: 3.1 Consensus size: 39
32220274 ATAAATTTGA
* * *
32220284 TATTATTATTATTATTATTAT-TATTT-CGT--TACTAT
1 TATTACTATTATTACTATTATCTATTTATGTACTACTAT
* *
32220319 TATTACTGTTATTACTATTA-CTCTTT-T-TACTACTAT
1 TATTACTATTATTACTATTATCTATTTATGTACTACTAT
* * * *
32220355 TATTATTATTGTTACTCTTATTTATTTATGTACTACTAT
1 TATTACTATTATTACTATTATCTATTTATGTACTACTAT
32220394 TATT
1 TATT
32220398 CGTTTATTAA
Statistics
Matches: 62, Mismatches: 11, Indels: 8
0.77 0.14 0.10
Matches are distributed among these distances:
34 1 0.02
35 21 0.34
36 22 0.35
37 4 0.06
38 1 0.02
39 13 0.21
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.60
Consensus pattern (39 bp):
TATTACTATTATTACTATTATCTATTTATGTACTACTAT
Done.