Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35726063
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1821929 characters in sequence are not A, C, G, or T
File 101 of 109
Found at i:32221548 original size:14 final size:14
Alignment explanation
Indices: 32221527--32221567 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
32221517 TCGCCATTAT
32221527 TTTC-TTTTGTCTA
1 TTTCTTTTTGTCTA
*
32221540 TTTCTTTTTGT-TT
1 TTTCTTTTTGTCTA
32221553 TTTCTTCTTTGTCTA
1 TTTCTT-TTTGTCTA
32221568 CTGTTATTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 11 0.48
14 11 0.48
15 1 0.04
ACGTcount: A:0.05, C:0.15, G:0.07, T:0.73
Consensus pattern (14 bp):
TTTCTTTTTGTCTA
Found at i:32221591 original size:28 final size:26
Alignment explanation
Indices: 32221526--32221592 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 26
32221516 TTCGCCATTA
*
32221526 TTTTCTTTTGTCTATTTCTTTTTGTT
1 TTTTCTTTTGTCTATTTATTTTTGTT
32221552 TTTTCTTCTTTGTCTACTGTTATTGTTTG-T
1 TTTTC-T-TTTGTCTA-T-TTATT-TTTGTT
32221582 TTTTCTTTTGT
1 TTTTCTTTTGT
32221593 TTTCTTTTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
26 5 0.14
27 1 0.03
28 13 0.37
29 2 0.06
30 10 0.29
31 4 0.11
ACGTcount: A:0.04, C:0.12, G:0.10, T:0.73
Consensus pattern (26 bp):
TTTTCTTTTGTCTATTTATTTTTGTT
Found at i:32228578 original size:16 final size:17
Alignment explanation
Indices: 32228557--32228589 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
32228547 GTTGAGATAA
*
32228557 TTTATTTGAAT-ATTTT
1 TTTATTTAAATAATTTT
32228573 TTTATTTAAATAATTTT
1 TTTATTTAAATAATTTT
32228590 GGAGTTTGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTATTTAAATAATTTT
Found at i:32229186 original size:3 final size:3
Alignment explanation
Indices: 32229178--32229236 Score: 73
Period size: 3 Copynumber: 19.7 Consensus size: 3
32229168 AGTATATCAT
* * * *
32229178 ATG ATG ATG TTG ATG ATG TTG ATA ACG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
*
32229226 ATG GTG ATG AT
1 ATG ATG ATG AT
32229237 AATAAAATGC
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.31, C:0.02, G:0.32, T:0.36
Consensus pattern (3 bp):
ATG
Found at i:32229641 original size:15 final size:17
Alignment explanation
Indices: 32229602--32229646 Score: 58
Period size: 15 Copynumber: 2.7 Consensus size: 17
32229592 GTTTCATATA
32229602 GGAAGAGAAAAAACCAGT
1 GGAAGAGAAAAAA-CAGT
*
32229620 TGAAGAGAAAAAA-A-T
1 GGAAGAGAAAAAACAGT
32229635 GGAAGAGAAAAA
1 GGAAGAGAAAAA
32229647 GGTTGAAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 12 0.48
16 1 0.04
18 12 0.48
ACGTcount: A:0.62, C:0.04, G:0.27, T:0.07
Consensus pattern (17 bp):
GGAAGAGAAAAAACAGT
Found at i:32229654 original size:15 final size:15
Alignment explanation
Indices: 32229603--32229655 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
32229593 TTTCATATAG
32229603 GAAGAGAAAAAACCAGTT
1 GAAGAG-AAAAA--AGTT
* *
32229621 GAAGAGAAAAAAATG
1 GAAGAGAAAAAAGTT
*
32229636 GAAGAGAAAAAGGTT
1 GAAGAGAAAAAAGTT
32229651 GAAGA
1 GAAGA
32229656 TGATGGAAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 19 0.63
17 5 0.17
18 6 0.20
ACGTcount: A:0.58, C:0.04, G:0.28, T:0.09
Consensus pattern (15 bp):
GAAGAGAAAAAAGTT
Found at i:32230382 original size:2 final size:2
Alignment explanation
Indices: 32230338--32230364 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32230328 GGGAGCCAAT
32230338 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
32230365 TATTGTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32240199 original size:4 final size:4
Alignment explanation
Indices: 32240190--32240215 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
32240180 AGAAAATAAA
32240190 ATTT ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT AT
32240216 GAAATTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:32244218 original size:22 final size:22
Alignment explanation
Indices: 32244179--32244221 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
32244169 TGGCATTAGT
32244179 GTAATTTTTAAAGTTAGGTAAGG
1 GTAATTTTTAAAG-TAGGTAAGG
32244202 GTAATTTTGTAAA-TAGGTAA
1 GTAATTTT-TAAAGTAGGTAA
32244222 TTAAAGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.37
23 8 0.42
24 4 0.21
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (22 bp):
GTAATTTTTAAAGTAGGTAAGG
Found at i:32245156 original size:25 final size:25
Alignment explanation
Indices: 32245104--32245216 Score: 99
Period size: 25 Copynumber: 4.6 Consensus size: 25
32245094 TTACCGATTC
* * * *
32245104 CAGCTCTTATGAGCTTATCGATACT
1 CAGCTCGTATGAGCTTACCGTTATT
*
32245129 CAGCTCGTATGAGTTTACCGTTATT
1 CAGCTCGTATGAGCTTACCGTTATT
* *
32245154 CAGCGTAG-AGGAGCTTACCGTTATT
1 CAGC-TCGTATGAGCTTACCGTTATT
*
32245179 CAGCTCAG-AGGAGCTTACCGTT-TAT
1 CAGCTC-GTATGAGCTTACCGTTAT-T
32245204 -AGCTCGTATGAGC
1 CAGCTCGTATGAGC
32245217 ATACATGTGC
Statistics
Matches: 74, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
23 1 0.01
24 12 0.16
25 59 0.80
26 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGTTATT
Found at i:32251029 original size:24 final size:25
Alignment explanation
Indices: 32250976--32251036 Score: 74
Period size: 23 Copynumber: 2.6 Consensus size: 25
32250966 AGACCAGAAT
*
32250976 TAAAATT-TTTAAAAAATAAATAGA
1 TAAAATTATTAAAAAAATAAATAGA
*
32251000 TTAAATTATTAAAAAAATAAA-A-A
1 TAAAATTATTAAAAAAATAAATAGA
*
32251023 TAAAAATATTAAAA
1 TAAAATTATTAAAA
32251037 TTTAAATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 13 0.41
24 7 0.22
25 12 0.38
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (25 bp):
TAAAATTATTAAAAAAATAAATAGA
Found at i:32251664 original size:16 final size:17
Alignment explanation
Indices: 32251643--32251675 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
32251633 TAAATAATTT
*
32251643 ATTAAAAGTT-TAAAAA
1 ATTAAAAATTATAAAAA
32251659 ATTAAAAATTATAAAAA
1 ATTAAAAATTATAAAAA
32251676 CCAACTCGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (17 bp):
ATTAAAAATTATAAAAA
Found at i:32252757 original size:14 final size:14
Alignment explanation
Indices: 32252721--32252763 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
32252711 AAGGAGGCGC
32252721 AGAAGGAAGAAAAAG
1 AGAA-GAAGAAAAAG
*
32252736 -GAAAAAGAAAAAG
1 AGAAGAAGAAAAAG
*
32252749 AGAAGAAGAAGAAG
1 AGAAGAAGAAAAAG
32252763 A
1 A
32252764 AGAGGGAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 9 0.38
14 15 0.62
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (14 bp):
AGAAGAAGAAAAAG
Found at i:32253289 original size:38 final size:38
Alignment explanation
Indices: 32253247--32253323 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
32253237 CGAAAAAAAG
32253247 AAAAATACGAACAAAGGGCCAAAATAAGGGGTTTTTTT
1 AAAAATACGAACAAAGGGCCAAAATAAGGGGTTTTTTT
32253285 AAAAATACGAACAAAGGGCCAAAATAAGGGGTTTTTTT
1 AAAAATACGAACAAAGGGCCAAAATAAGGGGTTTTTTT
32253323 A
1 A
32253324 CTAAATTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.45, C:0.10, G:0.21, T:0.23
Consensus pattern (38 bp):
AAAAATACGAACAAAGGGCCAAAATAAGGGGTTTTTTT
Found at i:32253460 original size:158 final size:158
Alignment explanation
Indices: 32253285--32254425 Score: 1569
Period size: 158 Copynumber: 7.3 Consensus size: 158
32253275 GGGTTTTTTT
32253285 AAAAATACGAACAAAGGGCCAAAATAAGGGGTTTTTTTACTAAATTTATA-AAAACAACATA-AA
1 AAAAATACGAACAAAGGGCCAAAATAA-GGGTTTTTTTACTAAATTTATATAAAA-AACATACAA
* *
32253348 AATAATACATTTCAAACATTATGTACTAAAATAATACAAAATAATAAAATACGAAAATAGTATAT
64 ATTAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATAT
*
32253413 TTTTTGAAAGTAATAAAATCCAAAAATAAG
129 TTTTTGAAAGTAATAAAATCCGAAAATAAG
* *
32253443 AAAAATACGAATAAAGGGCCAAAATAAGAG-TTTTTTACTAAATTTATATAAAAAACATACTAAA
1 AAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTTACTAAATTTATATAAAAAACATAC-AAA
*
32253507 TTAATACATTTCAAACATTATGTACTAAAATAATATAAAATAAT--AA-A--AAAATAGTGTATT
65 TTAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATT
*
32253567 TTTTGAAAATAATAAAATCCGAAAATAAG
130 TTTTGAAAGTAATAAAATCCGAAAATAAG
* *
32253596 TAAAATACGAACAAAGGGCCAAAATAA-GGTTTTTTTACTAAATTTATATAAAAAACACACTAAA
1 AAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTTACTAAATTTATATAAAAAACATAC-AAA
* * * *
32253660 TTAATATATTTCAATCTTTATGTACTAAAATAATATAAAATAATAAAATACAAAAATAGTATATT
65 TTAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATT
*
32253725 TTTTGAAAGTAATAAAATCTGAAAATAAG
130 TTTTGAAAGTAATAAAATCCGAAAATAAG
* *
32253754 AAAAATACGAACAAAGGGCCAAAATAA-GGTTTTTTTACTAAATTTATATAAAACACACACTAAA
1 AAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTTACTAAATTTATATAAAAAACATAC-AAA
* * *
32253818 TTAATACATTTCAAACTTTATGTACCAAAATAATATAAAATAATAAAATACGAAAATAATATATT
65 TTAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATT
* *
32253883 TTTTCAAAGTGATAAAATCCGAAAATAAG
130 TTTTGAAAGTAATAAAATCCGAAAATAAG
*
32253912 AAAAATACGAACAAAGGGCCAAAATAAGGGGTTTTTTTACTAAATTTATATAAAAAACACACTAA
1 AAAAATACGAACAAAGGGCCAAAATAA-GGGTTTTTTTACTAAATTTATATAAAAAACATAC-AA
* *
32253977 ATTAATACATTTCAAATATTATGTACT---A-AA-AT--AAT-ATAAAATACGAAAATAATATAT
64 ATTAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATAT
* *
32254034 TTTTTTAAAGTAATAAAATCCAAAAATAAG
129 TTTTTGAAAGTAATAAAATCCGAAAATAAG
* ** *
32254064 AAAAATATGAACAAAGGGCCAAAATAATGATTTTTTTTACTAAATTTATATAAAAAAACACACTA
1 AAAAATACGAACAAAGGGCCAAAATAA-GGGTTTTTTTACTAAATTTATAT-AAAAAACATAC-A
* *
32254129 AATTAATACATTTCAAACTTTATGTACTAAAATAATATAAAATAATAAAATACGAAAAGAGTATA
63 AATTAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATA
*
32254194 TTTTTTGAAAGTAATAAAATCTGAAAATAAG
128 TTTTTTGAAAGTAATAAAATCCGAAAATAAG
* * * *
32254225 AAAAATACGGACAAAGGGCCAAAATAAGGG-TTATTTACTAAATTTATATAAGAAAATACACTAA
1 AAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTTACTAAATTTATATAA-AAAACATAC-AA
* *
32254289 ATTAATACATTTCAAACATTATGTATTAAAATAATATAAAAATAATAAAATTA-GAAAATAGAAT
64 ATTAATACATTTCAAACATTATGTACTAAAATAATAT-AAAATAATAAAA-TACGAAAATAGTAT
* ***
32254353 ATTTTTTTTAAAGTAATAAAAT-CG--GGGAA-
127 A-TTTTTTGAAAGTAATAAAATCCGAAAATAAG
*
32254382 AAAAATACGAACAAAGGGCCGAAATAAGGG--TTTTTACTAAATTT
1 AAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTTACTAAATTT
32254426 GTTTTGAAGT
Statistics
Matches: 896, Mismatches: 63, Indels: 50
0.89 0.06 0.05
Matches are distributed among these distances:
152 97 0.11
153 180 0.20
155 5 0.01
156 43 0.05
157 37 0.04
158 291 0.32
159 64 0.07
160 86 0.10
161 93 0.10
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.30
Consensus pattern (158 bp):
AAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTTACTAAATTTATATAAAAAACATACAAAT
TAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATTT
TTTGAAAGTAATAAAATCCGAAAATAAG
Found at i:32253592 original size:16 final size:17
Alignment explanation
Indices: 32253571--32253606 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
32253561 TGTATTTTTT
*
32253571 GAAAATAA-TAAAATCC
1 GAAAATAAGTAAAATAC
32253587 GAAAATAAGTAAAATAC
1 GAAAATAAGTAAAATAC
32253604 GAA
1 GAA
32253607 CAAAGGGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.64, C:0.08, G:0.11, T:0.17
Consensus pattern (17 bp):
GAAAATAAGTAAAATAC
Found at i:32253702 original size:311 final size:314
Alignment explanation
Indices: 32253285--32254425 Score: 1631
Period size: 311 Copynumber: 3.6 Consensus size: 314
32253275 GGGTTTTTTT
*
32253285 AAAAATACGAACAAAGGGCCAAAATAAGGGGTTTTTTTACTAAATTTATA-AAAACA-ACA-TAA
1 AAAAATACGAACAAAGGGCCAAAATAA-GGGTTTTTTTACTAAATTTATATAAAAAACACACT-A
* *
32253347 AAATAATACATTTCAAACATTATGTACTAAAATAATACAAAATAATAAAATACGAAAATAGTATA
64 AATTAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATA
*
32253412 TTTTTTGAAAGTAATAAAATCCAAAAATAAGAAAAATACGAATAAAGGGCCAAAATAAGAGTTTT
129 TTTTTTGAAAGTAATAAAATCCAAAAATAAGAAAAATACGAACAAAGGGCCAAAATAAG-GTTTT
* *
32253477 TTACTAAATTTATATAAAAAACATACTAAATTAATACATTTCAAACATTATGTACTAAAATAATA
193 TTACTAAATTTATATAAAAAACACACTAAATTAATACATTTCAAACTTTATGTACTAAAATAATA
* *
32253542 TAAAATAAT-AA-A-AAAATAGTGTATTTTTTGAAAATAATAAAATCCGAAAATAAG
258 TAAAATAATAAATACAAAATAGTATATTTTTTGAAAGTAATAAAATCCGAAAATAAG
*
32253596 TAAAATACGAACAAAGGGCCAAAATAA-GGTTTTTTTACTAAATTTATATAAAAAACACACTAAA
1 AAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTTACTAAATTTATATAAAAAACACACTAAA
* * * *
32253660 TTAATATATTTCAATCTTTATGTACTAAAATAATATAAAATAATAAAATACAAAAATAGTATATT
66 TTAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATT
**
32253725 TTTTGAAAGTAATAAAATCTGAAAATAAGAAAAATACGAACAAAGGGCCAAAATAAGGTTTTTTT
131 TTTTGAAAGTAATAAAATCCAAAAATAAGAAAAATACGAACAAAGGGCCAAAATAAGG-TTTTTT
* *
32253790 ACTAAATTTATATAAAACACACACTAAATTAATACATTTCAAACTTTATGTACCAAAATAATATA
195 ACTAAATTTATATAAAAAACACACTAAATTAATACATTTCAAACTTTATGTACTAAAATAATATA
* * *
32253855 AAATAATAAAATACGAAAATAATATATTTTTTCAAAGTGATAAAATCCGAAAATAAG
260 AAATAAT-AAATAC-AAAATAGTATATTTTTTGAAAGTAATAAAATCCGAAAATAAG
32253912 AAAAATACGAACAAAGGGCCAAAATAAGGGGTTTTTTTACTAAATTTATATAAAAAACACACTAA
1 AAAAATACGAACAAAGGGCCAAAATAA-GGGTTTTTTTACTAAATTTATATAAAAAACACACTAA
* *
32253977 ATTAATACATTTCAAATATTATGTACT---A-AA-AT--AAT-ATAAAATACGAAAATAATATAT
65 ATTAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATAT
* * *
32254034 TTTTTTAAAGTAATAAAATCCAAAAATAAGAAAAATATGAACAAAGGGCCAAAATAATGATTTTT
130 TTTTTGAAAGTAATAAAATCCAAAAATAAGAAAAATACGAACAAAGGGCCAAAATAA-G--GTTT
32254099 TTTACTAAATTTATATAAAAAAACACACTAAATTAATACATTTCAAACTTTATGTACTAAAATAA
192 TTTACTAAATTTATAT-AAAAAACACACTAAATTAATACATTTCAAACTTTATGTACTAAAATAA
* *
32254164 TATAAAATAATAAAATACGAAAAGAGTATATTTTTTGAAAGTAATAAAATCTGAAAATAAG
256 TATAAAATAAT-AAATAC-AAAATAGTATATTTTTTGAAAGTAATAAAATCCGAAAATAAG
* * *
32254225 AAAAATACGGACAAAGGGCCAAAATAAGGG-TTATTTACTAAATTTATATAAGAAAATACACTAA
1 AAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTTACTAAATTTATATAA-AAAACACACTAA
* *
32254289 ATTAATACATTTCAAACATTATGTATTAAAATAATATAAAAATAATAAAATTA-GAAAATAGAAT
65 ATTAATACATTTCAAACATTATGTACTAAAATAATAT-AAAATAATAAAA-TACGAAAATAGTAT
* **** * *
32254353 ATTTTTTTTAAAGTAATAAAAT-C--GGGGAA-AAAAATACGAACAAAGGGCCGAAATAAGGGTT
128 A-TTTTTTGAAAGTAATAAAATCCAAAAATAAGAAAAATACGAACAAAGGGCCAAAATAAGGTTT
32254414 TTTACTAAATTT
192 TTTACTAAATTT
32254426 GTTTTGAAGT
Statistics
Matches: 749, Mismatches: 54, Indels: 50
0.88 0.06 0.06
Matches are distributed among these distances:
309 21 0.03
310 79 0.11
311 243 0.32
312 59 0.08
313 132 0.18
314 3 0.00
315 16 0.02
316 65 0.09
317 3 0.00
318 84 0.11
319 2 0.00
320 3 0.00
321 17 0.02
322 22 0.03
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.30
Consensus pattern (314 bp):
AAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTTACTAAATTTATATAAAAAACACACTAAA
TTAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATT
TTTTGAAAGTAATAAAATCCAAAAATAAGAAAAATACGAACAAAGGGCCAAAATAAGGTTTTTTA
CTAAATTTATATAAAAAACACACTAAATTAATACATTTCAAACTTTATGTACTAAAATAATATAA
AATAATAAATACAAAATAGTATATTTTTTGAAAGTAATAAAATCCGAAAATAAG
Found at i:32254200 original size:471 final size:466
Alignment explanation
Indices: 32253285--32254425 Score: 1744
Period size: 471 Copynumber: 2.4 Consensus size: 466
32253275 GGGTTTTTTT
32253285 AAAAATACGAACAAAGGGCCAAAATAAGGGGTTTTTTTACTAAATTTATA-AAAACAACA-TAAA
1 AAAAATACGAACAAAGGGCCAAAATAA--GGTTTTTTTACTAAATTTATATAAAACAACACT-AA
* * *
32253348 AATAATACATTTCAAACATTATGTACTAAAATAATACAAAATAATAAAATACGAAAATAGTATAT
63 ATTAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATATAT
* * * *
32253413 TTTTTGAAAGTAATAAAATCCAAAAATAAGAAAAATACGAATAAAGGGCCAAAATAAGAGTTTTT
128 TTTTTCAAAGTAATAAAATCCGAAAATAAGAAAAATACGAACAAAGGGCCAAAATAAGGGTTTTT
*
32253478 TACTAAATTTATATAAAAAACATACTAAATTAATACATTTCAAACATTATGTACTAAAATAATAT
193 TACTAAATTTATATAAAAAACACACTAAATTAATACATTTCAAACATTATGTACTAAAATAATAT
* * *
32253543 AAAATAATAAAAAAATAGTGTATTTTTTGAAAATAATAAAATCCGAAAATAAGTAAAATACGAAC
258 AAAATAAGAAAAAAATA--GTATTTTTTGAAAATAATAAAATCCAAAAATAAGAAAAATACGAAC
*
32253608 AAAGGGCCAAAATAAGGTTTTTTTACTAAATTTATATAAAAAACACACTAAATTAATATATTTCA
321 AAAGGGCCAAAATAAGGTTTTTTTACTAAATTTATATAAAAAACACACTAAATTAATACATTTCA
* *
32253673 ATCTTTATGTACTAAAATAATATAAAATAATAAAATACAAAAATAGTATATTTTTTGAAAGTAAT
386 AACTTTATGTACTAAAATAATATAAAATAATAAAATACAAAAAGAGTATATTTTTTGAAAGTAAT
32253738 AAAATCTGAAAATAAG
451 AAAATCTGAAAATAAG
32253754 AAAAATACGAACAAAGGGCCAAAATAAGGTTTTTTTACTAAATTTATATAAAACACACACTAAAT
1 AAAAATACGAACAAAGGGCCAAAATAAGGTTTTTTTACTAAATTTATATAAAACA-ACACTAAAT
* *
32253819 TAATACATTTCAAACTTTATGTACCAAAATAATATAAAATAATAAAATACGAAAATAATATATTT
65 TAATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATATATTT
*
32253884 TTTCAAAGTGATAAAATCCGAAAATAAGAAAAATACGAACAAAGGGCCAAAATAAGGGGTTTTTT
130 TTTCAAAGTAATAAAATCCGAAAATAAGAAAAATACGAACAAAGGGCCAAAATAA-GGG-TTTTT
*
32253949 TACTAAATTTATATAAAAAACACACTAAATTAATACATTTCAAATATTATGTACTAAAATAATAT
193 TACTAAATTTATATAAAAAACACACTAAATTAATACATTTCAAACATTATGTACTAAAATAATAT
* * * * *
32254014 AAAATACGAAAATAATA-TATTTTTTTAAAGTAATAAAATCCAAAAATAAGAAAAATATGAACAA
258 AAAATAAGAAAAAAATAGTATTTTTTGAAAATAATAAAATCCAAAAATAAGAAAAATACGAACAA
*
32254078 AGGGCCAAAATAATGATTTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATACATTTC
323 AGGGCCAAAATAA-G-GTTTTTTTACTAAATTTATAT-AAAAAACACACTAAATTAATACATTTC
*
32254143 AAACTTTATGTACTAAAATAATATAAAATAATAAAATACGAAAAGAGTATATTTTTTGAAAGTAA
385 AAACTTTATGTACTAAAATAATATAAAATAATAAAATACAAAAAGAGTATATTTTTTGAAAGTAA
32254208 TAAAATCTGAAAATAAG
450 TAAAATCTGAAAATAAG
* * * *
32254225 AAAAATACGGACAAAGGGCCAAAATAAGGGTTATTTACTAAATTTATATAAGAAAATACACTAAA
1 AAAAATACGAACAAAGGGCCAAAATAAGGTTTTTTTACTAAATTTATATAA-AACA-ACACTAAA
*
32254290 TTAATACATTTCAAACATTATGTATTAAAATAATATAAAAATAATAAAATTA-GAAAATAGA-AT
64 TTAATACATTTCAAACATTATGTACTAAAATAATAT-AAAATAATAAAA-TACGAAAATA-ATAT
* *** *
32254353 ATTTTTTTTAAAGTAATAAAAT-CG--GGGAA-AAAAATACGAACAAAGGGCCGAAATAAGGG-T
126 A-TTTTTTCAAAGTAATAAAATCCGAAAATAAGAAAAATACGAACAAAGGGCCAAAATAAGGGTT
32254413 TTTTACTAAATTT
190 TTTTACTAAATTT
32254426 GTTTTGAAGT
Statistics
Matches: 620, Mismatches: 39, Indels: 28
0.90 0.06 0.04
Matches are distributed among these distances:
467 35 0.06
468 61 0.10
469 149 0.24
470 49 0.08
471 237 0.38
472 44 0.07
473 24 0.04
474 21 0.03
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.30
Consensus pattern (466 bp):
AAAAATACGAACAAAGGGCCAAAATAAGGTTTTTTTACTAAATTTATATAAAACAACACTAAATT
AATACATTTCAAACATTATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATATATTTT
TTCAAAGTAATAAAATCCGAAAATAAGAAAAATACGAACAAAGGGCCAAAATAAGGGTTTTTTAC
TAAATTTATATAAAAAACACACTAAATTAATACATTTCAAACATTATGTACTAAAATAATATAAA
ATAAGAAAAAAATAGTATTTTTTGAAAATAATAAAATCCAAAAATAAGAAAAATACGAACAAAGG
GCCAAAATAAGGTTTTTTTACTAAATTTATATAAAAAACACACTAAATTAATACATTTCAAACTT
TATGTACTAAAATAATATAAAATAATAAAATACAAAAAGAGTATATTTTTTGAAAGTAATAAAAT
CTGAAAATAAG
Found at i:32255401 original size:129 final size:129
Alignment explanation
Indices: 32255171--32255422 Score: 459
Period size: 129 Copynumber: 2.0 Consensus size: 129
32255161 CTGGGGCTCC
* *
32255171 GCAGTTTTGGCAGTGTTGTATCGGGAGCTTTGTCGGACGACAAAGCCTGCTGTCGTAGACATGGG
1 GCAGTTCTAGCAGTGTTGTATCGGGAGCTTTGTCGGACGACAAAGCCTGCTGTCGTAGACATGGG
32255236 CGGATGCCTTACATTGTTGCAATCCTGGGCACTTTATCGGATGCCATTCTTGGCATCAATTCTG
66 CGGATGCCTTACATTGTTGCAATCCTGGGCACTTTATCGGATGCCATTCTTGGCATCAATTCTG
*
32255300 GCAGTTCTAGCAGTGTTGTCTCGGGAGCTTTGTCGGACGACAAAGCCTGCTGTCGTAGACATGGG
1 GCAGTTCTAGCAGTGTTGTATCGGGAGCTTTGTCGGACGACAAAGCCTGCTGTCGTAGACATGGG
**
32255365 CGGATGCCTTACATTGTTGCAATCCTGGGCACTTTATTTGATGCCATTCTTGGCATCA
66 CGGATGCCTTACATTGTTGCAATCCTGGGCACTTTATCGGATGCCATTCTTGGCATCA
32255423 GTTAGTCACC
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
129 118 1.00
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (129 bp):
GCAGTTCTAGCAGTGTTGTATCGGGAGCTTTGTCGGACGACAAAGCCTGCTGTCGTAGACATGGG
CGGATGCCTTACATTGTTGCAATCCTGGGCACTTTATCGGATGCCATTCTTGGCATCAATTCTG
Found at i:32263032 original size:15 final size:15
Alignment explanation
Indices: 32263012--32263043 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32263002 AAGATAACGA
32263012 AATGTCGTATCCAGT
1 AATGTCGTATCCAGT
*
32263027 AATGTCGTATCTAGT
1 AATGTCGTATCCAGT
32263042 AA
1 AA
32263044 GTTTGGATCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (15 bp):
AATGTCGTATCCAGT
Found at i:32263892 original size:14 final size:15
Alignment explanation
Indices: 32263875--32263912 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
32263865 TATACATATG
32263875 TATATAAAA-AGTGT
1 TATATAAAATAGTGT
32263889 TATATTAAAATAGTGT
1 TATA-TAAAATAGTGT
32263905 TATATAAA
1 TATATAAA
32263913 GGTATTATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.18
15 9 0.41
16 9 0.41
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (15 bp):
TATATAAAATAGTGT
Found at i:32263905 original size:16 final size:15
Alignment explanation
Indices: 32263875--32263909 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
32263865 TATACATATG
32263875 TATA-TAAAAAGTGT
1 TATATTAAAAAGTGT
32263889 TATATTAAAATAGTGT
1 TATATTAAAA-AGTGT
32263905 TATAT
1 TATAT
32263910 AAAGGTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.21
15 5 0.26
16 10 0.53
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (15 bp):
TATATTAAAAAGTGT
Found at i:32271669 original size:81 final size:81
Alignment explanation
Indices: 32271534--32271696 Score: 281
Period size: 81 Copynumber: 2.0 Consensus size: 81
32271524 GTTTTTATAC
* * *
32271534 TTAAAAATAACACTAACATAGTTACAATTTATCAAGCAAATGCCTCTAAAATAGTATGAAAATTA
1 TTAAAAATAACACTAACATAGCTACAACTTATCAAGCAAATGCCTCTAAAATAGTAAGAAAATTA
32271599 ACAATAAAACGAGTTA
66 ACAATAAAACGAGTTA
*
32271615 TTAAAAATAACACTAACATAGCTACAACTTATCAAGTAAATGCCTCTAAAATAGTAAGAAAATTA
1 TTAAAAATAACACTAACATAGCTACAACTTATCAAGCAAATGCCTCTAAAATAGTAAGAAAATTA
*
32271680 ACAATAAAATGAGTTA
66 ACAATAAAACGAGTTA
32271696 T
1 T
32271697 ATAATATCTA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.51, C:0.13, G:0.09, T:0.27
Consensus pattern (81 bp):
TTAAAAATAACACTAACATAGCTACAACTTATCAAGCAAATGCCTCTAAAATAGTAAGAAAATTA
ACAATAAAACGAGTTA
Found at i:32273525 original size:4 final size:4
Alignment explanation
Indices: 32273516--32273541 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
32273506 GAGACCATTA
32273516 CCTT CCTT CCTT CCTT CCTT CCTT CC
1 CCTT CCTT CCTT CCTT CCTT CCTT CC
32273542 CATCAAAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (4 bp):
CCTT
Found at i:32275562 original size:14 final size:14
Alignment explanation
Indices: 32275543--32275572 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
32275533 GGAAACTACC
32275543 TATCTCAATTTTTT
1 TATCTCAATTTTTT
32275557 TATCTCAATTTTTT
1 TATCTCAATTTTTT
32275571 TA
1 TA
32275573 GAGTGAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.63
Consensus pattern (14 bp):
TATCTCAATTTTTT
Found at i:32286894 original size:43 final size:43
Alignment explanation
Indices: 32286850--32287008 Score: 237
Period size: 43 Copynumber: 3.7 Consensus size: 43
32286840 AAGATTGCGG
* *
32286850 ATCTTATCTTCCCTAGGAGTAGGGAAGCAGATCTAAGCGGCGG
1 ATCTTATCTTCCCCAGGAGTAGGGAAGCAGATCTAAGCGGCGA
*
32286893 ATCTTATCTTCCCCAGGAGTAGGGAAGCAGATCTAAGCAGCGA
1 ATCTTATCTTCCCCAGGAGTAGGGAAGCAGATCTAAGCGGCGA
* * * *
32286936 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCGAGGATGGCGA
1 ATCTTATCTTCCCCAGGAGTAGGGAAGCAGATCTAAG-CGGCGA
*
32286980 ATCTTATCTTCCCTAGGAGTAGGGAAGCA
1 ATCTTATCTTCCCCAGGAGTAGGGAAGCA
32287009 AATTTAAAAA
Statistics
Matches: 105, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
43 74 0.70
44 31 0.30
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (43 bp):
ATCTTATCTTCCCCAGGAGTAGGGAAGCAGATCTAAGCGGCGA
Found at i:32287031 original size:87 final size:86
Alignment explanation
Indices: 32286854--32287031 Score: 212
Period size: 87 Copynumber: 2.1 Consensus size: 86
32286844 TTGCGGATCT
* * * *
32286854 TATCTTCCCTAGGAGTAGGGAAGCAGATCTAAGCGGCGGATCTTATCTTCCCCAGGAGTAGGGAA
1 TATCTTCCCCAGGAGTAGGGAAACAGATCGAAGCGGCGAATCTTATCTTCCCCAGGAGTAGGGAA
* ** * *
32286919 GCAGATCTAAGCAGCGAATCT
66 GCAAATCTAAAAAACGAATCC
* * *
32286940 TATCTTCCCCAGGAGTAGGGAAACAGATCGAGGATGGCGAATCTTATCTTCCCTAGGAGTAGGGA
1 TATCTTCCCCAGGAGTAGGGAAACAGATCGAAG-CGGCGAATCTTATCTTCCCCAGGAGTAGGGA
* * *
32287005 AGCAAATTTAAAAAACTAGTCC
65 AGCAAATCTAAAAAACGAATCC
32287027 TATCT
1 TATCT
32287032 CCCTGGTCAG
Statistics
Matches: 76, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
86 29 0.38
87 47 0.62
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (86 bp):
TATCTTCCCCAGGAGTAGGGAAACAGATCGAAGCGGCGAATCTTATCTTCCCCAGGAGTAGGGAA
GCAAATCTAAAAAACGAATCC
Found at i:32287184 original size:130 final size:131
Alignment explanation
Indices: 32286936--32287251 Score: 490
Period size: 130 Copynumber: 2.4 Consensus size: 131
32286926 TAAGCAGCGA
* *
32286936 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCGAGGATGGCGAATCTTATCTTCCCTAGGAGTA
1 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCGAAGACGGCGAATCTTATCTTCCCTAGGAGTA
* * *
32287001 GGGAAGCAAATTTAAAAAACTAGTCCTATCTCCCTGGTCAGCAATGGGATAGGTTGAAGATTACG
66 GGGAAACAAATTTAAAAAACTAGGCCTATCTCCCTGGTCAACAATGGGATAGGTTGAAGATTACG
32287066 G
131 G
* *
32287067 ATCTTATCTTCCCCAGGAGTAGGGAAATAGATCGAAGACGGTGAATCTTATCTTCCC-AGGAGTA
1 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCGAAGACGGCGAATCTTATCTTCCCTAGGAGTA
* *** * *
32287131 GGGAAACAGATTTAAGTCACTAGGCCTATCTCCCTGGTCAACAGTGGGATAGGTTGAATATTACG
66 GGGAAACAAATTTAAAAAACTAGGCCTATCTCCCTGGTCAACAATGGGATAGGTTGAAGATTACG
32287196 G
131 G
* *
32287197 ATCTTATCTTCCCTAGGAGTAGGGAAACAGATCGAAGACCGCGAATCTTATCTTC
1 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCGAAGACGGCGAATCTTATCTTC
32287252 AAGCGTAAGG
Statistics
Matches: 168, Mismatches: 17, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
130 115 0.68
131 53 0.32
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (131 bp):
ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCGAAGACGGCGAATCTTATCTTCCCTAGGAGTA
GGGAAACAAATTTAAAAAACTAGGCCTATCTCCCTGGTCAACAATGGGATAGGTTGAAGATTACG
G
Found at i:32287419 original size:129 final size:129
Alignment explanation
Indices: 32287276--32287531 Score: 370
Period size: 129 Copynumber: 2.0 Consensus size: 129
32287266 AGATTTAAGC
* *
32287276 AGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGA-AAATTGAATTCGATAATCCTATCTTCCTGA
1 AGCAAATCTTATCTCCCTGAGGTTGCAGTGGA-ACAAATTGAAGTCGATAATCCTATCTCCCTGA
** * * * ** *
32287340 AGTTGTAGTGGAGCGGGTTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCAT
65 AGTTACAGTGGAGCGGATTAAAGTAACAGATATTATCTCTCTGAAGTAACAGTAGAGTAGATCAT
* * *
32287405 AGCAAATCTTATCTCCCTGAGGTTGCAGTGGAACAGATTGGAGTCGATAATCTTATCTCCCTGAA
1 AGCAAATCTTATCTCCCTGAGGTTGCAGTGGAACAAATTGAAGTCGATAATCCTATCTCCCTGAA
*
32287470 GTTACAGTGGAGCGGATTAAAGTAACATATATTATCTCTCTGAAGTAACAGTAGAGTAGATC
66 GTTACAGTGGAGCGGATTAAAGTAACAGATATTATCTCTCTGAAGTAACAGTAGAGTAGATC
32287532 GCATCAGGCC
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
128 1 0.01
129 111 0.99
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (129 bp):
AGCAAATCTTATCTCCCTGAGGTTGCAGTGGAACAAATTGAAGTCGATAATCCTATCTCCCTGAA
GTTACAGTGGAGCGGATTAAAGTAACAGATATTATCTCTCTGAAGTAACAGTAGAGTAGATCAT
Found at i:32287460 original size:44 final size:44
Alignment explanation
Indices: 32287280--32287492 Score: 157
Period size: 44 Copynumber: 4.9 Consensus size: 44
32287270 TTAAGCAGCA
* * * *
32287280 AATCTTATCTCCCTGAGGTTGCAGTGGAGA-AAATTGAATTCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGA-ACAGATTAAAGTCGAT
* * * * * * *
32287324 AATCCTATCTTCCTGAAGTTGTAGTGGAGCGGGTTAAAGT-AAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGTCGAT
* * *** * *
32287367 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCATAG-C-A-
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGTCGAT
* **
32287409 AATCTTATCTCCCTGAGGTTGCAGTGGAACAGATTGGAGTCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGTCGAT
* * *
32287453 AATCTTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGT
32287493 AACATATATT
Statistics
Matches: 128, Mismatches: 35, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
41 29 0.23
42 2 0.02
43 5 0.04
44 92 0.72
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGTCGAT
Found at i:32287545 original size:129 final size:128
Alignment explanation
Indices: 32287275--32287566 Score: 359
Period size: 129 Copynumber: 2.3 Consensus size: 128
32287265 CAGATTTAAG
* * *
32287275 CAGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGAAAATTGAATTCGATAATCCTATCTTCCTGA
1 CAGCAAACCTTATCTCCCTGAGGTTGCAGTGGA-AAAATTGAAGTCGATAATCCTATCTCCCTGA
** * * * ** *
32287340 AGTTGTAGTGGAGCGGGTTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCA
65 AGTTACAGTGGAGCGGATTAAAGTAACAGATATTATCTCTCTGAAGTAACAGTAGAGTAGATCA
* * * * *
32287404 TAGCAAATCTTATCTCCCTGAGGTTGCAGTGGAACAGATTGGAGTCGATAATCTTATCTCCCTGA
1 CAGCAAACCTTATCTCCCTGAGGTTGCAGTGGAA-AAATTGAAGTCGATAATCCTATCTCCCTGA
* *
32287469 AGTTACAGTGGAGCGGATTAAAGTAACATATATTATCTCTCTGAAGTAACAGTAGAGTAGATCG
65 AGTTACAGTGGAGCGGATTAAAGTAACAGATATTATCTCTCTGAAGTAACAGTAGAGTAGATCA
* ** * *
32287533 CATCAGGCCTTATCTCCCTGAGATTACAGTGGAA
1 CAGCAAACCTTATCTCCCTGAGGTTGCAGTGGAA
32287567 TACACTGAAG
Statistics
Matches: 139, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
128 1 0.01
129 138 0.99
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (128 bp):
CAGCAAACCTTATCTCCCTGAGGTTGCAGTGGAAAAATTGAAGTCGATAATCCTATCTCCCTGAA
GTTACAGTGGAGCGGATTAAAGTAACAGATATTATCTCTCTGAAGTAACAGTAGAGTAGATCA
Found at i:32291735 original size:14 final size:14
Alignment explanation
Indices: 32291713--32291742 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32291703 AAATAATAAT
*
32291713 TTTAGCTTTTTAAA
1 TTTACCTTTTTAAA
32291727 TTTACCTTTTTAAA
1 TTTACCTTTTTAAA
32291741 TT
1 TT
32291743 ATTTTGTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.10, G:0.03, T:0.60
Consensus pattern (14 bp):
TTTACCTTTTTAAA
Found at i:32292608 original size:96 final size:97
Alignment explanation
Indices: 32292498--32292692 Score: 383
Period size: 96 Copynumber: 2.0 Consensus size: 97
32292488 TGTGTAATCA
32292498 AAATCTATATATTGTATATTTCCCACTCTTTGTTTTTGATATTAAATAAAGTTATAACTAAAATA
1 AAATCTATATATTGTATATTTCCCACTCTTTGTTTTTGATATTAAATAAAGTTATAACTAAAATA
32292563 TTATTTTAAAAAAAAGTTGA-TATTGCGTTTT
66 TTATTTTAAAAAAAAGTTGATTATTGCGTTTT
32292594 AAATCTATATATTGTATATTTCCCACTCTTTGTTTTTGATATTAAATAAAGTTATAACTAAAATA
1 AAATCTATATATTGTATATTTCCCACTCTTTGTTTTTGATATTAAATAAAGTTATAACTAAAATA
32292659 TTATTTTAAAAAAAAGTTGATTATTGCGTTTT
66 TTATTTTAAAAAAAAGTTGATTATTGCGTTTT
32292691 AA
1 AA
32292693 TTTTTTTTTA
Statistics
Matches: 98, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
96 85 0.87
97 13 0.13
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (97 bp):
AAATCTATATATTGTATATTTCCCACTCTTTGTTTTTGATATTAAATAAAGTTATAACTAAAATA
TTATTTTAAAAAAAAGTTGATTATTGCGTTTT
Found at i:32294145 original size:16 final size:17
Alignment explanation
Indices: 32294124--32294157 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
32294114 ACCTAAATTT
32294124 TTAGTAAA-AGATAAAA
1 TTAGTAAAGAGATAAAA
32294140 TTAGTAAAGAGATAAAA
1 TTAGTAAAGAGATAAAA
32294157 T
1 T
32294158 ACAATTTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (17 bp):
TTAGTAAAGAGATAAAA
Found at i:32300134 original size:11 final size:11
Alignment explanation
Indices: 32300118--32300154 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
32300108 ATTAATCCTT
32300118 TCTCAATTTCC
1 TCTCAATTTCC
32300129 TCTCAATTTCC
1 TCTCAATTTCC
*
32300140 TCTTGAATTTCC
1 TC-TCAATTTCC
32300152 TCT
1 TCT
32300155 TAAATCCCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.16, C:0.32, G:0.03, T:0.49
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:32300150 original size:12 final size:12
Alignment explanation
Indices: 32300120--32300155 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
32300110 TAATCCTTTC
32300120 TCAATTTCCTC-
1 TCAATTTCCTCT
32300131 TCAATTTCCTCT
1 TCAATTTCCTCT
*
32300143 TGAATTTCCTCT
1 TCAATTTCCTCT
32300155 T
1 T
32300156 AAATCCCTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 11 0.48
12 12 0.52
ACGTcount: A:0.17, C:0.31, G:0.03, T:0.50
Consensus pattern (12 bp):
TCAATTTCCTCT
Found at i:32302051 original size:18 final size:18
Alignment explanation
Indices: 32302010--32302044 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32302000 GCCAGGTGCG
* *
32302010 TATCCTAGCCCTTTTATT
1 TATCCTAACCCTTATATT
32302028 TATCCTAACCCTTATAT
1 TATCCTAACCCTTATAT
32302045 GTTTCCTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.29, G:0.03, T:0.46
Consensus pattern (18 bp):
TATCCTAACCCTTATATT
Found at i:32302337 original size:21 final size:21
Alignment explanation
Indices: 32302290--32302347 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
32302280 CCTAACACCG
*
32302290 ACAACCAG-ATCCCCTACCGGA
1 ACAACCAGAATCCCC-GCCGGA
**
32302311 TGAACCAGAATCCCCGCCGGA
1 ACAACCAGAATCCCCGCCGGA
* *
32302332 ACAACCACAACCCCCG
1 ACAACCAGAATCCCCG
32302348 TCGAAAACTG
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
21 23 0.79
22 6 0.21
ACGTcount: A:0.33, C:0.45, G:0.16, T:0.07
Consensus pattern (21 bp):
ACAACCAGAATCCCCGCCGGA
Found at i:32306382 original size:125 final size:125
Alignment explanation
Indices: 32306233--32306640 Score: 712
Period size: 125 Copynumber: 3.3 Consensus size: 125
32306223 ACATGCTATA
* * **
32306233 GTAGCAAAAGCACGTCCACGTGGGAGCGATTTCAAAAATTCTTCTAATAAAATATCCTGCTTGAA
1 GTAGCAAAAGCACGTCCACGTGGGAGCGATTTCAGAAATTCTTCTTATAAAGCATCCTGCTTGAA
32306298 GCGTTTTTTATACTATTTGCTCAGAAACGTTAACTCGAAATTATTTTTTCAGGACCTACT
66 GCGTTTTTTATACTATTTGCTCAGAAACGTTAACTCGAAATTATTTTTTCAGGACCTACT
*
32306358 GTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTTATAAAGCATCCTGCTTGAA
1 GTAGCAAAAGCACGTCCACGTGGGAGCGATTTCAGAAATTCTTCTTATAAAGCATCCTGCTTGAA
32306423 GCGTTTTTTATACTATTTGCTCAGAAACGTTAACTCGAAATTATTTTTTCAGGACCTACT
66 GCGTTTTTTATACTATTTGCTCAGAAACGTTAACTCGAAATTATTTTTTCAGGACCTACT
*
32306483 GTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTTATAAAGCATCCTGCTTGAA
1 GTAGCAAAAGCACGTCCACGTGGGAGCGATTTCAGAAATTCTTCTTATAAAGCATCCTGCTTGAA
*
32306548 GCGTTTTTTATACTATTTGCTCAGAAACGTCAACTC-AGAATTATTTTTTCAGGACCTACT
66 GCGTTTTTTATACTATTTGCTCAGAAACGTTAACTCGA-AATTATTTTTTCAGGACCTACT
*
32306608 GTATG-AAAAACACGTCCACGTGGGAGCGATTTC
1 GTA-GCAAAAGCACGTCCACGTGGGAGCGATTTC
32306641 CTTAATAAAT
Statistics
Matches: 273, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
124 1 0.00
125 271 0.99
126 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (125 bp):
GTAGCAAAAGCACGTCCACGTGGGAGCGATTTCAGAAATTCTTCTTATAAAGCATCCTGCTTGAA
GCGTTTTTTATACTATTTGCTCAGAAACGTTAACTCGAAATTATTTTTTCAGGACCTACT
Found at i:32306846 original size:6 final size:6
Alignment explanation
Indices: 32306835--32306860 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
32306825 AAAAACTCTA
32306835 AACCCT AACCCT AACCCT AACCCT AA
1 AACCCT AACCCT AACCCT AACCCT AA
32306861 AAACCCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (6 bp):
AACCCT
Found at i:32307361 original size:20 final size:21
Alignment explanation
Indices: 32307317--32307361 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
32307307 TTTAATTTTA
* *
32307317 AATTTTTATAGTTTTTCAAAT
1 AATTTTTATAATTATTCAAAT
32307338 -ATTTTTATAATTATT-AAAT
1 AATTTTTATAATTATTCAAAT
32307357 AATTT
1 AATTT
32307362 ATAAGTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
AATTTTTATAATTATTCAAAT
Found at i:32312380 original size:18 final size:20
Alignment explanation
Indices: 32312341--32312377 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
32312331 TTCAACCGTT
*
32312341 TTTATAAAAATTATTAAAAG
1 TTTATAAAAATTAATAAAAG
32312361 TTTA-AAAAATTAATAAA
1 TTTATAAAAATTAATAAA
32312378 GTTGGCCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
TTTATAAAAATTAATAAAAG
Found at i:32321710 original size:189 final size:190
Alignment explanation
Indices: 32321390--32321768 Score: 751
Period size: 189 Copynumber: 2.0 Consensus size: 190
32321380 GTGGACTGTT
32321390 TCATTTTTTTCTTGAAAAGAGCTAAAAACATATAAATTTGTCCTTGAGTTAGGTGTCGAAACCTG
1 TCATTTTTTTCTTGAAAAGAGCTAAAAACATATAAATTTGTCCTTGAGTTAGGTGTCGAAACCTG
32321455 AAGTCCTACACAATATTTAGGAGATTTGAAAATTTTATTTAAAAAAATTGGTTTAAAAAGTTTAA
66 AAGTCCTACACAATATTTAGGAGATTTGAAAATTTTATTTAAAAAAATTGGTTTAAAAAGTTTAA
32321520 GTTCGTTTAAATATGGGTTGAGTTTAAGTTTCACCTAGTTCATTTTC-AATTTATAATAC
131 GTTCGTTTAAATATGGGTTGAGTTTAAGTTTCACCTAGTTCATTTTCAAATTTATAATAC
32321579 TCATTTTTTTCTTGAAAAGAGCTAAAAACATATAAATTTGTCCTTGAGTTAGGTGTCGAAACCTG
1 TCATTTTTTTCTTGAAAAGAGCTAAAAACATATAAATTTGTCCTTGAGTTAGGTGTCGAAACCTG
32321644 AAGTCCTACACAATATTTAGGAGATTTGAAAATTTTATTTAAAAAAATTGGTTTAAAAAGTTTAA
66 AAGTCCTACACAATATTTAGGAGATTTGAAAATTTTATTTAAAAAAATTGGTTTAAAAAGTTTAA
32321709 GTTCGTTTAAATATGGGTTGAGTTTAAGTTTCACCTAGTTCATTTTCAAATTTATAATAC
131 GTTCGTTTAAATATGGGTTGAGTTTAAGTTTCACCTAGTTCATTTTCAAATTTATAATAC
32321769 ACTATTTTAT
Statistics
Matches: 189, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
189 177 0.94
190 12 0.06
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (190 bp):
TCATTTTTTTCTTGAAAAGAGCTAAAAACATATAAATTTGTCCTTGAGTTAGGTGTCGAAACCTG
AAGTCCTACACAATATTTAGGAGATTTGAAAATTTTATTTAAAAAAATTGGTTTAAAAAGTTTAA
GTTCGTTTAAATATGGGTTGAGTTTAAGTTTCACCTAGTTCATTTTCAAATTTATAATAC
Found at i:32327228 original size:96 final size:93
Alignment explanation
Indices: 32326926--32327230 Score: 384
Period size: 90 Copynumber: 3.2 Consensus size: 93
32326916 AACAACTAGT
* * * *
32326926 TTTATTTGA-TTTTTCCTTAAAAACCTTAAATACTAAACCCCAATCTAATTTTTTTTAAATTTAT
1 TTTATTTAATTTTTTCCTTAAAAACCATAAACACT-AACCCTAATCT-A--TTTTTTAAATTTAT
32326990 AATTAATTTACTCAAGTAACCCTAAACCCTAA
62 AATTAATTTACTCAAGTAACCCTAAACCCTAA
* * **
32327022 TTTATTTAATTTTTTCCTTAAAAACCCTAAACCCTAA-TTTAAT-T-TTTTTTAAATTTATAATT
1 TTTATTTAATTTTTTCCTTAAAAACCATAAACACTAACCCTAATCTATTTTTTAAATTTATAATT
32327084 AATTTACTCAAGTAACCCTAAACCCTAA
66 AATTTACTCAAGTAACCCTAAACCCTAA
*
32327112 TTTATTTAATTTTTTCCTTAAAAACCATAAACACTGAACCCTGATCTATTTTTTAAAAATTTATA
1 TTTATTTAATTTTTTCCTTAAAAACCATAAACACT-AACCCTAATCTATTTTTT--AAATTTATA
* * ** *
32327177 ATTAATTTAATTAAAAAACCCTAAACCCTTA
63 ATTAATTTACTCAAGTAACCCTAAACCCTAA
*
32327208 TTTATTTAATTTTTTTCTTAAAA
1 TTTATTTAATTTTTTCCTTAAAA
32327231 CCCTAAAATC
Statistics
Matches: 184, Mismatches: 18, Indels: 14
0.85 0.08 0.06
Matches are distributed among these distances:
90 79 0.43
91 2 0.01
92 3 0.02
93 1 0.01
94 7 0.04
95 3 0.02
96 67 0.36
97 22 0.12
ACGTcount: A:0.38, C:0.17, G:0.02, T:0.44
Consensus pattern (93 bp):
TTTATTTAATTTTTTCCTTAAAAACCATAAACACTAACCCTAATCTATTTTTTAAATTTATAATT
AATTTACTCAAGTAACCCTAAACCCTAA
Found at i:32327525 original size:29 final size:31
Alignment explanation
Indices: 32327472--32327534 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 31
32327462 CCCTGAAAAA
32327472 TGATGTTAAAAATAAAAATAGAATGGGAACT
1 TGATGTTAAAAATAAAAATAGAATGGGAACT
* * *
32327503 TGAT-TTAACAATAAAAA-AGAATGTGAAGT
1 TGATGTTAAAAATAAAAATAGAATGGGAACT
32327532 TGA
1 TGA
32327535 ATTTTGGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 13 0.45
30 12 0.41
31 4 0.14
ACGTcount: A:0.51, C:0.03, G:0.19, T:0.27
Consensus pattern (31 bp):
TGATGTTAAAAATAAAAATAGAATGGGAACT
Found at i:32337443 original size:16 final size:16
Alignment explanation
Indices: 32337418--32337463 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
32337408 AAACAATTGA
32337418 ATTACTATTACAGCTCT
1 ATTA-TATTACAGCTCT
*
32337435 ATTCA-ATTACAGTTCT
1 ATT-ATATTACAGCTCT
32337451 ATTATATTACAGC
1 ATTATATTACAGC
32337464 GAACCAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 1 0.04
16 20 0.80
17 3 0.12
18 1 0.04
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.41
Consensus pattern (16 bp):
ATTATATTACAGCTCT
Found at i:32341119 original size:24 final size:23
Alignment explanation
Indices: 32341087--32341135 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 23
32341077 TTAAGTACGG
*
32341087 TTAGGTTTAGGGTTTTGTAGATT
1 TTAGGTTTAGGGTTGTGTAGATT
*
32341110 TTAGGATTTAGGGTTGTGTAGGTT
1 TTAGG-TTTAGGGTTGTGTAGATT
32341134 TT
1 TT
32341136 TTTATATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (23 bp):
TTAGGTTTAGGGTTGTGTAGATT
Found at i:32341145 original size:10 final size:10
Alignment explanation
Indices: 32341132--32341190 Score: 50
Period size: 10 Copynumber: 5.7 Consensus size: 10
32341122 GTTGTGTAGG
32341132 TTTTTTTATA
1 TTTTTTTATA
32341142 TTTTTTTA-A
1 TTTTTTTATA
32341151 GTTTTTTTAATA
1 -TTTTTTT-ATA
* *
32341163 TATTCTTTA-G
1 T-TTTTTTATA
32341173 TTTTTTTATA
1 TTTTTTTATA
32341183 TTTCTTTT
1 TTT-TTTT
32341191 TTTATGTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
9 7 0.18
10 19 0.49
11 7 0.18
12 6 0.15
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (10 bp):
TTTTTTTATA
Found at i:32341158 original size:21 final size:19
Alignment explanation
Indices: 32341131--32341190 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 19
32341121 GGTTGTGTAG
32341131 GTTTTTTTATATTTTTTTAA
1 GTTTTTTTATATTTTTTT-A
*
32341151 GTTTTTTTAATATATTCTTTA
1 GTTTTTTT-ATAT-TTTTTTA
32341172 GTTTTTTTATATTTCTTTT
1 GTTTTTTTATATTT-TTTT
32341191 TTTATGTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 2 0.06
20 15 0.43
21 13 0.37
22 5 0.14
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.73
Consensus pattern (19 bp):
GTTTTTTTATATTTTTTTA
Found at i:32341164 original size:23 final size:24
Alignment explanation
Indices: 32341138--32341194 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 24
32341128 TAGGTTTTTT
32341138 TATATTTTTTTAAGTTTTTTTA-A
1 TATATTTTTTTAAGTTTTTTTATA
*
32341161 TATA-TTCTTT-AGTTTTTTTATA
1 TATATTTTTTTAAGTTTTTTTATA
* *
32341183 TTTCTTTTTTTA
1 TATATTTTTTTA
32341195 TGTAAAGTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
21 10 0.37
22 8 0.30
23 9 0.33
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.72
Consensus pattern (24 bp):
TATATTTTTTTAAGTTTTTTTATA
Found at i:32349309 original size:9 final size:9
Alignment explanation
Indices: 32349292--32349331 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
32349282 ATAGAGATTC
*
32349292 AATTTGGTT
1 AATTCGGTT
32349301 AATTCGGTT
1 AATTCGGTT
*
32349310 AATTCGGGT
1 AATTCGGTT
32349319 AATTCGGTT
1 AATTCGGTT
32349328 AATT
1 AATT
32349332 TTTAACCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.25, C:0.07, G:0.23, T:0.45
Consensus pattern (9 bp):
AATTCGGTT
Found at i:32357823 original size:3 final size:3
Alignment explanation
Indices: 32357801--32357879 Score: 70
Period size: 3 Copynumber: 26.0 Consensus size: 3
32357791 GAAGTTGAGG
* *
32357801 AGA AGG AGA ACGA GGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA A-GA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
* * * * *
32357847 TGA GGA AG- AGA AGA GGGA GGA GGA AGA AGA AGA
1 AGA AGA AGA AGA AGA -AGA AGA AGA AGA AGA AGA
32357880 GAGTGAAGAT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
2 2 0.03
3 58 0.91
4 4 0.06
ACGTcount: A:0.56, C:0.01, G:0.42, T:0.01
Consensus pattern (3 bp):
AGA
Found at i:32363553 original size:23 final size:22
Alignment explanation
Indices: 32363507--32363553 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
32363497 AAAGTTCTAA
* *
32363507 TTATTTTATATATTTTGTAAAT
1 TTATATTATATATTTTATAAAT
*
32363529 TTATATTATAATATTTTATATAT
1 TTATATTAT-ATATTTTATAAAT
32363552 TT
1 TT
32363554 TTCAAAGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (22 bp):
TTATATTATATATTTTATAAAT
Found at i:32372960 original size:18 final size:18
Alignment explanation
Indices: 32372926--32372960 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32372916 ATATATCCGT
* *
32372926 ATTTAATTAATTTTTAAA
1 ATTTAATTAAATGTTAAA
32372944 ATTTAATTAAATGTTAA
1 ATTTAATTAAATGTTAA
32372961 CATGTCATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
ATTTAATTAAATGTTAAA
Found at i:32373343 original size:10 final size:11
Alignment explanation
Indices: 32373323--32373348 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
32373313 TTCTTTTAAC
32373323 TTTCTTTTTTT
1 TTTCTTTTTTT
32373334 TTTCTTTTTTT
1 TTTCTTTTTTT
32373345 TTTC
1 TTTC
32373349 CATTCTCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:32380252 original size:25 final size:25
Alignment explanation
Indices: 32380222--32380294 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
32380212 AAAAATTATA
32380222 ATTTTAAATATAAAATAAATTCGGT
1 ATTTTAAATATAAAATAAATTCGGT
* *
32380247 ATTTTATACA-AAAATAAA------
1 ATTTTAAATATAAAATAAATTCGGT
32380265 ATTTTAAATATAAAATAAATTCGGT
1 ATTTTAAATATAAAATAAATTCGGT
32380290 ATTTT
1 ATTTT
32380295 TTATTTCACA
Statistics
Matches: 37, Mismatches: 4, Indels: 14
0.67 0.07 0.25
Matches are distributed among these distances:
18 8 0.22
19 8 0.22
24 8 0.22
25 13 0.35
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.41
Consensus pattern (25 bp):
ATTTTAAATATAAAATAAATTCGGT
Found at i:32380275 original size:43 final size:44
Alignment explanation
Indices: 32380207--32380294 Score: 160
Period size: 43 Copynumber: 2.0 Consensus size: 44
32380197 CATAAATTAA
*
32380207 TATACAAAAATTATAATTTTAAATATAAAATAAATTCGGTATTT
1 TATACAAAAATTAAAATTTTAAATATAAAATAAATTCGGTATTT
32380251 TATACAAAAA-TAAAATTTTAAATATAAAATAAATTCGGTATTT
1 TATACAAAAATTAAAATTTTAAATATAAAATAAATTCGGTATTT
32380294 T
1 T
32380295 TTATTTCACA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 33 0.77
44 10 0.23
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.40
Consensus pattern (44 bp):
TATACAAAAATTAAAATTTTAAATATAAAATAAATTCGGTATTT
Found at i:32381367 original size:16 final size:17
Alignment explanation
Indices: 32381345--32381388 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
32381335 AAATAACTCA
32381345 AAAAAATAAT-T-AATT
1 AAAAAATAATCTAAATT
*
32381360 ACAAAAATGATCTAAATT
1 A-AAAAATAATCTAAATT
32381378 AAAAAATAATC
1 AAAAAATAATC
32381389 ATCCAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 1 0.04
16 8 0.33
17 10 0.42
18 5 0.21
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (17 bp):
AAAAAATAATCTAAATT
Found at i:32381829 original size:55 final size:55
Alignment explanation
Indices: 32381769--32381894 Score: 146
Period size: 55 Copynumber: 2.3 Consensus size: 55
32381759 TTTCATGTGT
* ** * **
32381769 TGGGACACTGATGGCTAGCATTCTTGTACCAGATTTGAGGAAAAAAATTTG-GTGC
1 TGGGACACTGATGGCCAGCACCCTTATACCAGATTT-AAAAAAAAAATTTGAGTGC
* * *
32381824 TGGGACACCGGTGGCCAGCACCCTTATACCAGATTTAAAAAAAAAATTTGAGTGT
1 TGGGACACTGATGGCCAGCACCCTTATACCAGATTTAAAAAAAAAATTTGAGTGC
*
32381879 TGGGACATTGATGGCC
1 TGGGACACTGATGGCC
32381895 GGTACCCACT
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
54 12 0.21
55 46 0.79
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (55 bp):
TGGGACACTGATGGCCAGCACCCTTATACCAGATTTAAAAAAAAAATTTGAGTGC
Found at i:32382481 original size:21 final size:21
Alignment explanation
Indices: 32382456--32382515 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
32382446 TGTTGGTCGG
32382456 ATTTTATATTTTCGTATATAA
1 ATTTTATATTTTCGTATATAA
**
32382477 ATTTTATATTTTAATATATAA
1 ATTTTATATTTTCGTATATAA
*
32382498 ATTATAAATATTTTCGTA
1 ATT-T-TATATTTTCGTA
32382516 AATTAGTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 22 0.69
22 1 0.03
23 9 0.28
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.55
Consensus pattern (21 bp):
ATTTTATATTTTCGTATATAA
Found at i:32387728 original size:30 final size:30
Alignment explanation
Indices: 32387692--32387748 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
32387682 ACACACGCCC
32387692 GTATACATCAAAACTACTCCATTACATTTT
1 GTATACATCAAAACTACTCCATTACATTTT
32387722 GTATACATCAAAACTACTCCATTACAT
1 GTATACATCAAAACTACTCCATTACAT
32387749 ACAATGACTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.25, G:0.04, T:0.33
Consensus pattern (30 bp):
GTATACATCAAAACTACTCCATTACATTTT
Found at i:32389171 original size:19 final size:19
Alignment explanation
Indices: 32389131--32389181 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
32389121 TATATAAACG
32389131 TAAAAAATTATTAAAAACTA
1 TAAAAAATTA-TAAAAACTA
*
32389151 T-AGAAATTATAAAAACTTA
1 TAAAAAATTATAAAAAC-TA
32389170 TAAAAAATTATA
1 TAAAAAATTATA
32389182 TTAAAATTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 7 0.26
19 10 0.37
20 10 0.37
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (19 bp):
TAAAAAATTATAAAAACTA
Found at i:32389172 original size:10 final size:10
Alignment explanation
Indices: 32389131--32389196 Score: 62
Period size: 10 Copynumber: 6.6 Consensus size: 10
32389121 TATATAAACG
32389131 TAAAAAATTA
1 TAAAAAATTA
* *
32389141 TTAAAAACTA
1 TAAAAAATTA
*
32389151 T-AGAAATTA
1 TAAAAAATTA
*
32389160 TAAAAACTTA
1 TAAAAAATTA
32389170 TAAAAAATTA
1 TAAAAAATTA
*
32389180 TATTAAAATTA
1 TA-AAAAATTA
*
32389191 GAAAAA
1 TAAAAA
32389197 GTATTAACAA
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
9 7 0.16
10 29 0.66
11 8 0.18
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:32392106 original size:30 final size:30
Alignment explanation
Indices: 32392072--32392283 Score: 424
Period size: 30 Copynumber: 7.1 Consensus size: 30
32392062 AATTAAGGTT
32392072 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
1 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
32392102 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
1 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
32392132 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
1 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
32392162 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
1 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
32392192 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
1 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
32392222 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
1 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
32392252 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
1 TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
32392282 TG
1 TG
32392284 TAGTAGTCTA
Statistics
Matches: 182, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 182 1.00
ACGTcount: A:0.20, C:0.07, G:0.37, T:0.37
Consensus pattern (30 bp):
TGGTGTTGCGGTTTTGAGTATGAAAGGCTA
Found at i:32397116 original size:15 final size:16
Alignment explanation
Indices: 32397096--32397130 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
32397086 ATCCTGCTAC
*
32397096 AATAATAACA-ATGTA
1 AATAATAAAAGATGTA
32397111 AATAATAAAAGATGTA
1 AATAATAAAAGATGTA
32397127 AATA
1 AATA
32397131 TTATTAGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.09, T:0.26
Consensus pattern (16 bp):
AATAATAAAAGATGTA
Found at i:32397322 original size:60 final size:57
Alignment explanation
Indices: 32397230--32397347 Score: 137
Period size: 60 Copynumber: 2.0 Consensus size: 57
32397220 CTATTTTTTA
* * * * * *
32397230 TCACTTAATTATGAAAAGTTATAATATAATCATCCTATTATGGTTTTTATTCTTTTTTGG
1 TCACTCAACTATGAAAAGTTACAAAATAATCATCCAATTAT--TATTT-TTCTTTTTTGG
* *
32397290 TCACTCAACTATGAAAAGTTACAAAATGATCATTCAATTATTATTTTTCTTTTTTGG
1 TCACTCAACTATGAAAAGTTACAAAATAATCATCCAATTATTATTTTTCTTTTTTGG
32397347 T
1 T
32397348 TACCCAACCA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
57 12 0.24
58 4 0.08
60 34 0.68
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.47
Consensus pattern (57 bp):
TCACTCAACTATGAAAAGTTACAAAATAATCATCCAATTATTATTTTTCTTTTTTGG
Found at i:32397729 original size:9 final size:9
Alignment explanation
Indices: 32397717--32397760 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
32397707 CAAAAATAAA
32397717 AAAATATTT
1 AAAATATTT
32397726 AAAATATTT
1 AAAATATTT
*
32397735 AAAA-ATAT
1 AAAATATTT
**
32397743 AAAATATAA
1 AAAATATTT
32397752 AAAATATTT
1 AAAATATTT
32397761 TTAACATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
8 7 0.23
9 23 0.77
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (9 bp):
AAAATATTT
Found at i:32397729 original size:17 final size:18
Alignment explanation
Indices: 32397709--32397760 Score: 65
Period size: 17 Copynumber: 3.0 Consensus size: 18
32397699 AGCTTTCTCA
32397709 AAAATA-AAAAAATATTT
1 AAAATATAAAAAATATTT
*
32397726 AAAATATTTAAAAATA--T
1 AAAATA-TAAAAAATATTT
32397743 AAAATATAAAAAATATTT
1 AAAATATAAAAAATATTT
32397761 TTAACATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
16 8 0.28
17 13 0.45
18 1 0.03
19 7 0.24
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAATATAAAAAATATTT
Found at i:32397746 original size:26 final size:27
Alignment explanation
Indices: 32397708--32397760 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
32397698 AAGCTTTCTC
**
32397708 AAAAATAAAAAAATATTTAAAATATTT
1 AAAAATAAAAAAATATAAAAAATATTT
*
32397735 AAAAAT-ATAAAATATAAAAAATATTT
1 AAAAATAAAAAAATATAAAAAATATTT
32397761 TTAACATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (27 bp):
AAAAATAAAAAAATATAAAAAATATTT
Found at i:32402710 original size:15 final size:14
Alignment explanation
Indices: 32402686--32402724 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
32402676 TTTATGAATT
32402686 AAAAAATAATTATA
1 AAAAAATAATTATA
32402700 AAAAGAATAATTATA
1 AAAA-AATAATTATA
*
32402715 TTAAAAATAA
1 -AAAAAATAA
32402725 ATAATATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 4 0.18
15 15 0.68
16 3 0.14
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (14 bp):
AAAAAATAATTATA
Found at i:32403004 original size:22 final size:22
Alignment explanation
Indices: 32402979--32403024 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
32402969 AATTGGATTT
*
32402979 AAAATTTAAAATTTAAAAAATA
1 AAAAATTAAAATTTAAAAAATA
*
32403001 AAAAATTAAAATTTTAAAAATA
1 AAAAATTAAAATTTAAAAAATA
32403023 AA
1 AA
32403025 TAAAAAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAAATTAAAATTTAAAAAATA
Found at i:32405732 original size:18 final size:18
Alignment explanation
Indices: 32405711--32405771 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
32405701 AAGGCGCAGA
32405711 TGAGGAAGAAGATGTATG
1 TGAGGAAGAAGATGTATG
* *
32405729 TGAGTAAGAAGATGCAAT-
1 TGAGGAAGAAGATG-TATG
* *
32405747 TGAGGAAAAAGATGTAGG
1 TGAGGAAGAAGATGTATG
32405765 TGAGGAA
1 TGAGGAA
32405772 CAATGGGTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 1 0.03
18 32 0.91
19 2 0.06
ACGTcount: A:0.43, C:0.02, G:0.36, T:0.20
Consensus pattern (18 bp):
TGAGGAAGAAGATGTATG
Found at i:32421596 original size:17 final size:17
Alignment explanation
Indices: 32421574--32421613 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
32421564 TTATATCTTA
32421574 TTTTGAGTAAATGTTTC
1 TTTTGAGTAAATGTTTC
* *
32421591 TTTTGAGTATATTTTTC
1 TTTTGAGTAAATGTTTC
*
32421608 CTTTGA
1 TTTTGA
32421614 CTCCTCTAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.20, C:0.07, G:0.15, T:0.57
Consensus pattern (17 bp):
TTTTGAGTAAATGTTTC
Found at i:32424472 original size:20 final size:21
Alignment explanation
Indices: 32424439--32424478 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
32424429 AAAAAAGAAG
* *
32424439 AAGAAGAAACAAATC-AACCA
1 AAGAAAAAAAAAATCTAACCA
32424459 AAGAAAAAAAAAATCTAACC
1 AAGAAAAAAAAAATCTAACC
32424479 TGTGTAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.68, C:0.17, G:0.07, T:0.07
Consensus pattern (21 bp):
AAGAAAAAAAAAATCTAACCA
Found at i:32424957 original size:15 final size:16
Alignment explanation
Indices: 32424937--32424968 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
32424927 ATTTTTAAGT
32424937 TTATAATA-TTTTATA
1 TTATAATATTTTTATA
32424952 TTATAATATTTTTATA
1 TTATAATATTTTTATA
32424968 T
1 T
32424969 ATTATGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATAATATTTTTATA
Found at i:32430241 original size:79 final size:79
Alignment explanation
Indices: 32430122--32430303 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 79
32430112 GAACATATCG
* * * * *
32430122 ACCTCTT-GTCCTTCCTAAT-AATATGAAACTCACATTATTTTTCGATTCTATTGTACATAAAAC
1 ACCTCTTCGCCCTTCCTAATCAATATGAAACTCACATAATTTTTCGACTCCATTATACATAAAAC
32430185 ATAT-TAATTCCAAA
66 ATATCT-ATTCCAAA
* * * * * * *
32430199 ATCTTTTTGCCCTTCCTAATCAATATGGAATTCACATAATTTTTTGACTCCATTATACATAGAAC
1 ACCTCTTCGCCCTTCCTAATCAATATGAAACTCACATAATTTTTCGACTCCATTATACATAAAAC
*
32430264 ATATCTATTCCAAG
66 ATATCTATTCCAAA
* *
32430278 ACCTCTTCGTCCTTCCTAACCAATAT
1 ACCTCTTCGCCCTTCCTAATCAATAT
32430304 AGGACCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
77 5 0.06
78 11 0.13
79 68 0.80
80 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (79 bp):
ACCTCTTCGCCCTTCCTAATCAATATGAAACTCACATAATTTTTCGACTCCATTATACATAAAAC
ATATCTATTCCAAA
Found at i:32430407 original size:146 final size:146
Alignment explanation
Indices: 32430230--32430518 Score: 388
Period size: 146 Copynumber: 2.0 Consensus size: 146
32430220 AATATGGAAT
*
32430230 TCACATAATTTTTTGACTCCATTATACATAGAACATATCTAT-TCCAAGACCTCTTCGTC-CTTC
1 TCACATAATTTTTTGACTCCATGATACATAGAACATATC-ATGTCCAAGACCTCTTCG-CACTTC
* ** * * *
32430293 CTAACCAATATAGGACC-AATGTTGCTTTCCGACTCCATTAAACATATCAACTAAGACCTCTTTG
64 CAAACCAATATA-GACCTAACATCGCTTTCCGACTCCAATAAACATATCAACCAAGACCTCTTTG
32430357 CCTTCCAAATCAATATTTG
128 CCTTCCAAATCAATATTTG
* * *
32430376 TCACATCATTTTTTGACTCTACTGA-ACATAGAACATATCATGTCCAATACCTCTTCGCACTTCC
1 TCACATAATTTTTTGACTCCA-TGATACATAGAACATATCATGTCCAAGACCTCTTCGCACTTCC
* * *
32430440 AAACCAATATAGACCTTACATCGCTTTCCGACTCCAATGAACATATCAACCAAGGCCTCTTTGCC
65 AAACCAATATAGACCTAACATCGCTTTCCGACTCCAATAAACATATCAACCAAGACCTCTTTGCC
*
32430505 TTCCTAATCAATAT
130 TTCCAAATCAATAT
32430519 GGAACTCAAA
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
145 7 0.06
146 116 0.93
147 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (146 bp):
TCACATAATTTTTTGACTCCATGATACATAGAACATATCATGTCCAAGACCTCTTCGCACTTCCA
AACCAATATAGACCTAACATCGCTTTCCGACTCCAATAAACATATCAACCAAGACCTCTTTGCCT
TCCAAATCAATATTTG
Found at i:32430674 original size:78 final size:77
Alignment explanation
Indices: 32430479--32430702 Score: 249
Period size: 78 Copynumber: 2.9 Consensus size: 77
32430469 GACTCCAATG
* * * * *
32430479 AACATATCAACCAAGGCCTC-TTTGCCTTCCTAATCAATATGGAACTCAAATCGTTTTTCGATTC
1 AACATATCAACCAAGACCTCTTTTCCCTTCCTAATCAATATGGAACTCACATCATTTTTCGACTC
*
32430543 CATTCTATGTAG
66 CATTCTATGTAA
* * * * *
32430555 AACATATAAATTCCAATACCTCTTTGCCCTTCCTAACCAATAT-GAGACTCGCATCATTTTTCGA
1 AACATATCAA--CCAAGACCTCTTTTCCCTTCCTAATCAATATGGA-ACTCACATCATTTTTCGA
*
32430619 CTCCATTGTAT-TAAAA
63 CTCCATTCTATGT--AA
*
32430635 AACATTTCAACCAAGACCTCTTTTCCCTTCCTAATCAATATGGAACTCACATCA-TTTTCTGACT
1 AACATATCAACCAAGACCTCTTTTCCCTTCCTAATCAATATGGAACTCACATCATTTTTC-GACT
32430699 CCAT
65 CCAT
32430703 AGAACATATC
Statistics
Matches: 122, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
76 9 0.07
77 5 0.04
78 56 0.46
79 43 0.35
80 9 0.07
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34
Consensus pattern (77 bp):
AACATATCAACCAAGACCTCTTTTCCCTTCCTAATCAATATGGAACTCACATCATTTTTCGACTC
CATTCTATGTAA
Found at i:32433463 original size:26 final size:26
Alignment explanation
Indices: 32433427--32433479 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32433417 GACTCGAACA
*
32433427 TATCAATTCCAATACCTCTTTTCCCT
1 TATCAATTCCAATACCTCTTTGCCCT
32433453 TATCAATTCCAATACCTCTTTGCCCT
1 TATCAATTCCAATACCTCTTTGCCCT
32433479 T
1 T
32433480 CCTAACCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.34, G:0.02, T:0.42
Consensus pattern (26 bp):
TATCAATTCCAATACCTCTTTGCCCT
Found at i:32433559 original size:132 final size:132
Alignment explanation
Indices: 32433321--32433655 Score: 607
Period size: 132 Copynumber: 2.5 Consensus size: 132
32433311 GACTCGAACA
* * *
32433321 TATCAATTCCAATACCTCTTTGCCCTTCCTAAACAATATGGGACTTGTATCGTTTTCCAACTCTA
1 TATCAATTCCAATACCTCTTTGCCCTTCCTAACCAATATGGGACTCGCATCGTTTTCCAACTCTA
* *
32433386 CTATATGAATATGGAACTCACACCATTTTTTGACTCGAACATATCAATTCCAATACCTCTTTTCC
66 CTATATGAATATGGAACTCACACCATTTTTCGACTCAAACATATCAATTCCAATACCTCTTTTCC
32433451 CT
131 CT
32433453 TATCAATTCCAATACCTCTTTGCCCTTCCTAACCAATATGGGACTCGCATCGTTTTCCAACTCTA
1 TATCAATTCCAATACCTCTTTGCCCTTCCTAACCAATATGGGACTCGCATCGTTTTCCAACTCTA
* *
32433518 TTTTATGAATATGGAACTCACACCATTTTTCGACTCAAACATATCAATTCCAATACCTCTTTTCC
66 CTATATGAATATGGAACTCACACCATTTTTCGACTCAAACATATCAATTCCAATACCTCTTTTCC
32433583 CT
131 CT
32433585 TATCAATTCCAATACCTCTTTGCCCTTCCTAACCAATATGGGACTCGCATCGTTTTCCAACTCTA
1 TATCAATTCCAATACCTCTTTGCCCTTCCTAACCAATATGGGACTCGCATCGTTTTCCAACTCTA
32433650 CTATAT
66 CTATAT
32433656 TAAAGAACAT
Statistics
Matches: 194, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 194 1.00
ACGTcount: A:0.27, C:0.29, G:0.08, T:0.36
Consensus pattern (132 bp):
TATCAATTCCAATACCTCTTTGCCCTTCCTAACCAATATGGGACTCGCATCGTTTTCCAACTCTA
CTATATGAATATGGAACTCACACCATTTTTCGACTCAAACATATCAATTCCAATACCTCTTTTCC
CT
Found at i:32433595 original size:26 final size:26
Alignment explanation
Indices: 32433559--32433611 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32433549 GACTCAAACA
*
32433559 TATCAATTCCAATACCTCTTTTCCCT
1 TATCAATTCCAATACCTCTTTGCCCT
32433585 TATCAATTCCAATACCTCTTTGCCCT
1 TATCAATTCCAATACCTCTTTGCCCT
32433611 T
1 T
32433612 CCTAACCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.34, G:0.02, T:0.42
Consensus pattern (26 bp):
TATCAATTCCAATACCTCTTTGCCCT
Found at i:32433694 original size:78 final size:79
Alignment explanation
Indices: 32433589--32433812 Score: 274
Period size: 79 Copynumber: 2.8 Consensus size: 79
32433579 TTCCCTTATC
* *
32433589 AATTCCAATACCTCTTTGCCCTTCCTAACCAATATGGGACTCGCATCGTTTTCCAACTCTACTAT
1 AATTCCAATACCTCTTTGCCCTTCCTAACCAATATGGGACTCGCATCGTTTTCCGACTCCACTAT
32433654 AT-TA-AAGA-ACA
66 ATGTAGAAGATACA
* * * * * * *
32433665 TATTGACCAAGACCTCTTTGCCCTCCCTAATCAATATGGAACTCACAATCGTTTTCCGACTCCAT
1 AATT--CCAATACCTCTTTGCCCTTCCTAACCAATATGGGACTCGC-ATCGTTTTCCGACTCCAC
* *
32433730 TGTATGTAGAAGATATA
63 TATATGTAGAAGATACA
* * *
32433747 AATTCCAATACCTCTTTACCCTTCCTAACCAATATGGGACTTGCATCATTTTCCGACTCCACTAT
1 AATTCCAATACCTCTTTGCCCTTCCTAACCAATATGGGACTCGCATCGTTTTCCGACTCCACTAT
32433812 A
66 A
32433813 CAAAAAACCA
Statistics
Matches: 120, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
76 3 0.03
78 35 0.29
79 38 0.32
80 35 0.29
81 4 0.03
82 5 0.04
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (79 bp):
AATTCCAATACCTCTTTGCCCTTCCTAACCAATATGGGACTCGCATCGTTTTCCGACTCCACTAT
ATGTAGAAGATACA
Found at i:32444988 original size:11 final size:11
Alignment explanation
Indices: 32444967--32444998 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
32444957 TGACACATAG
32444967 AATATTTTTATA
1 AATA-TTTTATA
32444979 AATATTTTATA
1 AATATTTTATA
32444990 AATATTTTA
1 AATATTTTA
32444999 ACTTTTTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
AATATTTTATA
Found at i:32454926 original size:22 final size:23
Alignment explanation
Indices: 32454901--32454944 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
32454891 AGTCTTTGAA
*
32454901 CTTGGTATTT-TTTTTTTTTTAT
1 CTTGGTATTTATTTTTATTTTAT
*
32454923 CTTGGTCTTTATTTTTATTTTA
1 CTTGGTATTTATTTTTATTTTA
32454945 CTTTTTGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.11, C:0.07, G:0.09, T:0.73
Consensus pattern (23 bp):
CTTGGTATTTATTTTTATTTTAT
Found at i:32455079 original size:16 final size:16
Alignment explanation
Indices: 32455060--32455100 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
32455050 AATTATAATT
32455060 TATTTATATTTTTAAA
1 TATTTATATTTTTAAA
*
32455076 TATTTTTATTTTTTAAA
1 TATTTATA-TTTTTAAA
32455093 T-TTTATAT
1 TATTTATAT
32455101 GATTTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 1 0.05
16 12 0.55
17 9 0.41
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTATATTTTTAAA
Found at i:32468766 original size:51 final size:50
Alignment explanation
Indices: 32468675--32468773 Score: 126
Period size: 51 Copynumber: 2.0 Consensus size: 50
32468665 CACGTTCTGT
* *
32468675 TAAATTGGTCTTGGTTTAAAAAATTTAGCCCGCAACATTTACACATTCGA
1 TAAATTGGTCTTGATTTAAAAAATTTAGCACGCAACATTTACACATTCGA
* * * * *
32468725 TAAATTGAGTCTTGATTTAACAAATTTAGTACTCAATATTTATACATTC
1 TAAATTG-GTCTTGATTTAAAAAATTTAGCACGCAACATTTACACATTC
32468774 TATTAATATT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
50 7 0.17
51 34 0.83
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.38
Consensus pattern (50 bp):
TAAATTGGTCTTGATTTAAAAAATTTAGCACGCAACATTTACACATTCGA
Found at i:32474776 original size:17 final size:17
Alignment explanation
Indices: 32474754--32474786 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
32474744 AAATTCTTTT
32474754 TAAATCACAAAATTCAA
1 TAAATCACAAAATTCAA
32474771 TAAATCACAAAATTCA
1 TAAATCACAAAATTCA
32474787 CTAATTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAATCACAAAATTCAA
Found at i:32484015 original size:14 final size:14
Alignment explanation
Indices: 32483996--32484034 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
32483986 CCAAAAAAGT
32483996 AAATCATTTTCCAA
1 AAATCATTTTCCAA
**
32484010 AAATCATTTTCTGA
1 AAATCATTTTCCAA
*
32484024 AAACCATTTTC
1 AAATCATTTTC
32484035 AGTGAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.38, C:0.21, G:0.03, T:0.38
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:32508784 original size:31 final size:31
Alignment explanation
Indices: 32508728--32508818 Score: 85
Period size: 31 Copynumber: 2.9 Consensus size: 31
32508718 GACGACAACC
* * * *
32508728 TACCACCCTGAATTGGCCGATAATGATGAAT
1 TACCACTCTGGATTGCCCGACAATGATGAAT
* **
32508759 TGCCAC-CTCGGATTGCCCGACAATGATGGTT
1 TACCACTCT-GGATTGCCCGACAATGATGAAT
* *
32508790 TACCACTCTGGATTACTCGACAATGATGA
1 TACCACTCTGGATTGCCCGACAATGATGA
32508819 CCTACCATCC
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
30 2 0.04
31 44 0.92
32 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (31 bp):
TACCACTCTGGATTGCCCGACAATGATGAAT
Found at i:32516641 original size:534 final size:534
Alignment explanation
Indices: 32515633--32516702 Score: 2005
Period size: 534 Copynumber: 2.0 Consensus size: 534
32515623 AAACTCCATT
32515633 ATCTTTAGCGAACTGCCCCACAGACAACAAATTTTTACACACAGTAGGAACATGTAAAACATGTT
1 ATCTTTAGCGAACTGCCCCACAGACAACAAATTTTTACACACAGTAGGAACATGTAAAACATGTT
32515698 GAAGGTGTAGAAGTCTAGAACCAACCATAACTGTAGAAGAACCTACATTAGCTATAGAAGCAGAC
66 GAAGGTGTAGAAGTCTAGAACCAACCATAACTGTAGAAGAACCTACATTAGCTATAGAAGCAGAC
32515763 TTACCGTTGCCCATAACGACTTGTCCTGTACCTATATATGGAGAGACAAACACCAGATTAGAATC
131 TTACCGTTGCCCATAACGACTTGTCCTGTACCTATATATGGAGAGACAAACACCAGATTAGAATC
*
32515828 ATCAGGTGTAACATGATTCGTCGCAACCGAGTCTGGATACCAAGTCTGACCAGAAGTTGTGGATG
196 ATCAGGTGTAACATGATTCGTCGCAACCGAGTCTGGATACCAAGTCTGACCAGAAGTTGTAGATG
32515893 AAGAACAAGAACACGAGCCAGAACAGTGAACAGGAGAGCATGCGGTTGCAGGAGTCAAACCATGA
261 AAGAACAAGAACACGAGCCAGAACAGTGAACAGGAGAGCATGCGGTTGCAGGAGTCAAACCATGA
*
32515958 GCTTGATGAAAATTAATCGAAGGGTTTTGACTAAAGAAATTCTCATCAAATCGATGATAACAGTT
326 GCTTGATGAAAATTAATCGAAGGGTTTTGACCAAAGAAATTCTCATCAAATCGATGATAACAGTT
*
32516023 TTGAACAATATGGCCAATTTTGCTACACAGTTGACATTGAGGTCTAGACCGAGACCAGCTACGAC
391 TTGAACAATATGGCCAATTTTGCCACACAGTTGACATTGAGGTCTAGACCGAGACCAGCTACGAC
* * * *
32516088 CACCGCCTCTAGTTCTACCACGCGATCAGCCTCGGCCTGAACTACGATTACCTTGCCTGGAGTCT
456 CACCACCTCTAGTTCTACCACGCGACCAGCCGCGGCATGAACTACGATTACCTTGCCTGGAGTCT
32516153 TGAGAACGCAAAGG
521 TGAGAACGCAAAGG
32516167 ATCTTTAGCGAACTGCCCCACAGACAACAAATTTTTACACACAGTAGGAACATGTAAAACATGTT
1 ATCTTTAGCGAACTGCCCCACAGACAACAAATTTTTACACACAGTAGGAACATGTAAAACATGTT
32516232 GAAGGTGTAGAAGTCTAGAACCAACCATAACTGTAGAAGAACCTACATTAGCTATAGAAGCAGAC
66 GAAGGTGTAGAAGTCTAGAACCAACCATAACTGTAGAAGAACCTACATTAGCTATAGAAGCAGAC
* * *
32516297 TTACCGTTGCCCGTAACGACTTGTCCTGTACCTGTATATGGAGAGACAGACACCAGATTAGAATC
131 TTACCGTTGCCCATAACGACTTGTCCTGTACCTATATATGGAGAGACAAACACCAGATTAGAATC
*
32516362 ATCAGGTGTAACATGATTCGTCGCACCCGAGTCTGGATACCAAGTCTGACCAGAAGTTGTAGATG
196 ATCAGGTGTAACATGATTCGTCGCAACCGAGTCTGGATACCAAGTCTGACCAGAAGTTGTAGATG
*
32516427 AAGAACAAGAACACGAGCCAGAACAGTGAACATGAGAGCATGCGGTTGCAGGAGTCAAACCATGA
261 AAGAACAAGAACACGAGCCAGAACAGTGAACAGGAGAGCATGCGGTTGCAGGAGTCAAACCATGA
* *
32516492 GCTTGATGAAAATTAATCGAGGGGTTTTGACCAAAGAAATTCTCATCAAATCGATGATAATAGTT
326 GCTTGATGAAAATTAATCGAAGGGTTTTGACCAAAGAAATTCTCATCAAATCGATGATAACAGTT
32516557 TTGAACAATATGGCCAATTTTGCCACACAGTTGACATTGAGGTCTAGACCGAGACCAGCTACGAC
391 TTGAACAATATGGCCAATTTTGCCACACAGTTGACATTGAGGTCTAGACCGAGACCAGCTACGAC
*
32516622 CACCACCTCTAGTTCTACCACGCGACCAGCCGCGGCATGAACTACGATTACTTTGCCTGGAGTCT
456 CACCACCTCTAGTTCTACCACGCGACCAGCCGCGGCATGAACTACGATTACCTTGCCTGGAGTCT
32516687 TGAGAACGCAAAGG
521 TGAGAACGCAAAGG
32516701 AT
1 AT
32516703 AACCTTCAAG
Statistics
Matches: 521, Mismatches: 15, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
534 521 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (534 bp):
ATCTTTAGCGAACTGCCCCACAGACAACAAATTTTTACACACAGTAGGAACATGTAAAACATGTT
GAAGGTGTAGAAGTCTAGAACCAACCATAACTGTAGAAGAACCTACATTAGCTATAGAAGCAGAC
TTACCGTTGCCCATAACGACTTGTCCTGTACCTATATATGGAGAGACAAACACCAGATTAGAATC
ATCAGGTGTAACATGATTCGTCGCAACCGAGTCTGGATACCAAGTCTGACCAGAAGTTGTAGATG
AAGAACAAGAACACGAGCCAGAACAGTGAACAGGAGAGCATGCGGTTGCAGGAGTCAAACCATGA
GCTTGATGAAAATTAATCGAAGGGTTTTGACCAAAGAAATTCTCATCAAATCGATGATAACAGTT
TTGAACAATATGGCCAATTTTGCCACACAGTTGACATTGAGGTCTAGACCGAGACCAGCTACGAC
CACCACCTCTAGTTCTACCACGCGACCAGCCGCGGCATGAACTACGATTACCTTGCCTGGAGTCT
TGAGAACGCAAAGG
Found at i:32517413 original size:77 final size:77
Alignment explanation
Indices: 32517285--32517461 Score: 257
Period size: 77 Copynumber: 2.3 Consensus size: 77
32517275 ATCTATATAG
* *
32517285 AAGCAACTTATCATATATTTTCACTAATGCTGATGTTCTTTTCTTCACCTTACATTTAGAGATGC
1 AAGCAACTTATCATATA-TTTCACTAATGCTGATGTTCCTTTCTTAACCTTACATTTAGAGATGC
*
32517350 ATACACTGCATAA
65 ATACACTACATAA
* * * *
32517363 AAGCAACTTATCGTATATTTCAGTAATG-TCGATGTTCCTTTCTTAACCTTACATTTATATATGC
1 AAGCAACTTATCATATATTTCACTAATGCT-GATGTTCCTTTCTTAACCTTACATTTAGAGATGC
32517427 ATACACTACATAA
65 ATACACTACATAA
*
32517440 AACCAACTTATCATATATTTCA
1 AAGCAACTTATCATATATTTCA
32517462 ATAAACCAAA
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
76 1 0.01
77 72 0.81
78 16 0.18
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.38
Consensus pattern (77 bp):
AAGCAACTTATCATATATTTCACTAATGCTGATGTTCCTTTCTTAACCTTACATTTAGAGATGCA
TACACTACATAA
Found at i:32519313 original size:94 final size:94
Alignment explanation
Indices: 32519150--32519341 Score: 350
Period size: 94 Copynumber: 2.0 Consensus size: 94
32519140 TTTCTCTTTA
32519150 CTTTTTTAAAGCTTAATCTCACCTTAAGTGTTACCTGTTTTAGTTCCTACAAGTTAATTTCTGCT
1 CTTTTTT-AAGCTTAATCTCACCTTAAGTGTTACCTGTTTTAGTTCCTACAAGTTAATTTCTGCT
32519215 GAAATTGCTATTTTATTTTATTCATTGTTG
65 GAAATTGCTATTTTATTTTATTCATTGTTG
32519245 CTTTTTT-AGCTTAATCGTCACCTTAAGTGTTACCTGTTTTAGTTCCTACAAGTTAATTTCTGCT
1 CTTTTTTAAGCTTAATC-TCACCTTAAGTGTTACCTGTTTTAGTTCCTACAAGTTAATTTCTGCT
*
32519309 GAAATTGCTATTTTATTTTATTCCTTGTTG
65 GAAATTGCTATTTTATTTTATTCATTGTTG
32519339 CTT
1 CTT
32519342 ATTTCATCGA
Statistics
Matches: 95, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
93 9 0.09
94 79 0.83
95 7 0.07
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.50
Consensus pattern (94 bp):
CTTTTTTAAGCTTAATCTCACCTTAAGTGTTACCTGTTTTAGTTCCTACAAGTTAATTTCTGCTG
AAATTGCTATTTTATTTTATTCATTGTTG
Found at i:32527293 original size:18 final size:17
Alignment explanation
Indices: 32527265--32527299 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32527255 ATTTTTAAGA
*
32527265 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
32527282 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
32527300 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:32527553 original size:16 final size:16
Alignment explanation
Indices: 32527532--32527570 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
32527522 TTGATTTGCT
*
32527532 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
32527548 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
32527564 ATTACAC
1 ATTACAC
32527571 TTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:32527575 original size:16 final size:16
Alignment explanation
Indices: 32527545--32527601 Score: 78
Period size: 16 Copynumber: 3.6 Consensus size: 16
32527535 ACACAGCTTT
* *
32527545 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
* *
32527561 TCCATTACACTTCTAA
1 TCCAATACACCTCTAA
32527577 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
32527593 TCCAATACA
1 TCCAATACA
32527602 GCGAACCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.33, C:0.35, G:0.00, T:0.32
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:32527868 original size:4 final size:4
Alignment explanation
Indices: 32527859--32527969 Score: 70
Period size: 4 Copynumber: 27.0 Consensus size: 4
32527849 TATTGAAATT
* * * *
32527859 GAAA GAAA GAAA GAAA GAAA GAAA GGAAG GAAG GAAG GAGAG GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA -GAAA GAAA GAAA GA-AA GAAA GAAA
*
32527909 G-AA -AAA GAAG GAAA GAAAA GGAAA G-AA G-AA GAAGA GGAAA GGAGAA
1 GAAA GAAA GAAA GAAA G-AAA -GAAA GAAA GAAA GAA-A -GAAA -GA-AA
32527955 GAAA -AAA GAAA GAAA
1 GAAA GAAA GAAA GAAA
32527970 AAGAAGGAAA
Statistics
Matches: 92, Mismatches: 4, Indels: 22
0.78 0.03 0.19
Matches are distributed among these distances:
3 13 0.14
4 53 0.58
5 20 0.22
6 6 0.07
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:32527917 original size:10 final size:10
Alignment explanation
Indices: 32527906--32527979 Score: 51
Period size: 10 Copynumber: 7.1 Consensus size: 10
32527896 GAGAGGAAAG
32527906 AAAGAAA-AA
1 AAAGAAAGAA
*
32527915 GAAGGAAAGAA
1 -AAAGAAAGAA
*
32527926 AAGGAAAGAA
1 AAAGAAAGAA
* *
32527936 GAAGAAGAGGA
1 AAAGAA-AGAA
*
32527947 AAGGAGAAGAAA
1 AAAGA-AAG-AA
32527959 AAAGAAAGAA
1 AAAGAAAGAA
*
32527969 AAAGAAGGAA
1 AAAGAAAGAA
32527979 A
1 A
32527980 GGAAAGGAGA
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
10 32 0.63
11 13 0.25
12 6 0.12
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
AAAGAAAGAA
Found at i:32527963 original size:57 final size:55
Alignment explanation
Indices: 32527902--32528026 Score: 166
Period size: 57 Copynumber: 2.3 Consensus size: 55
32527892 GAAGGAGAGG
32527902 AAAGAAAGAAAAAGAAGGAAAGAAAAGGA-AAGA-AGAAGAAGAGGAAAGGAGAAGAAA
1 AAAGAAAGAAAAAGAAGGAAAGAAAAGGAGAAGAGAGAAGAA-AGG-AAGGA-AA-AAA
* * *
32527959 AAAGAAAGAAAAAGAAGGAAAGGAAAGGAGAAGAGGGAAGCAAGGAAGGAAAAAA
1 AAAGAAAGAAAAAGAAGGAAAGAAAAGGAGAAGAGAGAAGAAAGGAAGGAAAAAA
32528014 AAAGAAA-AAAAAG
1 AAAGAAAGAAAAAG
32528027 GTAATTTTTT
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
54 6 0.10
55 10 0.16
56 2 0.03
57 33 0.52
58 7 0.11
59 5 0.08
ACGTcount: A:0.68, C:0.01, G:0.31, T:0.00
Consensus pattern (55 bp):
AAAGAAAGAAAAAGAAGGAAAGAAAAGGAGAAGAGAGAAGAAAGGAAGGAAAAAA
Found at i:32527983 original size:36 final size:39
Alignment explanation
Indices: 32527920--32527992 Score: 109
Period size: 36 Copynumber: 1.9 Consensus size: 39
32527910 AAAAAGAAGG
32527920 AAAGAAAAGGAAAGAAGAAGAAGAGGAAAGGAGAAGAAA
1 AAAGAAAAGGAAAGAAGAAGAAGAGGAAAGGAGAAGAAA
32527959 AAAG-AAA-GAAA-AAGAAGGAA-AGGAAAGGAGAAGA
1 AAAGAAAAGGAAAGAAGAA-GAAGAGGAAAGGAGAAGA
32527993 GGGAAGCAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
36 19 0.58
37 7 0.21
38 3 0.09
39 4 0.12
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (39 bp):
AAAGAAAAGGAAAGAAGAAGAAGAGGAAAGGAGAAGAAA
Found at i:32530182 original size:3 final size:3
Alignment explanation
Indices: 32530174--32530205 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
32530164 NNNNNNNNNN
32530174 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
32530206 TAATAATACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:32530351 original size:11 final size:11
Alignment explanation
Indices: 32530332--32530370 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
32530322 TAAAAATACA
32530332 TTCTTTTTCTC
1 TTCTTTTTCTC
*
32530343 TTCTCTTTCTC
1 TTCTTTTTCTC
32530354 -TCTTTTTCTC
1 TTCTTTTTCTC
32530364 TTCTTTT
1 TTCTTTT
32530371 CCACAACACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 9 0.36
11 16 0.64
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (11 bp):
TTCTTTTTCTC
Found at i:32530358 original size:21 final size:20
Alignment explanation
Indices: 32530333--32530371 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
32530323 AAAAATACAT
32530333 TCTTTTTCTCTTCTCTTTCTC
1 TCTTTTTCTCTTCT-TTTCTC
32530354 TCTTTTTCTCTTCTTTTC
1 TCTTTTTCTCTTCTTTTC
32530372 CACAACACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (20 bp):
TCTTTTTCTCTTCTTTTCTC
Found at i:32530489 original size:27 final size:27
Alignment explanation
Indices: 32530451--32530551 Score: 123
Period size: 27 Copynumber: 3.7 Consensus size: 27
32530441 AACACGAGTA
*
32530451 GTGCCACCAATGCCTTTGGCACCATTG
1 GTGCCGCCAATGCCTTTGGCACCATTG
**
32530478 GTGCCGCCAATGGTTTTGGCA-CATTTG
1 GTGCCGCCAATGCCTTTGGCACCA-TTG
* *
32530505 GTGCCGCCAATGGCTTTGGCACCTTTG
1 GTGCCGCCAATGCCTTTGGCACCATTG
* *
32530532 GTGCCGCCAATACCATTGGC
1 GTGCCGCCAATGCCTTTGGC
32530552 CTGATCAGGC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.03
27 61 0.95
28 1 0.02
ACGTcount: A:0.16, C:0.30, G:0.27, T:0.28
Consensus pattern (27 bp):
GTGCCGCCAATGCCTTTGGCACCATTG
Found at i:32530666 original size:25 final size:29
Alignment explanation
Indices: 32530610--32530674 Score: 93
Period size: 25 Copynumber: 2.3 Consensus size: 29
32530600 TTTTTTTGAT
32530610 ATATTTTGGTAAATAATAAAAATAATTATA
1 ATATTTTGGT-AATAATAAAAATAATTATA
32530640 ATATTTTGGT-A-AAT-AAAA-AATTATA
1 ATATTTTGGTAATAATAAAAATAATTATA
32530665 ATATTTTGGT
1 ATATTTTGGT
32530675 TATTTTTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
25 17 0.49
26 4 0.11
27 3 0.09
28 1 0.03
30 10 0.29
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (29 bp):
ATATTTTGGTAATAATAAAAATAATTATA
Found at i:32539147 original size:22 final size:21
Alignment explanation
Indices: 32539119--32539159 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
32539109 TGAACTTTTT
*
32539119 ATATTTTATAATTTATTTTTGA
1 ATATTTT-TAAATTATTTTTGA
32539141 ATATTTTTAAATTATTTTT
1 ATATTTTTAAATTATTTTT
32539160 AGCGCGTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (21 bp):
ATATTTTTAAATTATTTTTGA
Found at i:32540074 original size:27 final size:27
Alignment explanation
Indices: 32540010--32540077 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
32540000 GATTTAGGGG
*
32540010 CTGCCACAGGCGGCACCAAAGGTGCTA
1 CTGCCACAGGCGGCACCAAAGGTGCCA
* * *
32540037 GTGACAAAGGCGGCACCAAAGGTGCCA
1 CTGCCACAGGCGGCACCAAAGGTGCCA
32540064 CTGCCACAGGCGGC
1 CTGCCACAGGCGGC
32540078 TCCCCAGCCC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.26, C:0.32, G:0.32, T:0.09
Consensus pattern (27 bp):
CTGCCACAGGCGGCACCAAAGGTGCCA
Found at i:32540179 original size:3 final size:3
Alignment explanation
Indices: 32540171--32540273 Score: 61
Period size: 3 Copynumber: 35.0 Consensus size: 3
32540161 AAAGAATGAG
* * *
32540171 AGA AGA AGA A-A AGA AGA AG- AGA AG- AGA AGA AGA AGA AGG GGA AGG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
* * * * * * * *
32540216 AGG CGC AGA AGGA AGA AAA AGGA AAA AGA AAA AG- AGA AGG AGA AGG
1 AGA AGA AGA A-GA AGA AGA A-GA AGA AGA AGA AGA AGA AGA AGA AGA
32540262 AGA AGA AGA AGA
1 AGA AGA AGA AGA
32540274 GGGAGGGAAG
Statistics
Matches: 75, Mismatches: 19, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
2 8 0.11
3 62 0.83
4 5 0.07
ACGTcount: A:0.60, C:0.02, G:0.38, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:32540184 original size:19 final size:18
Alignment explanation
Indices: 32540160--32540208 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 18
32540150 GCTGCAGGAA
32540160 AAAAGAATG-AGAGAAGAAG
1 AAAAGAA-GAAGAGAAG-AG
32540179 AAAAGAAGAAGAGAAGAG
1 AAAAGAAGAAGAGAAGAG
32540197 AAGAAGAAGAAG
1 AA-AAGAAGAAG
32540209 GGGAAGGAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.18
19 23 0.82
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (18 bp):
AAAAGAAGAAGAGAAGAG
Found at i:32540185 original size:11 final size:11
Alignment explanation
Indices: 32540171--32540208 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
32540161 AAAGAATGAG
32540171 AGAAGAAGAAA
1 AGAAGAAGAAA
*
32540182 AGAAGAAGAGA
1 AGAAGAAGAAA
32540193 AG-AGAAGAAGA
1 AGAAGAAGAA-A
32540204 AGAAG
1 AGAAG
32540209 GGGAAGGAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 6 0.26
11 15 0.65
12 2 0.09
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (11 bp):
AGAAGAAGAAA
Found at i:32540278 original size:15 final size:15
Alignment explanation
Indices: 32540162--32540278 Score: 53
Period size: 13 Copynumber: 8.6 Consensus size: 15
32540152 TGCAGGAAAA
*
32540162 AAGAATGAG-AGAAG
1 AAGAAGGAGAAGAAG
*
32540176 AAGAA-AAGAAGAAG
1 AAGAAGGAGAAGAAG
32540190 -AGAA-GAGAAGAAG
1 AAGAAGGAGAAGAAG
32540203 AAGAAGG-G--GAAG
1 AAGAAGGAGAAGAAG
* ** *
32540215 GAGGCGCAGAAGGAAG
1 AAGAAGGAGAA-GAAG
*
32540231 AAAAAGGA-AA-AAG
1 AAGAAGGAGAAGAAG
32540244 AA-AA--AG-AGAAG
1 AAGAAGGAGAAGAAG
*
32540255 GAGAAGGAGAAGAAG
1 AAGAAGGAGAAGAAG
*
32540270 AAGAGGGAG
1 AAGAAGGAG
32540279 GGAAGGAAAA
Statistics
Matches: 76, Mismatches: 14, Indels: 25
0.66 0.12 0.22
Matches are distributed among these distances:
10 2 0.03
11 4 0.05
12 11 0.14
13 20 0.26
14 17 0.22
15 15 0.20
16 7 0.09
ACGTcount: A:0.58, C:0.02, G:0.39, T:0.01
Consensus pattern (15 bp):
AAGAAGGAGAAGAAG
Found at i:32540298 original size:58 final size:60
Alignment explanation
Indices: 32540179--32540312 Score: 145
Period size: 61 Copynumber: 2.3 Consensus size: 60
32540169 AGAGAAGAAG
* ** *
32540179 AAAAGAAGAAGAGAA-GAGAAGAAGAAGAAGGGGAAGGAGGCGCAGAAGGAAGAAAAAGGA
1 AAAAGAAAAAGAGAAGGAGAAGAAGAAGAAGAAGAAGGAGGCG-AGAAGGAAAAAAAAGGA
* *
32540239 AAAAGAAAAAGAGAAGGAGAAGGAGAAGAAGAAGAGGGA-G-G-GAAGGAAAAAGAAAGGA
1 AAAAGAAAAAGAGAAGGAGAAGAAGAAGAAGAAGAAGGAGGCGAGAAGGAAAAA-AAAGGA
32540297 AAAA-AATAAAGA-AAGG
1 AAAAGAA-AAAGAGAAGG
32540313 TAATTTTTTT
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
57 15 0.23
58 15 0.23
59 1 0.02
60 15 0.23
61 19 0.29
ACGTcount: A:0.60, C:0.01, G:0.37, T:0.01
Consensus pattern (60 bp):
AAAAGAAAAAGAGAAGGAGAAGAAGAAGAAGAAGAAGGAGGCGAGAAGGAAAAAAAAGGA
Found at i:32540538 original size:16 final size:16
Alignment explanation
Indices: 32540517--32540567 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
32540507 TATTAAATTT
32540517 TATGTTATGTACATTC
1 TATGTTATGTACATTC
*
32540533 TATGTT-T-TATTATT-
1 TATGTTATGTA-CATTC
*
32540547 TATGTTATGTACATAC
1 TATGTTATGTACATTC
32540563 TATGT
1 TATGT
32540568 CTTATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
14 8 0.29
15 7 0.25
16 13 0.46
ACGTcount: A:0.25, C:0.08, G:0.12, T:0.55
Consensus pattern (16 bp):
TATGTTATGTACATTC
Found at i:32540549 original size:30 final size:30
Alignment explanation
Indices: 32540515--32540641 Score: 166
Period size: 30 Copynumber: 4.1 Consensus size: 30
32540505 TATATTAAAT
32540515 TTTATGTTATGTACATTCTATGTTTTATTA
1 TTTATGTTATGTACATTCTATGTTTTATTA
* *
32540545 TTTATGTTATGTACATACTATGTCTTATTA
1 TTTATGTTATGTACATTCTATGTTTTATTA
* *
32540575 TTTTATTATTTATGTTATTATT-TATGTTTTATTA
1 -TTTA-T-GTTATG-TA-CATTCTATGTTTTATTA
32540609 TTTATGTTATGTACATTCTATGTTTTATTA
1 TTTATGTTATGTACATTCTATGTTTTATTA
32540639 TTT
1 TTT
32540642 TATTTTATTT
Statistics
Matches: 83, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
29 3 0.04
30 45 0.54
31 9 0.11
32 2 0.02
33 9 0.11
34 13 0.16
35 2 0.02
ACGTcount: A:0.24, C:0.06, G:0.09, T:0.62
Consensus pattern (30 bp):
TTTATGTTATGTACATTCTATGTTTTATTA
Found at i:32540592 original size:12 final size:12
Alignment explanation
Indices: 32540572--32540618 Score: 67
Period size: 12 Copynumber: 3.8 Consensus size: 12
32540562 CTATGTCTTA
*
32540572 TTATTTTATTAT
1 TTATGTTATTAT
32540584 TTATGTTATTAT
1 TTATGTTATTAT
32540596 TTATGTTTTATTAT
1 TTATG--TTATTAT
32540610 TTATGTTAT
1 TTATGTTAT
32540619 GTACATTCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 20 0.62
14 12 0.38
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.70
Consensus pattern (12 bp):
TTATGTTATTAT
Found at i:32540604 original size:26 final size:26
Alignment explanation
Indices: 32540575--32540655 Score: 99
Period size: 26 Copynumber: 2.9 Consensus size: 26
32540565 TGTCTTATTA
32540575 TTTTATTATTTATGTTATTATTTATG
1 TTTTATTATTTATGTTATTATTTATG
32540601 TTTTATTATTTATGTTATGTACATTCTATG
1 TTTTATTATTTATGTTAT-T--ATT-TATG
*
32540631 TTTTATTATTTTATTTTATTTATTT
1 TTTTATTA-TTTATGTTA-TTATTT
32540656 GTTAAGTGTG
Statistics
Matches: 48, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
26 18 0.38
27 1 0.02
28 1 0.02
29 6 0.12
30 12 0.25
31 9 0.19
32 1 0.02
ACGTcount: A:0.22, C:0.02, G:0.06, T:0.69
Consensus pattern (26 bp):
TTTTATTATTTATGTTATTATTTATG
Found at i:32540608 original size:14 final size:14
Alignment explanation
Indices: 32540575--32540655 Score: 80
Period size: 14 Copynumber: 5.8 Consensus size: 14
32540565 TGTCTTATTA
32540575 TTTTATTATTTATG
1 TTTTATTATTTATG
32540589 --TTATTATTTATG
1 TTTTATTATTTATG
32540601 TTTTATTATTTATG
1 TTTTATTATTTATG
*
32540615 TTATGTA-CATTCTATG
1 TT-T-TATTATT-TATG
*
32540631 TTTTATTATTT-TA
1 TTTTATTATTTATG
32540644 TTTTATTTATTT
1 TTTTA-TTATTT
32540656 GTTAAGTGTG
Statistics
Matches: 57, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
12 12 0.21
13 6 0.11
14 23 0.40
15 8 0.14
16 8 0.14
ACGTcount: A:0.22, C:0.02, G:0.06, T:0.69
Consensus pattern (14 bp):
TTTTATTATTTATG
Found at i:32540608 original size:64 final size:67
Alignment explanation
Indices: 32540515--32540645 Score: 214
Period size: 64 Copynumber: 2.0 Consensus size: 67
32540505 TATATTAAAT
32540515 TTTATGTTATGTACATTCTATGTTTTATTATTTATGTTATGTACATACTATGTCTTATTATTTTA
1 TTTATGTTATGTA-ATTCTATGTTTTATTATTTATGTTATGTACATACTATGTCTTATTATTTTA
32540580 TTA
65 TTA
* *
32540583 TTTATGTTAT-T-ATT-TATGTTTTATTATTTATGTTATGTACATTCTATGTTTTATTATTTTAT
1 TTTATGTTATGTAATTCTATGTTTTATTATTTATGTTATGTACATACTATGTCTTATTATTTTAT
32540645 T
66 T
32540646 TTATTTATTT
Statistics
Matches: 61, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
64 47 0.77
65 3 0.05
67 1 0.02
68 10 0.16
ACGTcount: A:0.24, C:0.05, G:0.08, T:0.63
Consensus pattern (67 bp):
TTTATGTTATGTAATTCTATGTTTTATTATTTATGTTATGTACATACTATGTCTTATTATTTTAT
TA
Found at i:32540789 original size:15 final size:15
Alignment explanation
Indices: 32540743--32540790 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
32540733 ACATAGTATT
32540743 AAAAATAAAATACCGA
1 AAAAATAAAATA-CGA
** *
32540759 AAAAAT-ATGTATGA
1 AAAAATAAAATACGA
32540773 AAAAATAAAATACGA
1 AAAAATAAAATACGA
32540788 AAA
1 AAA
32540791 GAAAAAAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
14 8 0.32
15 11 0.44
16 6 0.24
ACGTcount: A:0.69, C:0.06, G:0.08, T:0.17
Consensus pattern (15 bp):
AAAAATAAAATACGA
Found at i:32541094 original size:160 final size:160
Alignment explanation
Indices: 32540802--32541489 Score: 1240
Period size: 160 Copynumber: 4.3 Consensus size: 160
32540792 AAAAAAAAAT
* * * * *
32540802 GAAAATAGTATATTTTTTGAAAGTAATAAAATTCGAAAGA-AAGAAAAATACGAACAAATGG-CC
1 GAAAATAGTATATATTTTGAAAGTAATTAAATCCGAAA-ATAAGAAAAATATGAATAAA-GGACC
*
32540865 AAAATAAGGG-TTTTTTTACTAAATTTATA-AAAAAACACACTAAAATAATACATTTCAAACATT
64 AAAATAAGGGTTTTTTTTACTAAATTTATATAAAAAGCACACTAAAATAATACATTTCAAACATT
32540928 ATGTACTAAAATAATATAAAATAATAAAATAC
129 ATGTACTAAAATAATATAAAATAATAAAATAC
32540960 GAAAATAGTATATATTTTGAAAGTAATTAAATCCGAAAATAAGAAAAATATGAATAAAGGACCAA
1 GAAAATAGTATATATTTTGAAAGTAATTAAATCCGAAAATAAGAAAAATATGAATAAAGGACCAA
32541025 AATAAGGGTTTTTTTTACTAAATTTATATAAAAAGCACACTAAAATAATACATTTCAAACATTAT
66 AATAAGGGTTTTTTTTACTAAATTTATATAAAAAGCACACTAAAATAATACATTTCAAACATTAT
32541090 GTACTAAAATAATATAAAATAATAAAATAC
131 GTACTAAAATAATATAAAATAATAAAATAC
32541120 GAAAATAGTATATATTTTGAAAGTAATTAAATCCGAAAATAAGAAAAATATGAATAAAGGACCAA
1 GAAAATAGTATATATTTTGAAAGTAATTAAATCCGAAAATAAGAAAAATATGAATAAAGGACCAA
32541185 AATAAGGGTTTTTTTTACTAAATTTATATAAAAAGCACACTAAAATAATACATTTCAAACATTAT
66 AATAAGGGTTTTTTTTACTAAATTTATATAAAAAGCACACTAAAATAATACATTTCAAACATTAT
32541250 GTACTAAAATAATATAAAATAATAAAATAC
131 GTACTAAAATAATATAAAATAATAAAATAC
32541280 GAAAATAGTATATATTTTGAAAGTAATTAAATCCGAAAATAAGAAAAATATGAATAAAGGACCAA
1 GAAAATAGTATATATTTTGAAAGTAATTAAATCCGAAAATAAGAAAAATATGAATAAAGGACCAA
32541345 AATAAGGGTTTTTTTTACTAAATTTATATAAAAAGCACACTAAAATAATACATTTCAAACATTAT
66 AATAAGGGTTTTTTTTACTAAATTTATATAAAAAGCACACTAAAATAATACATTTCAAACATTAT
32541410 GTACTAAAATAATATAAAATAATAAAATAC
131 GTACTAAAATAATATAAAATAATAAAATAC
* * * *
32541440 GAAAATAATATATTTTTTGAAAGTAATAAAATTCGAAAATAAGAAAAATA
1 GAAAATAGTATATATTTTGAAAGTAATTAAATCCGAAAATAAGAAAAATA
32541490 CATTGAAATT
Statistics
Matches: 516, Mismatches: 10, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
157 3 0.01
158 63 0.12
159 19 0.04
160 431 0.84
ACGTcount: A:0.54, C:0.08, G:0.09, T:0.30
Consensus pattern (160 bp):
GAAAATAGTATATATTTTGAAAGTAATTAAATCCGAAAATAAGAAAAATATGAATAAAGGACCAA
AATAAGGGTTTTTTTTACTAAATTTATATAAAAAGCACACTAAAATAATACATTTCAAACATTAT
GTACTAAAATAATATAAAATAATAAAATAC
Found at i:32543612 original size:25 final size:25
Alignment explanation
Indices: 32543584--32543638 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
32543574 TTTCTTGCGG
**
32543584 TTTTGATATTACTCTAGTTTGT-ATT
1 TTTTGATATTAC-AAAGTTTGTAATT
*
32543609 TTTTTATATTACAAAGTTTGTAATT
1 TTTTGATATTACAAAGTTTGTAATT
32543634 TTTTG
1 TTTTG
32543639 TATAAATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.24, C:0.05, G:0.11, T:0.60
Consensus pattern (25 bp):
TTTTGATATTACAAAGTTTGTAATT
Done.