Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35726063
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1821929 characters in sequence are not A, C, G, or T
File 20 of 109
Found at i:6733874 original size:135 final size:136
Alignment explanation
Indices: 6733722--6733985 Score: 343
Period size: 137 Copynumber: 1.9 Consensus size: 136
6733712 ATTAAAATAA
**
6733722 TAAAAAAAAGCTTGAAACAACATGAAAT-AAAAAATAAAAATGTGCTTAGAAGAGGAATCAAACC
1 TAAAAAAAAGCTTGAAACAACATGAAATAAAAAAATAAAAATGTGAGTAGAAGAGGAATCAAACC
* ** * * **
6733786 TAG-GACTTAAGGATGAAATCATTATTATTTAACCATCTAACCAAAAGAGCTAATGTATTAAAAA
66 -AGAGACTCAAGGACAAAACCACTAACATTTAACCATCTAACCAAAAGAGCTAATGTATTAAAAA
6733850 TATTAAT
130 TATTAAT
* * * *
6733857 TAAAAGAAAGTTTGAAACAACATGAAATAAAAAAAATACAAATGTGAGTAGGAGAGGAATCAAAC
1 TAAAAAAAAGCTTGAAACAACATGAAAT-AAAAAAATAAAAATGTGAGTAGAAGAGGAATCAAAC
* * * *
6733922 CCGAGACTCAAGGACAAAACCACTAACATTTAACCATCTAACCAAAGGAGCTGATGTTTTAAAA
65 CAGAGACTCAAGGACAAAACCACTAACATTTAACCATCTAACCAAAAGAGCTAATGTATTAAAA
6733986 GAAAACGCGT
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
135 26 0.24
136 1 0.01
137 82 0.75
ACGTcount: A:0.50, C:0.13, G:0.14, T:0.22
Consensus pattern (136 bp):
TAAAAAAAAGCTTGAAACAACATGAAATAAAAAAATAAAAATGTGAGTAGAAGAGGAATCAAACC
AGAGACTCAAGGACAAAACCACTAACATTTAACCATCTAACCAAAAGAGCTAATGTATTAAAAAT
ATTAAT
Found at i:6736011 original size:17 final size:19
Alignment explanation
Indices: 6735974--6736013 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
6735964 GTATATTAAC
*
6735974 TTATAATATATTTTAATTA
1 TTATAATATATTCTAATTA
6735993 TTATAATA-ATTCT-ATTA
1 TTATAATATATTCTAATTA
6736010 TTAT
1 TTAT
6736014 TGTTGAGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 4 0.20
19 8 0.40
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATAATATATTCTAATTA
Found at i:6738539 original size:27 final size:27
Alignment explanation
Indices: 6738501--6738563 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
6738491 TTTTAGTCCT
*
6738501 GTGCCGCCAATGGGAATGGCACCACCG
1 GTGCCGCCAATGAGAATGGCACCACCG
6738528 GTGCCGCCAATGAGAATGGCACCACCG
1 GTGCCGCCAATGAGAATGGCACCACCG
6738555 GTGCCGCCA
1 GTGCCGCCA
6738564 TTCCATTACC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.35, G:0.32, T:0.11
Consensus pattern (27 bp):
GTGCCGCCAATGAGAATGGCACCACCG
Found at i:6738651 original size:18 final size:20
Alignment explanation
Indices: 6738613--6738658 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
6738603 GGTAAATAAT
6738613 TTTTTTATATTATTTTGGTA
1 TTTTTTATATTATTTTGGTA
*
6738633 TTTTTTAT-TTCTTTT-GTA
1 TTTTTTATATTATTTTGGTA
6738651 TTATTTTA
1 TT-TTTTA
6738659 GTAAAAAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 5 0.21
19 11 0.46
20 8 0.33
ACGTcount: A:0.17, C:0.02, G:0.07, T:0.74
Consensus pattern (20 bp):
TTTTTTATATTATTTTGGTA
Found at i:6751140 original size:42 final size:42
Alignment explanation
Indices: 6751072--6752073 Score: 961
Period size: 42 Copynumber: 23.8 Consensus size: 42
6751062 TTCAGGTTTA
* * * * *
6751072 TACTTCGGTATATTCGATAATGCACTTATGTGCTAGTGTATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* *
6751114 TACTTTGGTATATCCGATGATACACTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * *
6751156 TACTTCGGTATATCTGATGATGCACTTATGTGTCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* ** * * *
6751198 TACTTCGGTATGTCTAATTATGCACTTACTTGCCATTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
** *
6751240 TACTTCGGTATATTTGATTATGCACTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
6751282 TACTTCGGTATGTCTGATGATGTATTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * **
6751324 TACTTCGATATATCCGATGATGTACTTGCGTATCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * * *
6751366 TACTTTGGTATATTCGATAATGCACTTATGTGCCAGTGTATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* *
6751408 TACTTTGGTATATTCGATGATGCACTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
6751450 TACTTCGGTATGTTCGATGATGCACTTATGTGTCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* ** *
6751492 TACTTCGGTATGTCTAATTATGCACTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * *
6751534 TACTTTGGTATGTCCGATGATGCACTTACATGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* *
6751576 TACTTCGGTATGTCCGATGATGCATTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* ** * * **
6751618 TACTTCGGTACATCTAATGATGTACTTGCGTATCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * ** * * * *
6751660 TACTTCGATATGTTTGATTATGCATTTGCTTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * *
6751702 TACTTCGGTATATTCGATGATGCACTTACCTGCTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * **
6751744 TACTTCGATATGTCCGAAGATGCACTTACGTGTTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * * *
6751786 TACTTTGGTATATTCAATGATGCACTTGCGTGCTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * * * **
6751828 TACTTCGGTATGTCTGATAATACATTTACGTGTTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
6751870 TACTTCGGTATGTCCAATGATACACTTACGTGCCAATATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
6751912 TACTTCAGTATATCTGATGATGCACTTACATGCCAGTATAAT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * ** *
6751954 TGCTTTGGT-TCATCTGATGATGCACCTTGTGTGCCA-TATAAT
1 TACTTCGGTAT-ATCCGATGATGCA-CTTACGTGCCAGTATATT
* * ** * *
6751996 TGCTTCGGCT-T-TCCCAATGATGCACTATTTGTGTCAGTATCTT
1 TACTTCGG-TATAT-CCGATGATGCACT-TACGTGCCAGTATATT
* * *
6752039 TCCTTCGGTTTATCTGATGATGCAC-TACGGTGCCA
1 TACTTCGGTATATCCGATGATGCACTTAC-GTGCCA
6752074 TATTTAGATG
Statistics
Matches: 798, Mismatches: 153, Indels: 18
0.82 0.16 0.02
Matches are distributed among these distances:
41 5 0.01
42 760 0.95
43 32 0.04
44 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.41
Consensus pattern (42 bp):
TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
Found at i:6756478 original size:212 final size:213
Alignment explanation
Indices: 6756101--6756525 Score: 843
Period size: 212 Copynumber: 2.0 Consensus size: 213
6756091 TTCAAAAAAG
6756101 AGTTTCTTTAAAATATTAAATTTTTAAACATGACAGTCTACATGTATTTTATAATAATTTATTGA
1 AGTTTCTTTAAAATATTAAATTTTTAAACATGACAGTCTACATGTATTTTATAATAATTTATTGA
6756166 AATTTTTTTATAATTTTTAAATCATTTATTAACGCCGCATATAATATATATAGCACCGTGTTAGC
66 AATTTTTTTATAATTTTTAAATCATTTATTAACGCCGCATATAATATATATAGCACCGTGTTAGC
6756231 ATGAAGTACATGTACACGGACTTCCATACAAGCTGGGAGACCAATATGATTAAAAATTAATATTT
131 ATGAAGTACATGTACACGGACTTCCATACAAGCTGGGAGACCAATATGATTAAAAATTAATATTT
6756296 TAATCAGAATTAAATAGA
196 TAATCAGAATTAAATAGA
6756314 AGTTTCTTT-AAATATTAAATTTTTAAACATGACAGTCTACATGTATTTTATAATAATTTATTGA
1 AGTTTCTTTAAAATATTAAATTTTTAAACATGACAGTCTACATGTATTTTATAATAATTTATTGA
6756378 AATTTTTTTATAATTTTTAAATCATTTATTAACGCCGCATATAATATATATAGCACCGTGTTAGC
66 AATTTTTTTATAATTTTTAAATCATTTATTAACGCCGCATATAATATATATAGCACCGTGTTAGC
6756443 ATGAAGTACATGTACACGGACTTCCATACAAGCTGGGAGACCAATATGATTAAAAATTAATATTT
131 ATGAAGTACATGTACACGGACTTCCATACAAGCTGGGAGACCAATATGATTAAAAATTAATATTT
6756508 TAATCAGAATTAAATAGA
196 TAATCAGAATTAAATAGA
6756526 TAAATTAACT
Statistics
Matches: 212, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
212 203 0.96
213 9 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (213 bp):
AGTTTCTTTAAAATATTAAATTTTTAAACATGACAGTCTACATGTATTTTATAATAATTTATTGA
AATTTTTTTATAATTTTTAAATCATTTATTAACGCCGCATATAATATATATAGCACCGTGTTAGC
ATGAAGTACATGTACACGGACTTCCATACAAGCTGGGAGACCAATATGATTAAAAATTAATATTT
TAATCAGAATTAAATAGA
Found at i:6758524 original size:6 final size:6
Alignment explanation
Indices: 6758508--6758581 Score: 94
Period size: 6 Copynumber: 12.2 Consensus size: 6
6758498 AACTAGAGAT
*
6758508 GGAATTG GGAATG GGAATG GGAATG GGAATG GGAATG GGAATG GAAATG
1 GGAA-TG GGAATG GGAATG GGAATG GGAATG GGAATG GGAATG GGAATG
* * * *
6758557 GAAATG GAAATG GAAATG GAAATG G
1 GGAATG GGAATG GGAATG GGAATG G
6758582 AAGTGTTCGA
Statistics
Matches: 66, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
6 62 0.94
7 4 0.06
ACGTcount: A:0.39, C:0.00, G:0.43, T:0.18
Consensus pattern (6 bp):
GGAATG
Found at i:6764934 original size:21 final size:20
Alignment explanation
Indices: 6764901--6764943 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
6764891 GTCCCTTGTA
6764901 ACTCAAAAATTTACAGTTTTG
1 ACTCAAAAATTTAC-GTTTTG
* *
6764922 ACTCAGAATTTTACGTTTTG
1 ACTCAAAAATTTACGTTTTG
6764942 AC
1 AC
6764944 CAGTTTAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.40
Consensus pattern (20 bp):
ACTCAAAAATTTACGTTTTG
Found at i:6767787 original size:37 final size:38
Alignment explanation
Indices: 6767720--6767794 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 38
6767710 GCTCCTATTT
**
6767720 AAAAGAAATAAGGATGATGTTGAATCACAGTTTCATAC
1 AAAAGAAATAAGGATGATCATGAATCACAGTTTCATAC
*
6767758 AAAA-AAATAAGGATGA-CATGAAATTACAGTTTCATAC
1 AAAAGAAATAAGGATGATCATG-AATCACAGTTTCATAC
6767795 CGTCTCTTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 2 0.06
37 27 0.82
38 4 0.12
ACGTcount: A:0.48, C:0.11, G:0.16, T:0.25
Consensus pattern (38 bp):
AAAAGAAATAAGGATGATCATGAATCACAGTTTCATAC
Found at i:6804102 original size:89 final size:89
Alignment explanation
Indices: 6803951--6804889 Score: 1398
Period size: 89 Copynumber: 10.6 Consensus size: 89
6803941 GAGCAGGTTG
* * * *
6803951 AAAGATAACAGATCTTGCCTTCCCATATTGGTGGCGAAGCAGATCGAAAAAAGCAGATCTTGTCT
1 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
*
6804016 TCATGTACTGGCGTGAAGTAGACC
66 TCATGTACTGGCGTGAAGTAGATC
* * *
6804040 AAAGATACCAGATCTTATCTTCCCATACTGGTGGCGAAGTAGATCGGAGAAAGCAGATCTTGTCT
1 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
* *
6804105 TCATGTACTGGCGTGAGGTAGACC
66 TCATGTACTGGCGTGAAGTAGATC
* * * * *
6804129 AAATATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAAAAAGTAGATTTTGTCT
1 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
6804194 TCATGTACTGGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* *
6804218 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC-AGAGAAAGCAGATCTTATC
1 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGA-AGAAAGCAGATCTTGTC
* *
6804282 TTCATGTACTGGCATGGAGTAGATC
65 TTCATGTACTGGCGTGAAGTAGATC
* * * *
6804307 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGCAGATCTAAGAAAGCAGATATTGTCT
1 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
*
6804372 TCATGTACTGGCGTGAAGTAGACC
66 TCATGTACTGGCGTGAAGTAGATC
* *
6804396 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGGAGAAAGCAGATCTTGTCT
1 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
* *
6804461 TCATGTATTGGCGTGGAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* * * *
6804485 AAAGATAACAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATTGAAGAAAGCAGATCTTGTCT
1 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
* *
6804550 TTATGTACTAGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* *
6804574 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGGAGAAAGCAGATCTTGTCT
1 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
* *
6804639 TCATGTACTGGCATGGAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* * *
6804663 AAAGATAACAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
* *
6804728 TCATGTACTGGCGTGGAGTAGATA
66 TCATGTACTGGCGTGAAGTAGATC
* * * *
6804752 AAAGATAACAGATCTTG-CTTTCCTATACTGATGGTGAAGC-GATCGAAGAAAGCAGATCTTGTC
1 AAAGATACCAGATCTTGTC-TTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTC
*
6804815 TTCATGTACTGGCGTGAAGTAGATA
65 TTCATGTACTGGCGTGAAGTAGATC
*
6804840 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGTGAAGCAGATCGAAGA
1 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGA
6804890 TGGCGGATTT
Statistics
Matches: 772, Mismatches: 73, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
88 84 0.11
89 687 0.89
90 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (89 bp):
AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCT
TCATGTACTGGCGTGAAGTAGATC
Found at i:6810086 original size:124 final size:124
Alignment explanation
Indices: 6809915--6810149 Score: 355
Period size: 124 Copynumber: 1.9 Consensus size: 124
6809905 TGATTCTCAA
* *
6809915 GTCATTTCCATACTTAGTAAGAAACTGCATTAATTTCCGAATGTAACTCATTTCTCTAACTTTAT
1 GTCATTTCCATACTTAGTAAGAAACTGCATTAATTTCCAAATGTAACTAATTTCTCTAACTTTAT
* *
6809980 CATTTCTATCTATTTCTGGTCATTTGATTCTAAATGCGATTCATTTCTTGTTTCAAAAG
66 CATTTCTATCTATTTCTAGTCATTTGATTCTAAATGCAATTCATTTCTTGTTTCAAAAG
* * * *
6810039 GTCATTTCCATACTTAGTGAGAAATTG-TTTTATTTCTCAAATGTAACTAATTTCTCTAACTTTA
1 GTCATTTCCATACTTAGTAAGAAACTGCATTAATTTC-CAAATGTAACTAATTTCTCTAACTTTA
* * *
6810103 TCATTTGTATCTATTTTTAGTCATTTGATTCTAAATGTAATTCATTT
65 TCATTTCTATCTATTTCTAGTCATTTGATTCTAAATGCAATTCATTT
6810150 TTTTTTTTGT
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
123 7 0.07
124 92 0.93
ACGTcount: A:0.28, C:0.16, G:0.10, T:0.46
Consensus pattern (124 bp):
GTCATTTCCATACTTAGTAAGAAACTGCATTAATTTCCAAATGTAACTAATTTCTCTAACTTTAT
CATTTCTATCTATTTCTAGTCATTTGATTCTAAATGCAATTCATTTCTTGTTTCAAAAG
Found at i:6811561 original size:180 final size:180
Alignment explanation
Indices: 6811257--6811622 Score: 624
Period size: 180 Copynumber: 2.0 Consensus size: 180
6811247 TTTTAGGACT
* * * *
6811257 CAAAATATGTTAGATTATCATTCAAAAACTTCATATAATGCATGAGTATATCTATCTAGGAAAGA
1 CAAAATATGTTAGATTACCATTCAAAAAATTCATATAATGCATGAGTATATCCATCTAAGAAAGA
6811322 TCATCTCAAGATACAAAATGATATCAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
66 TCATCTCAAGATACAAAATGATATCAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
*
6811387 ACAACAAAAATCCATATGATCCTAAATCTATGTACAAGCCATTCTATTAC
131 ACAACAAAAATCCATATGATCCTAAATCTATGTACAAGCCACTCTATTAC
*
6811437 CGAAATATGTTAGATTACCATTCAAAAAATTCATATAATGCATGAGTATATCCATCTAAGAAAGA
1 CAAAATATGTTAGATTACCATTCAAAAAATTCATATAATGCATGAGTATATCCATCTAAGAAAGA
** * *
6811502 TCATCTTGAGGTACAAAATGATATTAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
66 TCATCTCAAGATACAAAATGATATCAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
* *
6811567 ACAACAAAAATCCATATGGTTCTAAATCTATGTACAAGCCACTCTATTAC
131 ACAACAAAAATCCATATGATCCTAAATCTATGTACAAGCCACTCTATTAC
6811617 CAAAAT
1 CAAAAT
6811623 CTAAGTTCCA
Statistics
Matches: 173, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
180 173 1.00
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (180 bp):
CAAAATATGTTAGATTACCATTCAAAAAATTCATATAATGCATGAGTATATCCATCTAAGAAAGA
TCATCTCAAGATACAAAATGATATCAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
ACAACAAAAATCCATATGATCCTAAATCTATGTACAAGCCACTCTATTAC
Found at i:6812397 original size:44 final size:44
Alignment explanation
Indices: 6812329--6812534 Score: 171
Period size: 44 Copynumber: 4.7 Consensus size: 44
6812319 AATCTTATCC
* * *
6812329 CCCTAAAGTTGCAGTAGAGCAGATTAAAGCCAC-AAGTCGGATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTAAAGACACTAA-TCGGATCT
* * * **
6812373 CCCTGAAGTTGCAGTGGGGCAGATTGAAGATACTAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTAAAGACACTAATCGGATCT
* * * * ***
6812417 CCCTGAAGTTGCAGTGTAGCAAATTGAAGATACTAATTTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTAAAGACACTAATCGGATCT
* * * * ** *
6812461 CCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTCATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTAAAGACA-CTAATCGGATCT
* *
6812506 CCCTGAAGTTGCAGTGGAACCGATTAAAG
1 CCCTGAAGTTGCAGTGGAGCAGATTAAAG
6812535 CTACAAGTCA
Statistics
Matches: 137, Mismatches: 23, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
44 102 0.74
45 35 0.26
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTGGAGCAGATTAAAGACACTAATCGGATCT
Found at i:6812426 original size:88 final size:88
Alignment explanation
Indices: 6812319--6812543 Score: 256
Period size: 88 Copynumber: 2.5 Consensus size: 88
6812309 CATCGTGGCG
* * *
6812319 AATCTTATCCCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCACAAGTCGGATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGT-GAGCAGATTAAAGCTACAAGTCGGATCTCCCTGAAGTTG
* * *
6812384 CAGTGGGGCAGATTGAAGATA-CT
65 CAGTAGAGCAGATTGAAGATAGCA
* * * ***
6812407 AATCTTATCTCCCTGAAGTTGCAGTGTAGCAAATTGAAGATACTAA-TTTTATCTCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTG-AGCAGATTAAAGCTAC-AAGTCGGATCTCCCTGAAGTT
6812471 GCAGTAGAGCAGATTGAAGATAGCA
64 GCAGTAGAGCAGATTGAAGATAGCA
* * * *
6812496 AATCTCATTTCCCTGAAGTTGCAGTGGAACCGATTAAAGCTACAAGTC
1 AATCTTATCTCCCTGAAGTTGCAGT-GAGCAGATTAAAGCTACAAGTC
6812544 ACGAATCCTA
Statistics
Matches: 112, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
87 1 0.01
88 72 0.64
89 38 0.34
90 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTGCAGTGAGCAGATTAAAGCTACAAGTCGGATCTCCCTGAAGTTGC
AGTAGAGCAGATTGAAGATAGCA
Found at i:6812728 original size:146 final size:147
Alignment explanation
Indices: 6812455--6812822 Score: 517
Period size: 146 Copynumber: 2.5 Consensus size: 147
6812445 GATACTAATT
*
6812455 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTCATTTCCCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTCATTTCCCTGAAGTTGCAG
* ** * * ** *
6812520 TGGAACCGATTAAAGCTACAAGTCACGAATCCTATACCTTTAAAGTTGTAGTAGGTCGGATTAAA
66 TGGAACAGATTAAAGCTACAAGTCAAAAATCCTATACCTCTAAAGTTGTAGGAGAACAGATTAAA
*
6812585 TCTACCA-TGACAAATC
131 GCTACCAGTGACAAATC
* * *
6812601 TTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAGATAGCAAATCTCATTTCCTTGAAGTTGTAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTCATTTCCCTGAAGTTGCAG
*
6812666 TGGAACAGATTAAAGCTACAAGTCAAAAATCTTATACCTCTAAAGTTGTAGCGA-AACAGATTAA
66 TGGAACAGATTAAAGCTACAAGTCAAAAATCCTATACCTCTAAAGTTGTAG-GAGAACAGATTAA
* *
6812730 AGCTACGAGTTACAAATC
130 AGCTACCAGTGACAAATC
* * * * *
6812748 TTATCTCCCTGAAGTTTCAGTGGAGCAGATTGTAGAT-GCGAGTCTAATTTCCCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTCATTTCCCTGAAGTTGCAG
6812812 TGGAACAGATT
66 TGGAACAGATT
6812823 GTAGATGCGA
Statistics
Matches: 196, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
146 153 0.78
147 43 0.22
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (147 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTCATTTCCCTGAAGTTGCAG
TGGAACAGATTAAAGCTACAAGTCAAAAATCCTATACCTCTAAAGTTGTAGGAGAACAGATTAAA
GCTACCAGTGACAAATC
Found at i:6812777 original size:51 final size:50
Alignment explanation
Indices: 6812494--6812778 Score: 176
Period size: 51 Copynumber: 5.7 Consensus size: 50
6812484 TTGAAGATAG
* * * *
6812494 CAAATCTCATTTCCCTGAAGTTGCAGTGGAACCGATTAAAGCTACAAGTCA
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGT-A
* * ** * * * * *
6812545 CGAATCCTATAC-CTTTAAAGTTGTAGTAGG-TCGGATTAAATCTACCA-TGA
1 CAAATCTTAT-CTCCCTGAAGTTGTAGT-GGAACAGATTAAAGCTACAAGT-A
* * * * *
6812595 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAG--A-TAG--
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTA
* * *
6812640 CAAATCTCATTTCCTTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTCA
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGT-A
* * * * * *
6812691 AAAATCTTATAC-CTCTAAAGTTGTAGCGAAACAGATTAAAGCTACGAGTTA
1 CAAATCTTAT-CTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAG-TA
*
6812742 CAAATCTTATCTCCCTGAAGTT-TCAGTGGAGCAGATT
1 CAAATCTTATCTCCCTGAAGTTGT-AGTGGAACAGATT
6812779 GTAGATGCGA
Statistics
Matches: 171, Mismatches: 48, Indels: 30
0.69 0.19 0.12
Matches are distributed among these distances:
45 34 0.20
47 2 0.01
48 3 0.02
49 3 0.02
50 29 0.17
51 97 0.57
52 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (50 bp):
CAAATCTTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTA
Found at i:6812849 original size:44 final size:44
Alignment explanation
Indices: 6812750--6812859 Score: 157
Period size: 44 Copynumber: 2.5 Consensus size: 44
6812740 TACAAATCTT
* *
6812750 ATCTCCCTGAAGTTTCAGTGGAGCAGATTGTAGATGCGAGTCTA
1 ATCTCCCTGAAGTTACAGTGGAACAGATTGTAGATGCGAGTCTA
* *
6812794 ATTTCCCTGAAGTTGCAGTGGAACAGATTGTAGATGCGAGTCTA
1 ATCTCCCTGAAGTTACAGTGGAACAGATTGTAGATGCGAGTCTA
* **
6812838 GTCTCGTTGAAGTTACAGTGGA
1 ATCTCCCTGAAGTTACAGTGGA
6812860 GTAGATCGAA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (44 bp):
ATCTCCCTGAAGTTACAGTGGAACAGATTGTAGATGCGAGTCTA
Found at i:6815228 original size:21 final size:21
Alignment explanation
Indices: 6815204--6815243 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6815194 CGAATATCCT
* *
6815204 TTTAAAATCAAAATAATAAGA
1 TTTAAAATAAAAAAAATAAGA
6815225 TTTAAAATAAAAAAAATAA
1 TTTAAAATAAAAAAAATAA
6815244 AGGCAGGCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (21 bp):
TTTAAAATAAAAAAAATAAGA
Found at i:6815885 original size:22 final size:23
Alignment explanation
Indices: 6815860--6815902 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
6815850 AGAAATATAC
*
6815860 ATGGGC-AAAGTTAAAATTTTGG
1 ATGGGCTAAAATTAAAATTTTGG
*
6815882 ATGGGCTAAAATTAAATTTTT
1 ATGGGCTAAAATTAAAATTTT
6815903 ATCAAAGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (23 bp):
ATGGGCTAAAATTAAAATTTTGG
Found at i:6826270 original size:84 final size:85
Alignment explanation
Indices: 6826129--6826300 Score: 337
Period size: 84 Copynumber: 2.0 Consensus size: 85
6826119 ATCCTAAACA
6826129 ATATATATTTAACAATTCCATTTGAATTCATTCTTATTGCTATTTAATAATTAAAAAATAATTTT
1 ATATATATTTAACAATTCCATTTGAATTCATTCTTATTGCTATTTAATAATTAAAAAATAATTTT
6826194 ATTTTAA-TTAATTATAGAT
66 ATTTTAATTTAATTATAGAT
6826213 ATATATATTTAACAATTCCATTTGAATTCATTCTTATTGCTATTTAATAATTAAAAAATAATTTT
1 ATATATATTTAACAATTCCATTTGAATTCATTCTTATTGCTATTTAATAATTAAAAAATAATTTT
6826278 ATTTTAATTTAATTATAGAT
66 ATTTTAATTTAATTATAGAT
6826298 ATA
1 ATA
6826301 ATAAAGCATT
Statistics
Matches: 87, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
84 72 0.83
85 15 0.17
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.49
Consensus pattern (85 bp):
ATATATATTTAACAATTCCATTTGAATTCATTCTTATTGCTATTTAATAATTAAAAAATAATTTT
ATTTTAATTTAATTATAGAT
Found at i:6827970 original size:21 final size:21
Alignment explanation
Indices: 6827946--6827987 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6827936 TTAGGGATAT
6827946 AAATAAT-TAATTCAAGTATTA
1 AAATAATATAA-TCAAGTATTA
*
6827967 AAATAATATAATCATGTATTA
1 AAATAATATAATCAAGTATTA
6827988 TTATATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (21 bp):
AAATAATATAATCAAGTATTA
Found at i:6830024 original size:47 final size:47
Alignment explanation
Indices: 6829945--6830068 Score: 169
Period size: 47 Copynumber: 2.6 Consensus size: 47
6829935 AGTTGACTGT
* * *
6829945 TCATTTGCTCGACCT-GTGGTTTATCTACAATGTATTCTAGTCGGCAG
1 TCATATGCTCGA-CTAGTGGTTTATCCACAATGTATTCTAATCGGCAG
* *
6829992 TCATATGCTCGACTAGTGGTTTATCCATAATGTATTCTAATTGGCAG
1 TCATATGCTCGACTAGTGGTTTATCCACAATGTATTCTAATCGGCAG
* *
6830039 TCATCTGCTCAACTAGTGGTTTATCCACAA
1 TCATATGCTCGACTAGTGGTTTATCCACAA
6830069 CATATTACCA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 2 0.03
47 66 0.97
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (47 bp):
TCATATGCTCGACTAGTGGTTTATCCACAATGTATTCTAATCGGCAG
Found at i:6830189 original size:19 final size:20
Alignment explanation
Indices: 6830162--6830223 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
6830152 CGATATAGTA
6830162 AATAATTATTAGGAGTAATT
1 AATAATTATTAGGAGTAATT
* *
6830182 AA-AATTATGA-GACTGATAATA
1 AATAATTATTAGGA--G-TAATT
6830203 AATAATTATTAGGAGTAATT
1 AATAATTATTAGGAGTAATT
6830223 A
1 A
6830224 GGAAAAAATG
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
18 2 0.06
19 7 0.21
20 8 0.24
21 7 0.21
22 7 0.21
23 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.15, T:0.35
Consensus pattern (20 bp):
AATAATTATTAGGAGTAATT
Found at i:6830385 original size:18 final size:17
Alignment explanation
Indices: 6830364--6830404 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
6830354 TTATTTGTTT
6830364 TAATTATATTATTAATGA
1 TAATTATATTA-TAATGA
*
6830382 TAATTAAATTATAATGA
1 TAATTATATTATAATGA
6830399 T-ATTAT
1 TAATTAT
6830405 CTAATTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 4 0.19
17 7 0.33
18 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (17 bp):
TAATTATATTATAATGA
Found at i:6831593 original size:39 final size:39
Alignment explanation
Indices: 6831539--6831644 Score: 113
Period size: 45 Copynumber: 2.6 Consensus size: 39
6831529 GGCATTTATA
* * *
6831539 TGTCGACTATTGTTACTGTTACCGATTCGACACTTTGTG
1 TGTCGAATATTGTTACTGTTACAGATTCAACACTTTGTG
6831578 TGTCGAATATTGTTACCGTTACTGTTACAGATTCAACACTTTGTG
1 TGTCGAATA---TT---GTTACTGTTACAGATTCAACACTTTGTG
* *
6831623 TGTTGAATATTGTTATTGTTAC
1 TGTCGAATATTGTTACTGTTAC
6831645 TGCTACTGTT
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
39 18 0.32
42 4 0.07
45 34 0.61
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.43
Consensus pattern (39 bp):
TGTCGAATATTGTTACTGTTACAGATTCAACACTTTGTG
Found at i:6831640 original size:51 final size:45
Alignment explanation
Indices: 6831550--6831646 Score: 149
Period size: 45 Copynumber: 2.2 Consensus size: 45
6831540 GTCGACTATT
* *
6831550 GTTACTGTTACCGATTCGACACTTTGTGTGTCGAATATTGTTACC
1 GTTACTGTTACAGATTCAACACTTTGTGTGTCGAATATTGTTACC
* **
6831595 GTTACTGTTACAGATTCAACACTTTGTGTGTTGAATATTGTTATT
1 GTTACTGTTACAGATTCAACACTTTGTGTGTCGAATATTGTTACC
6831640 GTTACTG
1 GTTACTG
6831647 CTACTGTTAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (45 bp):
GTTACTGTTACAGATTCAACACTTTGTGTGTCGAATATTGTTACC
Found at i:6852517 original size:12 final size:12
Alignment explanation
Indices: 6852502--6852528 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
6852492 AAAATTTTGA
6852502 AAAAATATATAT
1 AAAAATATATAT
6852514 AAAAATATATAT
1 AAAAATATATAT
6852526 AAA
1 AAA
6852529 TAAACACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
AAAAATATATAT
Found at i:6871839 original size:45 final size:45
Alignment explanation
Indices: 6871784--6872153 Score: 354
Period size: 45 Copynumber: 8.3 Consensus size: 45
6871774 GTACTGGCGT
* *
6871784 GAAGTAGATCAGAGATACCAGATCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGTGGC
* * *** * *
6871829 GAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACTGG-CGT
1 GAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGTGGC
* *
6871873 GAAGTAGATCAGAGATACCAGATCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGTGGC
* * *** * *
6871918 GAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACTGG-CGT
1 GAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGTGGC
* *
6871962 GAAGTAGATCAGAGATACCAGATCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGTGGC
* * *** * *
6872007 GAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACTGG-CGT
1 GAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGTGGC
* *
6872051 GAAGTAGATCAAAGAAA-CAGATCTTGTCTCCCCATACTGGTGGT
1 GAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGTGGC
* * * * * *** * *
6872095 GGAGTAGGTCGAAGAAAACAGATCGTGTCTTCATGTACTGG-CGT
1 GAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGTGGC
6872139 GAAGTAGATCAAAGA
1 GAAGTAGATCAAAGA
6872154 TAGTAGGTCC
Statistics
Matches: 258, Mismatches: 63, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
43 19 0.07
44 117 0.45
45 122 0.47
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (45 bp):
GAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGTGGC
Found at i:6871925 original size:89 final size:89
Alignment explanation
Indices: 6871774--6872187 Score: 659
Period size: 89 Copynumber: 4.7 Consensus size: 89
6871764 TGATCATGAC
6871774 GTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATC
1 GTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATC
6871839 AAAGAAAGCAGATCTTGTCTTCAT
66 AAAGAAAGCAGATCTTGTCTTCAT
6871863 GTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATC
1 GTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATC
6871928 AAAGAAAGCAGATCTTGTCTTCAT
66 AAAGAAAGCAGATCTTGTCTTCAT
6871952 GTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATC
1 GTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATC
6872017 AAAGAAAGCAGATCTTGTCTTCAT
66 AAAGAAAGCAGATCTTGTCTTCAT
* * * * * * *
6872041 GTACTGGCGTGAAGTAGATCAAAGA-AACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGGTC
1 GTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATC
* * *
6872105 GAAGAAAACAGATCGTGTCTTCAT
66 AAAGAAAGCAGATCTTGTCTTCAT
* ** * * * * *
6872129 GTACTGGCGTGAAGTAGATCAAAGATAGTAGGTCCTGTCTTCCTATATTGGTAGCGAAG
1 GTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAG
6872188 TGGATCGAAT
Statistics
Matches: 304, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
88 79 0.26
89 225 0.74
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (89 bp):
GTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATC
AAAGAAAGCAGATCTTGTCTTCAT
Found at i:6893780 original size:14 final size:14
Alignment explanation
Indices: 6893761--6893811 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 14
6893751 TTGAACTGTA
6893761 AAATATTTATTATT
1 AAATATTTATTATT
*
6893775 AAATATTTATAAATT
1 AAATATTTAT-TATT
6893790 GCAACATATTT-TTATT
1 --AA-ATATTTATTATT
6893806 AAATAT
1 AAATAT
6893812 AAACATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
13 4 0.13
14 12 0.39
15 3 0.10
16 3 0.10
17 3 0.10
18 6 0.19
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (14 bp):
AAATATTTATTATT
Found at i:6893781 original size:31 final size:31
Alignment explanation
Indices: 6893746--6893811 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
6893736 TGAAATATTC
* *
6893746 ATATTT-TGAACTGTAAAATATTTATTATTAA
1 ATATTTATAAACTGCAAAATATTT-TTATTAA
* *
6893777 ATATTTATAAATTGCAACATATTTTTATTAA
1 ATATTTATAAACTGCAAAATATTTTTATTAA
6893808 ATAT
1 ATAT
6893812 AAACATAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 17 0.57
32 13 0.43
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.48
Consensus pattern (31 bp):
ATATTTATAAACTGCAAAATATTTTTATTAA
Found at i:6900625 original size:19 final size:19
Alignment explanation
Indices: 6900596--6900649 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
6900586 AATCTTCAAG
6900596 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
6900615 GGTATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
6900634 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
6900650 AGATATGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:6900675 original size:22 final size:21
Alignment explanation
Indices: 6900596--6900675 Score: 78
Period size: 19 Copynumber: 3.9 Consensus size: 21
6900586 AATCTTCAAG
*
6900596 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
6900615 GGTATGTAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
6900634 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
6900656 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
6900676 TTAATTTGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
19 28 0.55
22 12 0.24
23 11 0.22
ACGTcount: A:0.35, C:0.07, G:0.19, T:0.39
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:6918975 original size:46 final size:46
Alignment explanation
Indices: 6918908--6919047 Score: 235
Period size: 46 Copynumber: 3.0 Consensus size: 46
6918898 ACAATGCTAT
* * *
6918908 AACTCAGTATAGTTTCCTTCACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
6918954 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* *
6919000 AACTCAGTATGGCTTTATTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
6919046 AA
1 AA
6919048 TTTTCCATGG
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 89 1.00
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.34
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:6920050 original size:27 final size:25
Alignment explanation
Indices: 6919990--6920050 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 25
6919980 CCCGGCCCAT
* *
6919990 TTTTAAAATAAACATTAAAAAATTA
1 TTTTAAAATAAAAATAAAAAAATTA
6920015 TTTTAAAAATAAAAAAATAAAAAAATTA
1 TTTT-AAAAT--AAAAATAAAAAAATTA
6920043 TTTTAAAA
1 TTTTAAAA
6920051 GTATTTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 4 0.13
26 5 0.16
27 4 0.13
28 18 0.58
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (25 bp):
TTTTAAAATAAAAATAAAAAAATTA
Found at i:6920174 original size:26 final size:27
Alignment explanation
Indices: 6920112--6920174 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
6920102 GGCCGGGCCG
*
6920112 GGCCCGGGCCAAAAAAGTGGTGCCCGA
1 GGCCCAGGCCAAAAAAGTGGTGCCCGA
6920139 GGCCCAGGCCAAAAAAGTGGTGCCCGA
1 GGCCCAGGCCAAAAAAGTGGTGCCCGA
6920166 GGCCC-GGCC
1 GGCCCAGGCC
6920175 TGTTTTTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
26 4 0.11
27 31 0.89
ACGTcount: A:0.24, C:0.33, G:0.37, T:0.06
Consensus pattern (27 bp):
GGCCCAGGCCAAAAAAGTGGTGCCCGA
Found at i:6927246 original size:23 final size:23
Alignment explanation
Indices: 6927220--6927269 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
6927210 ATAAGTGCCA
*
6927220 CACTGATATGTAGCCGAAGCTAC
1 CACTGATACGTAGCCGAAGCTAC
6927243 CACTGATACGTAGCCGAAGCTAC
1 CACTGATACGTAGCCGAAGCTAC
6927266 CACT
1 CACT
6927270 NNNNNNNNNN
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (23 bp):
CACTGATACGTAGCCGAAGCTAC
Found at i:6929903 original size:12 final size:12
Alignment explanation
Indices: 6929888--6929916 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
6929878 TTACTGTTTT
6929888 ATTTAATATTTC
1 ATTTAATATTTC
6929900 ATTTAATATTTC
1 ATTTAATATTTC
6929912 ATTTA
1 ATTTA
6929917 TTTATTTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTTAATATTTC
Found at i:6932332 original size:21 final size:21
Alignment explanation
Indices: 6932306--6932365 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
6932296 TAGATGGATA
6932306 AGCTCTTATGAGCTTCTGTTC
1 AGCTCTTATGAGCTTCTGTTC
6932327 AGCTCTTATGAGCTTCTGTTC
1 AGCTCTTATGAGCTTCTGTTC
*
6932348 AGCT-TT-CGAGCTTCTGTT
1 AGCTCTTATGAGCTTCTGTT
6932366 GGCATATTCG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 11 0.29
20 2 0.05
21 25 0.66
ACGTcount: A:0.13, C:0.23, G:0.20, T:0.43
Consensus pattern (21 bp):
AGCTCTTATGAGCTTCTGTTC
Found at i:6935532 original size:15 final size:15
Alignment explanation
Indices: 6935512--6935541 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6935502 GAGTTGAAAG
6935512 TGAAGAAGAAGATGA
1 TGAAGAAGAAGATGA
*
6935527 TGAAGATGAAGATGA
1 TGAAGAAGAAGATGA
6935542 AGATAATCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (15 bp):
TGAAGAAGAAGATGA
Found at i:6935971 original size:43 final size:44
Alignment explanation
Indices: 6935864--6935985 Score: 140
Period size: 43 Copynumber: 2.8 Consensus size: 44
6935854 ATGGTGTTTT
* * ** *
6935864 TAGCGGCGTTTGTAATCAAAGCATCGCTAAAGGTCTTTGATCTA
1 TAGCGGCGTTTGTAGTAAAAGCGCCGCTAAAGGTCTTTGAGCTA
* * *
6935908 TAGCGGTGTTTGTGGTAAAAGTGCCGCTAAAGGTC-TTGAGCTA
1 TAGCGGCGTTTGTAGTAAAAGCGCCGCTAAAGGTCTTTGAGCTA
*
6935951 TAGCGGCGTTTGTTAG-AAAAGCGTCGCTAAAGGTC
1 TAGCGGCGTTTG-TAGTAAAAGCGCCGCTAAAGGTC
6935986 ATGACCTTGG
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
43 35 0.54
44 30 0.46
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (44 bp):
TAGCGGCGTTTGTAGTAAAAGCGCCGCTAAAGGTCTTTGAGCTA
Found at i:6938015 original size:93 final size:93
Alignment explanation
Indices: 6937850--6938034 Score: 354
Period size: 93 Copynumber: 2.0 Consensus size: 93
6937840 TATTGTTGTT
6937850 CTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAACAATTCAA
1 CTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAACAATTCAA
6937915 CCATTTTTTATAAATGTAGTTTAACATA
66 CCATTTTTTATAAATGTAGTTTAACATA
*
6937943 CTTTCTAATTTGGTTATTATTTTATATATTCAAAAACTTATAATTAT-AAAATAAAACAATTCAA
1 CTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAACAATTCAA
6938007 CCATTTTTTATAAATGTAGTTTAACATA
66 CCATTTTTTATAAATGTAGTTTAACATA
6938035 TTTTTTTTTT
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
92 45 0.49
93 46 0.51
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (93 bp):
CTTTCTAATTTAGTTATTATTTTATATATTCAAAAACTTATAATTATAAAAATAAAACAATTCAA
CCATTTTTTATAAATGTAGTTTAACATA
Found at i:6938605 original size:5 final size:5
Alignment explanation
Indices: 6938595--6938620 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
6938585 CTCGAAAATT
6938595 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
6938621 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:6940779 original size:13 final size:13
Alignment explanation
Indices: 6940761--6940788 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6940751 TCCAAACCTA
6940761 TACATACCAAATT
1 TACATACCAAATT
6940774 TACATACCAAATT
1 TACATACCAAATT
6940787 TA
1 TA
6940789 ACAGCACTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.32
Consensus pattern (13 bp):
TACATACCAAATT
Found at i:6940885 original size:24 final size:22
Alignment explanation
Indices: 6940779--6941083 Score: 108
Period size: 24 Copynumber: 13.2 Consensus size: 22
6940769 AAATTTACAT
*
6940779 ACCAAATTTAACAGCACTTTTAC
1 ACCAAATTTAACAGCA-TTATAC
6940802 ACCATAAAATTTAACAGCATATATAC
1 ACC---AAATTTAACAGCAT-TATAC
** *
6940828 AGTAAA--TAGGCAGCA-TATAC
1 ACCAAATTTA-ACAGCATTATAC
*
6940848 ATACCAAATTTAACAGCACTTTTAC
1 --ACCAAATTTAACAGCA-TTATAC
*
6940873 ACCAAAATTTAACAACATATATAC
1 ACC-AAATTTAACAGCAT-TATAC
* *
6940897 AGCAAA--TAGGCAGCA-TATAC
1 ACCAAATTTA-ACAGCATTATAC
* *
6940917 ATACCAAATTTAACAACACTTTTAC
1 --ACCAAATTTAACAGCA-TTATAC
6940942 ACCAAAATTTAACAGCATATATAC
1 ACC-AAATTTAACAGCAT-TATAC
* ** *
6940966 AACAAA-TTGGCAACA-TATAC
1 ACCAAATTTAACAGCATTATAC
* * *
6940986 ATACCAAATTGAGCAGCATTTTTAC
1 --ACCAAATTTAACAGCA-TTATAC
*
6941011 ACCAAAATTTATCAGCATATATAC
1 ACC-AAATTTAACAGCAT-TATAC
* ***
6941035 AACAAA-TGGGCAGCA-TATAC
1 ACCAAATTTAACAGCATTATAC
*
6941055 ATACCAAATTTAACAGCACTTTTAC
1 --ACCAAATTTAACAGCA-TTATAC
6941080 ACCA
1 ACCA
6941084 TAAGATTATA
Statistics
Matches: 208, Mismatches: 40, Indels: 68
0.66 0.13 0.22
Matches are distributed among these distances:
20 20 0.10
21 4 0.02
22 40 0.19
23 52 0.25
24 57 0.27
25 17 0.08
26 18 0.09
ACGTcount: A:0.45, C:0.22, G:0.08, T:0.26
Consensus pattern (22 bp):
ACCAAATTTAACAGCATTATAC
Found at i:6940914 original size:69 final size:69
Alignment explanation
Indices: 6940774--6941083 Score: 494
Period size: 69 Copynumber: 4.5 Consensus size: 69
6940764 ATACCAAATT
**
6940774 TACATACCAAATTTAACAGCACTTTTACACCATAAAATTTAACAGCATATATACAGTAAATAGGC
1 TACATACCAAATTTAACAGCACTTTTACACC--AAAATTTAACAGCATATATACAACAAATAGGC
6940839 AGCATA
64 AGCATA
* *
6940845 TACATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAACATATATACAGCAAATAGGCAG
1 TACATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAGCATATATACAACAAATAGGCAG
6940910 CATA
66 CATA
* * *
6940914 TACATACCAAATTTAACAACACTTTTACACCAAAATTTAACAGCATATATACAACAAATTGGCAA
1 TACATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAGCATATATACAACAAATAGGCAG
6940979 CATA
66 CATA
* * * * *
6940983 TACATACCAAATTGAGCAGCATTTTTACACCAAAATTTATCAGCATATATACAACAAATGGGCAG
1 TACATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAGCATATATACAACAAATAGGCAG
6941048 CATA
66 CATA
6941052 TACATACCAAATTTAACAGCACTTTTACACCA
1 TACATACCAAATTTAACAGCACTTTTACACCA
6941084 TAAGATTATA
Statistics
Matches: 222, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
69 191 0.86
71 31 0.14
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.26
Consensus pattern (69 bp):
TACATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAGCATATATACAACAAATAGGCAG
CATA
Found at i:6941051 original size:22 final size:23
Alignment explanation
Indices: 6940954--6941053 Score: 87
Period size: 22 Copynumber: 4.4 Consensus size: 23
6940944 CAAAATTTAA
6940954 CAGCATATATACAACAAATTG-G
1 CAGCATATATACAACAAATTGAG
* * * *
6940976 CAACATATACATACCAAATTGAG
1 CAGCATATATACAACAAATTGAG
* * * * *
6940999 CAGCATTTTTACACCAAAATTTAT
1 CAGCATATATACAAC-AAATTGAG
*
6941023 CAGCATATATACAACAAA-TGGG
1 CAGCATATATACAACAAATTGAG
6941045 CAGCATATA
1 CAGCATATA
6941054 CATACCAAAT
Statistics
Matches: 59, Mismatches: 17, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
22 27 0.46
23 14 0.24
24 18 0.31
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.25
Consensus pattern (23 bp):
CAGCATATATACAACAAATTGAG
Found at i:6941072 original size:45 final size:46
Alignment explanation
Indices: 6940871--6941069 Score: 154
Period size: 45 Copynumber: 4.3 Consensus size: 46
6940861 CAGCACTTTT
* *
6940871 ACACCAAAATTTAACAACATATATACAGCAAATAG-GCAGCATATAC
1 ACACC-AAATTTAACAACATATATACACCAAATTGAGCAGCATATAC
* * * * *
6940917 ATACCAAATTTAACAACACT-TTTACACCAAAATTTAACAGCATATAT
1 ACACCAAATTTAACAACA-TATATACACC-AAATTGAGCAGCATATAC
* ** * * * **
6940964 ACAACAAA-TTGGCAACATATACATACCAAATTGAGCAGCATTTTT
1 ACACCAAATTTAACAACATATATACACCAAATTGAGCAGCATATAC
* * * *
6941009 ACACCAAAATTTATCAGCATATATACAACAAA-TGGGCAGCATATAC
1 ACACC-AAATTTAACAACATATATACACCAAATTGAGCAGCATATAC
*
6941055 ATACCAAATTTAACA
1 ACACCAAATTTAACA
6941070 GCACTTTTAC
Statistics
Matches: 116, Mismatches: 31, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
45 47 0.41
46 38 0.33
47 31 0.27
ACGTcount: A:0.47, C:0.21, G:0.08, T:0.25
Consensus pattern (46 bp):
ACACCAAATTTAACAACATATATACACCAAATTGAGCAGCATATAC
Found at i:6941272 original size:24 final size:22
Alignment explanation
Indices: 6941237--6941497 Score: 162
Period size: 24 Copynumber: 11.3 Consensus size: 22
6941227 GCATATACAT
*
6941237 ACCAAATTTAACAGCACTTTTAC
1 ACCAAATTTAACAGCA-TTATAC
6941260 ACCAAAATTTAACAGCATATATAC
1 ACC-AAATTTAACAGCAT-TATAC
* *
6941284 AGCAAA--TAGGCAGCA-TATAC
1 ACCAAATTTA-ACAGCATTATAC
*
6941304 ATACCAAATTTAACAGCACTTTTAC
1 --ACCAAATTTAACAGCA-TTATAC
6941329 ACCAAAATTTAACAGCATATATAC
1 ACC-AAATTTAACAGCAT-TATAC
** *
6941353 AGTAAA--TAGGCAGCA-TATAC
1 ACCAAATTTA-ACAGCATTATAC
*
6941373 ATACCAAATTTAACAGCACTTTTAC
1 --ACCAAATTTAACAGCA-TTATAC
6941398 ACCAAAATTTAACAGCATATATAC
1 ACC-AAATTTAACAGCAT-TATAC
* *
6941422 AGCAAA--TAGGCAGCA-TATAC
1 ACCAAATTTA-ACAGCATTATAC
*
6941442 ATACCAAATTTAACAGCACTTTTAC
1 --ACCAAATTTAACAGCA-TTATAC
6941467 ACCAAAATTTAACAGCATATATAC
1 ACC-AAATTTAACAGCAT-TATAC
*
6941491 AACAAAT
1 ACCAAAT
6941498 NNNNNNNNNN
Statistics
Matches: 187, Mismatches: 22, Indels: 58
0.70 0.08 0.22
Matches are distributed among these distances:
20 15 0.08
21 6 0.03
22 29 0.16
23 44 0.24
24 81 0.43
25 12 0.06
ACGTcount: A:0.46, C:0.21, G:0.08, T:0.25
Consensus pattern (22 bp):
ACCAAATTTAACAGCATTATAC
Found at i:6941290 original size:69 final size:69
Alignment explanation
Indices: 6941208--6941497 Score: 535
Period size: 69 Copynumber: 4.2 Consensus size: 69
6941198 GGACAGCTTT
* * *
6941208 TATATACAACAAATGGGTAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
6941273 AGCA
66 AGCA
6941277 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
6941342 AGCA
66 AGCA
*
6941346 TATATACAGTAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
6941411 AGCA
66 AGCA
6941415 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
6941480 AGCA
66 AGCA
*
6941484 TATATACAACAAAT
1 TATATACAGCAAAT
6941498 NNNNNNNNNN
Statistics
Matches: 215, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 215 1.00
ACGTcount: A:0.46, C:0.21, G:0.08, T:0.26
Consensus pattern (69 bp):
TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
AGCA
Found at i:6941321 original size:45 final size:45
Alignment explanation
Indices: 6941264--6941487 Score: 149
Period size: 45 Copynumber: 4.9 Consensus size: 45
6941254 TTTTACACCA
* *
6941264 AAATTTAACAGCATATATACAGCAAA-TAGGCAGCATATACATACC
1 AAATTTAACAGCATATATACACCAAATTA-ACAGCATATACATACC
* * * **
6941309 AAATTTAACAGCACT-TTTACACCAAAATTTAACAGCATATATACAGT
1 AAATTTAACAGCA-TATATACACC-AAA-TTAACAGCATATACATACC
* * * *
6941356 AAA--TAGGCAGCATATACATACCAAATTTAACAGCACTTTTAC--ACC
1 AAATTTA-ACAGCATATATACACCAAA-TTAACAGCA--TATACATACC
* *
6941401 AAAATTTAACAGCATATATACAGCAAA-TAGGCAGCATATACATACC
1 -AAATTTAACAGCATATATACACCAAATTA-ACAGCATATACATACC
*
6941447 AAATTTAACAGCACT-TTTACACCAAAATTTAACAGCATATA
1 AAATTTAACAGCA-TATATACACC-AAA-TTAACAGCATATA
6941488 TACAACAAAT
Statistics
Matches: 137, Mismatches: 24, Indels: 34
0.70 0.12 0.17
Matches are distributed among these distances:
44 4 0.03
45 57 0.42
46 29 0.21
47 41 0.30
48 6 0.04
ACGTcount: A:0.46, C:0.21, G:0.08, T:0.25
Consensus pattern (45 bp):
AAATTTAACAGCATATATACACCAAATTAACAGCATATACATACC
Found at i:6942357 original size:41 final size:41
Alignment explanation
Indices: 6942312--6942468 Score: 215
Period size: 41 Copynumber: 3.8 Consensus size: 41
6942302 TTGTATAAAA
* * * * *
6942312 CACCGGCATAAAGCCTGCTAGGCACAAAGCCCGATACATTT
1 CACCGGCACAAAGCCTGCTAGGCATAAAGCCTGATATAATT
* * *
6942353 CACCGGCACAAAGCCTACTAGACATAAAGTCTGATATAATT
1 CACCGGCACAAAGCCTGCTAGGCATAAAGCCTGATATAATT
*
6942394 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
1 CACCGGCACAAAGCCTGCTAGGCATAAAGCCTGATATAATT
* *
6942435 CACCGGCATAAAGCTTGCTAGGCATAAAGCCTGA
1 CACCGGCACAAAGCCTGCTAGGCATAAAGCCTGA
6942469 ACTTACAAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 101 1.00
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (41 bp):
CACCGGCACAAAGCCTGCTAGGCATAAAGCCTGATATAATT
Found at i:6942883 original size:28 final size:30
Alignment explanation
Indices: 6942844--6942902 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 30
6942834 TTTTATTATA
6942844 TTAATATATTTAATTT-ATAA-AACTAACC
1 TTAATATATTTAATTTAATAATAACTAACC
*
6942872 TTAATGAT-TTTACTTTAATAATTAACTAACC
1 TTAAT-ATATTTAATTTAATAA-TAACTAACC
6942903 ATGTCCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
28 12 0.46
29 6 0.23
31 8 0.31
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (30 bp):
TTAATATATTTAATTTAATAATAACTAACC
Found at i:6943079 original size:13 final size:13
Alignment explanation
Indices: 6943061--6943085 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6943051 ACAAACGATA
6943061 AAATTTTCACACG
1 AAATTTTCACACG
6943074 AAATTTTCACAC
1 AAATTTTCACAC
6943086 AAGTAAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:6950242 original size:26 final size:27
Alignment explanation
Indices: 6950213--6950265 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
6950203 ATGATCGTAA
6950213 TGCCCCTAGAGGGTAAATAACT-ATTT
1 TGCCCCTAGAGGGTAAATAACTGATTT
* * *
6950239 TGCCCCTCGTGGGTAAATGACTGATTT
1 TGCCCCTAGAGGGTAAATAACTGATTT
6950266 GTGCTATGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (27 bp):
TGCCCCTAGAGGGTAAATAACTGATTT
Found at i:6951600 original size:25 final size:25
Alignment explanation
Indices: 6951548--6951634 Score: 81
Period size: 25 Copynumber: 3.4 Consensus size: 25
6951538 AAAGTAAAAG
* *
6951548 AGAAAGAAATAG--AAAAAGAATGAG
1 AGAAAGAAA-AGAAAAAAAGAAGGAA
* *
6951572 AGAAAGAAACA-AAACAGAGAAGGAA
1 AGAAAGAAA-AGAAAAAAAGAAGGAA
6951597 AGAAAGAAAAGAAAAAAAGAAGGAA
1 AGAAAGAAAAGAAAAAAAGAAGGAA
6951622 AGAAGGAGAAAAG
1 AGAA--AGAAAAG
6951635 TTCGGGTTTC
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
24 11 0.22
25 33 0.65
27 7 0.14
ACGTcount: A:0.69, C:0.02, G:0.26, T:0.02
Consensus pattern (25 bp):
AGAAAGAAAAGAAAAAAAGAAGGAA
Found at i:6952538 original size:41 final size:38
Alignment explanation
Indices: 6952493--6952599 Score: 101
Period size: 37 Copynumber: 2.8 Consensus size: 38
6952483 ACTTCGATTT
*
6952493 GATGAGACATTGGGTGTCAATTTATTACTACGGATTAATTC
1 GATGAGACATTGGGTGTCAATTTATTACT--GGATTAA-CC
* * * * *
6952534 GATGAGGCACTAGGTGCCAATTTACTT--TGGTTTAACC
1 GATGAGACATTGGGTGTCAATTTA-TTACTGGATTAACC
*
6952571 GATGAGATATTGGGTGTCAATTTATTACT
1 GATGAGACATTGGGTGTCAATTTATTACT
6952600 TTGAATTATT
Statistics
Matches: 52, Mismatches: 11, Indels: 9
0.72 0.15 0.12
Matches are distributed among these distances:
36 2 0.04
37 20 0.38
38 7 0.13
40 1 0.02
41 20 0.38
42 2 0.04
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.36
Consensus pattern (38 bp):
GATGAGACATTGGGTGTCAATTTATTACTGGATTAACC
Found at i:6958740 original size:44 final size:44
Alignment explanation
Indices: 6958677--6958957 Score: 168
Period size: 44 Copynumber: 6.1 Consensus size: 44
6958667 CATCGTGGCC
6958677 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-GCTACA
* * * * ***
6958721 AATCTTATCTCCCTGAAGTTACAGTAGAGCAAATTGAAGATGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * * * *
6958765 AATCTTATTTCCTTGAAGTTACATTGGAACAGATTAAAGCTACAAGTTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC-----A
** * ***
6958814 CGAATCTTATCTCCCTGAAAATGCAGTGGAGCAGATTGAAGATGTG
1 --AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* ** * *
6958860 AATCTTATTTCTTTGAAGTTGCAGTGGAACAGATTAAAGTGACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T----TG--AAGCTACA
** * *
6958911 AATCTTATCTCCCTGAAGTTGCAGTATAGTAGATTGAAGCAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
6958955 AAT
1 AAT
6958958 TCTACACCTC
Statistics
Matches: 173, Mismatches: 49, Indels: 30
0.69 0.19 0.12
Matches are distributed among these distances:
44 103 0.60
45 3 0.02
46 2 0.01
49 2 0.01
50 1 0.01
51 62 0.36
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
Found at i:6958934 original size:95 final size:95
Alignment explanation
Indices: 6958717--6958949 Score: 351
Period size: 95 Copynumber: 2.5 Consensus size: 95
6958707 AGATTAAGGC
* *
6958717 TACAAATCTTATCTCCCTGAAGTTACAGTAGAGCAAATTGAAGATGTGAATCTTATTTCCTTGAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATGTGAATCTTATTTCCTTGAA
*
6958782 GTTACATTGGAACAGATTAAAGCTACAAGT
66 GTTACAGTGGAACAGATTAAAGCTACAAGT
* ** * *
6958812 TACGAATCTTATCTCCCTGAAAATGCAGTGGAGCAGATTGAAGATGTGAATCTTATTTCTTTGAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATGTGAATCTTATTTCCTTGAA
*
6958877 GTTGCAGTGGAACAGATTAAAG-TGACAAGT
66 GTTACAGTGGAACAGATTAAAGCT-ACAAGT
* *
6958907 TACAAATCTTATCTCCCTGAAGTTGCAGTATAGTAGATTGAAG
1 TACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAG
6958950 CAACAAATTC
Statistics
Matches: 122, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
94 1 0.01
95 121 0.99
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (95 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATGTGAATCTTATTTCCTTGAA
GTTACAGTGGAACAGATTAAAGCTACAAGT
Found at i:6958972 original size:95 final size:95
Alignment explanation
Indices: 6958717--6958981 Score: 232
Period size: 95 Copynumber: 2.8 Consensus size: 95
6958707 AGATTAAGGC
** * * *** **
6958717 TACAAATCTTATCTCCCTGAAGTTACAGTAGAGCAAATTGAAGATGTGAATCTTATTTCCT-TGA
1 TACAAATCTTATCTCCCTGAAAATGCAGTAGAGCAGATTGAAGATACAAATCTTA-CACCTCTGA
*
6958781 AGTTACATTGGAACAGATTAAAGCTACAAGT
65 AGTTACAGTGGAACAGATTAAAGCTACAAGT
* * *** *** *
6958812 TACGAATCTTATCTCCCTGAAAATGCAGTGGAGCAGATTGAAGATGTGAATCTTATTTCTTTGAA
1 TACAAATCTTATCTCCCTGAAAATGCAGTAGAGCAGATTGAAGATACAAATCTTACACCTCTGAA
*
6958877 GTTGCAGTGGAACAGATTAAAG-TGACAAGT
66 GTTACAGTGGAACAGATTAAAGCT-ACAAGT
** * *
6958907 TACAAATCTTATCTCCCTGAAGTTGCAGTATAGTAGATTGAAGCA-ACAAAT-TCTACACCTCTG
1 TACAAATCTTATCTCCCTGAAAATGCAGTAGAGCAGATTGAAG-ATACAAATCT-TACACCTCTG
* *
6958970 AAGCTAGAGTGG
64 AAGTTACAGTGG
6958982 GTTAGAATGA
Statistics
Matches: 141, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
94 6 0.04
95 134 0.95
96 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (95 bp):
TACAAATCTTATCTCCCTGAAAATGCAGTAGAGCAGATTGAAGATACAAATCTTACACCTCTGAA
GTTACAGTGGAACAGATTAAAGCTACAAGT
Found at i:6960652 original size:3 final size:3
Alignment explanation
Indices: 6960639--6960699 Score: 61
Period size: 3 Copynumber: 20.0 Consensus size: 3
6960629 AAAAAATTAG
* * * *
6960639 ATT ATTT ATT ATT ATT GTT ATT ACT ATT GTT ATT ATT ATC ATT -TT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6960684 CATT ATT ATT ATT ATT
1 -ATT ATT ATT ATT ATT
6960700 TACGCATATT
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
2 2 0.04
3 40 0.85
4 5 0.11
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:6966402 original size:21 final size:22
Alignment explanation
Indices: 6966357--6966402 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
6966347 CTGTTTGTGA
*
6966357 AACCTAGTGTGATTTTCTAGTAT
1 AACCTAGTGTAATTTTCTAG-AT
*
6966380 AACCTTGTGTAATTTTCTA-AT
1 AACCTAGTGTAATTTTCTAGAT
6966401 AA
1 AA
6966403 ATAATTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
23 17 0.81
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (22 bp):
AACCTAGTGTAATTTTCTAGAT
Found at i:6973134 original size:21 final size:21
Alignment explanation
Indices: 6973084--6973136 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
6973074 GGGACAGATT
*
6973084 GAATATATATAATTAAGGTTC
1 GAATATTTATAATTAAGGTTC
* *
6973105 AAATAATTTGTAATTAA-GTTCC
1 GAAT-ATTTATAATTAAGGTT-C
6973127 GAATATTTAT
1 GAATATTTAT
6973137 CTGTTAATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.42, C:0.06, G:0.11, T:0.42
Consensus pattern (21 bp):
GAATATTTATAATTAAGGTTC
Found at i:6990685 original size:38 final size:38
Alignment explanation
Indices: 6990637--6990737 Score: 159
Period size: 38 Copynumber: 2.7 Consensus size: 38
6990627 TCCTTCTAGC
*
6990637 TTTTGCCGATTTTCTCCCTCTGTTT-TTTATCTTTTCTT
1 TTTTGCCGATTTGCTCCCTCTGTTTATTT-TCTTTTCTT
*
6990675 TTTTGCCGATTTGCTCTCTCTGTTTATTTTCTTTTCTT
1 TTTTGCCGATTTGCTCCCTCTGTTTATTTTCTTTTCTT
*
6990713 TTCTGCCGATTTGCTCCCTCTGTTT
1 TTTTGCCGATTTGCTCCCTCTGTTT
6990738 CCCCTTTTCT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 55 0.95
39 3 0.05
ACGTcount: A:0.05, C:0.25, G:0.11, T:0.59
Consensus pattern (38 bp):
TTTTGCCGATTTGCTCCCTCTGTTTATTTTCTTTTCTT
Found at i:6992882 original size:48 final size:48
Alignment explanation
Indices: 6992830--6992977 Score: 126
Period size: 48 Copynumber: 3.1 Consensus size: 48
6992820 AGTAATTTCA
*
6992830 TATAAGAATATTAATTATTAGGAATTTTATTAAATTATATATTTTAAT
1 TATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAAT
* * ** * * ** *
6992878 TATAA-TATATTTAA-TAATAATTATGTT-TTATGATT-TGAGTAAATTCA-
1 TATAAGAATA-TTAATTATTAAGAATTTTATTA-AATTAT-A-TATTTTAAT
*
6992925 TATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAAT
1 TATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAAT
6992973 TATAA
1 TATAA
6992978 TATATTTAAT
Statistics
Matches: 71, Mismatches: 20, Indels: 18
0.65 0.18 0.17
Matches are distributed among these distances:
46 4 0.06
47 28 0.39
48 35 0.49
49 4 0.06
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (48 bp):
TATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAAT
Found at i:6992892 original size:15 final size:15
Alignment explanation
Indices: 6992857--6992898 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
6992847 TTAGGAATTT
*
6992857 TATTAAATTAT-ATA
1 TATTTAATTATAATA
6992871 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
6992885 TATTTAATAATAAT
1 TATTTAATTATAAT
6992899 TATGTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:6992915 original size:95 final size:95
Alignment explanation
Indices: 6992810--6993000 Score: 346
Period size: 95 Copynumber: 2.0 Consensus size: 95
6992800 GTATCATATA
* *
6992810 TTATGATTTGAGTAATTTCATATAAGAATATTAATTATTAGGAATTTTATTAAATTATATATTTT
1 TTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTT
*
6992875 AATTATAATATATTTAATAATAATTATGTT
66 AATTATAATATATTTAATAAAAATTATGTT
*
6992905 TTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTT
1 TTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTT
6992970 AATTATAATATATTTAATAAAAATTATGTT
66 AATTATAATATATTTAATAAAAATTATGTT
6993000 T
1 T
6993001 AAATATGATT
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
95 92 1.00
ACGTcount: A:0.42, C:0.01, G:0.07, T:0.50
Consensus pattern (95 bp):
TTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTT
AATTATAATATATTTAATAAAAATTATGTT
Found at i:6993043 original size:88 final size:94
Alignment explanation
Indices: 6992818--6993046 Score: 290
Period size: 95 Copynumber: 2.5 Consensus size: 94
6992808 TATTATGATT
* * * *
6992818 TGAGTAATTTCATATAAGAATATTAATTATTAGGAATTTTATTAAATTATATATTTTAATTATAA
1 TGAGTAAATTCATAT-AGAATATTGATTATTAAGAATCTTATTAAATTATATATTTTAATTATAA
* * *
6992883 TATATTTAATAATAATTATGTTTTATGATT
65 TATATTTAATAAAAATTATGTTTTATAATA
*
6992913 TGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAA
1 TGAGTAAATTCATAT-AGAATATTGATTATTAAGAATCTTATTAAATTATATATTTTAATTATAA
6992978 TATATTTAATAAAAATTATG-TTTA-AATA
65 TATATTTAATAAAAATTATGTTTTATAATA
* * * *
6993006 TGATTAAATT-AT-T-TATTATTGA-TATTAATAATCTTATTAAA
1 TGAGTAAATTCATATAGAATATTGATTATTAAGAATCTTATTAAA
6993047 ATTTAAATAA
Statistics
Matches: 123, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
88 17 0.14
89 7 0.06
91 1 0.01
92 2 0.02
93 11 0.09
94 4 0.03
95 81 0.66
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (94 bp):
TGAGTAAATTCATATAGAATATTGATTATTAAGAATCTTATTAAATTATATATTTTAATTATAAT
ATATTTAATAAAAATTATGTTTTATAATA
Found at i:6993231 original size:16 final size:16
Alignment explanation
Indices: 6993210--6993255 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
6993200 TTGATTTGCT
6993210 ATTACACCTCTATTAC
1 ATTACACCTCTATTAC
*
6993226 ATTACACCTCTATTCC
1 ATTACACCTCTATTAC
*
6993242 ATTACGCCTCTATT
1 ATTACACCTCTATT
6993256 TCAATACAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.26, C:0.33, G:0.02, T:0.39
Consensus pattern (16 bp):
ATTACACCTCTATTAC
Found at i:7000805 original size:132 final size:132
Alignment explanation
Indices: 7000562--7001487 Score: 1570
Period size: 132 Copynumber: 7.0 Consensus size: 132
7000552 GGTTGTCAGC
*
7000562 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTTTGGAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
* * * *
7000627 TCACCACATCAGGAAACTTTGGCTGCAGCTGCTGCCTACACAGACTGGCTTGTTGATGAAGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
7000692 TA
131 TA
*
7000694 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATACCTCAACTTCAAATGGCTATTCTGGAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
* * * *
7000759 TCACCACATCAGGAAACTTCAGCTGCAGCTGCTGCCGTCACGGACTGGCTTGTTGGTGAAGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
7000824 TA
131 TA
7000826 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATA---CAACTTCAAATGGCTATTCTGGAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
* * *
7000888 TCACCACATCAGGAAACTTTGGCTGCAGCTGCTGCCGACATGGACTGGCCTGTTGATGAGGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
7000953 TA
131 TA
* * *
7000955 TACAAACTTCATTTAGCCCTGCATCTCAAGGCAATATCTCAACTTCAAATGGCTACTCCGGAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
7001020 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
7001085 TA
131 TA
* *
7001087 TACAAACTTCATTTAGCCCTGCACCTAAAGGCAATATCTCAACTTCTAATGGCTATTCTGGAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
* *
7001152 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACATGGACTGGCCTGTTGATGAGGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
7001217 TA
131 TA
* *
7001219 TACAAACTCCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCCGGAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
*
7001284 TCACCACATCAGGAAACTTCGGCTGCAGCTGCAGCCGACACGGACTGGCCTGTTGATGAAGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
7001349 TA
131 TA
* * *
7001351 TACAAACTTCATTTAGCCCTGCACCTAAAGGCAATATCTCAACTTCTAATGGCTATTCTGCAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
* **
7001416 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCAACATTGACTGGCCTGTTGATGAAGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
7001481 TA
131 TA
7001483 TACAA
1 TACAA
7001488 GCTTTCTTTA
Statistics
Matches: 747, Mismatches: 44, Indels: 6
0.94 0.06 0.01
Matches are distributed among these distances:
129 121 0.16
132 626 0.84
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (132 bp):
TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
TA
Found at i:7002270 original size:19 final size:19
Alignment explanation
Indices: 7002237--7002273 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7002227 TTTTCTAATT
**
7002237 TTTAATTTCTTTAATTTTA
1 TTTAATTTCCATAATTTTA
7002256 TTTAATTTCCATAATTTT
1 TTTAATTTCCATAATTTT
7002274 TAAAAAAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTAATTTCCATAATTTTA
Found at i:7003258 original size:14 final size:14
Alignment explanation
Indices: 7003239--7003289 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
7003229 GTAAGAGTCA
*
7003239 TTTAATAATATATT
1 TTTAATATTATATT
*
7003253 TTTAATATTATTTT
1 TTTAATATTATATT
7003267 TTTAATTATTATATT
1 TTTAA-TATTATATT
*
7003282 TTTGATAT
1 TTTAATAT
7003290 AAAATATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (14 bp):
TTTAATATTATATT
Found at i:7004427 original size:24 final size:24
Alignment explanation
Indices: 7004379--7004428 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
7004369 TGGAAGAACA
*
7004379 AGATAAAGATGAAGACAATGTTGG
1 AGATAAAGATGAAGACAATGATGG
*
7004403 AGATGAAGATGAAGATCAA-GATGG
1 AGATAAAGATGAAGA-CAATGATGG
7004427 AG
1 AG
7004429 GTGGAGGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 20 0.87
25 3 0.13
ACGTcount: A:0.46, C:0.04, G:0.32, T:0.18
Consensus pattern (24 bp):
AGATAAAGATGAAGACAATGATGG
Found at i:7004821 original size:75 final size:74
Alignment explanation
Indices: 7004675--7005006 Score: 390
Period size: 75 Copynumber: 4.5 Consensus size: 74
7004665 TTTTTTTATT
* * * * * *
7004675 TCAATAATATAGTTATTTACAACCTACGAAAAAATGAAAAAATTTGTTTGTATTTTATTCTATTT
1 TCAATAATATACTTATTTACAATCTACAAAAAAATGAAAAAAGTTGTTTGTATTGTATTCTATTG
*
7004740 TATTTTAGA
66 TATTTTACA
* * *
7004749 TCAATAATATATTTATTTACAATCTACAAAAAAATGAAAAAAAGTTGTTTGTATTATACTCTATT
1 TCAATAATATACTTATTTACAATCTACAAAAAAATG-AAAAAAGTTGTTTGTATTGTATTCTATT
7004814 GTATTTTACA
65 GTATTTTACA
* * * *
7004824 TCAATAATGTACTTATTTACAAAT-TACAAAAAATTGAAAAAA-TTGTCTGTATTGT-TTGTATT
1 TCAATAATATACTTATTTAC-AATCTACAAAAAAATGAAAAAAGTTGTTTGTATTGTATTCTATT
7004886 GTATTTTACA
65 GTATTTTACA
* * * *
7004896 TTAATAACATACTTATTTACAATTTACGAAAAAATG-AAAAAGTTGTTTGTATTGTATTCTATTG
1 TCAATAATATACTTATTTACAATCTACAAAAAAATGAAAAAAGTTGTTTGTATTGTATTCTATTG
*
7004960 CATTTTTACA
66 TA-TTTTACA
* **
7004970 T---TAATATACTTATTTACAATGTACCCAAAAATGAAAA
1 TCAATAATATACTTATTTACAATCTACAAAAAAATGAAAA
7005007 GTCATGAAAA
Statistics
Matches: 224, Mismatches: 27, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
71 36 0.16
72 57 0.25
73 19 0.08
74 47 0.21
75 62 0.28
76 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (74 bp):
TCAATAATATACTTATTTACAATCTACAAAAAAATGAAAAAAGTTGTTTGTATTGTATTCTATTG
TATTTTACA
Found at i:7005178 original size:34 final size:34
Alignment explanation
Indices: 7005135--7005203 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
7005125 GCTTACTATG
7005135 CCTTAGGTTCCTACAATAACTACATAACCTTGGT
1 CCTTAGGTTCCTACAATAACTACATAACCTTGGT
7005169 CCTTAGGTTCCTACAATAACTACATAACCTTGGT
1 CCTTAGGTTCCTACAATAACTACATAACCTTGGT
7005203 C
1 C
7005204 AGTCTATCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.32
Consensus pattern (34 bp):
CCTTAGGTTCCTACAATAACTACATAACCTTGGT
Found at i:7006017 original size:15 final size:15
Alignment explanation
Indices: 7005979--7006020 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
7005969 ATATTCATGA
7005979 ATGAAAATAATGTAT
1 ATGAAAATAATGTAT
*
7005994 ATGTTAAATAATG-AT
1 ATG-AAAATAATGTAT
7006009 ATAGAAAATAAT
1 AT-GAAAATAAT
7006021 ATTTACTACC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (15 bp):
ATGAAAATAATGTAT
Found at i:7007297 original size:25 final size:25
Alignment explanation
Indices: 7007265--7007314 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7007255 AAGACTCGAA
7007265 AACGGAAATAATCAACTTAAACCCT
1 AACGGAAATAATCAACTTAAACCCT
7007290 AACGGAAATAATCAACTTAAACCCT
1 AACGGAAATAATCAACTTAAACCCT
7007315 GAGGCCTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.24, G:0.08, T:0.20
Consensus pattern (25 bp):
AACGGAAATAATCAACTTAAACCCT
Found at i:7023912 original size:917 final size:915
Alignment explanation
Indices: 7021749--7026388 Score: 4336
Period size: 918 Copynumber: 5.0 Consensus size: 915
7021739 GGAGGTGGTC
* * * *
7021749 AGTTTGCTACTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCTCATTTCTCTCAAG-TTATA
1 AGTTTTCTGCTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCACATTTTTCTCAAGCTT-TA
* ** *
7021813 C-TT--TAA-TG-GTTGTTTT-GTTTTCCATGTCCATTTCTTTTACTTTGAGCATGAGTAGCTAA
65 CTTTAATAACTGCTTTGTTTTCCATTTCCATGTCCATTTCTTTTACTTTGAGCATGAGTAGTTAA
* * *
7021872 ACCTCAAGGGAGGTTGGTTGATGGAGATGTGGGTAAACTAAAATCTTTGGACAAATGACTAAATC
130 ACCTCAAGGAAGGTTGGTTGATGGAGATATGGGTAAACTAAAACCTTT-G------G-----A-C
* * * * * *
7021937 ATAATAAATTATTATAAATCGAATAGACCTGAGAACTTAGGTAGTGACTCCCCTAAGAGAATATT
182 ---A-AAA-GA--ATAAATCGAATAGACCTTAGAACATAGGTAGTGAC-ACCCTAAGGGAATATC
** *** * * * * *
7022002 TAGGTAAGTGAGACTGGAAGGTAATGTTTTCGTGCACC-GATTCATTAGTCTCAGG-CTAGCTAG
239 TAGACAAGTGAGACCAAAAGGTAATCTTGTCATGCACCTG-TTCATTAGTCTC-GGATTAACTAG
* * * * * *
7022065 TGAGATGGGAAGATAAATCGTAGCTAATTCGTTTAAGTCGGTAAAATTGAGAT-TGAAAGATAAA
302 TGAGATCGAAAGATAAATCGTAGATAATTCGTCTAAGTCGATAAAATTGAGATCAG-AAGATAAA
* * * * * *
7022129 TTGGAGTCACTTAGTAATTTACACGATTTAAGTCCCTTATTTAAGGATCGGTGAACCAAATCAAA
366 ATGGAGCCACTTAGTAATTTACACGATTTAAGTCCCTTGTTTGAGGATCGGTGAACCACATCGAA
* *
7022194 GTCAACTAACCACCATTAGTTATTTATTGGATAGTCCC-TTAGTTTTACATTCTTTGCAATTTAG
431 GTCAACCAACCACCATTAGTTATTTATTGGATAGTCCCATT--TTTTACATTATTTGCAATTTAG
** * *
7022258 TCCTTAGAGTAGCATATCTAATTTTCGAGCAATATTTTCTTGTTATGAATCGTTGTACTATAAAA
494 TCCTTAGAGTAGCATATCTAATTTTCTTGCAATATTTTCTTGTTATGAATTGTCGTACTATAAAA
** ** * * * ** * **
7022323 TCATAGTAGT-GTTTACTTAGACTATATTATGTATGCTAGATATTTCTCAATCGTCACCTTTTTT
559 TTGTAGTAGTAG-CCACTTAGACTCTATTATGTATGCTAGTTATTGCTCAATCACCATCTCCTTT
* * * * * * * *
7022387 AGGTTTGACCTCTTGGAACACTTCGTGTTCCATCAGAACTATAAATATTACAACTGACTTATATG
623 GGGTTTAACC-CTTGGAATACTTTGTGTTCCATCGGAACTATAAATATTACAAATGACCTATACG
* ** * * *
7022452 CTTGCAGTAAAACCAGGCTTTAAAAAATTGTTTTATAAGTTCGTTGGTTTAATGTGCATATGTGA
687 CTTGCAGTAAAACCAGGCTTTAAAAAATTGTTTTATAAGTT-TTTTTTTTAATGCGCACATGCGA
* * * * ** * * *
7022517 AGCTGGTCAACTACCCCATGTTTAC-AATCCCGATGGACTCTATATGCTACTATAATCGAGCTAT
751 AGCCGGTCAACTACCCCATATTTACTATTCCTGGCGGACTCCATATGCTGCCATAATCGAGCTAT
* * * *
7022581 GCTTTTACACAATATACCCCATGTTTAACGTCCTTGCGGACTACTCCGTGCTTACTGTC-CTGGC
816 GGTTTTACACAATATACCCCATGTTTAACGTCCTGGCGGACTACT-CATGTTTACTGTCTC-GGC
* * *
7022645 GGACTATACCAGG-TGTCATAGTCA-AGCCATGGTCTTA
879 GGACTATA-CTGGTTGCCATAGT-AGAGCCATGGTATTA
* *
7022682 AGTTTTCTGCTCTTCAAGTTTTCTTGCATAAAAATCTCAACTTTCACATTTTTTCTCAAGCTATA
1 AGTTTTCTGCTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCACA-TTTTTCTCAAGCTTTA
* * * * *
7022747 CTTTAATGACTGCTTTGTTTTCAATTTCCATGTCTATTTCTTTTATTTTCAGCATGAGTAGTTAA
65 CTTTAATAACTGCTTTGTTTTCCATTTCCATGTCCATTTCTTTTACTTTGAGCATGAGTAGTTAA
* * * *
7022812 ACCTAAAGGAAGATTGGTTGATAGAGATATGGGCAAACTAAAACCTTTGGA-AAAAGGAATAAAT
130 ACCTCAAGGAAGGTTGGTTGATGGAGATATGGGTAAACTAAAACCTTTGGACAAAA-GAATAAAT
* * * ** * *
7022876 CGAATACACCTTAGAACGTAGATAGTGATGCCTCTAAGGGTATATCTAGACAAGTGAGACCAGAA
194 CGAATAGACCTTAGAACATAGGTAGTGACACC-CTAAGGGAATATCTAGACAAGTGAGACCAAAA
* * * ** * * *
7022941 GGTAATGTTGTCATGCACCTGTTCATTAGTCCCGAATTAACCGGTTAAATCGAAAGATAAATTGT
258 GGTAATCTTGTCATGCACCTGTTCATTAGTCTCGGATTAACTAGTGAGATCGAAAGATAAATCGT
* * * *
7023006 AGATAATTCATCTAAGTCAGA-AAATTTGATATCAGAAGATAAAATTGAGCCA--TACTGTAATT
323 AGATAATTCGTCTAAGTC-GATAAAATTGAGATCAGAAGATAAAATGGAGCCACTTA--GTAATT
* * * * * *
7023068 TGCGCAATTTAGGTCCTTTGCTTGAGGATCGGTGAACCACATCGAAGTCAACCAACCACCATTAG
385 TACACGATTTAAGTCCCTTGTTTGAGGATCGGTGAACCACATCGAAGTCAACCAACCACCATTAG
*
7023133 TTATTTATTGGATAGTCCCATTTTTTACATTTTTTTGCAATTTAGTCCTTAGAGTAGCATATCTA
450 TTATTTATTGGATAGTCCCATTTTTTACA-TTATTTGCAATTTAGTCCTTAGAGTAGCATATCTA
* * * * *
7023198 CTTTTCTTCCAATATTTTCTTGTTATGAATTTTCATACTATAAAACCTT-T-GTAGTTGCCACTT
514 ATTTTCTTGCAATATTTTCTTGTTATGAATTGTCGTACTATAAAA--TTGTAGTAGTAGCCACTT
* * * *
7023261 AGACTCTATTGTGTATGTTAGTCATTGCTCAATAACCATCTCCTTTGGGTTTAACCCTTGGAATA
577 AGACTCTATTATGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGGGTTTAACCCTTGGAATA
* * * * * *
7023326 ATTCGTTTTCCATTGGAACTATAAATTTTACAAATGACCTATACGCTTGTAGTAAAACC-GAGCT
642 CTTTGTGTTCCATCGGAACTATAAATATTACAAATGACCTATACGCTTGCAGTAAAACCAG-GCT
* * * * * ** *
7023390 TTAAAAAATTATTTTATAAGTTATTTTCTTTAATGTGCACATGCGAAGCCAGTCAACAACTTCGT
706 TTAAAAAATTGTTTTATAAGTT-TTTTTTTTAATGCGCACATGCGAAGCCGGTCAACTACCCCAT
* * * * * * * *
7023455 ATTTACTATTTC-GGTGGACTCCATATGCTGCTATAATTGAGCTATGATCTTACCCAATATGCCC
770 ATTTACTATTCCTGGCGGACTCCATATGCTGCCATAATCGAGCTATGGTTTTACACAATATACCC
* * * * *
7023519 TATATTTAACGTCCTGGCGGACTACCTCGTGTTTACTGTCTCGGCGAACTATACTGGTTGTCATA
835 CATGTTTAACGTCCTGGCGGACTA-CTCATGTTTACTGTCTCGGCGGACTATACTGGTTGCCATA
** *
7023584 GCCGAGCGATGGTATTA
899 GTAGAGCCATGGTATTA
* * * *
7023601 A-TTTTCTGCTCTTTAAGTTTTCTTCCATAGAAATCTCAACTTTCATATTTTTCTTAAGCTTTAC
1 AGTTTTCTGCTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCACATTTTTCTCAAGCTTTAC
* *
7023665 TTTAATAACTGTTTTGTTTTCCATTTCCATGTCCATTTCTTTTTCTTTGAGCATGAGTAGTTAAA
66 TTTAATAACTGCTTTGTTTTCCATTTCCATGTCCATTTCTTTTACTTTGAGCATGAGTAGTTAAA
* * * * *
7023730 CCTCAAGGAAGGTTGGTTGATGGAAATGTGGGTGAAA-TAAAACCTTCGGACAAAAGACTAAATT
131 CCTCAAGGAAGGTTGGTTGATGGAGATATGGGT-AAACTAAAACCTTTGGACAAAAGAATAAATC
* *
7023794 GAATAAACCTTAGAACATAGGTAGTGACACCCATAAGTGAATATCTAGACAAGTGAGACCAAAAG
195 GAATAGACCTTAGAACATAGGTAGTGACACCC-TAAGGGAATATCTAGACAAGTGAGACCAAAAG
* * *
7023859 GTAATCTTGTCATGCA-CTCGTTTATTAGTCTCGGATTAATTAGTGAGATCGAAAGATAAATCAT
259 GTAATCTTGTCATGCACCT-GTTCATTAGTCTCGGATTAACTAGTGAGATCGAAAGATAAATCGT
* * * * *
7023923 AGCTAATTCGTTTAAGTCGATAAAATTGAGAT-TGAAAGATAAAATGGAGTCACCTAGTAATTTA
323 AGATAATTCGTCTAAGTCGATAAAATTGAGATCAG-AAGATAAAATGGAGCCACTTAGTAATTTA
* * * * * * *
7023987 TACGATTTAATTCCTTTTTTTGAGGATCGGTGAACCACATCAAATTCAACCAACCACCATTAATT
387 CACGATTTAAGTCCCTTGTTTGAGGATCGGTGAACCACATCGAAGTCAACCAACCACCATTAGTT
* * *
7024052 ATTTATTGGATA--CCCTCTTAGTTTTACATTATTTGCAATTAAGTCCTCAGAGTAGCATATCTA
452 ATTTATTGGATAGTCCC-ATT--TTTTACATTATTTGCAATTTAGTCCTTAGAGTAGCATATCTA
* * *
7024115 ATTTTCTTGCAATATTTTCTTATTATGAATTGTCGTACTATAAAATTGTAGTAGGAGCCACTTAA
514 ATTTTCTTGCAATATTTTCTTGTTATGAATTGTCGTACTATAAAATTGTAGTAGTAGCCACTTAG
*
7024180 ACTCTATTATGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGGGTTCAACCCCTTGGAATAC
579 ACTCTATTATGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGGGTTTAA-CCCTTGGAATAC
* * * ***
7024245 TTTATGTTCCATCGGAACTATAAATATTACAATTGACCTATATGCTTATTGTAAAACCAGGCTTT
643 TTTGTGTTCCATCGGAACTATAAATATTACAAATGACCTATACGCTTGCAGTAAAACCAGGCTTT
* * * * * * * *
7024310 --AAATTTTTTTTATAAGTTTGTTTTTTTAATACGTAGATACGAAGCCGGTCAACTACCCCTTGT
708 AAAAAATTGTTTTATAAGTTT-TTTTTTTAATGCGCACATGCGAAGCCGGTCAACTACCCCATAT
* * * *
7024373 TTA-TTTTCCTGGCAGACTCCATATGTTGCCATAA-CTGAGCTATGGTTTTACACAATATACCTC
772 TTACTATTCCTGGCGGACTCCATATGCTGCCATAATC-GAGCTATGGTTTTACACAATATACCCC
* *
7024436 ATGTTTAACGTCTTGATGAACTACTTCATGCTTACTGTATCGGTAAACTACCTCATATTTACTAT
836 ATGTTTAA---C-----G---T-C--C-TG------G---CGG---ACTA-CTCATGTTTACTGT
* * * *
7024501 CTCAGTGGACTATATTGGTTGCCATAGAAGAGCCATGGTATTA
873 CTCGGCGGACTATACTGGTTGCCATAGTAGAGCCATGGTATTA
* * * *
7024544 AGTTTTCTTCTCTTTAAGTTTTCTTGCATAAAACTCGCAACATTCACATTTTTCTCAAGCTTTAC
1 AGTTTTCTGCTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCACATTTTTCTCAAGCTTTAC
* * * * *
7024609 TTTAATAGCTGCATTGTTTTCCATTTCTATGTCCTTTTCTTTTACTTTGAGCATGAGTAGCTAAA
66 TTTAATAACTGCTTTGTTTTCCATTTCCATGTCCATTTCTTTTACTTTGAGCATGAGTAGTTAAA
* * * * * * *
7024674 CTTCAAGGAAGGTTGGTTGATTGATATATGGGTAAACTAAAACATTTGGACAAAGGACTAAATCA
131 CCTCAAGGAAGGTTGGTTGATGGAGATATGGGTAAACTAAAACCTTTGGACAAAAGAATAAATCG
* * * * * * *
7024739 AATAGACCTTAGAACCTAGGTAGCGACGCCCTAAGGGAATATTTAGGCAAGTGAGACTAAAAGGC
196 AATAGACCTTAGAACATAGGTAGTGACACCCTAAGGGAATATCTAGACAAGTGAGACCAAAAGGT
* *
7024804 AATCTTTTCATGCACCTGTTCATTAGTAC-CAGATTAACTAGTGAGATC-AGAAGATAAAATCGT
261 AATCTTGTCATGCACCTGTTCATTAGT-CTCGGATTAACTAGTGAGATCGA-AAGAT-AAATCGT
* * * ** *
7024867 AGCTCATTCGTCCAAGTCGATAAAATTGAGATTGGAAGATAAAATGGAGTCACTTAGTAATTTAC
323 AGATAATTCGTCTAAGTCGATAAAATTGAGATCAGAAGATAAAATGGAGCCACTTAGTAATTTAC
* *
7024932 ACGATTTAAGTCCCTTGTTTGAGGATCGGTGAAACACATCGAATTCAACCAACCACCATTAGTTA
388 ACGATTTAAGTCCCTTGTTTGAGGATCGGTGAACCACATCGAAGTCAACCAACCACCATTAGTTA
* * * * * *
7024997 TATATTAGATAGTCCCTTATTTTTACACTATTTACAATTTAGTCCTTAGAGTAGCATATCTAATA
453 TTTATTGGATAGTCCCAT-TTTTTACATTATTTGCAATTTAGTCCTTAGAGTAGCATATCTAATT
** * *
7025062 TTCTTGTTATATTTTCTTGTTATGAATTGTCATACTATAAAATTGTAGTAGAAGCCACTTAGACT
517 TTCTTGCAATATTTTCTTGTTATGAATTGTCGTACTATAAAATTGTAGTAGTAGCCACTTAGACT
* * ** ** *
7025127 CTATTGTGTATGATAGTTATTGCTCAATGTCCATCTCCTTTGGGATCGACCCCTTGGAATACTTT
582 CTATTATGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGGG-TTTAACCCTTGGAATACTTT
* * * *
7025192 GTGTTCTATTGGAACTATAAATATTACAAATGACCTATACGCTTGCAGTATAACCAGGCTTTACA
646 GTGTTCCATCGGAACTATAAATATTACAAATGACCTATACGCTTGCAGTAAAACCAGGCTTTAAA
* ** *
7025257 AAATTGTTTTATAAGTTTTTTGTTTTAATGCACACATATGAAGCCGGTCAACTACCCCATACTTA
711 AAATTGTTTTATAAGTTTTTT-TTTTAATGCGCACATGCGAAGCCGGTCAACTACCCCATATTTA
* * * * *
7025322 CTA-TCCTGGCGGACTCTATATGCTGCCATAGTCGAGTTATGGTATTACATAATATACCCCATGT
775 CTATTCCTGGCGGACTCCATATGCTGCCATAATCGAGCTATGGTTTTACACAATATACCCCATGT
* * * * *
7025386 TTAATGTCTTGGCGAACTACTCTATGCTTACTATCCTGACAAACGTATTTATTGTCCCAATGGAC
840 TTAACGTCCTGGCGGACTACTC-ATG-TT--TA--CTGTC--TCG--------G---C---GGAC
*
7025451 TATACTGGTTGCCATAGTAGAGCCATGGTCTTA
883 TATACTGGTTGCCATAGTAGAGCCATGGTATTA
* ** * * * * *
7025484 ATTTTTCTTTTCATTAAGTTTTCTTGCATAAAAATCTCAAATTTTACATTTTTCTTAAGTTTTAC
1 AGTTTTCTGCTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCACATTTTTCTCAAGCTTTAC
*** * *
7025549 TTTAATGGTTGCTTTGTTTTCCA-TT-C-TGT-CATTTTCTTTAACTTTAAGCATGAGTA-TCTA
66 TTTAATAACTGCTTTGTTTTCCATTTCCATGTCCA-TTTCTTTTACTTTGAGCATGAGTAGT-TA
** * * *
7025609 AACCTCAAAAAAGGTTGGTTGATGGAGATGTAGGTAAACTAAAACCTTTGGACAAAGGAATAAAT
129 AACCTCAAGGAAGGTTGGTTGATGGAGATATGGGTAAACTAAAACCTTTGGACAAAAGAATAAAT
* * * *
7025674 TGAATAGACCTTAGAACTTAGGTAGTGA-AGCCCCTAAGGGAATATTTAGGCAAGTGAGACCAAA
194 CGAATAGACCTTAGAACATAGGTAGTGACA--CCCTAAGGGAATATCTAGACAAGTGAGACCAAA
* * * *
7025738 ACGTAATATTGTCATCCA-C----C--T-GT-TC------A-T--T-AGATCGAAAGATGAATCG
257 AGGTAATCTTGTCATGCACCTGTTCATTAGTCTCGGATTAACTAGTGAGATCGAAAGATAAATCG
* *
7025784 TAGATAATTCGTCTAAGTCGGTAAAATTGAGATCAGAAGAAAAAATGGAGCCACTTAGTAATTTA
322 TAGATAATTCGTCTAAGTCGATAAAATTGAGATCAGAAGATAAAATGGAGCCACTTAGTAATTTA
* * * *
7025849 CGCGATTTAAGTCCCTTGTTTGAGCATCGGTGAACCACATTGAAGTCAACCAACCATCATTAGTT
387 CACGATTTAAGTCCCTTGTTTGAGGATCGGTGAACCACATCGAAGTCAACCAACCACCATTAGTT
* * * *
7025914 ATTTATTGGATAGT-CTATTATTTTTACATTTTTTACAATTTAGTACTTAGAGTAGCATATCTAA
452 ATTTATTGGATAGTCCCA-T-TTTTTACATTATTTGCAATTTAGTCCTTAGAGTAGCATATCTAA
* * * **
7025978 TTTTCTTGCAATATTTTATTATTATGAATTATCGTACTATAAAATTGTCTTAGTAGCCACTTA-A
515 TTTTCTTGCAATATTTTCTTGTTATGAATTGTCGTACTATAAAATTGTAGTAGTAGCCACTTAGA
* * * * * * *
7026042 TCTCAATTATATATGCTAGTTATTGCGCAATCGCCATCTACTTTGGGTTTGACCCCTTGAAATAC
580 -CTCTATTATGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGGGTTT-AACCCTTGGAATAC
* * * *
7026107 TTTGTGTTCCATCGGAACTATAAATATTACAACTGACCTATACGCTTACAGTAAAATC-GAACTT
643 TTTGTGTTCCATCGGAACTATAAATATTACAAATGACCTATACGCTTGCAGTAAAACCAG-GCTT
* * * * ** * *
7026171 TAAAAAATTGTTTTATAGGTTTGTTGTTTTCATGCGCACATGCGAAGCTGGTCAACTACATCGTG
707 TAAAAAATTGTTTTATAAGTTT-TTTTTTTAATGCGCACATGCGAAGCCGGTCAACTACCCCATA
* *** * * * * * * *
7026236 TTTATTA-TCCTGATAGACTTCATATGTTGTCATAGTCGACCTATAGTCTTACACAATATACCCC
771 TTTACTATTCCTGGCGGACTCCATATGCTGCCATAATCGAGCTATGGTTTTACACAATATACCCC
* * * * * * * * * *
7026300 AAGTTTAACGTCCTAGCGGATTACTCCGTGCTTACTGTCCCGGCAGACTATACTAGTTGTCATAA
836 ATGTTTAACGTCCTGGCGGACTACT-CATGTTTACTGTCTCGGCGGACTATACTGGTTGCCATAG
* * *
7026365 TTGAGACATGGTCTTA
900 TAGAGCCATGGTATTA
7026381 AGTTTTCT
1 AGTTTTCT
7026389 TCTTTGTAAC
Statistics
Matches: 3078, Mismatches: 508, Indels: 278
0.80 0.13 0.07
Matches are distributed among these distances:
897 38 0.01
900 1 0.00
903 1 0.00
911 2 0.00
913 4 0.00
915 12 0.00
916 107 0.03
917 473 0.15
918 586 0.19
919 258 0.08
920 352 0.11
921 7 0.00
922 10 0.00
923 2 0.00
924 4 0.00
925 1 0.00
926 1 0.00
927 1 0.00
928 2 0.00
929 1 0.00
930 3 0.00
931 5 0.00
933 46 0.01
934 15 0.00
935 4 0.00
936 1 0.00
937 111 0.04
938 48 0.02
939 10 0.00
940 190 0.06
942 1 0.00
943 128 0.04
944 533 0.17
945 7 0.00
946 111 0.04
947 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (915 bp):
AGTTTTCTGCTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCACATTTTTCTCAAGCTTTAC
TTTAATAACTGCTTTGTTTTCCATTTCCATGTCCATTTCTTTTACTTTGAGCATGAGTAGTTAAA
CCTCAAGGAAGGTTGGTTGATGGAGATATGGGTAAACTAAAACCTTTGGACAAAAGAATAAATCG
AATAGACCTTAGAACATAGGTAGTGACACCCTAAGGGAATATCTAGACAAGTGAGACCAAAAGGT
AATCTTGTCATGCACCTGTTCATTAGTCTCGGATTAACTAGTGAGATCGAAAGATAAATCGTAGA
TAATTCGTCTAAGTCGATAAAATTGAGATCAGAAGATAAAATGGAGCCACTTAGTAATTTACACG
ATTTAAGTCCCTTGTTTGAGGATCGGTGAACCACATCGAAGTCAACCAACCACCATTAGTTATTT
ATTGGATAGTCCCATTTTTTACATTATTTGCAATTTAGTCCTTAGAGTAGCATATCTAATTTTCT
TGCAATATTTTCTTGTTATGAATTGTCGTACTATAAAATTGTAGTAGTAGCCACTTAGACTCTAT
TATGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGGGTTTAACCCTTGGAATACTTTGTGTT
CCATCGGAACTATAAATATTACAAATGACCTATACGCTTGCAGTAAAACCAGGCTTTAAAAAATT
GTTTTATAAGTTTTTTTTTTAATGCGCACATGCGAAGCCGGTCAACTACCCCATATTTACTATTC
CTGGCGGACTCCATATGCTGCCATAATCGAGCTATGGTTTTACACAATATACCCCATGTTTAACG
TCCTGGCGGACTACTCATGTTTACTGTCTCGGCGGACTATACTGGTTGCCATAGTAGAGCCATGG
TATTA
Found at i:7035039 original size:18 final size:19
Alignment explanation
Indices: 7035011--7035047 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
7035001 TTATTCCCAG
*
7035011 TTCCATCTTCGTTCTCAAC
1 TTCCATCTTCGTTATCAAC
7035030 TTCC-TCTTCGTTATCAAC
1 TTCCATCTTCGTTATCAAC
7035048 CATAGTTGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.16, C:0.35, G:0.05, T:0.43
Consensus pattern (19 bp):
TTCCATCTTCGTTATCAAC
Found at i:7037520 original size:31 final size:26
Alignment explanation
Indices: 7037455--7037519 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
7037445 ATTGTAGATA
*
7037455 AATATTATATTAATTTAATAATATTT
1 AATATTAAATTAATTTAATAATATTT
*
7037481 AATATTAAATTAAATTTAATTATA-TT
1 AATATTAAATT-AATTTAATAATATTT
7037507 AAT-TTAATATTAA
1 AATATTAA-ATTAA
7037520 AGTGATTAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 6 0.17
26 18 0.51
27 11 0.31
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
AATATTAAATTAATTTAATAATATTT
Found at i:7037665 original size:25 final size:27
Alignment explanation
Indices: 7037626--7037675 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
7037616 TTGTAGAGAG
7037626 AAAATTCTCTAGAGAAATTATTTTAGA
1 AAAATTCTCTAGAGAAATTATTTTAGA
* *
7037653 AAAATT-T-TAGAGATATTTTTTTA
1 AAAATTCTCTAGAGAAATTATTTTA
7037676 TTTATAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 14 0.67
26 1 0.05
27 6 0.29
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (27 bp):
AAAATTCTCTAGAGAAATTATTTTAGA
Found at i:7043322 original size:18 final size:19
Alignment explanation
Indices: 7043299--7043339 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
7043289 TTCGCAATTT
7043299 ATTTTTATTATTT-TA-AAA
1 ATTTTTA-TATTTATATAAA
7043317 ATTTTTATATTTATATAAA
1 ATTTTTATATTTATATAAA
7043336 ATTT
1 ATTT
7043340 CAAAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.24
18 9 0.43
19 7 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTTATATTTATATAAA
Found at i:7043364 original size:20 final size:21
Alignment explanation
Indices: 7043331--7043370 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
7043321 TTATATTTAT
7043331 ATAAAATTTCAAAA-AAAAAC
1 ATAAAATTTCAAAATAAAAAC
7043351 ATAAAA-TTCTAAAATAAAAA
1 ATAAAATTTC-AAAATAAAAA
7043371 AAAACTTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.17
20 10 0.56
21 5 0.28
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (21 bp):
ATAAAATTTCAAAATAAAAAC
Found at i:7043814 original size:16 final size:16
Alignment explanation
Indices: 7043789--7043828 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
7043779 TTCGTTCGCT
*
7043789 GTAATAGAATAGATGC
1 GTAATAGAATAGAGGC
*
7043805 GTAATGGAATAGAGGC
1 GTAATAGAATAGAGGC
7043821 GTAATAGA
1 GTAATAGA
7043829 TAATTCTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.30, T:0.23
Consensus pattern (16 bp):
GTAATAGAATAGAGGC
Found at i:7043901 original size:44 final size:47
Alignment explanation
Indices: 7043805--7043902 Score: 132
Period size: 44 Copynumber: 2.2 Consensus size: 47
7043795 GAATAGATGC
* * *
7043805 GTAATGGAATAGAGGCGTAATAGATAATTCTTTTGTTTGGTTGAATA
1 GTAATAGAATAGAGGCGTAATAGATAACTCTTATGTTTGGTTGAATA
*
7043852 G-AATAGAATAGAGGTGTAATAG-T-ACTCTTATGTTTGGTTGAAT-
1 GTAATAGAATAGAGGCGTAATAGATAACTCTTATGTTTGGTTGAATA
7043895 GTAATAGA
1 GTAATAGA
7043903 GCTGTAATAG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
43 1 0.02
44 24 0.52
45 1 0.02
46 19 0.41
47 1 0.02
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.37
Consensus pattern (47 bp):
GTAATAGAATAGAGGCGTAATAGATAACTCTTATGTTTGGTTGAATA
Found at i:7045172 original size:10 final size:10
Alignment explanation
Indices: 7045157--7045187 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
7045147 GATACCATCA
7045157 AGAAACATAC
1 AGAAACATAC
7045167 AGAAACATAC
1 AGAAACATAC
*
7045177 AGAGACATAC
1 AGAAACATAC
7045187 A
1 A
7045188 AAATATAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.58, C:0.19, G:0.13, T:0.10
Consensus pattern (10 bp):
AGAAACATAC
Found at i:7045224 original size:27 final size:25
Alignment explanation
Indices: 7045169--7045259 Score: 112
Period size: 25 Copynumber: 3.6 Consensus size: 25
7045159 AAACATACAG
*
7045169 AAACATACAGAGACATACAA-AATAT
1 AAACATACAGAAACATA-AAGAATAT
* *
7045194 AAACATACAAAAACGTAAATTGAATAT
1 AAACATACAGAAACATAAA--GAATAT
*
7045221 AAACATACAGAAACATACAGAATAT
1 AAACATACAGAAACATAAAGAATAT
7045246 AAACATACAGAAAC
1 AAACATACAGAAAC
7045260 CATTTCCAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
24 2 0.04
25 34 0.60
27 21 0.37
ACGTcount: A:0.60, C:0.15, G:0.08, T:0.16
Consensus pattern (25 bp):
AAACATACAGAAACATAAAGAATAT
Found at i:7049242 original size:1 final size:1
Alignment explanation
Indices: 7049236--7049267 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
7049226 GGTACATCAC
7049236 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7049268 GTGTTTTCTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:7060754 original size:6 final size:6
Alignment explanation
Indices: 7060727--7060804 Score: 50
Period size: 6 Copynumber: 12.5 Consensus size: 6
7060717 AGTTTATTTG
* * * * * *
7060727 TTTTCT TTTTAA TTTTAA TTTTATT TTTTAT GTTTAT GTTTAT TTTTCT
1 TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT
*
7060776 TTTTAAT TGTTT-T GTTTTAG TTTTAT TTT
1 TTTT-AT T-TTTAT -TTTTAT TTTTAT TTT
7060805 CTTGTACTTC
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
6 47 0.81
7 8 0.14
8 3 0.05
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:7060762 original size:25 final size:25
Alignment explanation
Indices: 7060738--7060804 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
7060728 TTTCTTTTTA
*
7060738 ATTTTAATTTTATTTTTTA-TGTTT
1 ATTTTAATTTTATTTTTAATTGTTT
* *
7060762 ATGTTTATTTTTCTTTTTAATTGTTTT
1 AT-TTTAATTTTATTTTTAATTG-TTT
* *
7060789 GTTTTAGTTTTATTTT
1 ATTTTAATTTTATTTT
7060805 CTTGTACTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 2 0.06
25 14 0.41
26 14 0.41
27 4 0.12
ACGTcount: A:0.16, C:0.01, G:0.07, T:0.75
Consensus pattern (25 bp):
ATTTTAATTTTATTTTTAATTGTTT
Found at i:7063299 original size:13 final size:13
Alignment explanation
Indices: 7063281--7063305 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7063271 TTAATCAACA
7063281 TAAAGTCAGTTGC
1 TAAAGTCAGTTGC
7063294 TAAAGTCAGTTG
1 TAAAGTCAGTTG
7063306 TTCTTACTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (13 bp):
TAAAGTCAGTTGC
Found at i:7067211 original size:42 final size:42
Alignment explanation
Indices: 7067164--7067261 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 42
7067154 TCTTAGATGT
* *
7067164 GGTCTTACATGTAATCAAATAACGATGCCATTGTCC-AGATAG
1 GGTCTTACATGTAATCAAAT-ACGATGCCAATGTCCTAGACAG
* *
7067206 GGTCTTACATGTAATCATATACGATGCCAATGTCCTAGACAT
1 GGTCTTACATGTAATCAAATACGATGCCAATGTCCTAGACAG
*
7067248 GGTCTTACACGTAA
1 GGTCTTACATGTAA
7067262 ATCTCAAATC
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 14 0.28
42 36 0.72
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATACGATGCCAATGTCCTAGACAG
Found at i:7069087 original size:21 final size:20
Alignment explanation
Indices: 7069037--7069092 Score: 51
Period size: 21 Copynumber: 2.8 Consensus size: 20
7069027 TCTTTGCAAA
*
7069037 ATAAGAGTATCGATAATTATT
1 ATAA-AGTATCGATAATTATG
* * *
7069058 TTAAGGTATCGATACTTTATG
1 ATAAAGTATCGATA-ATTATG
7069079 ATAAAGTAT-GATAA
1 ATAAAGTATCGATAA
7069093 AGTATCAATA
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.38
Consensus pattern (20 bp):
ATAAAGTATCGATAATTATG
Found at i:7084575 original size:35 final size:35
Alignment explanation
Indices: 7084529--7084596 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
7084519 AAGATAATTC
7084529 AAATTTAAAATAAAGTAGCACTTATCGACATTTTT
1 AAATTTAAAATAAAGTAGCACTTATCGACATTTTT
7084564 AAATTTAAAATAAAGTAGCACTTATCGACATTT
1 AAATTTAAAATAAAGTAGCACTTATCGACATTT
7084597 CCCCAATCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (35 bp):
AAATTTAAAATAAAGTAGCACTTATCGACATTTTT
Found at i:7088746 original size:19 final size:19
Alignment explanation
Indices: 7088718--7088754 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7088708 GACAGATTTC
*
7088718 TTTTGATTTTTTGATTTTA
1 TTTTGATTTTTTCATTTTA
*
7088737 TTTTGTTTTTTTCATTTT
1 TTTTGATTTTTTCATTTT
7088755 TGGCTATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.03, G:0.08, T:0.78
Consensus pattern (19 bp):
TTTTGATTTTTTCATTTTA
Found at i:7094240 original size:6 final size:6
Alignment explanation
Indices: 7094201--7094239 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
7094191 ATCCAAAAAA
* *
7094201 AAAATC AAAATC AAAATC AAAGTC AAAATG AAAAT- AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
7094240 AAGAGAGAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.69, C:0.10, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:7096572 original size:129 final size:129
Alignment explanation
Indices: 7096368--7096920 Score: 912
Period size: 129 Copynumber: 4.3 Consensus size: 129
7096358 CCTGACCAGT
*
7096368 AGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTGAGCAATAGCGGAGCAGATCAAAGACG
1 AGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAAGACG
* * *
7096433 GCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGTCACAAGTCCTATATCCCTGGCCAGC
66 GCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCTTATATCCCTGGTCAGC
* **
7096497 AGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCAGAGCAGATCAAAGATA
1 AGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAAGACG
* *
7096562 GTGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCTTATATCCCTGGTCAGC
66 GCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCTTATATCCCTGGTCAGC
* *
7096626 AGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAAG-T
1 AGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATC-AAAGAC
* *
7096690 GGCAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCTTATATTCCTGGTCAGC
65 GGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCTTATATCCCTGGTCAGC
* *
7096755 AGTGGAATAGGTT-GGAAATTACAGATCTTGTCTCCCTAAGCAATAGTGGAGTAGATCAAAGACG
1 AGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAAGACG
*
7096819 GCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCTTATATTCCTGGTCAGC
66 GCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCTTATATCCCTGGTCAGC
* * *
7096883 AGTGGAATAGGTTGGGAAATTACAAATCCTCTCTCCCT
1 AGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCT
7096921 GAAGTTGTAG
Statistics
Matches: 397, Mismatches: 24, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
127 4 0.01
128 118 0.30
129 271 0.68
130 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (129 bp):
AGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAAGACG
GCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCTTATATCCCTGGTCAGC
Found at i:7096958 original size:257 final size:258
Alignment explanation
Indices: 7096368--7096960 Score: 852
Period size: 257 Copynumber: 2.3 Consensus size: 258
7096358 CCTGACCAGT
* * * * *
7096368 AGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTGAGCAATAGCGGAGCAGATC-AAAG-A
1 AGTGGAATAGGTTGGGAAATTACAAATCCTCTCTCCCTAAGCAGTAGCGGAGCAGATCGAAAGTA
* * *
7096431 CGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGTCACAAGTCCTATATCCCTGGCCAG
66 --ACAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGCCAG
*
7096496 CAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCAGAGCAGATCAAAGAT
129 CAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCAGAGCAGATCAAAGAC
* *
7096561 AGTGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCTTATATCCCTGGTCAGC
194 AGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCTTATATCCCTGGTCAGC
* * * *
7096626 AGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAAGTG
1 AGTGGAATAGGTTGGGAAATTACAAATCCTCTCTCCCTAAGCAGTAGCGGAGCAGATCGAAAGTA
* * * *
7096691 GCAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCTTATATTCCTGGTCAGCA
66 ACAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGCCAGCA
** * *
7096756 GTGGAATAGGTT-GGAAATTACAGATCTTGTCTCCCTAAGCAATAGTGGAGTAGATCAAAGACGG
131 GTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCAGAGCAGATCAAAGACAG
*
7096820 CGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCTTATATTCCTGGTCAGC
196 CGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCTTATATCCCTGGTCAGC
** * * *
7096883 AGTGGAATAGGTTGGGAAATTACAAATCCTCTCTCCCTGAAGTTGTAGTGGAGCAGGT-TAAAGT
1 AGTGGAATAGGTTGGGAAATTACAAATCCTCTCTCCCT-AAGCAGTAGCGGAGCAGATCGAAAGT
* *
7096947 AATAGATCTTATCT
65 AACAAATCTTATCT
7096961 CTCTAAAGTT
Statistics
Matches: 304, Mismatches: 28, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
257 157 0.52
258 143 0.47
259 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (258 bp):
AGTGGAATAGGTTGGGAAATTACAAATCCTCTCTCCCTAAGCAGTAGCGGAGCAGATCGAAAGTA
ACAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGCCAGCA
GTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCAGAGCAGATCAAAGACAG
CGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCTTATATCCCTGGTCAGC
Found at i:7097042 original size:44 final size:44
Alignment explanation
Indices: 7096990--7097112 Score: 140
Period size: 44 Copynumber: 2.8 Consensus size: 44
7096980 TGGATCGCAT
* *
7096990 CAAGTCTTATCTCCGTGAGGTTACAGTGGAGCAGACTG-AGAAAA
1 CAAGTCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAG-AAA
* * * * * *
7097034 CAAGTCTTATCCCCCTGAAGTCACAGTGGGGTAGACCGAAGAAG
1 CAAGTCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAA
* *
7097078 CAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGA
1 CAAGTCTTATCTCCCTGAGGTTACAGTGGAGCAGA
7097113 TTGAACTCAA
Statistics
Matches: 63, Mismatches: 15, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
44 61 0.97
45 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (44 bp):
CAAGTCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAA
Found at i:7097133 original size:44 final size:44
Alignment explanation
Indices: 7097081--7097201 Score: 156
Period size: 44 Copynumber: 2.8 Consensus size: 44
7097071 GAAGAAGCAA
* *
7097081 ATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAACTCAATA-
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACT-AATAG
* *
7097125 ATAC-TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAG
1 AT-CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACTAATAG
* *
7097169 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
7097202 CGCATCAAGT
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
43 5 0.07
44 61 0.91
45 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACTAATAG
Found at i:7098669 original size:11 final size:11
Alignment explanation
Indices: 7098653--7098678 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7098643 TTTGATTATT
7098653 ATATTTTTAAA
1 ATATTTTTAAA
7098664 ATATTTTTAAA
1 ATATTTTTAAA
7098675 ATAT
1 ATAT
7098679 GACAATTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
ATATTTTTAAA
Found at i:7105312 original size:32 final size:32
Alignment explanation
Indices: 7105251--7105358 Score: 146
Period size: 32 Copynumber: 3.4 Consensus size: 32
7105241 GAATGGCTAC
* * *
7105251 AAGCCATAAGTA-CAGTATTATGATTGGCACA
1 AAGCCATCAGTAGTAGTAATATGATTGGCACA
*
7105282 AAGCCATCAGTAGTAGTAATATGATCGGCACA
1 AAGCCATCAGTAGTAGTAATATGATTGGCACA
* *
7105314 AAGCCATCAGTAATGGTAATATGATTGGCACA
1 AAGCCATCAGTAGTAGTAATATGATTGGCACA
*
7105346 AAGTCATCAGTAG
1 AAGCCATCAGTAG
7105359 CATCGCAGCA
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
31 11 0.16
32 56 0.84
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (32 bp):
AAGCCATCAGTAGTAGTAATATGATTGGCACA
Found at i:7105410 original size:25 final size:26
Alignment explanation
Indices: 7105364--7105412 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
7105354 AGTAGCATCG
*
7105364 CAGCAAGGCTGCCAGTAACAGTATCA
1 CAGCAAAGCTGCCAGTAACAGTATCA
7105390 CAGCAAAGCTG-CAGTAACAGTAT
1 CAGCAAAGCTGCCAGTAACAGTAT
7105413 ATGTGGCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.16
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAACAGTATCA
Found at i:7105444 original size:27 final size:27
Alignment explanation
Indices: 7105401--7105464 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
7105391 AGCAAAGCTG
7105401 CAGTAACAGTATATGTGGCCA-AGCCAC
1 CAGTAACAGTATATGTGG-CAGAGCCAC
*
7105428 CAGTAATAGTGAT-TGTGGCAGAGCCAC
1 CAGTAACAGT-ATATGTGGCAGAGCCAC
7105455 CAGT-ACAGTA
1 CAGTAACAGTA
7105465 CTTCCTCCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 1 0.03
26 6 0.18
27 24 0.73
28 2 0.06
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGTAACAGTATATGTGGCAGAGCCAC
Found at i:7105682 original size:24 final size:24
Alignment explanation
Indices: 7105540--7105685 Score: 184
Period size: 24 Copynumber: 6.1 Consensus size: 24
7105530 TCCGTCATAC
* **
7105540 AAATCACAGACAAATCTGTCATAC
1 AAATCACAGACAAATCAGTCATTT
* *
7105564 CAATAACAGACAAATCAGTCATTT
1 AAATCACAGACAAATCAGTCATTT
7105588 AAATCACAGACAAATCAGTCATTT
1 AAATCACAGACAAATCAGTCATTT
*
7105612 AAATCACAAACAAATCAGTCATTT
1 AAATCACAGACAAATCAGTCATTT
* * * *
7105636 ACATCTCGGACAAATCAATCATTT
1 AAATCACAGACAAATCAGTCATTT
* *
7105660 ACATCACAGACAAATCAATCATTT
1 AAATCACAGACAAATCAGTCATTT
7105684 AA
1 AA
7105686 CCTCAAGGGG
Statistics
Matches: 106, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 106 1.00
ACGTcount: A:0.46, C:0.23, G:0.07, T:0.25
Consensus pattern (24 bp):
AAATCACAGACAAATCAGTCATTT
Found at i:7105732 original size:26 final size:26
Alignment explanation
Indices: 7105703--7105843 Score: 115
Period size: 27 Copynumber: 5.3 Consensus size: 26
7105693 GGGTAAAATA
*
7105703 GTCATTTACCCT-CTAGGATCATTACG
1 GTCATTTACCCTAC-AGGAGCATTACG
*
7105729 GTCATTTTACCCTACAGGGGCATTACG
1 GTCA-TTTACCCTACAGGAGCATTACG
* *
7105756 GTTATTTCACCCTACAAGG-GCATTAAG
1 GTCATTT-ACCCTAC-AGGAGCATTACG
* * * **
7105783 ATCATTTTACCCTATAGGGGCATTATA
1 GTCA-TTTACCCTACAGGAGCATTACG
*
7105810 GTCATTTTACCCTACAGGGGCATTACG
1 GTCA-TTTACCCTACAGGAGCATTACG
*
7105837 GTTATTT
1 GTCATTT
7105844 TACAAATATT
Statistics
Matches: 95, Mismatches: 14, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
26 13 0.14
27 75 0.79
28 7 0.07
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (26 bp):
GTCATTTACCCTACAGGAGCATTACG
Found at i:7105741 original size:27 final size:27
Alignment explanation
Indices: 7105722--7105846 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
7105712 CCTCTAGGAT
7105722 CATTACGGTCATTTTACCCTACAGGGG
1 CATTACGGTCATTTTACCCTACAGGGG
* * *
7105749 CATTACGGTTATTTCACCCTACAAGGG
1 CATTACGGTCATTTTACCCTACAGGGG
* * *
7105776 CATTAAGATCATTTTACCCTATAGGGG
1 CATTACGGTCATTTTACCCTACAGGGG
**
7105803 CATTATAGTCATTTTACCCTACAGGGG
1 CATTACGGTCATTTTACCCTACAGGGG
*
7105830 CATTACGGTTATTTTAC
1 CATTACGGTCATTTTAC
7105847 AAATATTGGT
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
CATTACGGTCATTTTACCCTACAGGGG
Found at i:7106219 original size:17 final size:17
Alignment explanation
Indices: 7106197--7106238 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
7106187 TTATCTGTGT
7106197 GGCCCACAAGCCCACTA
1 GGCCCACAAGCCCACTA
* *
7106214 GGCCCATAAGCCCACTG
1 GGCCCACAAGCCCACTA
7106231 GGCCCACA
1 GGCCCACA
7106239 CAACCCATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.26, C:0.45, G:0.21, T:0.07
Consensus pattern (17 bp):
GGCCCACAAGCCCACTA
Found at i:7112487 original size:33 final size:33
Alignment explanation
Indices: 7112431--7112544 Score: 147
Period size: 33 Copynumber: 3.4 Consensus size: 33
7112421 CATTTTCAGC
* * * *
7112431 CCAACCAAACACACTAGATGCTCACACGAGCCAAT
1 CCAACC-AACACACCA-ATGCTCATAAGAGCTAAT
**
7112466 CCCTCCAACACACCAATGCTCATAAGAGCTAAT
1 CCAACCAACACACCAATGCTCATAAGAGCTAAT
*
7112499 CCAACCAACACACCAATACTCATAAGAGCTAAT
1 CCAACCAACACACCAATGCTCATAAGAGCTAAT
7112532 CCAACCAACACAC
1 CCAACCAACACAC
7112545 TAAACAGAGT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
33 58 0.83
34 8 0.11
35 4 0.06
ACGTcount: A:0.41, C:0.38, G:0.08, T:0.13
Consensus pattern (33 bp):
CCAACCAACACACCAATGCTCATAAGAGCTAAT
Found at i:7113494 original size:21 final size:21
Alignment explanation
Indices: 7113468--7113509 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7113458 AAAGTTACCA
7113468 TGTTTTAATTT-CACTTTAATT
1 TGTTTTAATTTCCA-TTTAATT
7113489 TGTTTTAATTTCCATTTAATT
1 TGTTTTAATTTCCATTTAATT
7113510 ATAAAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.24, C:0.10, G:0.05, T:0.62
Consensus pattern (21 bp):
TGTTTTAATTTCCATTTAATT
Found at i:7125046 original size:17 final size:19
Alignment explanation
Indices: 7125024--7125069 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
7125014 CGAGCAAACC
*
7125024 AATAAGAAAATAAA-A-AA
1 AATAAGAAAAGAAATACAA
7125041 AATAAGATAAAGAAATACAA
1 AATAAGA-AAAGAAATACAA
7125061 AAT-AGAAAA
1 AATAAGAAAA
7125070 AAACTGATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 7 0.28
18 9 0.36
19 4 0.16
20 5 0.20
ACGTcount: A:0.76, C:0.02, G:0.09, T:0.13
Consensus pattern (19 bp):
AATAAGAAAAGAAATACAA
Found at i:7125719 original size:20 final size:19
Alignment explanation
Indices: 7125687--7125726 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
7125677 ATGTGGACCA
7125687 CCTTTTTTTAATT-TTTTT
1 CCTTTTTTTAATTCTTTTT
7125705 CCTTTTTTTCGAATTCTTTTT
1 CCTTTTTTT--AATTCTTTTT
7125726 C
1 C
7125727 AAATCTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.47
20 4 0.21
21 6 0.32
ACGTcount: A:0.10, C:0.17, G:0.03, T:0.70
Consensus pattern (19 bp):
CCTTTTTTTAATTCTTTTT
Found at i:7131742 original size:115 final size:117
Alignment explanation
Indices: 7131605--7131841 Score: 453
Period size: 115 Copynumber: 2.1 Consensus size: 117
7131595 AAAAATACAT
7131605 TTAA-TTTTTATATCAATTTTTTATAAATTTATTACTTATATAATTAATATATTTAAGAAAAAAA
1 TTAACTTTTTATATCAATTTTTTATAAATTTATTACTTATATAATTAATATATTTAAGAAAAAAA
7131669 TCCATTCTTTTAACTGTCATTGAAATATTTTCACTTCCTAAAGATATTTGAA
66 TCCATTCTTTTAACTGTCATTGAAATATTTTCACTTCCTAAAGATATTTGAA
7131721 TTAACTTTTTATATC-A-TTTTTATAAATTTATTACTTATATAATTAATATATTTAAGAAAAAAA
1 TTAACTTTTTATATCAATTTTTTATAAATTTATTACTTATATAATTAATATATTTAAGAAAAAAA
7131784 TCCATTCTTTTAACTGTCATTGAAATATTTTCACTTCCTAAAGATATTTGAA
66 TCCATTCTTTTAACTGTCATTGAAATATTTTCACTTCCTAAAGATATTTGAA
7131836 TTAACT
1 TTAACT
7131842 AAATTTTGCT
Statistics
Matches: 120, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
115 105 0.88
116 5 0.04
117 10 0.08
ACGTcount: A:0.38, C:0.10, G:0.04, T:0.47
Consensus pattern (117 bp):
TTAACTTTTTATATCAATTTTTTATAAATTTATTACTTATATAATTAATATATTTAAGAAAAAAA
TCCATTCTTTTAACTGTCATTGAAATATTTTCACTTCCTAAAGATATTTGAA
Found at i:7134416 original size:41 final size:41
Alignment explanation
Indices: 7134362--7134451 Score: 171
Period size: 41 Copynumber: 2.2 Consensus size: 41
7134352 GCTTATGTTA
7134362 AAGCTCAAAAGAGTAAGGCTTACTTCAAGAGATTTCAAGTT
1 AAGCTCAAAAGAGTAAGGCTTACTTCAAGAGATTTCAAGTT
7134403 AAGCTCAAAAGAGTAAGGCTTACTTCAAGAGATTTCAAGTT
1 AAGCTCAAAAGAGTAAGGCTTACTTCAAGAGATTTCAAGTT
*
7134444 AAGTTCAA
1 AAGCTCAA
7134452 GAGAAGGCGA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (41 bp):
AAGCTCAAAAGAGTAAGGCTTACTTCAAGAGATTTCAAGTT
Found at i:7134451 original size:21 final size:21
Alignment explanation
Indices: 7134385--7134455 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
7134375 TAAGGCTTAC
7134385 TTCAAGAGATTTCAAGTTAAG
1 TTCAAGAGATTTCAAGTTAAG
* * * *
7134406 CTCAAAAGA-GT-AAGGCTT-AC
1 TTCAAGAGATTTCAA-G-TTAAG
7134426 TTCAAGAGATTTCAAGTTAAG
1 TTCAAGAGATTTCAAGTTAAG
7134447 TTCAAGAGA
1 TTCAAGAGA
7134456 AGGCGAGGTA
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
19 2 0.05
20 12 0.32
21 21 0.57
22 2 0.05
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (21 bp):
TTCAAGAGATTTCAAGTTAAG
Found at i:7142517 original size:38 final size:38
Alignment explanation
Indices: 7142475--7142593 Score: 141
Period size: 38 Copynumber: 3.0 Consensus size: 38
7142465 GCCCATATTT
7142475 GATTAAAAATAAAAAATATATATTTAATATATAATTCG
1 GATTAAAAATAAAAAATATATATTTAATATATAATTCG
* ** * *
7142513 GATTAAAAGTCCAAAATATATATTTAATAAAAAGTATATT-T
1 GATTAAAAATAAAAAATATATATTTAAT--ATA-TA-ATTCG
7142554 GATTAAAAATAAAAATATATATATTTAATATATAATTCG
1 GATTAAAAATAAAAA-ATATATATTTAATATATAATTCG
7142593 G
1 G
7142594 GCTGGGCCAG
Statistics
Matches: 65, Mismatches: 10, Indels: 11
0.76 0.12 0.13
Matches are distributed among these distances:
38 28 0.43
39 3 0.05
40 4 0.06
41 14 0.22
42 16 0.25
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (38 bp):
GATTAAAAATAAAAAATATATATTTAATATATAATTCG
Found at i:7144053 original size:38 final size:38
Alignment explanation
Indices: 7144011--7144129 Score: 141
Period size: 38 Copynumber: 3.0 Consensus size: 38
7144001 GCCCATATTT
7144011 GATTAAAAATAAAAAATATATATTTAATATATAATTCG
1 GATTAAAAATAAAAAATATATATTTAATATATAATTCG
* ** * *
7144049 GATTAAAAGTCCAAAATATATATTTAATAAAAAGTATATT-T
1 GATTAAAAATAAAAAATATATATTTAAT--ATA-TA-ATTCG
7144090 GATTAAAAATAAAAATATATATATTTAATATATAATTCG
1 GATTAAAAATAAAAA-ATATATATTTAATATATAATTCG
7144129 G
1 G
7144130 GCTGGGCCAG
Statistics
Matches: 65, Mismatches: 10, Indels: 11
0.76 0.12 0.13
Matches are distributed among these distances:
38 28 0.43
39 3 0.05
40 4 0.06
41 14 0.22
42 16 0.25
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (38 bp):
GATTAAAAATAAAAAATATATATTTAATATATAATTCG
Found at i:7146083 original size:69 final size:69
Alignment explanation
Indices: 7145997--7146205 Score: 409
Period size: 69 Copynumber: 3.0 Consensus size: 69
7145987 TGTCTAGGTT
7145997 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
1 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
7146062 GCAA
66 GCAA
7146066 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
1 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
7146131 GCAA
66 GCAA
*
7146135 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGATAGAGT
1 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
7146200 GCAA
66 GCAA
7146204 AT
1 AT
7146206 TGAATTGTAA
Statistics
Matches: 139, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 139 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (69 bp):
ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
GCAA
Found at i:7147057 original size:21 final size:20
Alignment explanation
Indices: 7147031--7147097 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 20
7147021 CAATATTTTT
7147031 ATTTTTAATAAAAATTTTAAA
1 ATTTTTAAT-AAAATTTTAAA
** * *
7147052 ATTTTTGTTTATAATTTTAATG
1 ATTTTT-AATAAAATTTTAA-A
7147074 ATTTTTAATAAAA-TTTAAA
1 ATTTTTAATAAAATTTTAAA
7147093 ATTTT
1 ATTTT
7147098 AAAAAGGTTT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 5 0.14
20 5 0.14
21 19 0.53
22 7 0.19
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
ATTTTTAATAAAATTTTAAA
Found at i:7147388 original size:30 final size:29
Alignment explanation
Indices: 7147342--7147419 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 29
7147332 TTTTTCCAAT
* *
7147342 TTTTAAGGGCTAAAAATATTTATTTT-TAGC
1 TTTTAAGGGCCAAAAAT-TTT-TTTTATAAC
*
7147372 TTTTAAGGGCCCAAAATTTTTTTTACTAAC
1 TTTTAAGGGCCAAAAATTTTTTTTA-TAAC
7147402 TTTTAAGGGACCTAAAAA
1 TTTTAAGGG-CC-AAAAA
7147420 AAATTTTCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 4 0.10
29 3 0.08
30 27 0.68
31 2 0.05
32 4 0.10
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.41
Consensus pattern (29 bp):
TTTTAAGGGCCAAAAATTTTTTTTATAAC
Done.