Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35726063
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1821929 characters in sequence are not A, C, G, or T
File 23 of 109
Found at i:7813270 original size:26 final size:26
Alignment explanation
Indices: 7813207--7813268 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
7813197 CATATTTTCT
*
7813207 TTTCTTTCTTTCTTGTTCTCTCTTAT
1 TTTCTTTCTTTCTTGTTCTCTCTTAG
* *
7813233 TTTCTTCCTTTCTT-TTTTCT-TTGAG
1 TTTCTTTCTTTCTTGTTCTCTCTT-AG
7813258 TTTCTTTCTTT
1 TTTCTTTCTTT
7813269 TCCCTTTAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 2 0.06
25 16 0.52
26 13 0.42
ACGTcount: A:0.03, C:0.21, G:0.05, T:0.71
Consensus pattern (26 bp):
TTTCTTTCTTTCTTGTTCTCTCTTAG
Found at i:7813682 original size:31 final size:31
Alignment explanation
Indices: 7813644--7813718 Score: 141
Period size: 31 Copynumber: 2.4 Consensus size: 31
7813634 GCGTGTGTGA
7813644 GGCCGTGTGGGCCACACGAGCTAGCTAGTTG
1 GGCCGTGTGGGCCACACGAGCTAGCTAGTTG
*
7813675 GGCCGTGTAGGCCACACGAGCTAGCTAGTTG
1 GGCCGTGTGGGCCACACGAGCTAGCTAGTTG
7813706 GGCCGTGTGGGCC
1 GGCCGTGTGGGCC
7813719 CATTTTCCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.15, C:0.27, G:0.40, T:0.19
Consensus pattern (31 bp):
GGCCGTGTGGGCCACACGAGCTAGCTAGTTG
Found at i:7814308 original size:34 final size:34
Alignment explanation
Indices: 7814269--7814333 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
7814259 TTCTGATATG
* *
7814269 ATATGACATTTTGGTATGATATATGCTTCTGAAA
1 ATATGACATTCTGGTATAATATATGCTTCTGAAA
* *
7814303 ATATGACATTCTGGTCTAATATATGTTTCTG
1 ATATGACATTCTGGTATAATATATGCTTCTG
7814334 GTGATGCGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (34 bp):
ATATGACATTCTGGTATAATATATGCTTCTGAAA
Found at i:7814625 original size:31 final size:30
Alignment explanation
Indices: 7814566--7814627 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 30
7814556 ATTATTTTTA
*
7814566 ACTAAGTTTTTTGGATTTTTTTGTTTTTGG
1 ACTAAGTTTTTTGGATTTTTTTGGTTTTGG
7814596 ACTAAG-TTTTTGGATTTGATTTTGGTTTTGG
1 ACTAAGTTTTTTGGATTT--TTTTGGTTTTGG
7814627 A
1 A
7814628 TATTGTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 11 0.38
30 6 0.21
31 12 0.41
ACGTcount: A:0.16, C:0.03, G:0.23, T:0.58
Consensus pattern (30 bp):
ACTAAGTTTTTTGGATTTTTTTGGTTTTGG
Found at i:7817699 original size:9 final size:9
Alignment explanation
Indices: 7817685--7817715 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7817675 GTTAAACGAA
7817685 TCGAGTTAT
1 TCGAGTTAT
*
7817694 TCGAGTTAA
1 TCGAGTTAT
7817703 TCGAGTTAT
1 TCGAGTTAT
7817712 TCGA
1 TCGA
7817716 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:7817786 original size:9 final size:9
Alignment explanation
Indices: 7817769--7817805 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
7817759 TGAGTTTTCA
7817769 AATTCGAAT
1 AATTCGAAT
*
7817778 AACTCGAAT
1 AATTCGAAT
7817787 AATTCGAAT
1 AATTCGAAT
7817796 AATTCGAAT
1 AATTCGAAT
7817805 A
1 A
7817806 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:7818960 original size:86 final size:87
Alignment explanation
Indices: 7818849--7819021 Score: 339
Period size: 86 Copynumber: 2.0 Consensus size: 87
7818839 AGAAGTGAAT
7818849 GGAACTTATTGTTGTTATTGGCAAATAGATAAGTGGAAGATGGATAGTCCAAAATGTTGCTAAAT
1 GGAACTTATTGTTGTTATTGGCAAATAGATAAGTGGAAGATGGATAGTCCAAAATGTTGCTAAAT
7818914 GTTTATTCCTGAAACAAAATGA
66 GTTTATTCCTGAAACAAAATGA
7818936 GGAACTTATT-TTGTTATTGGCAAATAGATAAGTGGAAGATGGATAGTCCAAAATGTTGCTAAAT
1 GGAACTTATTGTTGTTATTGGCAAATAGATAAGTGGAAGATGGATAGTCCAAAATGTTGCTAAAT
7819000 GTTTATTCCTGAAACAAAATGA
66 GTTTATTCCTGAAACAAAATGA
7819022 TTAATGGTTT
Statistics
Matches: 86, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
86 76 0.88
87 10 0.12
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.32
Consensus pattern (87 bp):
GGAACTTATTGTTGTTATTGGCAAATAGATAAGTGGAAGATGGATAGTCCAAAATGTTGCTAAAT
GTTTATTCCTGAAACAAAATGA
Found at i:7829779 original size:40 final size:39
Alignment explanation
Indices: 7829651--7829786 Score: 125
Period size: 40 Copynumber: 3.4 Consensus size: 39
7829641 GTTTGGACAA
*
7829651 AAAACGCCGCTAAAAATTGAGTATTAGCGGCGCTTTACAT--
1 AAAACGCCGCTAAAAA-TGAGCATTAGCGGCG-TTT-CATGG
* * *
7829691 AAAACGCCGCTAAAGATCGAGCATCAGCAGCGTTTCCA-GG
1 AAAACGCCGCTAAAAAT-GAGCATTAGCGGCGTTT-CATGG
* * *
7829731 AAAGCGCCGCTAAAAATGAGCATTAGTGGCGTTTCTTGG
1 AAAACGCCGCTAAAAATGAGCATTAGCGGCGTTTCATGG
*
7829770 AAAAACGCCGCAAAAAA
1 -AAAACGCCGCTAAAAA
7829787 CCTAAGCCCA
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
38 1 0.01
39 22 0.28
40 55 0.71
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (39 bp):
AAAACGCCGCTAAAAATGAGCATTAGCGGCGTTTCATGG
Found at i:7829899 original size:41 final size:40
Alignment explanation
Indices: 7829811--7829901 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 40
7829801 CATCGCCTTC
*
7829811 AAAAA-CGCCGCTAATGCTCAGGCTTTTAGCGGCGTTTAT
1 AAAAAGCGCCGCTAATGCTCAGGCTTTTAGCGACGTTTAT
* * * *
7829850 AAAGAAGCGTCGCTAATGCTCTGGCTTTTAGCTACGTTTTT
1 AAA-AAGCGCCGCTAATGCTCAGGCTTTTAGCGACGTTTAT
7829891 GAAAAAGCGCC
1 -AAAAAGCGCC
7829902 TCAAAAACAT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
39 3 0.07
40 2 0.05
41 35 0.81
42 3 0.07
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (40 bp):
AAAAAGCGCCGCTAATGCTCAGGCTTTTAGCGACGTTTAT
Found at i:7830692 original size:20 final size:20
Alignment explanation
Indices: 7830659--7830721 Score: 74
Period size: 19 Copynumber: 3.1 Consensus size: 20
7830649 TTTGATTTCT
*
7830659 TTTTTCCTCCCTTTACACTGA
1 TTTTTCC-CACTTTACACTGA
** *
7830680 TTTTTTTCTCTTTACACTGA
1 TTTTTCCCACTTTACACTGA
7830700 -TTTTCCCACTTTACACTGA
1 TTTTTCCCACTTTACACTGA
7830719 TTT
1 TTT
7830722 CCTCCCTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
19 16 0.46
20 14 0.40
21 5 0.14
ACGTcount: A:0.16, C:0.27, G:0.05, T:0.52
Consensus pattern (20 bp):
TTTTTCCCACTTTACACTGA
Found at i:7830730 original size:19 final size:20
Alignment explanation
Indices: 7830660--7830730 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
7830650 TTGATTTCTT
7830660 TTTTCCTCCCTTTACACTGA
1 TTTTCCTCCCTTTACACTGA
** *
7830680 TTTTTTTCTCTTTACACTGA
1 TTTTCCTCCCTTTACACTGA
*
7830700 TTTTCC-CACTTTACACTGA
1 TTTTCCTCCCTTTACACTGA
7830719 -TTTCCTCCCTTT
1 TTTTCCTCCCTTT
7830731 TTTATGAATG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
18 5 0.12
19 17 0.40
20 21 0.49
ACGTcount: A:0.14, C:0.31, G:0.04, T:0.51
Consensus pattern (20 bp):
TTTTCCTCCCTTTACACTGA
Found at i:7852773 original size:19 final size:18
Alignment explanation
Indices: 7852736--7852786 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
7852726 TTTATGCCAC
7852736 TAATTTTTATATTATATTAA
1 TAATTTTTA-ATTATATT-A
7852756 TAATTTTTAATTGA-ATTA
1 TAATTTTTAATT-ATATTA
*
7852774 TTATATTTTAATT
1 TAAT-TTTTAATT
7852787 CATCTATATC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 4 0.14
19 14 0.50
20 10 0.36
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TAATTTTTAATTATATTA
Found at i:7866465 original size:21 final size:21
Alignment explanation
Indices: 7866441--7866503 Score: 71
Period size: 19 Copynumber: 3.2 Consensus size: 21
7866431 AGAAGGTATG
7866441 TATCCAAAACTTGATTTAATA
1 TATCCAAAACTTGATTTAATA
* * *
7866462 TAT-C-AAGCTT-ACTT-ATG
1 TATCCAAAACTTGATTTAATA
7866479 TATCCAAAACTTGATTTAATA
1 TATCCAAAACTTGATTTAATA
7866500 TATC
1 TATC
7866504 AAGCTTGCTT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
17 5 0.16
18 4 0.12
19 10 0.31
20 4 0.12
21 9 0.28
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.40
Consensus pattern (21 bp):
TATCCAAAACTTGATTTAATA
Found at i:7866488 original size:38 final size:38
Alignment explanation
Indices: 7866437--7866509 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
7866427 CACGAGAAGG
7866437 TATGTATCCAAAACTTGATTTAATATATCAAGCTTACT
1 TATGTATCCAAAACTTGATTTAATATATCAAGCTTACT
7866475 TATGTATCCAAAACTTGATTTAATATATCAAGCTT
1 TATGTATCCAAAACTTGATTTAATATATCAAGCTT
7866510 GCTTTTTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.40
Consensus pattern (38 bp):
TATGTATCCAAAACTTGATTTAATATATCAAGCTTACT
Found at i:7866796 original size:54 final size:54
Alignment explanation
Indices: 7866731--7867152 Score: 342
Period size: 54 Copynumber: 7.8 Consensus size: 54
7866721 CTCAATTCAC
* * * *
7866731 TACTTACAAGATTTTTCGAATCTTACAGCTTGCCGATTTAAGATTGCAGCCTTA
1 TACTTACAAGATTTTTCGAATCTTGCGGCTCGCCGATTTAAGATCGCAGCCTTA
* * * * * * *
7866785 TACTTATAAGATTTTCCAAATCTTGTGGTTTGTCGATTTAAGATCGCAGCCTTA
1 TACTTACAAGATTTTTCGAATCTTGCGGCTCGCCGATTTAAGATCGCAGCCTTA
* ** * ** * ** **
7866839 TACTTACAAGATTTTTTTGAATCTTATGGTTTACTGATTTAAGATCATAATCTTA
1 TACTTACAAGA-TTTTTCGAATCTTGCGGCTCGCCGATTTAAGATCGCAGCCTTA
* * * * *
7866894 TATTTACAAGATCTTTCGAATCTTGTGACTCGTCGATTTAAGATCGCAGCCTTA
1 TACTTACAAGATTTTTCGAATCTTGCGGCTCGCCGATTTAAGATCGCAGCCTTA
* * * * * * * * * * * * *
7866948 TACTTATAAGATCTTCCTAATATTGCAGTTTGCTGGTTTAAGATTGTAACCTTA
1 TACTTACAAGATTTTTCGAATCTTGCGGCTCGCCGATTTAAGATCGCAGCCTTA
* * * * *
7867002 TACTTACAAGATTTTTTGAGTCTTGCGGCTCACTGATTTAAG-TCGTAGCCTTA
1 TACTTACAAGATTTTTCGAATCTTGCGGCTCGCCGATTTAAGATCGCAGCCTTA
* * * * * * *
7867055 TACTTATAGGATTTTTCAAATCTTGTGACTCGCCAATTTAATATCGCAGCCTTA
1 TACTTACAAGATTTTTCGAATCTTGCGGCTCGCCGATTTAAGATCGCAGCCTTA
* *
7867109 TACTTACAAGATTTTTCGAATATTGCGGCTCGCCAATTTAAGAT
1 TACTTACAAGATTTTTCGAATCTTGCGGCTCGCCGATTTAAGAT
7867153 TGCAAGATTT
Statistics
Matches: 282, Mismatches: 84, Indels: 4
0.76 0.23 0.01
Matches are distributed among these distances:
53 40 0.14
54 200 0.71
55 42 0.15
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (54 bp):
TACTTACAAGATTTTTCGAATCTTGCGGCTCGCCGATTTAAGATCGCAGCCTTA
Found at i:7867151 original size:161 final size:163
Alignment explanation
Indices: 7866731--7867157 Score: 464
Period size: 163 Copynumber: 2.6 Consensus size: 163
7866721 CTCAATTCAC
* * ** * * *
7866731 TACTTACAAGATTTTTCGAATCTT-ACAGCTTGCCGATTTAAGATTGCAGCCTTATACTTATAAG
1 TACTTACAAGATCTTTCAAATCTTGTGA-CTCGCCAATTTAAGATCGCAGCCTTATACTTATAAG
* * * * *
7866795 ATTTTCCAAATCTTGTGGTTTGTCGATTTAAGATCGCAGCCTTATACTTACAAGATTTTTTTGAA
65 ATTTTCCAAATATTGCGGTTTGCCGATTTAAGATTGCAACCTTATACTTACAAGATTTTTTTGAA
* * * *
7866860 TCTTATGGTTTACTGATTTAAGATCATAATCTTA
130 TCTTACGGCTCACTGATTTAAGATCATAACCTTA
* * * *
7866894 TATTTACAAGATCTTTCGAATCTTGTGACTCGTCGATTTAAGATCGCAGCCTTATACTTATAAGA
1 TACTTACAAGATCTTTCAAATCTTGTGACTCGCCAATTTAAGATCGCAGCCTTATACTTATAAGA
* * * * * * *
7866959 TCTTCCTAATATTGCAGTTTGCTGGTTTAAGATTGTAACCTTATACTTACAAGA-TTTTTTGAGT
66 TTTTCCAAATATTGCGGTTTGCCGATTTAAGATTGCAACCTTATACTTACAAGATTTTTTTGAAT
* * *
7867023 CTTGCGGCTCACTGATTTAAG-TCGTAGCCTTA
131 CTTACGGCTCACTGATTTAAGATCATAACCTTA
* * * * *
7867055 TACTTATAGGATTTTTCAAATCTTGTGACTCGCCAATTTAATATCGCAGCCTTATACTTACAAGA
1 TACTTACAAGATCTTTCAAATCTTGTGACTCGCCAATTTAAGATCGCAGCCTTATACTTATAAGA
* * * * *
7867120 TTTTTCGAATATTGCGGCTCGCCAATTTAAGATTGCAA
66 TTTTCCAAATATTGCGGTTTGCCGATTTAAGATTGCAA
7867158 GATTTTTCAA
Statistics
Matches: 218, Mismatches: 45, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
161 92 0.42
162 26 0.12
163 99 0.45
164 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (163 bp):
TACTTACAAGATCTTTCAAATCTTGTGACTCGCCAATTTAAGATCGCAGCCTTATACTTATAAGA
TTTTCCAAATATTGCGGTTTGCCGATTTAAGATTGCAACCTTATACTTACAAGATTTTTTTGAAT
CTTACGGCTCACTGATTTAAGATCATAACCTTA
Found at i:7867241 original size:54 final size:54
Alignment explanation
Indices: 7867155--7867268 Score: 165
Period size: 54 Copynumber: 2.1 Consensus size: 54
7867145 TTTAAGATTG
* * * * **
7867155 CAAGATTTTTCAAATCTTGCAGTTTACTGATTTAAGATCCCAACCTTATACTTA
1 CAAGATTTTTAAAATCTTGCAGCTCACCGATTTAAGATAACAACCTTATACTTA
*
7867209 CAAGATTTTTAAAATCTTGCAGCTCACCGATTTAAGATAACAGCCTTATACTTA
1 CAAGATTTTTAAAATCTTGCAGCTCACCGATTTAAGATAACAACCTTATACTTA
7867263 CAAGAT
1 CAAGAT
7867269 GTCCATAATC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (54 bp):
CAAGATTTTTAAAATCTTGCAGCTCACCGATTTAAGATAACAACCTTATACTTA
Found at i:7867279 original size:54 final size:54
Alignment explanation
Indices: 7867166--7867281 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
7867156 AAGATTTTTC
* * * ** * **
7867166 AAATCTTGCAGTTTACTGATTTAAGATCCCAACCTTATACTTACAAGATTTTTA
1 AAATCTTGCAGCTCACCGATTTAAGATAACAACCTTATACTTACAAGATGTCCA
*
7867220 AAATCTTGCAGCTCACCGATTTAAGATAACAGCCTTATACTTACAAGATGTCCA
1 AAATCTTGCAGCTCACCGATTTAAGATAACAACCTTATACTTACAAGATGTCCA
*
7867274 TAATCTTG
1 AAATCTTG
7867282 TAGTTGTCGA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (54 bp):
AAATCTTGCAGCTCACCGATTTAAGATAACAACCTTATACTTACAAGATGTCCA
Found at i:7881964 original size:3 final size:3
Alignment explanation
Indices: 7881956--7881996 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7881946 GCTGAAGTAC
7881956 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7881997 AGGTAAAGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7885187 original size:29 final size:29
Alignment explanation
Indices: 7885154--7885209 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
7885144 AAAAGCCACT
7885154 TTTTTTAAAAAATTACCGAAATGGGCCGG
1 TTTTTTAAAAAATTACCGAAATGGGCCGG
** *
7885183 TTTTTTAATTATTTACCGAAATGGGCC
1 TTTTTTAAAAAATTACCGAAATGGGCC
7885210 ATTTTTCCCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (29 bp):
TTTTTTAAAAAATTACCGAAATGGGCCGG
Found at i:7885215 original size:29 final size:29
Alignment explanation
Indices: 7885148--7885215 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
7885138 ACCAAAAAAA
7885148 GCCACTTTTTTTAAAAAATTACCGAAATGG
1 GCCA-TTTTTTTAAAAAATTACCGAAATGG
** ** *
7885178 GCCGGTTTTTTAATTATTTACCGAAATGG
1 GCCATTTTTTTAAAAAATTACCGAAATGG
7885207 GCCATTTTT
1 GCCATTTTT
7885216 CCCGAAATCA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
29 28 0.90
30 3 0.10
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (29 bp):
GCCATTTTTTTAAAAAATTACCGAAATGG
Found at i:7885313 original size:11 final size:11
Alignment explanation
Indices: 7885294--7885324 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7885284 TCGCGCTGAC
*
7885294 GTGGACGCGAT
1 GTGGTCGCGAT
7885305 GTGGTCGCGAT
1 GTGGTCGCGAT
7885316 GTGGTCGCG
1 GTGGTCGCG
7885325 CGCGTGAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.10, C:0.19, G:0.48, T:0.23
Consensus pattern (11 bp):
GTGGTCGCGAT
Found at i:7885466 original size:22 final size:22
Alignment explanation
Indices: 7885441--7885510 Score: 113
Period size: 22 Copynumber: 3.2 Consensus size: 22
7885431 AAATTCAATA
7885441 TCAATTTCCTTCAAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
*
7885463 TCAATTCCCTTCAAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
* *
7885485 TCAATTTTCTTCCAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
7885507 TCAA
1 TCAA
7885511 ACTCTCAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (22 bp):
TCAATTTCCTTCAAAAATTCTC
Found at i:7885516 original size:30 final size:30
Alignment explanation
Indices: 7885482--7885540 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
7885472 TTCAAAAATT
* * *
7885482 CTCTCAATTTTCTTCCAAAATTCTCTCAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAAA
7885512 CTCTCAAATTCCTTCCAAAATCCTCTCAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAA
7885541 TTTCCTTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.36
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAAA
Found at i:7885517 original size:52 final size:51
Alignment explanation
Indices: 7885460--7885562 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
7885450 TTCAAAAATT
* * * *
7885460 CTCTC-AATTCCCTTCAAAAATTCTCTCAATTTTCTTCCAAAATTCTCTCAAA
1 CTCTCAAATT-CCTTCAAAAATCCTCTCAATTTCCTTCAAAAAATCT-TCAAA
*
7885512 CTCTCAAATTCCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTTCAAA
1 CTCTCAAATTCCTTCAAAAATCCTCTCAATTTCCTTCAAAAAATCTTCAAA
7885563 TCCATATTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 5 0.11
52 36 0.80
53 4 0.09
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.36
Consensus pattern (51 bp):
CTCTCAAATTCCTTCAAAAATCCTCTCAATTTCCTTCAAAAAATCTTCAAA
Found at i:7885561 original size:21 final size:22
Alignment explanation
Indices: 7885512--7885553 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7885502 TTCTCTCAAA
*
7885512 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCAAAAATC
*
7885534 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCAAAAA
7885554 ATCTTCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCAAAAATC
Found at i:7885652 original size:29 final size:30
Alignment explanation
Indices: 7885595--7885651 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
7885585 TTAAATTTCA
7885595 TTTTTTTAAGAAAATTTTAAAATTTTTTAT
1 TTTTTTTAAGAAAATTTTAAAATTTTTTAT
7885625 TTTTTTTAA-AATAATTTTAAAATTTTT
1 TTTTTTTAAGAA-AATTTTAAAATTTTT
7885652 AATATTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (30 bp):
TTTTTTTAAGAAAATTTTAAAATTTTTTAT
Found at i:7885779 original size:14 final size:15
Alignment explanation
Indices: 7885750--7885783 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7885740 AAATTTTAAA
7885750 TTTTATTTAAGATAT
1 TTTTATTTAAGATAT
*
7885765 TTTTATTTATG-TAT
1 TTTTATTTAAGATAT
7885779 TTTTA
1 TTTTA
7885784 GATATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTATTTAAGATAT
Found at i:7892253 original size:42 final size:45
Alignment explanation
Indices: 7892197--7892564 Score: 162
Period size: 45 Copynumber: 8.3 Consensus size: 45
7892187 CATTCCTACA
* * *
7892197 AACTCTTACGTGCGAATTTCTA-AATGTGGATTC-T-TATAT-GCT
1 AACTCATACATGCGAATTTCTAGAA-GTGGATTCATAGATATGGCT
* *
7892239 AACTCATACATGCGAACTTGTAGAAGTGGATTCATAGATATGGCT
1 AACTCATACATGCGAATTTCTAGAAGTGGATTCATAGATATGGCT
* * ** * *
7892284 AATTCATAGATGCGAA-TTCATA-ATAGAAGATTCATAGATATAGCA
1 AACTCATACATGCGAATTTC-TAGA-AGTGGATTCATAGATATGGCT
* *** * *
7892329 AACTCATACATGC-AGA-TTCATATAAGAATATTCATAAATATGGCG
1 AACTCATACATGCGA-ATTTC-TAGAAGTGGATTCATAGATATGGCT
* * **
7892374 AACTCATACATGC-AAATTCATAGTAGAAGATTCATAGATAT--CAT
1 AACTCATACATGCGAATTTC-TAGAAGTGGATTCATAGATATGGC-T
* * **
7892418 AAATTCATACATGCGGA-TTCATAGAAGAAGATTCATAGATATGG-T
1 -AACTCATACATGCGAATTTC-TAGAAGTGGATTCATAGATATGGCT
* ** *
7892463 GAACTCATA-ATAC-AGA-TTCATAGAAGAAGATTCATAGATATGGCG
1 -AACTCATACATGCGA-ATTTC-TAGAAGTGGATTCATAGATATGGCT
* *** *
7892508 AAATCATACATGC-AGA-TTCATA-ATAGAAAATTCATAGATATGGCG
1 AACTCATACATGCGA-ATTTC-TAGA-AGTGGATTCATAGATATGGCT
7892553 AACTCATACATG
1 AACTCATACATG
7892565 TGGATTGTGT
Statistics
Matches: 273, Mismatches: 35, Indels: 33
0.80 0.10 0.10
Matches are distributed among these distances:
42 26 0.10
43 4 0.01
44 48 0.18
45 193 0.71
46 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (45 bp):
AACTCATACATGCGAATTTCTAGAAGTGGATTCATAGATATGGCT
Found at i:7892316 original size:45 final size:45
Alignment explanation
Indices: 7892267--7892564 Score: 354
Period size: 45 Copynumber: 6.6 Consensus size: 45
7892257 TGTAGAAGTG
* * *
7892267 GATTCATAGATATGGCTAATTCATAGATGC-GAATTCATAATAGAA
1 GATTCATAGATATGGCGAACTCATACATGCAG-ATTCATAATAGAA
* *
7892312 GATTCATAGATATAGCAAACTCATACATGCAGATTCAT-ATAAGAA
1 GATTCATAGATATGGCGAACTCATACATGCAGATTCATAAT-AGAA
* * * *
7892357 TATTCATAAATATGGCGAACTCATACATGCAAATTCATAGTAGAA
1 GATTCATAGATATGGCGAACTCATACATGCAGATTCATAATAGAA
**** * *
7892402 GATTCATAGATATCATAAATTCATACATGCGGATTCATAGA-AGAA
1 GATTCATAGATATGGCGAACTCATACATGCAGATTCATA-ATAGAA
* *
7892447 GATTCATAGATATGGTGAACTCATA-ATACAGATTCATAGA-AGAA
1 GATTCATAGATATGGCGAACTCATACATGCAGATTCATA-ATAGAA
*
7892491 GATTCATAGATATGGCGAAATCATACATGCAGATTCATAATAGAA
1 GATTCATAGATATGGCGAACTCATACATGCAGATTCATAATAGAA
*
7892536 AATTCATAGATATGGCGAACTCATACATG
1 GATTCATAGATATGGCGAACTCATACATG
7892565 TGGATTGTGT
Statistics
Matches: 216, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
44 43 0.20
45 171 0.79
46 2 0.01
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (45 bp):
GATTCATAGATATGGCGAACTCATACATGCAGATTCATAATAGAA
Found at i:7892450 original size:14 final size:15
Alignment explanation
Indices: 7892433--7892547 Score: 62
Period size: 14 Copynumber: 7.8 Consensus size: 15
7892423 CATACATGCG
7892433 GATTCATAGA-AGAA
1 GATTCATAGATAGAA
**
7892447 GATTCATAGATATGGT
1 GATTCATAGATA-GAA
* *
7892463 GAACTCATA-ATA-CA
1 G-ATTCATAGATAGAA
7892477 GATTCATAGA-AGAA
1 GATTCATAGATAGAA
**
7892491 GATTCATAGATATGGC
1 GATTCATAGATA-GAA
* * *
7892507 GAAATCATACAT-GCA
1 G-ATTCATAGATAGAA
7892522 GATTCATA-ATAGAA
1 GATTCATAGATAGAA
*
7892536 AATTCATAGATA
1 GATTCATAGATA
7892548 TGGCGAACTC
Statistics
Matches: 75, Mismatches: 16, Indels: 19
0.68 0.15 0.17
Matches are distributed among these distances:
13 9 0.12
14 38 0.51
15 7 0.09
16 7 0.09
17 14 0.19
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.27
Consensus pattern (15 bp):
GATTCATAGATAGAA
Found at i:7893343 original size:20 final size:19
Alignment explanation
Indices: 7893295--7893345 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
7893285 CAAGATAAAC
7893295 ATTAAATTAA-AATTTAAT
1 ATTAAATTAATAATTTAAT
* *
7893313 ATCAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-AATTTAAT
7893333 ATTAAATTAATAA
1 ATTAAATTAATAA
7893346 AATACTATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 7
0.69 0.11 0.19
Matches are distributed among these distances:
18 7 0.28
19 3 0.12
20 15 0.60
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (19 bp):
ATTAAATTAATAATTTAAT
Found at i:7894752 original size:37 final size:37
Alignment explanation
Indices: 7894697--7894795 Score: 128
Period size: 37 Copynumber: 2.7 Consensus size: 37
7894687 CCGAAACACA
*
7894697 CCAATTGCTCGTAAGAGCTAATCCACCCAATAACATG
1 CCAATTGCTCATAAGAGCTAATCCACCCAATAACATG
* *
7894734 CCAGA-TGCTCATAAGAGCTAATCCACCCGATATCATG
1 CCA-ATTGCTCATAAGAGCTAATCCACCCAATAACATG
** *
7894771 CCAATTGCTCCGAAGAGCTAGTCCA
1 CCAATTGCTCATAAGAGCTAATCCA
7894796 ACCGAAAACA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
36 1 0.02
37 52 0.96
38 1 0.02
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.21
Consensus pattern (37 bp):
CCAATTGCTCATAAGAGCTAATCCACCCAATAACATG
Found at i:7895037 original size:10 final size:10
Alignment explanation
Indices: 7895016--7895044 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
7895006 TCTATAAACA
7895016 ATTATATC-T
1 ATTATATCAT
7895025 ATTATATCAT
1 ATTATATCAT
7895035 ATTATATCAT
1 ATTATATCAT
7895045 CAAAAAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTATATCAT
Found at i:7900118 original size:18 final size:18
Alignment explanation
Indices: 7900087--7900121 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7900077 ACTTAGTCAG
* *
7900087 TTTCTTCTTTCCCTTAGC
1 TTTCTACTTCCCCTTAGC
7900105 TTTCTACTTCCCCTTAG
1 TTTCTACTTCCCCTTAG
7900122 AAGACGAGAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.34, G:0.06, T:0.51
Consensus pattern (18 bp):
TTTCTACTTCCCCTTAGC
Found at i:7907029 original size:42 final size:40
Alignment explanation
Indices: 7906946--7907079 Score: 151
Period size: 42 Copynumber: 3.2 Consensus size: 40
7906936 TTTAGGCCTA
* * *
7906946 TAGCGGCGCTTAGAAAAAACGCCACTAAAGATCATGGTCTT
1 TAGCGGCG-TTTGAAAAAACGCCGCTAAAGATCATGTTCTT
7906987 TAGCGGCGTTTGAAAAAAGTCGCCGCTAAAGATCATGTTCTT
1 TAGCGGCGTTTGAAAAAA--CGCCGCTAAAGATCATGTTCTT
* * *
7907029 TAGTGGTGTTTGAAGACAAACGTCGCTATAAGATCATGTTCTT
1 TAGCGGCGTTTGAA-A-AAACGCCGCTA-AAGATCATGTTCTT
*
7907072 TACCGGCG
1 TAGCGGCG
7907080 CTTTCTTCAC
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
40 9 0.11
41 8 0.10
42 39 0.49
43 20 0.25
44 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (40 bp):
TAGCGGCGTTTGAAAAAACGCCGCTAAAGATCATGTTCTT
Found at i:7907543 original size:21 final size:21
Alignment explanation
Indices: 7907519--7907590 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
7907509 TTCTTTTGAA
* *
7907519 CCTCTGCTTCTCTCGTTGTAG
1 CCTCTGCTTCTCTCGCTGCAG
*
7907540 CCTCTGCTTCTCTCGCTGCAA
1 CCTCTGCTTCTCTCGCTGCAG
* * *
7907561 CCTCTACTTCCCTCGCTGCCG
1 CCTCTGCTTCTCTCGCTGCAG
7907582 CCTCTGCTT
1 CCTCTGCTT
7907591 TAAGTTGTAG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.06, C:0.43, G:0.15, T:0.36
Consensus pattern (21 bp):
CCTCTGCTTCTCTCGCTGCAG
Found at i:7912876 original size:9 final size:9
Alignment explanation
Indices: 7912859--7913147 Score: 211
Period size: 9 Copynumber: 33.4 Consensus size: 9
7912849 AATTTATGTA
*
7912859 TTATATAAG
1 TTATGTAAG
7912868 TTATGTAAG
1 TTATGTAAG
*
7912877 TTACGT-A-
1 TTATGTAAG
7912884 TTATGTAAGCTAG
1 TTATGT-A---AG
7912897 TTATGTAAG
1 TTATGTAAG
*
7912906 TTATGATATG
1 TTATG-TAAG
* * **
7912916 ATATAT-TT
1 TTATGTAAG
7912924 TTATGT-A-
1 TTATGTAAG
7912931 TTATGTAAG
1 TTATGTAAG
7912940 TTATGTAAG
1 TTATGTAAG
7912949 TTATGT-A-
1 TTATGTAAG
7912956 TTATGT-A-
1 TTATGTAAG
7912963 TTATGTAAG
1 TTATGTAAG
7912972 -TACTGTAAG
1 TTA-TGTAAG
*
7912981 TAATGTAAG
1 TTATGTAAG
*
7912990 TAATGT-A-
1 TTATGTAAG
*
7912997 TTATGTACG
1 TTATGTAAG
*
7913006 TTGTGT-A-
1 TTATGTAAG
*
7913013 TAATGTAAG
1 TTATGTAAG
*
7913022 TTAAG-AAGG
1 TTATGTAA-G
7913031 TTATGT-A-
1 TTATGTAAG
7913038 TTATGTAAG
1 TTATGTAAG
*
7913047 TTATTTAAG
1 TTATGTAAG
7913056 TTATGTAAG
1 TTATGTAAG
*
7913065 TTATTTAAG
1 TTATGTAAG
7913074 TTATGTAAG
1 TTATGTAAG
7913083 TTATGTAAG
1 TTATGTAAG
* *
7913092 TTATTTAAT
1 TTATGTAAG
7913101 TTATGTAAG
1 TTATGTAAG
7913110 TTATGTAAG
1 TTATGTAAG
*
7913119 TTATGTAGG
1 TTATGTAAG
7913128 TTATGT-AG
1 TTATGTAAG
*
7913136 -TATGTTAG
1 TTATGTAAG
7913144 TTAT
1 TTAT
7913148 TATGTTATTA
Statistics
Matches: 227, Mismatches: 30, Indels: 46
0.75 0.10 0.15
Matches are distributed among these distances:
7 44 0.19
8 19 0.08
9 149 0.66
10 7 0.03
12 2 0.01
13 6 0.03
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:7912934 original size:7 final size:7
Alignment explanation
Indices: 7912924--7912969 Score: 56
Period size: 7 Copynumber: 6.0 Consensus size: 7
7912914 TGATATATTT
7912924 TTATGTA
1 TTATGTA
7912931 TTATGTAA
1 TTATGT-A
7912939 GTTATGTAA
1 -TTATGT-A
7912948 GTTATGTA
1 -TTATGTA
7912956 TTATGTA
1 TTATGTA
7912963 TTATGTA
1 TTATGTA
7912970 AGTACTGTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
7 20 0.54
8 2 0.05
9 15 0.41
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.52
Consensus pattern (7 bp):
TTATGTA
Found at i:7913020 original size:41 final size:39
Alignment explanation
Indices: 7912924--7913140 Score: 141
Period size: 41 Copynumber: 5.2 Consensus size: 39
7912914 TGATATATTT
* *
7912924 TTATGTATTATGTAAGTTATGTAAGTTATGTATTATGTA
1 TTATGTATAATGTAAGTAATGTAAGTTATGTATTATGTA
* *
7912963 TTATGTAAGTACTGTAAGTAATGTAAGTAATGTATTATGTA
1 TTATGT-A-TAATGTAAGTAATGTAAGTTATGTATTATGTA
*
7913004 CGTTGTGTATAATGTAAGTTAA-G-AAGGTTATGTATTATGTAA
1 --TTATGTATAATGTAAG-TAATGTAA-GTTATGTATTATGT-A
* * * *
7913046 GTTATTTAAGTTATGTAAGTTATTTAAGTTATGTAAGTTATGTAA
1 -TTATGT-A-TAATGTAAGTAATGTAAGTTATGT-A-TTATGT-A
* * *
7913091 GTTATTTAATTTATGTAAGTTATGTAAGTTATGTAGGTTATGTA
1 -TTATGT-A-TAATGTAAGTAATGTAAGTTATGTA--TTATGTA
*
7913135 GTATGT
1 TTATGT
7913141 TAGTTATTAT
Statistics
Matches: 148, Mismatches: 16, Indels: 24
0.79 0.09 0.13
Matches are distributed among these distances:
39 6 0.04
40 3 0.02
41 55 0.37
42 8 0.05
43 24 0.16
44 5 0.03
45 47 0.32
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (39 bp):
TTATGTATAATGTAAGTAATGTAAGTTATGTATTATGTA
Found at i:7913074 original size:27 final size:27
Alignment explanation
Indices: 7912931--7913174 Score: 158
Period size: 27 Copynumber: 9.4 Consensus size: 27
7912921 TTTTTATGTA
*
7912931 TTATGTAAGTTATGTAAGTTATGT-A-
1 TTATGTAAGTTATGTAAGTTATTTAAG
*
7912956 TTATGT-A-TTATGTAAG-TACTGTAAG
1 TTATGTAAGTTATGTAAGTTA-TTTAAG
* * * *
7912981 TAATGTAAGTAATGT-A-TTATGTACG
1 TTATGTAAGTTATGTAAGTTATTTAAG
* * **
7913006 TTGTGT-A-TAATGTAAGTTA-AGAAGG
1 TTATGTAAGTTATGTAAGTTATTTAA-G
7913031 TTATGT-A-TTATGTAAGTTATTTAAG
1 TTATGTAAGTTATGTAAGTTATTTAAG
* *
7913056 TTATGTAAGTTATTTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATTTAAG
* * *
7913083 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATTTAAG
* *
7913110 TTATGTAAGTTATGTAGGTTATGT-AG
1 TTATGTAAGTTATGTAAGTTATTTAAG
* *
7913136 -TATGTTAGTTAT-TATGTTATTATATAAG
1 TTATGTAAGTTATGTAAGTTA-T-T-TAAG
*
7913164 TTATGCAAGTT
1 TTATGTAAGTT
7913175 TCTATATATG
Statistics
Matches: 179, Mismatches: 23, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
22 2 0.01
23 18 0.10
24 11 0.06
25 60 0.34
26 9 0.05
27 69 0.39
28 2 0.01
29 8 0.04
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (27 bp):
TTATGTAAGTTATGTAAGTTATTTAAG
Found at i:7913283 original size:17 final size:18
Alignment explanation
Indices: 7913251--7913284 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7913241 TGATTGATAA
7913251 ATTTTGAAAAAAATATAG
1 ATTTTGAAAAAAATATAG
*
7913269 ATTTT-AAAAATATATA
1 ATTTTGAAAAAAATATA
7913285 AATTAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (18 bp):
ATTTTGAAAAAAATATAG
Found at i:7913290 original size:15 final size:16
Alignment explanation
Indices: 7913272--7913304 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7913262 AATATAGATT
7913272 TTAAAAA-TATATAAA
1 TTAAAAAGTATATAAA
7913287 TTAAAAATGTATATAAA
1 TTAAAAA-GTATATAAA
7913304 T
1 T
7913305 ATGTAAGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
TTAAAAAGTATATAAA
Found at i:7913363 original size:48 final size:43
Alignment explanation
Indices: 7913292--7913388 Score: 113
Period size: 43 Copynumber: 2.1 Consensus size: 43
7913282 ATAAATTAAA
*
7913292 AATGTATATAAATATGTAAGTTATTATAAGTAATGTATTTCGGTAAGT
1 AATGTATATAAATATGTAAG---TTAT--GTAATATATTTCGGTAAGT
* * *
7913340 AATGTATTTATATATTTAAGTTATGTAATATATTTCGGTAAGT
1 AATGTATATAAATATGTAAGTTATGTAATATATTTCGGTAAGT
7913383 AATGTA
1 AATGTA
7913389 AGTAATGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
43 24 0.53
45 4 0.09
48 17 0.38
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.44
Consensus pattern (43 bp):
AATGTATATAAATATGTAAGTTATGTAATATATTTCGGTAAGT
Found at i:7915346 original size:337 final size:336
Alignment explanation
Indices: 7914685--7915774 Score: 1121
Period size: 337 Copynumber: 3.2 Consensus size: 336
7914675 GTTTTTTTGC
* * * * *
7914685 AAAAACGCCACTAAAAATTAAAGTTC-AAACCGAAACGGCGCCGTTTAATTAAGCTTTAATGCAC
1 AAAAGCGCCACTAAAATTTAAAGTTCTAATCCAAAACGGCGCCGTTTTATTAAGCTTTAATGCAC
* *** * * ** *
7914749 AGTTCTGGCGTTTTCTGTAAAAATTACAGTAAAAATTAATTTGCTTAAGCTATATGGGGTCGTTT
66 AGTTCTGGCGTTTTTTGT-AAAACGCCAGTAAAAATTAATTTGCTTAAGCTAAACGAAGACGTTT
* * * * *
7914814 AGACAATATTTTAAGTCA-TTTTGTGGCGTTTTGTGCAAAAACGCCACTATAAATTAAGAGAAAC
130 AGACAATATTTTAAGTCACTTTTGCGGCGTTTCGT-AAAAAACGCCACTAAAAATTAACAGAAAC
* * *
7914878 GGCACCGTTGGATTAATTTAGAGAAAATGCTAAG-ATAAAAAAC-TAGTACAGAAACGGCATCGT
194 GGCGCCGTTGGATTAATATAGAGAAAATGCTAAGTATAAAAAACGT-GTACAGAAACGGCGTCGT
* ** * * *
7914941 TTAG-ACAAAATTTTAAGACAATTTTGCGGTGCATCCTGAACAAACGTCGCTACTGCTTGTACAT
258 TTAGCA-AAAATTTTAAGACAATTTTGCGGCGTTTCTTGAACAAACGCCGCTA-TGCTTGTGCAT
7915005 TTACGGCGTTTTCTA-
321 TTACGGCGTTTTCTAG
* * *
7915020 AAAAGCGCCACTAAAATTTAAAGTTCTAATCCAAAACGGTGCCGTTTTATTAAGCTGTAATGCAT
1 AAAAGCGCCACTAAAATTTAAAGTTCTAATCCAAAACGGCGCCGTTTTATTAAGCTTTAATGCAC
* * *
7915085 ATTTCTGGCGTTTTTTGATTAAACGCCAGTAAAAATTAATTTGCTTAAGCTAAACGAAGCCGTTT
66 AGTTCTGGCGTTTTTTG-TAAAACGCCAGTAAAAATTAATTTGCTTAAGCTAAACGAAGACGTTT
* * * *
7915150 AGGCAATATTTTATGTCACTTTTGCGGCGTTTGGTATAAAAACGCCACAAAAAATTAACAGAAAC
130 AGACAATATTTTAAGTCACTTTTGCGGCGTTTCGTA-AAAAACGCCACTAAAAATTAACAGAAAC
* * * *
7915215 TGCGCCATTGGATTAATATAGAGAAAATGCTAAGTAT-AAAAGCGTGTACAGAGACGGCGTCGTT
194 GGCGCCGTTGGATTAATATAGAGAAAATGCTAAGTATAAAAAACGTGTACAGAAACGGCGTCGTT
* * * *
7915279 TAGCAAAAATTTTAAGACAATTTAGCGGCGTTTATTGAACAAACGCCACTATAGCTTGTGTATTT
259 TAGCAAAAATTTTAAGACAATTTTGCGGCGTTTCTTGAACAAACGCCGCTAT-GCTTGTGCATTT
7915344 ACGGCG-TTTCTAG
323 ACGGCGTTTTCTAG
* * * * * *
7915357 AGAAGCGCCAC-AAAGA-ATAAAGGTTCTAATCCGAAACGGCGCCGTTTTGTTAAGATTTCATGC
1 AAAAGCGCCACTAAA-ATTTAAA-GTTCTAATCCAAAACGGCGCCGTTTTATTAAGCTTTAATGC
* * * * * * **
7915420 ATATTTCTGGCGTTTTCCTT-TAAAACGCCACTAGAAATTAATTTGCTTAAGTTAGACGTCGACG
64 ACAGTTCTGGCGTTTT--TTGTAAAACGCCAGTAAAAATTAATTTGCTTAAGCTAAACGAAGACG
* * * * **
7915484 TTTAGCCAATATTTCAAGTCACTTTTGCGGCGTTTCCTGAACAAACGCCACTAAAAATTAACTTA
127 TTTAGACAATATTTTAAGTCACTTTTGCGGCGTTTCGT-AAAAAACGCCACTAAAAATTAACAGA
** * *
7915549 AACGGCGCCGTTTAATTAATATAGAGAAAATGCTAAGT-TAAAAATCGTGGACAGAAACGGCGTC
191 AACGGCGCCGTTGGATTAATATAGAGAAAATGCTAAGTATAAAAAACGTGTACAGAAACGGCGTC
* * * * * * **
7915613 GTTCAACCAAAATTTTAAGTCACTTTTGCGGCGTTTCTTGTACAAACGCCGCTATTGCTTAAGCA
256 GTTTAGCAAAAATTTTAAGACAATTTTGCGGCGTTTCTTGAACAAACGCCGCTA-TGCTTGTGCA
** * *
7915678 -TTAGCGGAATTTT-AAT
320 TTTA-CGGCGTTTTCTAG
* * * * * * *
7915694 AAAATCGCCACT-AATTGTTAAAGTTCTAATCGAAAACTGTGCCATTTTATTAAGCTTCAATGCA
1 AAAAGCGCCACTAAAAT-TTAAAGTTCTAATCCAAAACGGCGCCGTTTTATTAAGCTTTAATGCA
*
7915758 CAGTTCTGGCCTTTTTT
65 CAGTTCTGGCGTTTTTT
7915775 TTTTAAAAAC
Statistics
Matches: 626, Mismatches: 108, Indels: 42
0.81 0.14 0.05
Matches are distributed among these distances:
335 26 0.04
336 118 0.19
337 467 0.75
338 13 0.02
339 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (336 bp):
AAAAGCGCCACTAAAATTTAAAGTTCTAATCCAAAACGGCGCCGTTTTATTAAGCTTTAATGCAC
AGTTCTGGCGTTTTTTGTAAAACGCCAGTAAAAATTAATTTGCTTAAGCTAAACGAAGACGTTTA
GACAATATTTTAAGTCACTTTTGCGGCGTTTCGTAAAAAACGCCACTAAAAATTAACAGAAACGG
CGCCGTTGGATTAATATAGAGAAAATGCTAAGTATAAAAAACGTGTACAGAAACGGCGTCGTTTA
GCAAAAATTTTAAGACAATTTTGCGGCGTTTCTTGAACAAACGCCGCTATGCTTGTGCATTTACG
GCGTTTTCTAG
Found at i:7916901 original size:73 final size:74
Alignment explanation
Indices: 7916775--7916939 Score: 251
Period size: 73 Copynumber: 2.2 Consensus size: 74
7916765 GCGGCACTTA
* *
7916775 CCCATAAACGCCACTAAATCCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTTTG
1 CCCAAAAACGCCACTAAATCCCCCGAAAGCTCAAAAAACGGCGTCGTTAGGCTTAGGTATTTTTG
*
7916840 CGACGCTTT
66 CGACGCATT
* *
7916849 CTCAAAAACGCCACTAAAT-CCCCGAAAGCTCAGAAAACGGCGTCGTTAGGCTTAGGTATTTTTG
1 CCCAAAAACGCCACTAAATCCCCCGAAAGCTCAAAAAACGGCGTCGTTAGGCTTAGGTATTTTTG
*
7916913 CGGCGCATT
66 CGACGCATT
* *
7916922 CCCAAAAATGCCGCTAAA
1 CCCAAAAACGCCACTAAA
7916940 GCCCTGAGCA
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
73 65 0.79
74 17 0.21
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (74 bp):
CCCAAAAACGCCACTAAATCCCCCGAAAGCTCAAAAAACGGCGTCGTTAGGCTTAGGTATTTTTG
CGACGCATT
Found at i:7917062 original size:187 final size:184
Alignment explanation
Indices: 7916717--7917240 Score: 674
Period size: 187 Copynumber: 2.8 Consensus size: 184
7916707 AAGATAAAAT
* * * * *
7916717 TATTTTTGCGGCGCTTTGTCAAAAACGCCGCTAAAAACCC-GAACATTAGCGGCACTTACCCATA
1 TATTTTTGCGGCGCTTTCTCAAAAACGCCGCT-AAAACCCTGAGCATTAGCGGCGCTTA-CTAAA
*
7916781 AACGCCACTAAATCCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTTTGCGACGC
64 AACGCCACTAAAT--CCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTTTGCGGCGC
* *
7916846 TTTCTCAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTAGGCTTAGG
127 TTACT-AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTAGGCTTAGG
* * * *
7916905 TATTTTTGCGGCGCATTCCCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTGACTAAAA
1 TATTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAACCCTGAGCATTAGCGGCGCTT-ACTAAAA
* * * **
7916970 ACGCCGCTAAATCCCTGAAATCTCAGAAAACAACGTCGTTGGGCTTAGGTATTTTTGCGGCGCTT
65 ACGCCACTAAATCCC-GAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTTTGCGGCGCTT
* * *
7917035 ACTTAAAAACGCTACTAAATCCCCGAAAGCTCAGAAAACGACGTTGTTGGGCTTAGG
129 AC-TAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTAGGCTTAGG
** * *
7917092 TATTTTTGCGGCGCTTTCTCACGAACGCCGCTAAATCCCTGGGCATTAGCGGCGCTTACTTAAAA
1 TATTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAACCCTGAGCATTAGCGGCGCTTAC-TAAAA
* * * *
7917157 ACGTCACTAAATCGCCAAAAGCTCAAAAAACGGCGTCGTTAGGCTTAGGTATTTTCGCGGCGCAT
65 ACGCCACTAAATC-CCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTTTGCGGCGC-T
7917222 TCAC-AAAAACGCCACTAAA
128 T-ACTAAAAACGCCACTAAA
7917241 GCCCTGAGCA
Statistics
Matches: 291, Mismatches: 37, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
186 5 0.02
187 220 0.76
188 63 0.22
189 3 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (184 bp):
TATTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAACCCTGAGCATTAGCGGCGCTTACTAAAAA
CGCCACTAAATCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTATTTTTGCGGCGCTTAC
TAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTAGGCTTAGG
Found at i:7917119 original size:73 final size:73
Alignment explanation
Indices: 7916953--7917130 Score: 241
Period size: 73 Copynumber: 2.4 Consensus size: 73
7916943 CTGAGCATTA
* * *
7916953 GCGGCGCTTGACT-AAAAACGCCGCTAAATCCCTGAAATCTCAGAAAACAACGTCGTTGGGCTTA
1 GCGGCGCTT-ACTCAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACAACGTCGTTGGGCTTA
7917017 GGTATTTTT
65 GGTATTTTT
* * * *
7917026 GCGGCGCTTACTTAAAAACGCTACTAAATCCCCGAAAGCTCAGAAAACGACGTTGTTGGGCTTAG
1 GCGGCGCTTACTCAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACAACGTCGTTGGGCTTAG
7917091 GTATTTTT
66 GTATTTTT
* ** *
7917099 GCGGCGCTTTCTCACGAACGCCGCTAAATCCC
1 GCGGCGCTTACTCAAAAACGCCACTAAATCCC
7917131 TGGGCATTAG
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
72 3 0.03
73 89 0.97
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (73 bp):
GCGGCGCTTACTCAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACAACGTCGTTGGGCTTAG
GTATTTTT
Found at i:7917144 original size:114 final size:114
Alignment explanation
Indices: 7917026--7917581 Score: 613
Period size: 114 Copynumber: 4.9 Consensus size: 114
7917016 AGGTATTTTT
* * *
7917026 GCGGCGCTTACTTAAAAACGCTACTAAATCCCCGAAAGCTCAGAAAACGACGTTGTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCTGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
** * *
7917091 GTATTTTTGCGGCGCTTTCTCACGAACGCCGCTAAATCCCTGGGCATTA
66 GTATTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * * * *
7917140 GCGGCGCTTACTTAAAAACG-TCACTAAATCGCCAAAAGCTCAAAAAACGGCGTCGTTAGGCTTA
1 GCGGCGCTTACTTAAAAACGCT-GCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTA
* * * *
7917204 GGTATTTTCGCGGCGCATTCACAAAAACGCCACTAAAGCCCTGAGCATTA
65 GGTATTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * * *
7917254 GCGGCACTTGAC-TAAAAACGCCGCTAAATCCCCGAAAAGCTCAGAAAACGGCATCGCTGGGCTT
1 GCGGCGCTT-ACTTAAAAACGCTGCTAAATCCCCG-AAAGCTCAGAAAACGGCGTCGTTGGGCTT
* * *
7917318 AGGTTTTTTTGCGGCGCTTTAC-CATAAACGCCGCTAAAGCCCTGAGCGTTA
64 AGGTATTTTTGCGGCGCTTT-CTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * * * * *
7917369 GCGGTGCTTACTTAAAAACGCCGCCAAATCCCCGAAAGGTCAG-AAACAGCGTCGTTGGGCTTAC
1 GCGGCGCTTACTTAAAAACGCTGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
* * * * * *
7917433 ATTTTTTTGTGGCGCTTTTTCAAAAACGCCGCTAAAGCCTTGAGCTTTA
66 GTATTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * * * *
7917482 GCGGCGCTTTCTTAAAAAATG-TCGCTAAATCCCTGAAAGCTC-GAAAAATGGCGTCGTTGGGAT
1 GCGGCGCTTACTT-AAAAACGCT-GCTAAATCCCCGAAAGCTCAG-AAAACGGCGTCGTTGGGCT
* **
7917545 TAGGTA-TTTTGCGGCGCTTTATGGAAAACGCCGCTAA
63 TAGGTATTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
7917582 TGCTTATTTT
Statistics
Matches: 371, Mismatches: 60, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
113 72 0.19
114 182 0.49
115 116 0.31
116 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (114 bp):
GCGGCGCTTACTTAAAAACGCTGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
GTATTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:7917335 original size:229 final size:227
Alignment explanation
Indices: 7917026--7917565 Score: 620
Period size: 229 Copynumber: 2.4 Consensus size: 227
7917016 AGGTATTTTT
* ** * *
7917026 GCGGCGCTTACTTAAAAACGCTACTAAATCCCCGAAAGCTCAGAAAACGACGTTGTTGGGCTTAG
1 GCGGCACTTACTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
* * * *
7917091 GTATTTTTGCGGCGCTTT-CTCACGAACGCCGCTAAATCCCTGGGCATTAGCGGCGCTTACTTAA
66 GTTTTTTTGCGGCGCTTTAC-CACAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAA
* * * * **
7917155 AAACGTCACTAAATCGCCAAAAGCTCAAAAAACGGCGTCGTTAGGCTTAGGTATTTTCGCGGCGC
130 AAACGCCACCAAATCCCCAAAAGCTC-AAAAACAGCGTCGTTAGGCTTACATATTTTCGCGGCGC
7917220 ATTCACAAAAACGCCACTAAAGCCCTGAGCATTA
194 ATTCACAAAAACGCCACTAAAGCCCTGAGCATTA
* *
7917254 GCGGCACTTGAC-TAAAAACGCCGCTAAATCCCCGAAAAGCTCAGAAAACGGCATCGCTGGGCTT
1 GCGGCACTT-ACTTAAAAACGCCGCTAAATCCCCG-AAAGCTCAGAAAACGGCGTCGTTGGGCTT
* * *
7917318 AGGTTTTTTTGCGGCGCTTTACCATAAACGCCGCTAAAGCCCTGAGCGTTAGCGGTGCTTACTTA
64 AGGTTTTTTTGCGGCGCTTTACCACAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTA
* * * * * * * *
7917383 AAAACGCCGCCAAATCCCCGAAAGGTCAGAAACAGCGTCGTTGGGCTTACATTTTTTTGTGGCGC
129 AAAACGCCACCAAATCCCCAAAAGCTCAAAAACAGCGTCGTTAGGCTTACATATTTTCGCGGCGC
* ** * * *
7917448 TTTTTCAAAAACGCCGCTAAAGCCTTGAGCTTTA
194 ATTCACAAAAACGCCACTAAAGCCCTGAGCATTA
* * * * * * *
7917482 GCGGCGCTTTCTTAAAAAATGTCGCTAAATCCCTGAAAGCTC-GAAAAATGGCGTCGTTGGGATT
1 GCGGCACTTACTT-AAAAACGCCGCTAAATCCCCGAAAGCTCAG-AAAACGGCGTCGTTGGGCTT
*
7917546 AGG-TATTTTGCGGCGCTTTA
64 AGGTTTTTTTGCGGCGCTTTA
7917566 TGGAAAACGC
Statistics
Matches: 262, Mismatches: 44, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
227 18 0.07
228 121 0.46
229 122 0.47
230 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (227 bp):
GCGGCACTTACTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
GTTTTTTTGCGGCGCTTTACCACAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAA
AACGCCACCAAATCCCCAAAAGCTCAAAAACAGCGTCGTTAGGCTTACATATTTTCGCGGCGCAT
TCACAAAAACGCCACTAAAGCCCTGAGCATTA
Found at i:7921165 original size:41 final size:41
Alignment explanation
Indices: 7921119--7921268 Score: 266
Period size: 41 Copynumber: 3.7 Consensus size: 41
7921109 AGGTTGTTTT
**
7921119 GCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAAGCCCTGAGCATTA
7921160 GCGGCGCTTTCTTAAAAACGCCGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAAGCCCTGAGCATTA
7921201 GCGGCGCTTTCTTAAAAACGCCGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAAGCCCTGAGCATTA
*
7921242 GCGGCGCTTTCTT-AAAATGCCGCTAAA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAA
7921269 TCCCCGAAAG
Statistics
Matches: 106, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
40 13 0.12
41 93 0.88
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (41 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:7925221 original size:3 final size:3
Alignment explanation
Indices: 7925215--7925256 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
7925205 GAAGAAAGAA
7925215 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7925257 GGGCGTAAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7929246 original size:18 final size:17
Alignment explanation
Indices: 7929219--7929252 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7929209 TAATTATATG
*
7929219 ATAATGTTAGCTAATAAA
1 ATAATATTAGC-AATAAA
7929237 ATAATATTAGCAATAA
1 ATAATATTAGCAATAA
7929253 CATCCCAGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.32
Consensus pattern (17 bp):
ATAATATTAGCAATAAA
Found at i:7938535 original size:220 final size:220
Alignment explanation
Indices: 7938153--7938816 Score: 1114
Period size: 220 Copynumber: 3.0 Consensus size: 220
7938143 TGTTCTAACA
* *
7938153 TTATTAGTGTTCGTGATAATTTGGCACTTACATGCTCTTGTGCTTTGTGATTACATTCCATATAT
1 TTATTAGTGTTCGTGATAATTTGGCATTTACATGCTCTTGTGCTCTGTGATTACATTCCATATAT
* * * * * * * *
7938218 CCTTCTTGTTCACTCGAGTCGATAAGGAGCAATGTGAGTGGTATATAAAAGTTAAGTGAATGATG
66 CCTTCTTATTCACTCGATTCTACAAGGGGCAACGTGAGTGGTGTATAAAAGATAAGTGAATGATG
* *
7938283 AAAGTATGGTAAGTGAAAACGTGTTAACTACCCTTGTTGTTACTATGTAATTTATCTTTGGTTCA
131 AAAGTATGGTAAGTGAAAATGTGTTAACTACCCTTGTTGTTACTATGTACTTTATCTTTGGTTCA
*
7938348 ATCATTTTAATCATGTTAATGATAG
196 ATCATTGTAATCATGTTAATGATAG
7938373 TTATTAGTGTTCGTGATAATTTGGCATTTACATGCTCTTGTGCTCTGTGATTACATTCCATATAT
1 TTATTAGTGTTCGTGATAATTTGGCATTTACATGCTCTTGTGCTCTGTGATTACATTCCATATAT
* *
7938438 CCTTCTTATTCACTCGATTCTACAAGGGGTAGCGTGAGTGGTGTATAAAAGATAAGTGAATGATG
66 CCTTCTTATTCACTCGATTCTACAAGGGGCAACGTGAGTGGTGTATAAAAGATAAGTGAATGATG
7938503 AAAGTATGGTAAGTGAAAATGTGTTAACTACCCTTGTTGTTACTATGTACTTTATCTTTGGTTCA
131 AAAGTATGGTAAGTGAAAATGTGTTAACTACCCTTGTTGTTACTATGTACTTTATCTTTGGTTCA
*
7938568 ATCATTGCAATCATGTTAATGATAG
196 ATCATTGTAATCATGTTAATGATAG
7938593 TTATTAGTGTTCGTGATAATTTGGCATTTACATGCTCTTGTGCTCTGTGATTACATTCCATATAT
1 TTATTAGTGTTCGTGATAATTTGGCATTTACATGCTCTTGTGCTCTGTGATTACATTCCATATAT
* * *
7938658 CCTTCTTATTCACTTGATTCTACAAAGGGCAACATGAGTGGTGTATAAAAGATAAGTGAATGATG
66 CCTTCTTATTCACTCGATTCTACAAGGGGCAACGTGAGTGGTGTATAAAAGATAAGTGAATGATG
* **
7938723 AAAGTATGGTAAGAGAAAATGTGTTAACTACAGTTGTTGTTACTATGTACTTTATC-TTGGTTCA
131 AAAGTATGGTAAGTGAAAATGTGTTAACTACCCTTGTTGTTACTATGTACTTTATCTTTGGTTCA
*
7938787 ATCATTGTAATCATGTTAATAATAG
196 ATCATTGTAATCATGTTAATGATAG
7938812 TTATT
1 TTATT
7938817 TATTTATTCA
Statistics
Matches: 418, Mismatches: 26, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
219 36 0.09
220 382 0.91
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.39
Consensus pattern (220 bp):
TTATTAGTGTTCGTGATAATTTGGCATTTACATGCTCTTGTGCTCTGTGATTACATTCCATATAT
CCTTCTTATTCACTCGATTCTACAAGGGGCAACGTGAGTGGTGTATAAAAGATAAGTGAATGATG
AAAGTATGGTAAGTGAAAATGTGTTAACTACCCTTGTTGTTACTATGTACTTTATCTTTGGTTCA
ATCATTGTAATCATGTTAATGATAG
Found at i:7943043 original size:26 final size:26
Alignment explanation
Indices: 7942991--7943043 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
7942981 AAAAAAGTTT
* * *
7942991 ATTTTTTATAAATTAATTGGTTGTTA
1 ATTTTTAATAAATTAATTGATTATTA
7943017 ATTTTTAATATAATTAATT-ATTATTA
1 ATTTTTAATA-AATTAATTGATTATTA
7943043 A
1 A
7943044 CTATTAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.57
Consensus pattern (26 bp):
ATTTTTAATAAATTAATTGATTATTA
Found at i:7949836 original size:37 final size:37
Alignment explanation
Indices: 7949786--7949860 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
7949776 GATGGAGAGT
*
7949786 ATGTATGGATTACTTCAAGCTTATTAAGGAAACTAGG
1 ATGTATGGATTACTACAAGCTTATTAAGGAAACTAGG
*
7949823 ATGTATGGATTACTACAAGCTTATTAAGGTAACTAGG
1 ATGTATGGATTACTACAAGCTTATTAAGGAAACTAGG
7949860 A
1 A
7949861 AGGACTATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (37 bp):
ATGTATGGATTACTACAAGCTTATTAAGGAAACTAGG
Found at i:7953748 original size:14 final size:14
Alignment explanation
Indices: 7953731--7953761 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
7953721 GTATGTATGA
7953731 TTATTTTAGTATAG
1 TTATTTTAGTATAG
7953745 TTATTTTAGTATAG
1 TTATTTTAGTATAG
7953759 TTA
1 TTA
7953762 AATCTGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (14 bp):
TTATTTTAGTATAG
Found at i:7956524 original size:31 final size:31
Alignment explanation
Indices: 7956486--7956547 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
7956476 AAGATGTCTG
7956486 ACCTTTTACAAGAATAAATAAACTATTTATA
1 ACCTTTTACAAGAATAAATAAACTATTTATA
* *
7956517 ACCTTTTAGAAGAATAAGTAAACTATTTATA
1 ACCTTTTACAAGAATAAATAAACTATTTATA
7956548 GTCTACACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.35
Consensus pattern (31 bp):
ACCTTTTACAAGAATAAATAAACTATTTATA
Found at i:7962949 original size:16 final size:16
Alignment explanation
Indices: 7962924--7962954 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7962914 TCATATGAAA
7962924 AAAATAAATAAATAAG
1 AAAATAAATAAATAAG
*
7962940 AAAATTAATAAATAA
1 AAAATAAATAAATAA
7962955 TTCATATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (16 bp):
AAAATAAATAAATAAG
Found at i:7964733 original size:11 final size:11
Alignment explanation
Indices: 7964717--7964779 Score: 56
Period size: 12 Copynumber: 5.5 Consensus size: 11
7964707 CATCGCGAGG
7964717 AAAAAGAAAAA
1 AAAAAGAAAAA
7964728 AAAAAG-AAAA
1 AAAAAGAAAAA
*
7964738 GAAAAGAAAAA
1 AAAAAGAAAAA
***
7964749 GGGAAGAAAAAA
1 AAAAAG-AAAAA
7964761 AGAAAAGAAAAA
1 A-AAAAGAAAAA
7964773 TAAAAAG
1 -AAAAAG
7964780 TTGCAAATAG
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
10 9 0.21
11 14 0.33
12 15 0.36
13 4 0.10
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:7964760 original size:13 final size:13
Alignment explanation
Indices: 7964717--7964772 Score: 55
Period size: 13 Copynumber: 4.2 Consensus size: 13
7964707 CATCGCGAGG
7964717 AAAAAG-AAA-AA
1 AAAAAGAAAAGAA
7964728 AAAAAGAAAAGAA
1 AAAAAGAAAAGAA
7964741 AAGAAA-AAGGGAAGAA
1 AA-AAAGAA---AAGAA
7964757 AAAAAGAAAAGAA
1 AAAAAGAAAAGAA
7964770 AAA
1 AAA
7964773 TAAAAAGTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
11 6 0.16
12 3 0.08
13 14 0.37
14 3 0.08
15 3 0.08
16 9 0.24
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAGAA
Found at i:7966262 original size:19 final size:17
Alignment explanation
Indices: 7966238--7966272 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
7966228 TAATTTACTC
7966238 TTTCTAATTCATATTTCTT
1 TTTCTAA-TCAT-TTTCTT
7966257 TTTCTAATCATTTTCT
1 TTTCTAATCATTTTCT
7966273 ATTAGGTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 4 0.25
19 7 0.44
ACGTcount: A:0.20, C:0.17, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTCTAATCATTTTCTT
Found at i:7966398 original size:15 final size:15
Alignment explanation
Indices: 7966375--7966405 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7966365 TCAGCGATAT
*
7966375 GTATTTTCATTTTGA
1 GTATCTTCATTTTGA
7966390 GTATCTTCATTTTGA
1 GTATCTTCATTTTGA
7966405 G
1 G
7966406 CAATATGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.10, G:0.16, T:0.55
Consensus pattern (15 bp):
GTATCTTCATTTTGA
Found at i:7969258 original size:18 final size:18
Alignment explanation
Indices: 7969203--7969259 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 18
7969193 CTTTACATCA
7969203 CGTTGTGGATAAACCACT
1 CGTTGTGGATAAACCACT
* *
7969221 CATTGTTGTGAATGAACCACT
1 C---GTTGTGGATAAACCACT
*
7969242 CGTTATGGATAAACCACT
1 CGTTGTGGATAAACCACT
7969260 AGTAATAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 15 0.48
21 16 0.52
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (18 bp):
CGTTGTGGATAAACCACT
Found at i:7981332 original size:22 final size:22
Alignment explanation
Indices: 7981300--7981344 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
7981290 AGGCTATATT
*
7981300 AGCCACTGAAATGTCTAAGCTA
1 AGCCACCGAAATGTCTAAGCTA
7981322 AGCCACCGAAATGTCTAAGCTA
1 AGCCACCGAAATGTCTAAGCTA
7981344 A
1 A
7981345 CTTACATTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (22 bp):
AGCCACCGAAATGTCTAAGCTA
Found at i:7985801 original size:104 final size:105
Alignment explanation
Indices: 7985610--7985819 Score: 413
Period size: 104 Copynumber: 2.0 Consensus size: 105
7985600 ACAAAACAGT
7985610 AATTTGCAGCTTAGCTACCAATATGTTAGGCTTAAGAGCCTTTCAGTACACTTCCTCCAAATATA
1 AATTTGCAGCTTAGCTACCAATATGTTAGGCTTAAGAGCCTTTCAGTACACTTCCTCCAAATATA
7985675 ATCAACCCAACCCCATACAATGCAACATACAAGTCATGAC
66 ATCAACCCAACCCCATACAATGCAACATACAAGTCATGAC
7985715 AATTTGCAGC-TAGCTACCAATATGTTAGGCTTAAGAGCCTTTCAGTACACTTCCTCCAAATATA
1 AATTTGCAGCTTAGCTACCAATATGTTAGGCTTAAGAGCCTTTCAGTACACTTCCTCCAAATATA
7985779 ATCAACCCAACCCCATACAATGCAACATACAAGTCATGAC
66 ATCAACCCAACCCCATACAATGCAACATACAAGTCATGAC
7985819 A
1 A
7985820 TGCTATCTCA
Statistics
Matches: 105, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
104 95 0.90
105 10 0.10
ACGTcount: A:0.36, C:0.28, G:0.11, T:0.25
Consensus pattern (105 bp):
AATTTGCAGCTTAGCTACCAATATGTTAGGCTTAAGAGCCTTTCAGTACACTTCCTCCAAATATA
ATCAACCCAACCCCATACAATGCAACATACAAGTCATGAC
Found at i:8000702 original size:17 final size:17
Alignment explanation
Indices: 8000680--8000713 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8000670 AGAGAATAGG
8000680 CAATTCACATAAAATAA
1 CAATTCACATAAAATAA
* *
8000697 CAATTCATATGAAATAA
1 CAATTCACATAAAATAA
8000714 TAGTTCATGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.26
Consensus pattern (17 bp):
CAATTCACATAAAATAA
Found at i:8000730 original size:34 final size:34
Alignment explanation
Indices: 8000692--8000760 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
8000682 ATTCACATAA
* *
8000692 AATAACAATTCATATGAA-ATAATAGTTCATGCAT
1 AATAACAATTCAT-TCAATATAATAATTCATGCAT
*
8000726 AATAACAATTCATTCAATATAATAATTCATTCAT
1 AATAACAATTCATTCAATATAATAATTCATGCAT
8000760 A
1 A
8000761 CCACATCGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
33 3 0.10
34 28 0.90
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (34 bp):
AATAACAATTCATTCAATATAATAATTCATGCAT
Found at i:8000737 original size:17 final size:18
Alignment explanation
Indices: 8000717--8000760 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
8000707 GAAATAATAG
*
8000717 TTCATGCATA-ATAACAA
1 TTCATTCATATATAACAA
*
8000734 TTCATTCA-ATATAATAA
1 TTCATTCATATATAACAA
8000751 TTCATTCATA
1 TTCATTCATA
8000761 CCACATCGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.04
17 21 0.91
18 1 0.04
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (18 bp):
TTCATTCATATATAACAA
Found at i:8000847 original size:22 final size:23
Alignment explanation
Indices: 8000822--8000865 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8000812 CTATGAAACG
* *
8000822 TATAAG-GGATTCTATTACCACT
1 TATAAGTGGACTCTATCACCACT
8000844 TATAAGTGGACTCTATCACCAC
1 TATAAGTGGACTCTATCACCAC
8000866 ACATTGGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (23 bp):
TATAAGTGGACTCTATCACCACT
Found at i:8010806 original size:127 final size:127
Alignment explanation
Indices: 8009961--8010778 Score: 1627
Period size: 127 Copynumber: 6.4 Consensus size: 127
8009951 AAGTTGTATG
8009961 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
1 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
8010026 TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
66 TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
8010088 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
1 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
8010153 TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
66 TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
8010215 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
1 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
8010280 TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
66 TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
8010342 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
1 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
8010407 TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
66 TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
8010469 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
1 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
8010534 TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
66 TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
8010596 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
1 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
8010661 TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
66 TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
8010723 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCATTTT
1 ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACC-TTTT
8010779 TTTTTTTTAC
Statistics
Matches: 690, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
127 686 0.99
128 4 0.01
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (127 bp):
ATATTTAAATAATTTAATATAATGATACATGAAATATAAATTTTAAATACCTTTTAAGTAATTAA
TATAAATAATTTGTAAATTGATGATATATAAAATATTAAAAAATTAAATATAATAATAAAGA
Found at i:8010948 original size:85 final size:86
Alignment explanation
Indices: 8010849--8011021 Score: 330
Period size: 85 Copynumber: 2.0 Consensus size: 86
8010839 AAAAAATAAA
8010849 TTCAGTAGTTTTTATTTTATTTTATTTCATTTAAGATTATATTATCTTTTATCGAACAATCTAAT
1 TTCAGTAG-TTTTATTTTATTTTATTTCATTTAAGATTATATTATCTTTTATCGAACAATCTAAT
8010914 AATATTTATTATTTAATTTTTT
65 AATATTTATTATTTAATTTTTT
8010936 TTCAGTAG-TTTATTTTATTTTATTTCATTTAAGATTATATTATCTTTTATCGAACAATCTAATA
1 TTCAGTAGTTTTATTTTATTTTATTTCATTTAAGATTATATTATCTTTTATCGAACAATCTAATA
8011000 ATATTTATTATTTAATTTTTT
66 ATATTTATTATTTAATTTTTT
8011021 T
1 T
8011022 AAAATATCAA
Statistics
Matches: 86, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
85 78 0.91
87 8 0.09
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (86 bp):
TTCAGTAGTTTTATTTTATTTTATTTCATTTAAGATTATATTATCTTTTATCGAACAATCTAATA
ATATTTATTATTTAATTTTTT
Found at i:8015209 original size:19 final size:19
Alignment explanation
Indices: 8015185--8015230 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
8015175 TCCCCTCTTA
8015185 ACCGGCCATGGCTCCGGTC
1 ACCGGCCATGGCTCCGGTC
8015204 ACCGGCCATGGCTCCGGTC
1 ACCGGCCATGGCTCCGGTC
*
8015223 ATCGGCCA
1 ACCGGCCA
8015231 ACGCACCGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.30, T:0.15
Consensus pattern (19 bp):
ACCGGCCATGGCTCCGGTC
Found at i:8016809 original size:132 final size:132
Alignment explanation
Indices: 8016666--8016975 Score: 532
Period size: 132 Copynumber: 2.3 Consensus size: 132
8016656 CCCTACTACC
*
8016666 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGG-TGACAGAATCTGCA
1 TTGGGAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGAT-ACAGAATCTGCA
* * * *
8016730 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAAGACTAATGGCTTAAATCTGCTTCTCCACT
65 AACTTCAACCTACTCCACTACTGCTTAGGGAGATAAGACAAATGGCTTAAATATGCTTCTCCACT
8016795 GTA
130 GTA
*
8016798 TTGGGAAGATAAGATTCACCATATTCGATCTGCTCTACTACTGCTTAGGGATACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGATACAGAATCTGCAA
*
8016863 ACTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACAAATGGCTTAAATATGCTTCTCCACTG
66 ACTTCAACCTACTCCACTACTGCTTAGGGAGATAAGACAAATGGCTTAAATATGCTTCTCCACTG
8016928 TA
131 TA
*
8016930 TTGGAAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTT
1 TTGGGAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTT
8016976 NNNNNNNNNN
Statistics
Matches: 168, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
132 167 0.99
133 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
TTGGGAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGATACAGAATCTGCAA
ACTTCAACCTACTCCACTACTGCTTAGGGAGATAAGACAAATGGCTTAAATATGCTTCTCCACTG
TA
Found at i:8018575 original size:13 final size:14
Alignment explanation
Indices: 8018558--8018596 Score: 55
Period size: 12 Copynumber: 2.9 Consensus size: 14
8018548 TTTTTCATTT
8018558 TTTCATTTTTTTCA
1 TTTCATTTTTTTCA
8018572 -TTCA-TTTTTTCA
1 TTTCATTTTTTTCA
8018584 TTTTCATTTTTTT
1 -TTTCATTTTTTT
8018597 TTTGTTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 8 0.36
13 4 0.18
14 4 0.18
15 6 0.27
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTCATTTTTTTCA
Found at i:8018575 original size:21 final size:19
Alignment explanation
Indices: 8018535--8018587 Score: 72
Period size: 21 Copynumber: 2.7 Consensus size: 19
8018525 TTAGCCTCTC
*
8018535 CATTTTTAC-TTTTTTTTT
1 CATTTTTTCATTTTTTTTT
8018553 CATTTTTTCATTTTTTTCATT
1 CATTTTTTCATTTTTTT--TT
8018574 CATTTTTTCATTTT
1 CATTTTTTCATTTT
8018588 CATTTTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
18 8 0.26
19 7 0.23
21 16 0.52
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (19 bp):
CATTTTTTCATTTTTTTTT
Found at i:8019414 original size:7 final size:7
Alignment explanation
Indices: 8019402--8019433 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
8019392 TGACCTCTCC
8019402 TTTTTCT
1 TTTTTCT
8019409 TTTTTCT
1 TTTTTCT
8019416 TTTTTCT
1 TTTTTCT
*
8019423 TCTTTCT
1 TTTTTCT
8019430 TTTT
1 TTTT
8019434 CTCCTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:8019458 original size:1 final size:1
Alignment explanation
Indices: 8019447--8019560 Score: 57
Period size: 1 Copynumber: 114.0 Consensus size: 1
8019437 CTATTTTGAC
* ** * * * * * * * *
8019447 TTTTATTTTTTTGATTTTTGTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * *
8019512 TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8019561 GTCTGAACTC
Statistics
Matches: 76, Mismatches: 37, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
1 76 1.00
ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83
Consensus pattern (1 bp):
T
Found at i:8019464 original size:6 final size:6
Alignment explanation
Indices: 8019454--8019562 Score: 202
Period size: 6 Copynumber: 18.2 Consensus size: 6
8019444 GACTTTTATT
8019454 TTTTTG ATTTTTG -TTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
1 TTTTTG -TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
8019502 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
8019550 TTTTTG TTTTTG T
1 TTTTTG TTTTTG T
8019563 CTGAACTCAT
Statistics
Matches: 101, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.05
6 90 0.89
7 6 0.06
ACGTcount: A:0.01, C:0.00, G:0.17, T:0.83
Consensus pattern (6 bp):
TTTTTG
Found at i:8027247 original size:3 final size:3
Alignment explanation
Indices: 8027239--8027264 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8027229 TGTATTGACT
8027239 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
8027265 GACAGGGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8048609 original size:31 final size:30
Alignment explanation
Indices: 8048574--8048753 Score: 116
Period size: 31 Copynumber: 5.7 Consensus size: 30
8048564 GTATGATATT
8048574 TAAATAATTTAATATAATGATACATGAAATA
1 TAAATAATTTAATATAATGATA-ATGAAATA
** * *
8048605 TAAAT--TTTAAATACCTTTTAAGTAAT-TAATA
1 TAAATAATTT-AATA--TAATGA-TAATGAAATA
* *
8048636 TAAATAATTTGTAA-ATTGATGATATATAAAATA
1 TAAATAA-TT-TAATA-TAATGATA-ATGAAATA
* * * * *
8048669 TTAAAAAATTAAATATAATAATAAAGAATATT
1 -TAAATAATTTAATATAATGATAATGAA-ATA
*
8048701 TAAATAATTTAATATAATGATAAATGATATA
1 TAAATAATTTAATATAATGAT-AATGAAATA
8048732 TAAATAATTTAATATAATGATA
1 TAAATAATTTAATATAATGATA
8048754 TGTTTAAATA
Statistics
Matches: 113, Mismatches: 22, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
29 3 0.03
30 5 0.04
31 60 0.53
32 24 0.21
33 10 0.09
34 10 0.09
35 1 0.01
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.39
Consensus pattern (30 bp):
TAAATAATTTAATATAATGATAATGAAATA
Found at i:8048748 original size:14 final size:14
Alignment explanation
Indices: 8048701--8048748 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
8048691 AAAGAATATT
8048701 TAAATAATTTAATA
1 TAAATAATTTAATA
* *
8048715 TAATGATAAATGATATA
1 TAA--ATAATTTA-ATA
8048732 TAAATAATTTAATA
1 TAAATAATTTAATA
8048746 TAA
1 TAA
8048749 TGATATGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
14 9 0.33
15 6 0.22
16 6 0.22
17 6 0.22
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (14 bp):
TAAATAATTTAATA
Found at i:8055513 original size:43 final size:43
Alignment explanation
Indices: 8055366--8055534 Score: 148
Period size: 43 Copynumber: 4.0 Consensus size: 43
8055356 CTCGTACAAC
* * * * *
8055366 GCCAACGTCCCAGACGTGGTCTTACATGTAATCATATATCAAT
1 GCCAACGTCCCAGACGTGGTCTTACACGTAAACACAAATCGAT
** * * *
8055409 GCCATTGTCCCAGA-GAGGGTCTTACTCG--AA-TCAAATACGAT
1 GCCAACGTCCCAGACG-TGGTCTTACACGTAAACACAAAT-CGAT
* * *
8055450 GCCAATGTCCTAGACATGGTCTTACACGTAAACACAAATCGAT
1 GCCAACGTCCCAGACGTGGTCTTACACGTAAACACAAATCGAT
* * *
8055493 GCCAACGTCCCATACGTGGTCTTACACGAAAACACATATCGA
1 GCCAACGTCCCAGACGTGGTCTTACACGTAAACACAAATCGA
8055535 AAATCCTATG
Statistics
Matches: 98, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
40 3 0.03
41 26 0.27
42 1 0.01
43 63 0.64
44 5 0.05
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
GCCAACGTCCCAGACGTGGTCTTACACGTAAACACAAATCGAT
Found at i:8058020 original size:15 final size:15
Alignment explanation
Indices: 8058000--8058037 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
8057990 TGTATTGACT
8058000 GAAGAAGAAAAAGAA
1 GAAGAAGAAAAAGAA
8058015 GAAGAAGAAAAAGAA
1 GAAGAAGAAAAAGAA
*
8058030 AAAGAAGA
1 GAAGAAGA
8058038 GACAGGGGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (15 bp):
GAAGAAGAAAAAGAA
Found at i:8065044 original size:21 final size:21
Alignment explanation
Indices: 8065018--8065070 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
8065008 CATTGTTTCT
*
8065018 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
* *
8065039 AATCTCAACGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
8065060 AATCTCACCGC
1 AATCTCACCGC
8065071 CACCGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.38, G:0.09, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:8066968 original size:14 final size:14
Alignment explanation
Indices: 8066949--8066976 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8066939 TGTTAACAAA
8066949 CTGATTTTAGGGTT
1 CTGATTTTAGGGTT
8066963 CTGATTTTAGGGTT
1 CTGATTTTAGGGTT
8066977 ATGAGGGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.29, T:0.50
Consensus pattern (14 bp):
CTGATTTTAGGGTT
Found at i:8067393 original size:13 final size:12
Alignment explanation
Indices: 8067375--8067413 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
8067365 ATTTAATCCT
8067375 TTTTTTAAATTTA
1 TTTTTT-AATTTA
8067388 TTTTTTAATTTA
1 TTTTTTAATTTA
**
8067400 TTAATTAATTTA
1 TTTTTTAATTTA
8067412 TT
1 TT
8067414 ATTATTATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 18 0.75
13 6 0.25
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTTTAATTTA
Found at i:8067669 original size:4 final size:4
Alignment explanation
Indices: 8067660--8067694 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
8067650 TATTTTCATT
8067660 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
8067695 ATCTATTGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:8072548 original size:62 final size:62
Alignment explanation
Indices: 8072480--8072604 Score: 241
Period size: 62 Copynumber: 2.0 Consensus size: 62
8072470 CTGTGCAAGA
8072480 ACTGCCTGCATCTTTATCTGCCACAACACAAATTTGGTGTTGCGATCCAACAGCGAAATTTC
1 ACTGCCTGCATCTTTATCTGCCACAACACAAATTTGGTGTTGCGATCCAACAGCGAAATTTC
*
8072542 ACTGCCTGTATCTTTATCTGCCACAACACAAATTTGGTGTTGCGATCCAACAGCGAAATTTC
1 ACTGCCTGCATCTTTATCTGCCACAACACAAATTTGGTGTTGCGATCCAACAGCGAAATTTC
8072604 A
1 A
8072605 TACTTCAAAG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (62 bp):
ACTGCCTGCATCTTTATCTGCCACAACACAAATTTGGTGTTGCGATCCAACAGCGAAATTTC
Found at i:8078405 original size:3 final size:3
Alignment explanation
Indices: 8078397--8078424 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
8078387 TGTATTGACT
8078397 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
8078425 GAGAGGAGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8083276 original size:15 final size:15
Alignment explanation
Indices: 8083237--8083276 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
8083227 GAACTGGGTC
*
8083237 AAATCAAAATTTCAT
1 AAATCAAAATTGCAT
*
8083252 ATAT-AAAATTGCAT
1 AAATCAAAATTGCAT
8083266 AAATCAAAATT
1 AAATCAAAATT
8083277 CATGTGTACA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.55, C:0.10, G:0.03, T:0.33
Consensus pattern (15 bp):
AAATCAAAATTGCAT
Found at i:8089039 original size:17 final size:18
Alignment explanation
Indices: 8089017--8089060 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
8089007 TGTAATTATC
8089017 ATAATT-TTTATAAAAT-T
1 ATAATTATTT-TAAAATAT
*
8089034 ATAATTATTTTTAAATAT
1 ATAATTATTTTAAAATAT
8089052 ATAATTATT
1 ATAATTATT
8089061 ACAATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATAATTATTTTAAAATAT
Found at i:8089057 original size:24 final size:24
Alignment explanation
Indices: 8088991--8089059 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 24
8088981 ATTTAATTTT
* *
8088991 TAATTATTTTTAAATGTGTAATTA
1 TAATTATTTTTAAATATATAATTA
* *
8089015 TCATAATTTTT--ATA-A-AATTA
1 TAATTATTTTTAAATATATAATTA
8089035 TAATTATTTTTAAATATATAATTA
1 TAATTATTTTTAAATATATAATTA
8089059 T
1 T
8089060 TACAATTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
20 14 0.40
22 5 0.14
23 1 0.03
24 15 0.43
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (24 bp):
TAATTATTTTTAAATATATAATTA
Found at i:8090221 original size:20 final size:19
Alignment explanation
Indices: 8090187--8090230 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
8090177 CAACAGAACC
* *
8090187 GAACAAAATAGAACAGAGAA
1 GAACAAAACAAAACA-AGAA
*
8090207 GAACAAAACAAAACAAGTA
1 GAACAAAACAAAACAAGAA
8090226 GAACA
1 GAACA
8090231 GAACTGAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.66, C:0.14, G:0.16, T:0.05
Consensus pattern (19 bp):
GAACAAAACAAAACAAGAA
Found at i:8090853 original size:79 final size:79
Alignment explanation
Indices: 8090757--8090911 Score: 222
Period size: 79 Copynumber: 2.0 Consensus size: 79
8090747 ATGCACGGTT
* *
8090757 ATAAACCAAAATCAGTAACAATCAATCTAACATGTTTAGATATC-ATATATTCTTCATCAAAAAA
1 ATAAACCAAAATCAGTAACAATCAATCTAACATATTCAGATATCGA-ATATTCTTCATCAAAAAA
*
8090821 GTAATGTAGAGGATC
65 GTAATGCAGAGGATC
* * * * *
8090836 ATAAATCAAAATTAGTAACAATCAATCTAACATATTCAGATATCGAATATTCTTCATTAATAGAG
1 ATAAACCAAAATCAGTAACAATCAATCTAACATATTCAGATATCGAATATTCTTCATCAAAAAAG
8090901 TAATGCAGAGG
66 TAATGCAGAGG
8090912 CGTACTAACA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
79 66 0.99
80 1 0.01
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (79 bp):
ATAAACCAAAATCAGTAACAATCAATCTAACATATTCAGATATCGAATATTCTTCATCAAAAAAG
TAATGCAGAGGATC
Found at i:8096306 original size:13 final size:13
Alignment explanation
Indices: 8096288--8096340 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
8096278 TTTCAAAAAT
8096288 ACTTCTAAAAAGC
1 ACTTCTAAAAAGC
* *
8096301 AGTTCTTAAAAGC
1 ACTTCTAAAAAGC
8096314 ACTTCTCAAAAA-C
1 ACTTCT-AAAAAGC
* *
8096327 ACTTTTCAAAAGC
1 ACTTCTAAAAAGC
8096340 A
1 A
8096341 ATGAAGAACT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
12 4 0.12
13 24 0.75
14 4 0.12
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.26
Consensus pattern (13 bp):
ACTTCTAAAAAGC
Found at i:8096337 original size:26 final size:26
Alignment explanation
Indices: 8096277--8096340 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
8096267 ACACTTAAAT
** *
8096277 TTTTCAAAAATACTTCTAAAAAGCAG
1 TTTTCAAAAGCACTTCTAAAAAGCAC
8096303 TTCTT-AAAAGCACTTCTCAAAAA-CAC
1 TT-TTCAAAAGCACTTCT-AAAAAGCAC
8096329 TTTTCAAAAGCA
1 TTTTCAAAAGCA
8096341 ATGAAGAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
25 2 0.06
26 23 0.72
27 7 0.22
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.30
Consensus pattern (26 bp):
TTTTCAAAAGCACTTCTAAAAAGCAC
Found at i:8104982 original size:17 final size:17
Alignment explanation
Indices: 8104962--8105017 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 17
8104952 AGACTGCGAG
*
8104962 CTCATCAAAAGTGCAAA
1 CTCATCAAAACTGCAAA
* *
8104979 CTCATCAAAACTGCGAG
1 CTCATCAAAACTGCAAA
* *
8104996 CTTACCAAAACTGCAAA
1 CTCATCAAAACTGCAAA
8105013 CTCAT
1 CTCAT
8105018 ATGTGCGAGT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.41, C:0.29, G:0.11, T:0.20
Consensus pattern (17 bp):
CTCATCAAAACTGCAAA
Found at i:8105316 original size:22 final size:21
Alignment explanation
Indices: 8105274--8105316 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
8105264 ATACTTTCTT
*
8105274 TCATCAAATATCCAACAAATA
1 TCATCAAATAGCCAACAAATA
*
8105295 TCATCAAATAAGCCAACCAATA
1 TCATCAAAT-AGCCAACAAATA
8105317 ATGTGTCTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.51, C:0.26, G:0.02, T:0.21
Consensus pattern (21 bp):
TCATCAAATAGCCAACAAATA
Found at i:8106204 original size:2 final size:2
Alignment explanation
Indices: 8106197--8106221 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8106187 AGCATTCATA
8106197 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8106222 CATAGCATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8110376 original size:17 final size:18
Alignment explanation
Indices: 8110346--8110381 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
8110336 GTATAAATAC
8110346 GTATATATAAAATATAAG
1 GTATATATAAAATATAAG
8110364 GTATATA-AAAATATAAG
1 GTATATATAAAATATAAG
8110381 G
1 G
8110382 GATAAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.31
Consensus pattern (18 bp):
GTATATATAAAATATAAG
Found at i:8112504 original size:50 final size:50
Alignment explanation
Indices: 8112450--8112823 Score: 294
Period size: 50 Copynumber: 7.5 Consensus size: 50
8112440 CAAGGAAGTA
* *
8112450 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTATAATATCAGGGAAACT
1 AGATCCGCCGTTGTAGCTTCAATCTTTTTAATTGTAATATCAGGGAAACT
* ** * * * * *
8112500 AGATCCGCCGTTGTAGCTTCAATCTATTCCACTGTACT-GCTAAGG-AAGT
1 AGATCCGCCGTTGTAGCTTCAATCTTTTTAATTGTAATATC-AGGGAAACT
* * *
8112549 AAGATCCGCCGTTGTGGCTTCAATC-TTTTAATTGCAATATCAGAGAAACT
1 -AGATCCGCCGTTGTAGCTTCAATCTTTTTAATTGTAATATCAGGGAAACT
* * * ** * * * * *
8112599 AGATCCGTCGTCGTAGCTTCAATCTATTCCACTGTACT-GCTAAGG-AATT
1 AGATCCGCCGTTGTAGCTTCAATCTTTTTAATTGTAATATC-AGGGAAACT
* *
8112648 AAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACT
1 -AGATCCGCCGTTGTAGCTTCAATCTTTTTAATTGTAATATCAGGGAAACT
* * ** * * * * *
8112699 AGATCCGCCGTCGTAGCTTCAATCTATTCCACTGTACT-GCTAAGG-AATT
1 AGATCCGCCGTTGTAGCTTCAATCTTTTTAATTGTAATATC-AGGGAAACT
* * *
8112748 AAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCAGGGAAACC
1 -AGATCCGCCGTTGTAGCTTCAATCTTTTTAATTGTAATATCAGGGAAACT
* *
8112799 AGATCCGCTGTCGTAGCTTCAATCT
1 AGATCCGCCGTTGTAGCTTCAATCT
8112824 ATTTCGCTGT
Statistics
Matches: 239, Mismatches: 72, Indels: 26
0.71 0.21 0.08
Matches are distributed among these distances:
49 42 0.18
50 190 0.79
51 7 0.03
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (50 bp):
AGATCCGCCGTTGTAGCTTCAATCTTTTTAATTGTAATATCAGGGAAACT
Found at i:8112504 original size:100 final size:100
Alignment explanation
Indices: 8112367--8112878 Score: 771
Period size: 100 Copynumber: 5.1 Consensus size: 100
8112357 ATCTGAAATT
* * * * * *
8112367 TTCAAT-TTATTTAACTGCAATGTC-GAGGAAACCAGATCTGCCGCCGTAGCTTCAATCTGTTCC
1 TTCAATCTT-TTTAATTGCAATATCAG-GGAAACTAGATCCGCCGTCGTAGCTTCAATCTATTCC
* * *
8112430 ACCGCACCG-TCAAGGAAGTAAGATCCGCCGTTGTGGC
64 ACTGTACTGCT-AAGGAAGTAAGATCCGCCGTTGTGGC
** *
8112467 TTCAATCTTTTTAATTATAATATCAGGGAAACTAGATCCGCCGTTGTAGCTTCAATCTATTCCAC
1 TTCAATCTTTTTAATTGCAATATCAGGGAAACTAGATCCGCCGTCGTAGCTTCAATCTATTCCAC
8112532 TGTACTGCTAAGGAAGTAAGATCCGCCGTTGTGGC
66 TGTACTGCTAAGGAAGTAAGATCCGCCGTTGTGGC
* *
8112567 TTCAATC-TTTTAATTGCAATATCAGAGAAACTAGATCCGTCGTCGTAGCTTCAATCTATTCCAC
1 TTCAATCTTTTTAATTGCAATATCAGGGAAACTAGATCCGCCGTCGTAGCTTCAATCTATTCCAC
*
8112631 TGTACTGCTAAGGAATTAAGATCCGCCGTTGTGGC
66 TGTACTGCTAAGGAAGTAAGATCCGCCGTTGTGGC
8112666 TTCAATCTTTTTAATTGCAATATCAGGGAAACTAGATCCGCCGTCGTAGCTTCAATCTATTCCAC
1 TTCAATCTTTTTAATTGCAATATCAGGGAAACTAGATCCGCCGTCGTAGCTTCAATCTATTCCAC
*
8112731 TGTACTGCTAAGGAATTAAGATCCGCCGTTGTGGC
66 TGTACTGCTAAGGAAGTAAGATCCGCCGTTGTGGC
* * * *
8112766 TTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCTGTCGTAGCTTCAATCTATTTCGC
1 TTCAATCTTTTTAATTGCAATATCAGGGAAACTAGATCCGCCGTCGTAGCTTCAATCTATTCCAC
* *
8112831 TGTACTGCTGAGGAAGTAAAATCCGCCGTTGTGGC
66 TGTACTGCTAAGGAAGTAAGATCCGCCGTTGTGGC
8112866 TTCAATCTTTTTA
1 TTCAATCTTTTTA
8112879 CTTTTCAACC
Statistics
Matches: 381, Mismatches: 27, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
99 93 0.24
100 284 0.75
101 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (100 bp):
TTCAATCTTTTTAATTGCAATATCAGGGAAACTAGATCCGCCGTCGTAGCTTCAATCTATTCCAC
TGTACTGCTAAGGAAGTAAGATCCGCCGTTGTGGC
Found at i:8117682 original size:56 final size:57
Alignment explanation
Indices: 8117606--8117721 Score: 225
Period size: 56 Copynumber: 2.1 Consensus size: 57
8117596 TCCCGATACA
8117606 AAAGTCTTGGATAAGTGAGGAAAGGTCATGGATTCTCATTCAACTTCACCCCCTGTC
1 AAAGTCTTGGATAAGTGAGGAAAGGTCATGGATTCTCATTCAACTTCACCCCCTGTC
8117663 AAAGTCTTGG-TAAGTGAGGAAAGGTCATGGATTCTCATTCAACTTCACCCCCTGTC
1 AAAGTCTTGGATAAGTGAGGAAAGGTCATGGATTCTCATTCAACTTCACCCCCTGTC
8117719 AAA
1 AAA
8117722 CGAGCCCTTC
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 49 0.83
57 10 0.17
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (57 bp):
AAAGTCTTGGATAAGTGAGGAAAGGTCATGGATTCTCATTCAACTTCACCCCCTGTC
Found at i:8124276 original size:2 final size:2
Alignment explanation
Indices: 8124269--8124294 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8124259 GTATGTATGC
8124269 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8124295 GTGTGTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8124418 original size:17 final size:18
Alignment explanation
Indices: 8124388--8124423 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
8124378 GTATAAATAC
8124388 GTATATATAAAATATAAG
1 GTATATATAAAATATAAG
8124406 GTATATA-AAAATATAAG
1 GTATATATAAAATATAAG
8124423 G
1 G
8124424 GATAAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.31
Consensus pattern (18 bp):
GTATATATAAAATATAAG
Found at i:8125166 original size:16 final size:16
Alignment explanation
Indices: 8125145--8125176 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8125135 CTAGCGTCCT
8125145 CGCGCCGCCGCCGCAA
1 CGCGCCGCCGCCGCAA
*
8125161 CGCGCCTCCGCCGCAA
1 CGCGCCGCCGCCGCAA
8125177 TTTCACCGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.56, G:0.28, T:0.03
Consensus pattern (16 bp):
CGCGCCGCCGCCGCAA
Found at i:8127014 original size:8 final size:8
Alignment explanation
Indices: 8127003--8127048 Score: 92
Period size: 8 Copynumber: 5.8 Consensus size: 8
8126993 ATCAATTCGT
8127003 TGAATTTA
1 TGAATTTA
8127011 TGAATTTA
1 TGAATTTA
8127019 TGAATTTA
1 TGAATTTA
8127027 TGAATTTA
1 TGAATTTA
8127035 TGAATTTA
1 TGAATTTA
8127043 TGAATT
1 TGAATT
8127049 ACCCTTACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (8 bp):
TGAATTTA
Found at i:8135349 original size:24 final size:24
Alignment explanation
Indices: 8135322--8135372 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
8135312 TACTTGGGTA
* *
8135322 ATTTGCCGTCAATTTATCCTTTAC
1 ATTTGCCGTCAATTCATCATTTAC
* *
8135346 ATTTTCCTTCAATTCATCATTTAC
1 ATTTGCCGTCAATTCATCATTTAC
8135370 ATT
1 ATT
8135373 CGTAGTTCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.49
Consensus pattern (24 bp):
ATTTGCCGTCAATTCATCATTTAC
Found at i:8135566 original size:107 final size:107
Alignment explanation
Indices: 8135380--8135595 Score: 387
Period size: 107 Copynumber: 2.0 Consensus size: 107
8135370 ATTCGTAGTT
* * *
8135380 CCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGTTATGGTCTTACATATAAACA
1 CCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATATAAAAA
8135445 CTGCCATGGTCCAACCATGGTCTTACGTTCATAGTGCCATAA
66 CTGCCATGGTCCAACCATGGTCTTACGTTCATAGTGCCATAA
*
8135487 CCATAACTCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATATAAAAA
1 CCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATATAAAAA
*
8135552 CTGCCATGGTCCAACCATGGTCTTACGTTCATAGTGTCATAA
66 CTGCCATGGTCCAACCATGGTCTTACGTTCATAGTGCCATAA
8135594 CC
1 CC
8135596 CAGTTATGGT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
107 104 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (107 bp):
CCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATATAAAAA
CTGCCATGGTCCAACCATGGTCTTACGTTCATAGTGCCATAA
Found at i:8136300 original size:24 final size:24
Alignment explanation
Indices: 8136272--8136318 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
8136262 AAGTGATATG
8136272 TGATTACATGTAAGACCATAGTTA
1 TGATTACATGTAAGACCATAGTTA
8136296 TGATTACATGTAAGACCATAGTT
1 TGATTACATGTAAGACCATAGTT
8136319 CGACTATGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (24 bp):
TGATTACATGTAAGACCATAGTTA
Found at i:8138412 original size:25 final size:26
Alignment explanation
Indices: 8138383--8138453 Score: 103
Period size: 25 Copynumber: 2.8 Consensus size: 26
8138373 GTGCATTATT
8138383 ACGTGCTAAATA-TCAGAGAGCACCA
1 ACGTGCTAAATACTCAGAGAGCACCA
* *
8138408 ACGTGCT-AATAGTCAGAGAGCACTA
1 ACGTGCTAAATACTCAGAGAGCACCA
8138433 ACGTGCTAAA-ACTCAGAGAGC
1 ACGTGCTAAATACTCAGAGAGC
8138454 GCGCTAAAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.10
25 36 0.86
26 2 0.05
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
ACGTGCTAAATACTCAGAGAGCACCA
Found at i:8139550 original size:5 final size:5
Alignment explanation
Indices: 8139542--8139583 Score: 66
Period size: 5 Copynumber: 8.2 Consensus size: 5
8139532 TTTATATATA
*
8139542 ATAAT ATAAT ATAAT ATAAT ATAAT ATTAT AATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT A
8139584 NNNNNNNNNN
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 30 0.88
6 4 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:8139550 original size:8 final size:8
Alignment explanation
Indices: 8139537--8139583 Score: 62
Period size: 8 Copynumber: 6.0 Consensus size: 8
8139527 TTTGTTTTAT
8139537 ATATAATA
1 ATATAATA
8139545 ATATAAT-
1 ATATAATA
8139552 ATA-ATATA
1 ATATA-ATA
8139560 ATATAATA
1 ATATAATA
*
8139568 TTATAATA
1 ATATAATA
8139576 ATATAATA
1 ATATAATA
8139584 NNNNNNNNNN
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
6 1 0.03
7 5 0.15
8 27 0.79
9 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
ATATAATA
Found at i:8149494 original size:11 final size:11
Alignment explanation
Indices: 8149478--8149503 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8149468 TCTTTCTTTC
8149478 TTTCTCCCCTG
1 TTTCTCCCCTG
8149489 TTTCTCCCCTG
1 TTTCTCCCCTG
8149500 TTTC
1 TTTC
8149504 GTTTCAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.50
Consensus pattern (11 bp):
TTTCTCCCCTG
Found at i:8160168 original size:22 final size:23
Alignment explanation
Indices: 8160143--8160193 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
8160133 ATTTCATCTT
*
8160143 TTTTTTGTCCATGTAATT-TAAA
1 TTTTTTGTCCATATAATTCTAAA
* * *
8160165 TTTTTGGTCCCTATAATTCTAAT
1 TTTTTTGTCCATATAATTCTAAA
8160188 TTTTTT
1 TTTTTT
8160194 TGTCATTTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.22, C:0.12, G:0.08, T:0.59
Consensus pattern (23 bp):
TTTTTTGTCCATATAATTCTAAA
Found at i:8163673 original size:30 final size:31
Alignment explanation
Indices: 8163637--8163696 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
8163627 AAACATTTTA
8163637 TTTTTCCCCAAAAT-TTTTACTCCC-TCCCAC
1 TTTTT-CCCAAAATCTTTTACTCCCTTCCCAC
* *
8163667 TTTTTCCCTAAATCTTTTATTCCCTTCCCA
1 TTTTTCCCAAAATCTTTTACTCCCTTCCCA
8163697 TCTACCCCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 7 0.27
30 14 0.54
31 5 0.19
ACGTcount: A:0.18, C:0.37, G:0.00, T:0.45
Consensus pattern (31 bp):
TTTTTCCCAAAATCTTTTACTCCCTTCCCAC
Found at i:8167697 original size:28 final size:28
Alignment explanation
Indices: 8167657--8167714 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
8167647 CAAAAATAAG
8167657 AGAAAATAATGAACAAATTACCTGGAAT
1 AGAAAATAATGAACAAATTACCTGGAAT
8167685 AGAAAATAATGAACAAATTACCTGGAAT
1 AGAAAATAATGAACAAATTACCTGGAAT
8167713 AG
1 AG
8167715 GTGATGCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.53, C:0.10, G:0.16, T:0.21
Consensus pattern (28 bp):
AGAAAATAATGAACAAATTACCTGGAAT
Found at i:8169191 original size:41 final size:41
Alignment explanation
Indices: 8169133--8169368 Score: 238
Period size: 41 Copynumber: 5.7 Consensus size: 41
8169123 GAAATAAATA
*
8169133 CCGCTAAAGGTCTTGTTCTTTAGCGGCGCTTAAAAAAAACG
1 CCGCTAAAGGTCATGTTCTTTAGCGGCGCTTAAAAAAAACG
* *
8169174 CCGCTAAAGATCATGTTCTTTAGCGGCGCATAAAAAAAACG
1 CCGCTAAAGGTCATGTTCTTTAGCGGCGCTTAAAAAAAACG
* ****
8169215 CCGCTAAAGGTCATGTTCTTTAGCGGCACTTTCTCGAAAACG
1 CCGCTAAAGGTCATGTTCTTTAGCGGCGC-TTAAAAAAAACG
* ** *
8169257 CCGCTAAAGGTCATGTTCTTTAGCGGTGCTTTTGTAACAAACG
1 CCGCTAAAGGTCATGTTCTTTAGCGGCGC--TTAAAAAAAACG
** ** * * * * *
8169300 CCGCTAAAGAACATGACCTATAGCGGCACCTACCAACAAACG
1 CCGCTAAAGGTCATGTTCTTTAGCGGCGCTTA-AAAAAAACG
*
8169342 CCGCTAAAGCTCATGTTCTTTAGCGGC
1 CCGCTAAAGGTCATGTTCTTTAGCGGC
8169369 ACTTTTATAA
Statistics
Matches: 161, Mismatches: 31, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
41 66 0.41
42 64 0.40
43 31 0.19
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (41 bp):
CCGCTAAAGGTCATGTTCTTTAGCGGCGCTTAAAAAAAACG
Found at i:8169267 original size:42 final size:42
Alignment explanation
Indices: 8169133--8169382 Score: 236
Period size: 42 Copynumber: 6.0 Consensus size: 42
8169123 GAAATAAATA
* *
8169133 CCGCTAAAGGTCTTGTTCTTTAGCGGCGC-TTAAAAAAAACG
1 CCGCTAAAGGTCATGTTCTTTAGCGGCACTTTAAAAAAAACG
* * *
8169174 CCGCTAAAGATCATGTTCTTTAGCGGCGC-ATAAAAAAAACG
1 CCGCTAAAGGTCATGTTCTTTAGCGGCACTTTAAAAAAAACG
****
8169215 CCGCTAAAGGTCATGTTCTTTAGCGGCACTTTCTCGAAAACG
1 CCGCTAAAGGTCATGTTCTTTAGCGGCACTTTAAAAAAAACG
** ** *
8169257 CCGCTAAAGGTCATGTTCTTTAGCGGTGCTTTTGTAACAAACG
1 CCGCTAAAGGTCATGTTCTTTAGCGGCAC-TTTAAAAAAAACG
** ** * * * *
8169300 CCGCTAAAGAACATGACCTATAGCGGCAC-CTACCAACAAACG
1 CCGCTAAAGGTCATGTTCTTTAGCGGCACTTTA-AAAAAAACG
* * *
8169342 CCGCTAAAGCTCATGTTCTTTAGCGGCACTTTTATAAAAAC
1 CCGCTAAAGGTCATGTTCTTTAGCGGCACTTTAAAAAAAAC
8169383 ACCACTAATT
Statistics
Matches: 169, Mismatches: 36, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
41 66 0.39
42 71 0.42
43 32 0.19
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (42 bp):
CCGCTAAAGGTCATGTTCTTTAGCGGCACTTTAAAAAAAACG
Done.