Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35726063
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1821929 characters in sequence are not A, C, G, or T
File 45 of 109
Found at i:14756713 original size:165 final size:166
Alignment explanation
Indices: 14756441--14756773 Score: 659
Period size: 165 Copynumber: 2.0 Consensus size: 166
14756431 ATTATAATGG
14756441 TTGAAAAGTGTTTTTTTTAATTGATACTATTTATCATTGCTGTCAAAAAGTACTTTTAAAAATAT
1 TTGAAAAGTGTTTTTTTTAATTGATACTATTTATCATTGCTGTCAAAAAGTACTTTTAAAAATAT
14756506 AAAAGATCTCTTTTAGATATGATGTTTTAAAGTAGAAAATATATATTCAAATGATATTTAAATTC
66 AAAAGATCTCTTTTAGATATGATGTTTTAAAGTAGAAAATATATATTCAAATGATATTTAAATTC
14756571 ATTAATATTATAATATATAAACTATA-AAACTTAAA
131 ATTAATATTATAATATATAAACTATATAAACTTAAA
14756606 TTGAAAAGTGTTTTTTTTAATTGATACTATTTATCATTGCTGTCAAAAAGTACTTTTAAAAATAT
1 TTGAAAAGTGTTTTTTTTAATTGATACTATTTATCATTGCTGTCAAAAAGTACTTTTAAAAATAT
14756671 AAAAGATCTCTTTTAGATATGATGTTTTAAAGTAGAAAATATATATTCAAATGATATTTAAATTC
66 AAAAGATCTCTTTTAGATATGATGTTTTAAAGTAGAAAATATATATTCAAATGATATTTAAATTC
14756736 ATTAATATTATAATATATAAACTATATAAACTTAAA
131 ATTAATATTATAATATATAAACTATATAAACTTAAA
14756772 TT
1 TT
14756774 ATAATAAAAA
Statistics
Matches: 167, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
165 156 0.93
166 11 0.07
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.42
Consensus pattern (166 bp):
TTGAAAAGTGTTTTTTTTAATTGATACTATTTATCATTGCTGTCAAAAAGTACTTTTAAAAATAT
AAAAGATCTCTTTTAGATATGATGTTTTAAAGTAGAAAATATATATTCAAATGATATTTAAATTC
ATTAATATTATAATATATAAACTATATAAACTTAAA
Found at i:14758336 original size:19 final size:18
Alignment explanation
Indices: 14758312--14758371 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 18
14758302 TTTAACAAAA
14758312 TTTTTAAAACTTTATAAAT
1 TTTTTAAAACTTT-TAAAT
* *
14758331 TTTTTATAACTTTTATGAT
1 TTTTTAAAACTTTTA-AAT
*
14758350 TTTTTAATAATTTTTAAAT
1 TTTTTAA-AACTTTTAAAT
14758369 TTT
1 TTT
14758372 AGAAGAGTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
18 2 0.06
19 25 0.74
20 7 0.21
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (18 bp):
TTTTTAAAACTTTTAAAT
Found at i:14760554 original size:152 final size:152
Alignment explanation
Indices: 14760278--14760557 Score: 355
Period size: 152 Copynumber: 1.8 Consensus size: 152
14760268 GATGTGGCAT
* * * *
14760278 TGATACATGCACAGATGGGGTGAAATTTACTTCATTCCATTCACTGAAGGTGCCAATTTCTAAAT
1 TGATACATGCACAAAGGGGGTAAAATTTACTTCATTCCATTCACCGAAGGTGCCAATTTCTAAAT
* * * * ** * **
14760343 TTGGAAAATCAATCGACTTGCGATAACTTTTTGGATGGGATCTTGATATTTCTGGGTCAATATTT
66 TTGAAAAATCAATCGAATTGCGACAACTTTTTCGATGGGATCCAGACATTTCTAAGTCAATATTT
14760408 CCTCTTATCGATTGAATATATG
131 CCTCTTATCGATTGAATATATG
* * * * * *
14760430 TGATACATGCACAAAGGGGGTAAAATTTA-TTATATTCTATTCACCGGAGGTGTCAATTTTTAAG
1 TGATACATGCACAAAGGGGGTAAAATTTACTT-CATTCCATTCACCGAAGGTGCCAATTTCTAAA
* *
14760494 TTTGAAAAATCAATTGAATTGTGACAACTTTTTCGATGGGATCCAGACATTTCTAAGTCAATAT
65 TTTGAAAAATCAATCGAATTGCGACAACTTTTTCGATGGGATCCAGACATTTCTAAGTCAATAT
14760558 GTCTTCATAT
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
151 2 0.02
152 104 0.98
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.36
Consensus pattern (152 bp):
TGATACATGCACAAAGGGGGTAAAATTTACTTCATTCCATTCACCGAAGGTGCCAATTTCTAAAT
TTGAAAAATCAATCGAATTGCGACAACTTTTTCGATGGGATCCAGACATTTCTAAGTCAATATTT
CCTCTTATCGATTGAATATATG
Found at i:14769592 original size:14 final size:14
Alignment explanation
Indices: 14769570--14769618 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 14
14769560 CACAGATAGT
14769570 AATCAGAATATTAA
1 AATCAGAATATTAA
*
14769584 AATCTGAATATTATA
1 AATCAGAATATTA-A
14769599 TGAATCAGCAATATTAA
1 --AATCAG-AATATTAA
14769616 AAT
1 AAT
14769619 ATGTAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
14 12 0.41
15 4 0.14
17 6 0.21
18 7 0.24
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (14 bp):
AATCAGAATATTAA
Found at i:14769738 original size:27 final size:26
Alignment explanation
Indices: 14769708--14769771 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 26
14769698 TTTATCGAGG
14769708 TTATTAATTTATCGATAAATGAATATT
1 TTATTAATTTATCGATAAATGAATA-T
* *
14769735 TTATTAATTTATCGGTAAATTAATAT
1 TTATTAATTTATCGATAAATGAATAT
*
14769761 CTATTAATTTA
1 TTATTAATTTA
14769772 GAGAATATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 11 0.32
27 23 0.68
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.50
Consensus pattern (26 bp):
TTATTAATTTATCGATAAATGAATAT
Found at i:14769898 original size:38 final size:38
Alignment explanation
Indices: 14769853--14769929 Score: 122
Period size: 38 Copynumber: 2.0 Consensus size: 38
14769843 TGAATCAAAG
14769853 TTAATTGGTTCATGTAA-CAACAAA-AAAAAGAGAGTTAA
1 TTAATTGGTTCATGTAACCAA-AAAGAAAAA-AGAGTTAA
14769891 TTAATTGGTTCATGTAACCAAAAAGAAAAAAGAGTTAA
1 TTAATTGGTTCATGTAACCAAAAAGAAAAAAGAGTTAA
14769929 T
1 T
14769930 GGTTTCAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
38 29 0.78
39 8 0.22
ACGTcount: A:0.49, C:0.08, G:0.16, T:0.27
Consensus pattern (38 bp):
TTAATTGGTTCATGTAACCAAAAAGAAAAAAGAGTTAA
Found at i:14777578 original size:15 final size:15
Alignment explanation
Indices: 14777558--14777591 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
14777548 GGTTTCAATC
14777558 ATGTATGATCAA-TAT
1 ATGTATGA-CAAGTAT
14777573 ATGTATGACAAGTAT
1 ATGTATGACAAGTAT
14777588 ATGT
1 ATGT
14777592 GACATTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 3 0.17
15 15 0.83
ACGTcount: A:0.38, C:0.06, G:0.18, T:0.38
Consensus pattern (15 bp):
ATGTATGACAAGTAT
Found at i:14779791 original size:27 final size:27
Alignment explanation
Indices: 14779761--14779871 Score: 134
Period size: 27 Copynumber: 4.1 Consensus size: 27
14779751 AGGCTAGCCC
*
14779761 TTCATAATTTGTCACAAAAGCTTTTCT
1 TTCATAATTTGCCACAAAAGCTTTTCT
* * *
14779788 TTCATGATTCGCCACAAAGGCTTTTCT
1 TTCATAATTTGCCACAAAAGCTTTTCT
*
14779815 TTCAT-ATTTCGCCACAAAAGCTTTCCT
1 TTCATAATTT-GCCACAAAAGCTTTTCT
* * *
14779842 TTCATATTTTGACACAAAGGCTTTTCT
1 TTCATAATTTGCCACAAAAGCTTTTCT
14779869 TTC
1 TTC
14779872 TTGATGTGTT
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
26 3 0.04
27 65 0.92
28 3 0.04
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.41
Consensus pattern (27 bp):
TTCATAATTTGCCACAAAAGCTTTTCT
Found at i:14781358 original size:25 final size:24
Alignment explanation
Indices: 14781311--14781363 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
14781301 GCAGACCGTA
14781311 GCTCTTTATGAGCATCCTAATATAG
1 GCTCTTTATGAGCATCCTAATAT-G
* * * *
14781336 GCTCTTTGTGAGCTTCTTGATATG
1 GCTCTTTATGAGCATCCTAATATG
14781360 GCTC
1 GCTC
14781364 GCTTGAACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (24 bp):
GCTCTTTATGAGCATCCTAATATG
Found at i:14781981 original size:14 final size:14
Alignment explanation
Indices: 14781962--14782001 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
14781952 NNNNNNNNCA
14781962 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
14781976 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
14781990 GGAAAATGTTTT
1 GTAAAATGTTTT
14782002 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:14782010 original size:20 final size:20
Alignment explanation
Indices: 14781985--14782024 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14781975 CGTAAAATGA
*
14781985 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
14782005 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
14782025 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:14782014 original size:34 final size:35
Alignment explanation
Indices: 14781970--14782036 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
14781960 CAGTAAAATG
*
14781970 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
14782004 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
14782037 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:14782040 original size:14 final size:15
Alignment explanation
Indices: 14781964--14782040 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
14781954 NNNNNNCAGT
* *
14781964 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
14781978 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
14781992 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
14782012 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
14782027 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
14782041 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:14784485 original size:18 final size:18
Alignment explanation
Indices: 14784464--14784514 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
14784454 AGGAATGAAG
14784464 GAAGGGAGAAGAATGGAT
1 GAAGGGAGAAGAATGGAT
*** * *
14784482 GAAGGGAGCTTACTAGAT
1 GAAGGGAGAAGAATGGAT
14784500 GAAGGGAGAAGAATG
1 GAAGGGAGAAGAATG
14784515 CCTGAGAGCT
Statistics
Matches: 23, Mismatches: 10, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.41, C:0.04, G:0.41, T:0.14
Consensus pattern (18 bp):
GAAGGGAGAAGAATGGAT
Found at i:14793478 original size:28 final size:25
Alignment explanation
Indices: 14793433--14793489 Score: 62
Period size: 28 Copynumber: 2.2 Consensus size: 25
14793423 AAAATAAAGA
*
14793433 AAAAGATGAAATTGGAAAGTGAAATAAT
1 AAAAGATGAAAATGGAAA---AAATAAT
14793461 AAAAGATGATAAAT-GAAAAAATAAT
1 AAAAGATGA-AAATGGAAAAAATAAT
14793486 AAAA
1 AAAA
14793490 ATATCATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 11 0.41
28 13 0.48
29 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.16, T:0.19
Consensus pattern (25 bp):
AAAAGATGAAAATGGAAAAAATAAT
Found at i:14795151 original size:89 final size:89
Alignment explanation
Indices: 14795000--14795167 Score: 336
Period size: 89 Copynumber: 1.9 Consensus size: 89
14794990 ATGTTCATCC
14795000 AGGATTATAAATTTGTACACTTTGAGTGTATTACCCGTGTGACATTAACATTTCAAATGATTTGT
1 AGGATTATAAATTTGTACACTTTGAGTGTATTACCCGTGTGACATTAACATTTCAAATGATTTGT
14795065 ATATGTTATATGAAACCATGTGTG
66 ATATGTTATATGAAACCATGTGTG
14795089 AGGATTATAAATTTGTACACTTTGAGTGTATTACCCGTGTGACATTAACATTTCAAATGATTTGT
1 AGGATTATAAATTTGTACACTTTGAGTGTATTACCCGTGTGACATTAACATTTCAAATGATTTGT
14795154 ATATGTTATATGAA
66 ATATGTTATATGAA
14795168 TACATGATGT
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 79 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (89 bp):
AGGATTATAAATTTGTACACTTTGAGTGTATTACCCGTGTGACATTAACATTTCAAATGATTTGT
ATATGTTATATGAAACCATGTGTG
Found at i:14798118 original size:17 final size:18
Alignment explanation
Indices: 14798096--14798136 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
14798086 TATTTGATCC
14798096 TTTTAT-CAACTTT-TTCA
1 TTTTATGCAA-TTTGTTCA
*
14798113 TTTTATGCAATTTGTTCC
1 TTTTATGCAATTTGTTCA
14798131 TTTTAT
1 TTTTAT
14798137 AAATTAAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.20, C:0.15, G:0.05, T:0.61
Consensus pattern (18 bp):
TTTTATGCAATTTGTTCA
Found at i:14798136 original size:18 final size:17
Alignment explanation
Indices: 14798087--14798141 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
14798077 TTTCATAGCT
*
14798087 ATTTGATCCTTTTATCA
1 ATTTGTTCCTTTTATCA
*
14798104 ACTTT-TTCATTTTATGCA
1 A-TTTGTTCCTTTTAT-CA
*
14798122 ATTTGTTCCTTTTATAA
1 ATTTGTTCCTTTTATCA
14798139 ATT
1 ATT
14798142 AAACATGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 16 0.52
18 15 0.48
ACGTcount: A:0.24, C:0.15, G:0.05, T:0.56
Consensus pattern (17 bp):
ATTTGTTCCTTTTATCA
Found at i:14805070 original size:24 final size:24
Alignment explanation
Indices: 14805017--14805182 Score: 74
Period size: 24 Copynumber: 6.8 Consensus size: 24
14805007 TGTATAACAA
* *
14805017 GAAGCTCATAAGAGGCATAATCGG
1 GAAGCTCATAAGAGCCATAATCAG
14805041 GAAGCTCATAAGAGCCAATAAT-AG
1 GAAGCTCATAAGAGCC-ATAATCAG
* *** *
14805065 GTAGCTCCGGAGAGCCATTAA-CGG
1 GAAGCTCATAAGAGCCA-TAATCAG
* * * * *
14805089 GAAGCTCTTGATAACCATATATCGG
1 GAAGCTCATAAGAGCCATA-ATCAG
*
14805114 GAAGTTC--AAGCAAGCCAT-ATCAG
1 GAAGCTCATAAG--AGCCATAATCAG
*
14805137 GAAGCTCCA-AAGATCCATTAAATCAG
1 GAAGCT-CATAAGAGCCA-T-AATCAG
*
14805163 GAAGCTCATAAAGAGTCATA
1 GAAGCTCAT-AAGAGCCATA
14805183 TAACGGGACA
Statistics
Matches: 107, Mismatches: 21, Indels: 27
0.69 0.14 0.17
Matches are distributed among these distances:
23 17 0.16
24 47 0.44
25 25 0.23
26 12 0.11
27 6 0.06
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (24 bp):
GAAGCTCATAAGAGCCATAATCAG
Found at i:14813111 original size:12 final size:12
Alignment explanation
Indices: 14813094--14813125 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
14813084 ATGACTACTT
14813094 GAAGAAAATCGA
1 GAAGAAAATCGA
14813106 GAAGAAAATCGA
1 GAAGAAAATCGA
14813118 GAAGAAAA
1 GAAGAAAA
14813126 CTACTTCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.62, C:0.06, G:0.25, T:0.06
Consensus pattern (12 bp):
GAAGAAAATCGA
Found at i:14816900 original size:16 final size:16
Alignment explanation
Indices: 14816874--14816907 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
14816864 ATCATAGGTT
14816874 AATTAATTTAAACCTTA
1 AATTAATTTAAA-CTTA
14816891 AATTAA-TTAAACTTA
1 AATTAATTTAAACTTA
14816906 AA
1 AA
14816908 ACCCTTGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 5 0.29
17 6 0.35
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (16 bp):
AATTAATTTAAACTTA
Found at i:14817903 original size:25 final size:25
Alignment explanation
Indices: 14817869--14817916 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
14817859 TTTTTTTAAA
14817869 ACTTTTATTTAATATTAATATAATT
1 ACTTTTATTTAATATTAATATAATT
14817894 ACTTTTATTTAATATTAATATAA
1 ACTTTTATTTAATATTAATATAA
14817917 AATTTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (25 bp):
ACTTTTATTTAATATTAATATAATT
Found at i:14820959 original size:178 final size:177
Alignment explanation
Indices: 14820623--14820961 Score: 502
Period size: 178 Copynumber: 1.9 Consensus size: 177
14820613 AATTTGGCCG
14820623 TTAATCATTAGACTTATTATTTTGTTGTGTGCCTTAGAACAAATCCATTGCATATTCTGTGACTC
1 TTAATCATTAGACTTATTATTTTGTTGTGTGCCTTAGAACAAATCCATTGCATATTCTGTGACTC
** * * *
14820688 TGATAAAATGTTTTGTTTGCTTTTGTGTTGGTACGAGGTGTTCAGAGAACTAGAAATGTTAAGCT
66 TGATAAAATGTTTTGTTTGCTTTTGTGGCGGTACAAGGTGTTCAGAGAACCAGAAATGTAAAGCT
* *
14820753 TGATCTTCAGTTTAGTTTAGTATATTTAGCTTTATCTGTTTTGGGAA
131 TAATCTTCAGTTTACTTTAGTATATTTAGCTTTATCTGTTTTGGGAA
* * **
14820800 TTAATCTTTCGACTTA-TATTTTTGTTGTGTGTTTTAGAAACAAATCCATTGCATATTCTGTGAC
1 TTAATCATTAGACTTATTA-TTTTGTTGTGTGCCTTAG-AACAAATCCATTGCATATTCTGTGAC
* *
14820864 TGTGATCAAATGTTTTGTTTGCTTTTGTGGCGGTTA-AAGGTGTTCAGAGAACCAGAAATGTAAA
64 TCTGATAAAATGTTTTGTTTGCTTTTGTGGCGG-TACAAGGTGTTCAGAGAACCAGAAATGTAAA
* *
14820928 GCTTAATCTTCTGTTTACTTTAGTTTATTTAGCT
128 GCTTAATCTTCAGTTTACTTTAGTATATTTAGCT
14820962 CTATATATTA
Statistics
Matches: 144, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
176 2 0.01
177 30 0.21
178 110 0.76
179 2 0.01
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (177 bp):
TTAATCATTAGACTTATTATTTTGTTGTGTGCCTTAGAACAAATCCATTGCATATTCTGTGACTC
TGATAAAATGTTTTGTTTGCTTTTGTGGCGGTACAAGGTGTTCAGAGAACCAGAAATGTAAAGCT
TAATCTTCAGTTTACTTTAGTATATTTAGCTTTATCTGTTTTGGGAA
Found at i:14826960 original size:5 final size:5
Alignment explanation
Indices: 14826945--14826980 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
14826935 ATTATGTGCA
*
14826945 AAATT ACATT AAATT AAATT AAATT AAATT AAATT A
1 AAATT AAATT AAATT AAATT AAATT AAATT AAATT A
14826981 TGAATAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (5 bp):
AAATT
Found at i:14829781 original size:78 final size:78
Alignment explanation
Indices: 14829631--14829779 Score: 189
Period size: 78 Copynumber: 1.9 Consensus size: 78
14829621 AAGTTCACAA
* * *
14829631 AAATTAAAAAATATTTACTTTTATTTTTTAAAATATAAAAAAATGTCAAACAAATTAATAAAAAC
1 AAATTAAAAAATA-TTACTTTTATTTTTCAAAATATAAAAAAATGACAAAAAAATT-ATAAAAAC
14829696 CTCAAAAATTTTAAG
64 CTCAAAAATTTTAAG
*
14829711 AAATTAAAAAATA-TATTTTTATTTTTCAAAA-ATAAATAAAAT-ACAAAAAAATGT-TAAAAAC
1 AAATTAAAAAATATTACTTTTATTTTTCAAAATATAAA-AAAATGACAAAAAAAT-TATAAAAAC
*
14829772 TTCAAAAA
64 CTCAAAAA
14829780 AAATCTCAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
76 14 0.23
77 13 0.21
78 22 0.35
80 13 0.21
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.34
Consensus pattern (78 bp):
AAATTAAAAAATATTACTTTTATTTTTCAAAATATAAAAAAATGACAAAAAAATTATAAAAACCT
CAAAAATTTTAAG
Found at i:14832463 original size:22 final size:23
Alignment explanation
Indices: 14832422--14832466 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
14832412 AAGATAGGTT
14832422 AAATTACATAAAAAAATTTTAAA
1 AAATTACATAAAAAAATTTTAAA
14832445 AAATTA-A-AAAATAAATTTTAAA
1 AAATTACATAAAA-AAATTTTAAA
14832467 GAAAATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 11 0.52
23 6 0.29
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (23 bp):
AAATTACATAAAAAAATTTTAAA
Found at i:14836254 original size:51 final size:50
Alignment explanation
Indices: 14836058--14836254 Score: 202
Period size: 51 Copynumber: 3.9 Consensus size: 50
14836048 NNNNNNNNNN
* * *
14836058 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGAACC-GAATGGTAT
* * * * *
14836108 GGTCGCATGTGTAGTACTATGTGCAAGCTACTATGCGT-ACCCG-ATAGTTT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTA--CGTGAACCGAATGGTAT
* * * *
14836158 CGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGTAAT
1 -GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGAACCGAATGGT-AT
* *
14836210 GGTCACATGTGTAGGACTATGTGCAGGCTACTATGTGAACCGAAT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGAACCGAAT
14836255 ATCATTGTTT
Statistics
Matches: 117, Mismatches: 23, Indels: 13
0.76 0.15 0.08
Matches are distributed among these distances:
49 6 0.05
50 33 0.28
51 74 0.63
52 4 0.03
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGAACCGAATGGTAT
Found at i:14836320 original size:45 final size:45
Alignment explanation
Indices: 14836255--14836341 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
14836245 TGAACCGAAT
* * *
14836255 ATCATTGTTTAGTAAAGTGGTTGCTATGTGCTGATTCCACCGGAC
1 ATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCGGAC
*
14836300 ATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
1 ATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCG
14836342 AGTATNNNNN
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (45 bp):
ATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCGGAC
Found at i:14842576 original size:45 final size:45
Alignment explanation
Indices: 14842510--14842629 Score: 132
Period size: 45 Copynumber: 2.7 Consensus size: 45
14842500 TGTTGTGTTT
* * ** * * * *
14842510 CCATAGCGTCTTTCAACTATGGTTTTGTTCGTTTGATTCATGATG
1 CCATAACGTCTTTCAGCTATGGTTTTACTCATTAGAATCATGAAG
* * *
14842555 CCATGATGTCTTTCAGTTATGGTTTTACTCATTAGAATCATGAAG
1 CCATAACGTCTTTCAGCTATGGTTTTACTCATTAGAATCATGAAG
*
14842600 CCATAACGTCTTTCAGCTATGGTCTTACTC
1 CCATAACGTCTTTCAGCTATGGTTTTACTC
14842630 GTTTCTGGTA
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (45 bp):
CCATAACGTCTTTCAGCTATGGTTTTACTCATTAGAATCATGAAG
Found at i:14842680 original size:45 final size:45
Alignment explanation
Indices: 14842607--14842724 Score: 146
Period size: 45 Copynumber: 2.6 Consensus size: 45
14842597 AAGCCATAAC
* * * *
14842607 GTCTTTCAGCTATGGTCTTACTCGTTTCTGGTATGGTGCCATAGT
1 GTCTTTCAACTATGGTCTTACTCATTTCTGATATAGTGCCATAGT
* * *
14842652 GTCTTTCAACTATGGTCTTATTTATTTCTGATATAGTGTCATAGT
1 GTCTTTCAACTATGGTCTTACTCATTTCTGATATAGTGCCATAGT
* * *
14842697 ATCTTTTAACTATGGTCTTAATCATTTC
1 GTCTTTCAACTATGGTCTTACTCATTTC
14842725 CTTTAAGCCA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (45 bp):
GTCTTTCAACTATGGTCTTACTCATTTCTGATATAGTGCCATAGT
Found at i:14849058 original size:29 final size:29
Alignment explanation
Indices: 14848990--14849065 Score: 68
Period size: 29 Copynumber: 2.7 Consensus size: 29
14848980 TACATGAACT
*
14848990 TATAATATATATACATGGGGTTTATTTTG
1 TATAATATATATACATGGGGTTTATTATG
*** * *
14849019 TATACCGTATATATATTGGGTGTTA-TATG
1 TATAATATATATACATGGGGT-TTATTATG
14849048 TATAATATATA-A-ATGGGG
1 TATAATATATATACATGGGG
14849066 GATTTGGTAA
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 27 0.75
30 3 0.08
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (29 bp):
TATAATATATATACATGGGGTTTATTATG
Found at i:14849692 original size:18 final size:18
Alignment explanation
Indices: 14849656--14849694 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
14849646 TTTGGTAATA
*
14849656 TGTATTAATATGGCGAAC
1 TGTATTAATATGGCAAAC
* *
14849674 TGTATTAATTTGTCAAAC
1 TGTATTAATATGGCAAAC
14849692 TGT
1 TGT
14849695 GTATTGTGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (18 bp):
TGTATTAATATGGCAAAC
Found at i:14850389 original size:17 final size:18
Alignment explanation
Indices: 14850355--14850401 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
14850345 TATATACTAA
*
14850355 ATGAACTGTTA-AATTGT
1 ATGAACTGTTATTATTGT
14850372 ATGAACTGTTATTA-TGT
1 ATGAACTGTTATTATTGT
*
14850389 ATAAACTGTTATT
1 ATGAACTGTTATT
14850402 TCATATGAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 26 0.96
18 1 0.04
ACGTcount: A:0.34, C:0.06, G:0.15, T:0.45
Consensus pattern (18 bp):
ATGAACTGTTATTATTGT
Found at i:14856853 original size:9 final size:10
Alignment explanation
Indices: 14856828--14856863 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
14856818 CCCCAAATAG
14856828 AATTTTTAAT
1 AATTTTTAAT
14856838 AATTTTTAAT
1 AATTTTTAAT
*
14856848 AATTTTAAAT
1 AATTTTTAAT
14856858 ATATTT
1 A-ATTT
14856864 ATTTATTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 20 0.83
11 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
AATTTTTAAT
Found at i:14860617 original size:36 final size:36
Alignment explanation
Indices: 14860496--14860614 Score: 141
Period size: 36 Copynumber: 3.3 Consensus size: 36
14860486 ATACTCTATG
* *
14860496 TTTGGTGTGTTTCGGAGGGACTAGCTCTTTTAAGCA
1 TTTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
* **
14860532 TCTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
1 TTTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
* * * * *
14860568 -TTGGTGTGTTTTGGAGGGATTGGCTCGTGTGAGCA
1 TTTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
14860603 TTTGGTGTGTTT
1 TTTGGTGTGTTT
14860615 TGGCTAGACT
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
35 27 0.39
36 42 0.61
ACGTcount: A:0.13, C:0.12, G:0.34, T:0.41
Consensus pattern (36 bp):
TTTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
Found at i:14864368 original size:136 final size:136
Alignment explanation
Indices: 14864124--14865598 Score: 2914
Period size: 136 Copynumber: 10.8 Consensus size: 136
14864114 CATTACTCAA
14864124 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
1 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
14864189 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
66 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
14864254 CATGTT
131 CATGTT
14864260 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
1 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
14864325 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
66 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
14864390 CATGTT
131 CATGTT
14864396 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
1 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
14864461 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
66 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
14864526 CATGTT
131 CATGTT
14864532 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
1 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
14864597 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
66 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
14864662 CATGTT
131 CATGTT
14864668 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
1 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
14864733 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
66 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
14864798 CATGTT
131 CATGTT
14864804 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
1 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
14864869 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
66 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
14864934 CATGTT
131 CATGTT
14864940 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
1 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
14865005 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
66 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
14865070 CATGTT
131 CATGTT
14865076 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
1 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
14865141 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
66 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
14865206 CATGTT
131 CATGTT
14865212 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
1 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
14865277 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
66 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
14865342 CATGTT
131 CATGTT
14865348 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
1 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
14865413 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
66 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
14865478 CATGTT
131 CATGTT
*
14865484 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTTTTTCCAACCATTTTC
1 TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
* * *
14865549 ACCTTTAGTACATTTGTACACCTTCCAAACAATGTATTTTAAACCTACAT
66 ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACAT
14865599 TTCTAAACCT
Statistics
Matches: 1335, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
136 1335 1.00
ACGTcount: A:0.34, C:0.22, G:0.06, T:0.38
Consensus pattern (136 bp):
TTTCCCTAATATACATTTTACAAACATATTAGCTAAGTTCATAATCACTCTTTCCAACCATTTTC
ACCTTTAGTGCATTTGTACACCTTCTAAACGATGTATTTTAAACCTACATAAAAACATGTTCAAA
CATGTT
Found at i:14867514 original size:26 final size:26
Alignment explanation
Indices: 14867484--14867583 Score: 121
Period size: 26 Copynumber: 3.8 Consensus size: 26
14867474 CTAATATCAT
* *
14867484 AGCAAAGCTGTCAGTAATAGTAACAC
1 AGCAAAGCTGCCAGTAACAGTAACAC
* *
14867510 AGCAAAGTTGCTAGTAACAGTAACAC
1 AGCAAAGCTGCCAGTAACAGTAACAC
* * *
14867536 AGCAAAGTTGCCAGTATCAATAACGA-
1 AGCAAAGCTGCCAGTAACAGTAAC-AC
14867562 AGCAAAGCTGCCAGTAACAGTA
1 AGCAAAGCTGCCAGTAACAGTA
14867584 TTTGTCGCAA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 62 0.98
27 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (26 bp):
AGCAAAGCTGCCAGTAACAGTAACAC
Found at i:14867814 original size:26 final size:27
Alignment explanation
Indices: 14867770--14868115 Score: 208
Period size: 27 Copynumber: 12.9 Consensus size: 27
14867760 TTTACCCTAT
* *
14867770 GAGGGTATTTTAGTCATTTTACCTTTC
1 GAGGGTATTTTGGTAATTTTACCTTTC
*
14867797 G-GGGTATTTTGGTTATTTTACCCTTT-
1 GAGGGTATTTTGGTAATTTTA-CCTTTC
** *
14867823 GAGGGTATTTCAGTAATTTTACCCTAT-
1 GAGGGTATTTTGGTAATTTTA-CCTTTC
* * * **
14867850 GGGGGTATTTCGATAATTTTACCCATC
1 GAGGGTATTTTGGTAATTTTACCTTTC
14867877 GAGGGT-TTTTCGGTAATTTTACCTTTC
1 GAGGGTATTTT-GGTAATTTTACCTTTC
* * * * *
14867904 AAAGGTATTTCGATAATTTTACCCTAT-
1 GAGGGTATTTTGGTAATTTTA-CCTTTC
* * * ***
14867931 GAGGGTATTTCGATAACTTTACCCGCC
1 GAGGGTATTTTGGTAATTTTACCTTTC
* * * *
14867958 GAGAGTATTTCGGTAATTCTACCCTTC
1 GAGGGTATTTTGGTAATTTTACCTTTC
* *
14867985 AAGGGT-TTTTCGATAACTTTT-CCTTAT-
1 GAGGGTATTTT-GGTAA-TTTTACCTT-TC
* **
14868012 GAGGGTATTTCGGTAATTTTACCCATC
1 GAGGGTATTTTGGTAATTTTACCTTTC
* *
14868039 GAGGGTACTTCT-GTAATTTTACCCTTC
1 GAGGGTA-TTTTGGTAATTTTACCTTTC
* * *
14868066 GACGGTATTTTGATAATTTTA-CTCATC
1 GAGGGTATTTTGGTAATTTTACCT-TTC
*
14868093 GAGGGTATTTTGGTCATTTTACC
1 GAGGGTATTTTGGTAATTTTACC
14868116 ATAATTTGCA
Statistics
Matches: 248, Mismatches: 54, Indels: 33
0.74 0.16 0.10
Matches are distributed among these distances:
26 39 0.16
27 192 0.77
28 17 0.07
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.42
Consensus pattern (27 bp):
GAGGGTATTTTGGTAATTTTACCTTTC
Found at i:14867930 original size:81 final size:81
Alignment explanation
Indices: 14867758--14868102 Score: 385
Period size: 81 Copynumber: 4.3 Consensus size: 81
14867748 TATAACAGTC
* * ** * *
14867758 ATTTTACCCTATGAGGGTATTT-TAGTCATTTTACCTTTCG-GGGTATTTTGGTTATTTTACCCT
1 ATTTTACCCTATGAGGGTATTTCGA-TAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCT
**
14867821 TTGAGGGTATTTC-AGTA
65 TCAAGGGTATTTCGA-TA
* * *
14867838 ATTTTACCCTATGGGGGTATTTCGATAATTTTACCCATCGAGGGTTTTTCGGTAATTTTACCTTT
1 ATTTTACCCTATGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCTT
*
14867903 CAAAGGTATTTCGATA
66 CAAGGGTATTTCGATA
* ** * *
14867919 ATTTTACCCTATGAGGGTATTTCGATAACTTTACCCGCCGAGAGTATTTCGGTAATTCTACCCTT
1 ATTTTACCCTATGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCTT
*
14867984 CAAGGGTTTTTCGATA
66 CAAGGGTATTTCGATA
* * * *
14868000 ACTTTT-CCTTATGAGGGTATTTCGGTAATTTTACCCATCGAGGGTACTTCTGTAATTTTACCCT
1 A-TTTTACCCTATGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCT
* * *
14868064 TCGACGGTATTTTGATA
65 TCAAGGGTATTTCGATA
*
14868081 ATTTTACTC-ATCGAGGGTATTT
1 ATTTTACCCTAT-GAGGGTATTT
14868103 TGGTCATTTT
Statistics
Matches: 222, Mismatches: 37, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
80 39 0.18
81 178 0.80
82 5 0.02
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (81 bp):
ATTTTACCCTATGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCTT
CAAGGGTATTTCGATA
Found at i:14868112 original size:54 final size:54
Alignment explanation
Indices: 14867758--14868115 Score: 293
Period size: 54 Copynumber: 6.6 Consensus size: 54
14867748 TATAACAGTC
* * * * * *
14867758 ATTTTACCCTAT-GAGGGTATTTTAGTCATTTTACCTTTCG-GGGTATTTTGGTT
1 ATTTTACCC-ATCGAGGGTATTTTGGTAATTTTACCCTTCGAGGGTATTTCGATA
* * ** *
14867811 ATTTTACCCTTTGAGGGTATTTCAGTAATTTTACCCTAT-GGGGGTATTTCGATA
1 ATTTTACCCATCGAGGGTATTTTGGTAATTTTACCCT-TCGAGGGTATTTCGATA
* * *
14867865 ATTTTACCCATCGAGGGT-TTTTCGGTAATTTTACCTTTCAAAGGTATTTCGATA
1 ATTTTACCCATCGAGGGTATTTT-GGTAATTTTACCCTTCGAGGGTATTTCGATA
* * * ** * *
14867919 ATTTTACCCTAT-GAGGGTATTTCGATAACTTTACCCGCCGAGAGTATTTCGGTA
1 ATTTTACCC-ATCGAGGGTATTTTGGTAATTTTACCCTTCGAGGGTATTTCGATA
* * * * * *
14867973 ATTCTACCCTTCAAGGGT-TTTTCGATAACTTTT--CCTTATGAGGGTATTTCGGTA
1 ATTTTACCCATCGAGGGTATTTT-GGTAA-TTTTACCCTT-CGAGGGTATTTCGATA
* * *
14868027 ATTTTACCCATCGAGGGTACTTCT-GTAATTTTACCCTTCGACGGTATTTTGATA
1 ATTTTACCCATCGAGGGTA-TTTTGGTAATTTTACCCTTCGAGGGTATTTCGATA
* *
14868081 ATTTTACTCATCGAGGGTATTTTGGTCATTTTACC
1 ATTTTACCCATCGAGGGTATTTTGGTAATTTTACC
14868116 ATAATTTGCA
Statistics
Matches: 243, Mismatches: 46, Indels: 31
0.76 0.14 0.10
Matches are distributed among these distances:
52 1 0.00
53 49 0.20
54 178 0.73
55 12 0.05
56 3 0.01
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (54 bp):
ATTTTACCCATCGAGGGTATTTTGGTAATTTTACCCTTCGAGGGTATTTCGATA
Found at i:14875376 original size:26 final size:26
Alignment explanation
Indices: 14875347--14875448 Score: 100
Period size: 26 Copynumber: 4.0 Consensus size: 26
14875337 ACACCAATAT
14875347 CGCAGCAAAGCTGCCAGTAATAGTAA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
* * *
14875373 CGCAACAAAGTTGCCAGTAACAGTAA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
* * * *
14875399 CGCAGTAGAGCTG-AAGT-ATCAATAA
1 CGCAGCAAAGCTGCCAGTAAT-AGTAA
* *
14875424 TGCAGCAAAGCTGCGAGTAATAGTA
1 CGCAGCAAAGCTGCCAGTAATAGTA
14875449 TTTGTGGCAA
Statistics
Matches: 58, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
24 1 0.02
25 17 0.29
26 38 0.66
27 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.18
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAATAGTAA
Found at i:14875686 original size:27 final size:26
Alignment explanation
Indices: 14875656--14875995 Score: 198
Period size: 27 Copynumber: 12.7 Consensus size: 26
14875646 CCCTATGGGT
* *
14875656 TATTTTAGTCATTTTATCCTTTGAGGG
1 TATTTTGGTAATTTTA-CCTTTGAGGG
*
14875683 TATTTTGGTAATTTTACCTTTTAGGGG
1 TATTTTGGTAATTTTACCTTTGA-GGG
* *
14875710 TATGTTGGTAATTTTACCCTATG-GGG
1 TATTTTGGTAATTTTA-CCTTTGAGGG
* * * *
14875736 TATTTCGATAATTTTACCCATCGAGGG
1 TATTTTGGTAATTTTA-CCTTTGAGGG
** * **
14875763 TATTTCAGTAATTTTACCCATCAAGGG
1 TATTTTGGTAATTTTA-CCTTTGAGGG
* *
14875790 TATTTCGATAATTTTACCTTTCGAGGG
1 TATTTTGGTAATTTTACCTTT-GAGGG
* * * *
14875817 TATTTCGATAATTTTACCCTATAAGGG
1 TATTTTGGTAATTTTA-CCTTTGAGGG
* * * *
14875844 TATTTCGATAATTTTACCCGTCGAGGG
1 TATTTTGGTAATTTTA-CCTTTGAGGG
* **
14875871 TATTTTGATAA-TTTACCCTTCAAGGG
1 TATTTTGGTAATTTTA-CCTTTGAGGG
* * * *
14875897 TATTTCGATAACTTTACCCTATGAGGG
1 TATTTTGGTAATTTTA-CCTTTGAGGG
* * *
14875924 TATTTTAGTAATTTTACCTATCGAGAG
1 TATTTTGGTAATTTTACCT-TTGAGGG
** * *
14875951 TATTTCAGTAATTTTACCCATCGAGGG
1 TATTTTGGTAATTTTA-CCTTTGAGGG
* *
14875978 TATTTCGGTCATTTTACC
1 TATTTTGGTAATTTTACC
14875996 ATAATTCGCA
Statistics
Matches: 260, Mismatches: 45, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
26 57 0.22
27 193 0.74
28 10 0.04
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (26 bp):
TATTTTGGTAATTTTACCTTTGAGGG
Found at i:14875805 original size:107 final size:106
Alignment explanation
Indices: 14875679--14875995 Score: 383
Period size: 107 Copynumber: 3.0 Consensus size: 106
14875669 TTATCCTTTG
* * *
14875679 AGGGTATTTTGGTAATTTTACCTTTTAGGGGTATGTTGGTAATTTTACCCTAT-GGGGTATTTCG
1 AGGGTATTTCGATAATTTTACCTTTGA-GGGTAT-TTGGTAATTTTACCCTATAGGGGTATTTCG
14875743 ATAATTTTACCCATCGAGGGTATTTCAGTAATTTTACCCATCA
64 ATAATTTTACCCATCGAGGGTATTTCAGTAATTTTACCCATCA
* *
14875786 AGGGTATTTCGATAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTATAAGGGTATTTCG
1 AGGGTATTTCGATAATTTTACCTTT-GAGGGTATTT-GGTAATTTTACCCTATAGGGGTATTTCG
* * *
14875851 ATAATTTTACCCGTCGAGGGTATTT-TGATAA-TTTACCCTTCA
64 ATAATTTTACCCATCGAGGGTATTTCAG-TAATTTTACCCATCA
* * * * *
14875893 AGGGTATTTCGATAACTTTACCCTATGAGGGTATTTTAGTAATTTTA-CCTATCGAGAGTATTTC
1 AGGGTATTTCGATAATTTTA-CCTTTGAGGGTA-TTTGGTAATTTTACCCTATAG-GGGTATTTC
* *
14875957 -AGTAATTTTACCCATCGAGGGTATTTCGGTCATTTTACC
63 GA-TAATTTTACCCATCGAGGGTATTTCAGTAATTTTACC
14875996 ATAATTCGCA
Statistics
Matches: 182, Mismatches: 18, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
106 8 0.04
107 122 0.67
108 52 0.29
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (106 bp):
AGGGTATTTCGATAATTTTACCTTTGAGGGTATTTGGTAATTTTACCCTATAGGGGTATTTCGAT
AATTTTACCCATCGAGGGTATTTCAGTAATTTTACCCATCA
Found at i:14875806 original size:54 final size:54
Alignment explanation
Indices: 14875717--14875995 Score: 331
Period size: 54 Copynumber: 5.2 Consensus size: 54
14875707 GGGTATGTTG
*
14875717 GTAATTTTACCC-T-ATGGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCA
1 GTAATTTTACCCATCA-AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCA
**
14875770 GTAATTTTACCCATCAAGGGTATTTCGATAATTTTACCTTTCGAGGGTATTTC-
1 GTAATTTTACCCATCAAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCA
* *
14875823 GATAATTTTACCCTAT-AAGGGTATTTCGATAATTTTACCCGTCGAGGGTATTT-T
1 G-TAATTTTACCC-ATCAAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCA
* * *
14875877 GATAA-TTTACCCTTCAAGGGTATTTCGATAACTTTACCCTAT-GAGGGTATTTTA
1 G-TAATTTTACCCATCAAGGGTATTTCGATAATTTTACCC-ATCGAGGGTATTTCA
* * * *
14875931 GTAATTTTACCTATCGAGAGTATTTC-AGTAATTTTACCCATCGAGGGTATTTCG
1 GTAATTTTACCCATCAAGGGTATTTCGA-TAATTTTACCCATCGAGGGTATTTCA
*
14875985 GTCATTTTACC
1 GTAATTTTACC
14875996 ATAATTCGCA
Statistics
Matches: 198, Mismatches: 17, Indels: 21
0.84 0.07 0.09
Matches are distributed among these distances:
52 1 0.01
53 59 0.30
54 135 0.68
55 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (54 bp):
GTAATTTTACCCATCAAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCA
Found at i:14875847 original size:81 final size:81
Alignment explanation
Indices: 14875666--14875995 Score: 361
Period size: 80 Copynumber: 4.1 Consensus size: 81
14875656 TATTTTAGTC
* * ** * ** *
14875666 ATTTTATCCTTTGAGGGTATTTTGGTAATTTTA-CCTTTTAGGGGTATGTT-GGTAATTTTACCC
1 ATTTTACCCTATGAGGGTATTTCAGTAATTTTACCCATCGA-GGGTAT-TTCGATAATTTTACCC
14875729 TAT-G-GGGTATTTCGATA
64 T-TCGAGGGTATTTCGATA
* *
14875746 ATTTTACCC-ATCGAGGGTATTTCAGTAATTTTACCCATCAAGGGTATTTCGATAATTTTACCTT
1 ATTTTACCCTAT-GAGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCT
14875810 TCGAGGGTATTTCGATA
65 TCGAGGGTATTTCGATA
* * *
14875827 ATTTTACCCTATAAGGGTATTTC-GATAATTTTACCCGTCGAGGGTATTTTGATAA-TTTACCCT
1 ATTTTACCCTATGAGGGTATTTCAG-TAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCT
*
14875890 TCAAGGGTATTTCGATA
65 TCGAGGGTATTTCGATA
* * * * *
14875907 ACTTTACCCTATGAGGGTATTTTAGTAATTTTACCTATCGAGAGTATTTC-AGTAATTTTACCCA
1 ATTTTACCCTATGAGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGA-TAATTTTACCCT
* *
14875971 TCGAGGGTATTTCGGTC
65 TCGAGGGTATTTCGATA
14875988 ATTTTACC
1 ATTTTACC
14875996 ATAATTCGCA
Statistics
Matches: 213, Mismatches: 27, Indels: 19
0.82 0.10 0.07
Matches are distributed among these distances:
79 5 0.02
80 114 0.54
81 92 0.43
82 2 0.01
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (81 bp):
ATTTTACCCTATGAGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCTT
CGAGGGTATTTCGATA
Found at i:14876697 original size:20 final size:21
Alignment explanation
Indices: 14876665--14876705 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
14876655 CCAGAAAGAA
14876665 GAGAAGAAGATGAAAAGAGAG
1 GAGAAGAAGATGAAAAGAGAG
*
14876686 GAGAAG-AGATGAGAAGAGAG
1 GAGAAGAAGATGAAAAGAGAG
14876706 AATTTGGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.54, C:0.00, G:0.41, T:0.05
Consensus pattern (21 bp):
GAGAAGAAGATGAAAAGAGAG
Found at i:14880264 original size:50 final size:50
Alignment explanation
Indices: 14880032--14880266 Score: 253
Period size: 50 Copynumber: 4.7 Consensus size: 50
14880022 AGATGTCAAA
* * * *
14880032 GCCATGTCCCAGACATGGTCTTACATGAGA--TGTT-TCTTGAACTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATC-T-CAGTGCCAAT
* * * ** * * *
14880081 GCCATATCCCAAATATGGTCTTACATGGGAGTTCTTATATCAATGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCAGTGCCAAT
* *
14880131 GCCATGTCCCAGACATGGTCTTACAGGGGACCT-TTCATCTCAGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTT-ATCTCAGTGCCAAT
* * * *
14880181 GCCATGTCCCAGGCATAGTCTTACATGAGACCTCTTATCTCGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCAGTGCCAAT
14880231 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
14880267 TACCCAAATG
Statistics
Matches: 153, Mismatches: 28, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
49 28 0.18
50 118 0.77
51 6 0.04
52 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCAGTGCCAAT
Found at i:14884439 original size:29 final size:29
Alignment explanation
Indices: 14884407--14884484 Score: 129
Period size: 29 Copynumber: 2.7 Consensus size: 29
14884397 TGAACATTTA
14884407 GAATTTAGTTTTTTTATTTTTATTTTCAG
1 GAATTTAGTTTTTTTATTTTTATTTTCAG
* *
14884436 GAATTTAATTTTTTTATTTTTATTTTTAG
1 GAATTTAGTTTTTTTATTTTTATTTTCAG
*
14884465 GAATTTAGTTTCTTTATTTT
1 GAATTTAGTTTTTTTATTTT
14884485 AGATATCAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.22, C:0.03, G:0.09, T:0.67
Consensus pattern (29 bp):
GAATTTAGTTTTTTTATTTTTATTTTCAG
Found at i:14886281 original size:4 final size:4
Alignment explanation
Indices: 14886253--14886295 Score: 50
Period size: 4 Copynumber: 10.2 Consensus size: 4
14886243 AAATGAAAGC
* *
14886253 ATAA ATCA ATAA ACAA ATGAA ATAA ATAA ATAA ATAA TATAA A
1 ATAA ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA -ATAA A
14886296 GAATAAAAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
4 25 0.76
5 8 0.24
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (4 bp):
ATAA
Found at i:14887619 original size:44 final size:44
Alignment explanation
Indices: 14887303--14887677 Score: 168
Period size: 44 Copynumber: 8.7 Consensus size: 44
14887293 TCTTGAGTCT
*** *
14887303 GCTCCACTGCAACTTCAGGGAGATAAGACCCG-ATAC---AATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAGTA-ACTTTAATCC
* ** * *
14887344 GCT-CTCTGCAACTTCAAAGAGATAAGATCT-GTGATTTTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGAT-TAGTAACTTTAATCC
* * * * ** *
14887387 ACTCCACTGCAACTTCAAGGAGATAGGATTATTGGCTTTAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTTTAATCC
* * * * * * * *
14887431 GCTCCTCTGCAACTTCAGAGAGATAAGATTCGCCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAG-TAACTTTAATCC
* * * * * *
14887476 G-TCTTACTACAACTTCA-GGAGGATAAGGCTT-GTTTAC-TTAGTCT
1 GCTC-CACTGCAACTTCAGGGA-GATAA-GATTAG-TAACTTTAATCC
* * *** *
14887520 GCTCCACTGCAAATTCAGGGAGATAAGACTAG--A-TGCGATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTTTAATCC
* * *
14887561 GCT-CTCTGCAACTTCAGAGAGATAAGATCT-GTAATTTTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGAT-TAGTAACTTTAATCC
* * * ** *
14887604 GCTCCATTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTTTAATCC
14887648 GCTCCACTGCAACTTCAGGGAGATAAGATT
1 GCTCCACTGCAACTTCAGGGAGATAAGATT
14887678 CGCCATCTTC
Statistics
Matches: 247, Mismatches: 66, Indels: 39
0.70 0.19 0.11
Matches are distributed among these distances:
40 45 0.18
41 11 0.04
42 1 0.00
43 17 0.07
44 140 0.57
45 30 0.12
46 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATTAGTAACTTTAATCC
Found at i:14887673 original size:217 final size:218
Alignment explanation
Indices: 14887271--14887692 Score: 695
Period size: 217 Copynumber: 1.9 Consensus size: 218
14887261 CCACTGCAAT
* * *
14887271 TTCAGGGGGATAAGACTTGATTTCTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCCGA
1 TTCAGGAGGATAAGACTTGATTTCTTGAGTCTGCTCCACTGCAAATTCAGGGAGATAAGACCAGA
*
14887336 TACAATCTGCTCTCTGCAACTTCAAAGAGATAAGATCTGTGATTTTAATCCACTCCACTGCAACT
66 TACAATCTGCTCTCTGCAACTTCAAAGAGATAAGATCTGTAATTTTAATCCACTCCACTGCAACT
*
14887401 TCAAGGAGATAGGATTATTGGCTTTAATCTGCTCCTCTGCAACTTCAGAGAGATAAGATTCGCCA
131 TCAAGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGCCA
14887466 TCTTCAGTCTGTCTTACTACAAC
196 TCTTCAGTCTGTCTTACTACAAC
* *
14887489 TTCAGGAGGATAAGGCTTG-TTTACTT-AGTCTGCTCCACTGCAAATTCAGGGAGATAAGACTAG
1 TTCAGGAGGATAAGACTTGATTT-CTTGAGTCTGCTCCACTGCAAATTCAGGGAGATAAGACCAG
* * * * *
14887552 ATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCATTGCAAC
65 ATACAATCTGCTCTCTGCAACTTCAAAGAGATAAGATCTGTAATTTTAATCCACTCCACTGCAAC
* *
14887617 TTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
130 TTCAAGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGCC
14887682 ATCTTCAGTCT
195 ATCTTCAGTCT
14887693 TTTAAATTGC
Statistics
Matches: 189, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
217 169 0.89
218 20 0.11
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (218 bp):
TTCAGGAGGATAAGACTTGATTTCTTGAGTCTGCTCCACTGCAAATTCAGGGAGATAAGACCAGA
TACAATCTGCTCTCTGCAACTTCAAAGAGATAAGATCTGTAATTTTAATCCACTCCACTGCAACT
TCAAGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGCCA
TCTTCAGTCTGTCTTACTACAAC
Found at i:14888105 original size:44 final size:44
Alignment explanation
Indices: 14888057--14888193 Score: 240
Period size: 44 Copynumber: 3.1 Consensus size: 44
14888047 TGTTGCTCAA
* *
14888057 GGAGATAGGATTCACAATCTTCAACCTATTTCACTACTGACCAG
1 GGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAG
14888101 GGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCTGACCAG
1 GGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTGACCAG
14888145 GGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAG
1 GGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAG
14888189 GGAGA
1 GGAGA
14888194 AAAACTTTGT
Statistics
Matches: 89, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
43 2 0.02
44 85 0.96
45 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.25
Consensus pattern (44 bp):
GGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAG
Found at i:14889460 original size:7 final size:6
Alignment explanation
Indices: 14889448--14889499 Score: 61
Period size: 6 Copynumber: 8.3 Consensus size: 6
14889438 CATTTTCGTC
*
14889448 TTCTTCT TTCTTCT TTCTTT TTCTTCT TTC-TT TTCTTT TTCTTT TCCTTT
1 TTCTT-T TTCTT-T TTCTTT TTCTT-T TTCTTT TTCTTT TTCTTT TTCTTT
14889498 TT
1 TT
14889500 TCCATCATCA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
5 4 0.10
6 21 0.51
7 16 0.39
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (6 bp):
TTCTTT
Found at i:14889462 original size:13 final size:12
Alignment explanation
Indices: 14889446--14889493 Score: 66
Period size: 11 Copynumber: 4.2 Consensus size: 12
14889436 CTCATTTTCG
14889446 TCTTC-TTC-TT
1 TCTTCTTTCTTT
14889456 TCTTCTTTCTTTT
1 TCTTCTTTC-TTT
14889469 TCTTCTTTCTTT
1 TCTTCTTTCTTT
14889481 TCTT-TTTCTTT
1 TCTTCTTTCTTT
14889492 TC
1 TC
14889494 CTTTTTTCCA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.14
11 12 0.34
12 7 0.20
13 11 0.31
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (12 bp):
TCTTCTTTCTTT
Found at i:14889471 original size:17 final size:19
Alignment explanation
Indices: 14889446--14889491 Score: 62
Period size: 17 Copynumber: 2.6 Consensus size: 19
14889436 CTCATTTTCG
*
14889446 TCTTCTTCTTTC-TTC-TT
1 TCTTTTTCTTTCTTTCTTT
14889463 TCTTTTTC-TTCTTTCTTT
1 TCTTTTTCTTTCTTTCTTT
14889481 TCTTTTTCTTT
1 TCTTTTTCTTT
14889492 TCCTTTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 3 0.12
17 10 0.40
18 10 0.40
19 2 0.08
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (19 bp):
TCTTTTTCTTTCTTTCTTT
Found at i:14889471 original size:20 final size:18
Alignment explanation
Indices: 14889448--14889490 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
14889438 CATTTTCGTC
14889448 TTCTTCTTTCTTCTTTCTTT
1 TTCTTCTTTC-T-TTTCTTT
14889468 TTCTTCTTTCTTTTCTTT
1 TTCTTCTTTCTTTTCTTT
14889486 TTCTT
1 TTCTT
14889491 TTCCTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 12 0.52
19 1 0.04
20 10 0.43
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (18 bp):
TTCTTCTTTCTTTTCTTT
Found at i:14897850 original size:210 final size:210
Alignment explanation
Indices: 14897488--14897908 Score: 808
Period size: 210 Copynumber: 2.0 Consensus size: 210
14897478 TTTCGCTTTA
14897488 TCTTTTTTCTTGGGCGGTGGCTCTGAGGAATTCTCCAAATTGTATGCATTAATGGACAATATATG
1 TCTTTTTTCTTGGGCGGTGGCTCTGAGGAATTCTCCAAATTGTATGCATTAATGGACAATATATG
14897553 ATTGATGGGTTCAAAACAAATTCCAAAATTTCGTTTATTCACTCTAGTCTCTACACAACACATTA
66 ATTGATGGGTTCAAAACAAATTCCAAAATTTCGTTTATTCACTCTAGTCTCTACACAACACATTA
14897618 CTTTTGTTTTTCAAGGAAAGCACAACACATTACTTATACATG-AAAAAAAAAAGGAATAATGTAA
131 CTTTTGTTTTTCAAGGAAAGCACAACACATTACTTATACATGAAAAAAAAAAAGGAATAATGT-A
14897682 AAAAGGAGTTGTCTTC
195 AAAAGGAGTTGTCTTC
14897698 TCTTTTTTCTTGGGCGGTGGCTCTGAGGAATTCTCCAAATTGTATGCATTAATGGACAATATATG
1 TCTTTTTTCTTGGGCGGTGGCTCTGAGGAATTCTCCAAATTGTATGCATTAATGGACAATATATG
14897763 ATTGATGGGTTCAAAACAAATTCCAAAATTTCGTTTATTCACTCTAGTCTCTACACAACACATTA
66 ATTGATGGGTTCAAAACAAATTCCAAAATTTCGTTTATTCACTCTAGTCTCTACACAACACATTA
* *
14897828 CTTTTGTTTTTCAAGGAAAGCACAACACATTACTTATACATGAAAAAAAAAAAGGATTAATGTAC
131 CTTTTGTTTTTCAAGGAAAGCACAACACATTACTTATACATGAAAAAAAAAAAGGAATAATGTAA
14897893 AAAGGAGTTGTCTTC
196 AAAGGAGTTGTCTTC
14897908 T
1 T
14897909 TTGGTTTACC
Statistics
Matches: 208, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
210 189 0.91
211 19 0.09
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (210 bp):
TCTTTTTTCTTGGGCGGTGGCTCTGAGGAATTCTCCAAATTGTATGCATTAATGGACAATATATG
ATTGATGGGTTCAAAACAAATTCCAAAATTTCGTTTATTCACTCTAGTCTCTACACAACACATTA
CTTTTGTTTTTCAAGGAAAGCACAACACATTACTTATACATGAAAAAAAAAAAGGAATAATGTAA
AAAGGAGTTGTCTTC
Found at i:14898194 original size:15 final size:15
Alignment explanation
Indices: 14898159--14898286 Score: 62
Period size: 15 Copynumber: 7.9 Consensus size: 15
14898149 CTTCTTCTTC
14898159 TCTTCCTCTTTCTTGGGT
1 TCTTCCT-TTT-TT-GGT
14898177 TCTTCCTTTTTTGGT
1 TCTTCCTTTTTTGGT
* * *
14898192 TCTTCCTTCTTAGGC
1 TCTTCCTTTTTTGGT
*
14898207 TCTT-CTTTCTTCTGCTCT
1 TCTTCCTTT-TT-TG--GT
* *
14898225 TCTTCCTTCTTGGGT
1 TCTTCCTTTTTTGGT
*
14898240 TCTT-CTTTCTTTGGC
1 TCTTCCTTT-TTTGGT
*
14898255 TCCTCCTCTTTCTTGGGT
1 TCTTCCT-TTT-TT-GGT
*
14898273 TCTTCCTTCTTTGG
1 TCTTCCTTTTTTGG
14898287 CTCCTTCTTC
Statistics
Matches: 83, Mismatches: 17, Indels: 23
0.67 0.14 0.19
Matches are distributed among these distances:
14 6 0.07
15 35 0.42
16 8 0.10
17 10 0.12
18 21 0.25
19 3 0.04
ACGTcount: A:0.01, C:0.29, G:0.14, T:0.56
Consensus pattern (15 bp):
TCTTCCTTTTTTGGT
Found at i:14898210 original size:48 final size:48
Alignment explanation
Indices: 14898144--14898286 Score: 155
Period size: 48 Copynumber: 3.0 Consensus size: 48
14898134 CTTTTTCTCC
*** *
14898144 TCTTCCTTCTTCTTCTCTTCCTCTTTCTTGGGTTCTTCCTTTTTTGGT
1 TCTTCCTTCTTAGGCTCTTCCTCTTTCTTGGGTTCTTCCTTCTTTGGT
* ** *
14898192 TCTTCCTTCTTAGGCTCTT-CTTTCTTC-TGCTCTTCTTCCTTCTTGGGT
1 TCTTCCTTCTTAGGCTCTTCCTCT-TTCTTG-GGTTCTTCCTTCTTTGGT
* * *
14898240 TCTTCTTTCTTTGGCTCCTCCTCTTTCTTGGGTTCTTCCTTCTTTGG
1 TCTTCCTTCTTAGGCTCTTCCTCTTTCTTGGGTTCTTCCTTCTTTGG
14898287 CTCCTTCTTC
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
47 5 0.07
48 66 0.87
49 5 0.07
ACGTcount: A:0.01, C:0.30, G:0.13, T:0.57
Consensus pattern (48 bp):
TCTTCCTTCTTAGGCTCTTCCTCTTTCTTGGGTTCTTCCTTCTTTGGT
Found at i:14898286 original size:33 final size:33
Alignment explanation
Indices: 14898144--14898291 Score: 135
Period size: 33 Copynumber: 4.6 Consensus size: 33
14898134 CTTTTTCTCC
* * *
14898144 TCTTCCTTCTTCT-TCTCTTCCTCTTTCTTGGGT
1 TCTTCCTTCTT-TGGCTCCTCCTCCTTCTTGGGT
* * * *
14898177 TCTTCCTTTTTTGG-T--TCTTCCTTCTTAGGC
1 TCTTCCTTCTTTGGCTCCTCCTCCTTCTTGGGT
* * *
14898207 TCTTCTTTCTTCT-GCTCTTCTTCCTTCTTGGGT
1 TCTTCCTTCTT-TGGCTCCTCCTCCTTCTTGGGT
* *
14898240 TCTTCTTTCTTTGGCTCCTCCTCTTTCTTGGGT
1 TCTTCCTTCTTTGGCTCCTCCTCCTTCTTGGGT
14898273 TCTTCCTTCTTTGGCTCCT
1 TCTTCCTTCTTTGGCTCCT
14898292 TCTTCTCTGG
Statistics
Matches: 95, Mismatches: 14, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
30 21 0.22
31 2 0.02
32 3 0.03
33 69 0.73
ACGTcount: A:0.01, C:0.31, G:0.12, T:0.56
Consensus pattern (33 bp):
TCTTCCTTCTTTGGCTCCTCCTCCTTCTTGGGT
Found at i:14898303 original size:48 final size:46
Alignment explanation
Indices: 14898147--14898304 Score: 137
Period size: 48 Copynumber: 3.3 Consensus size: 46
14898137 TTTCTCCTCT
* *
14898147 TCCTTCTTCTT--CTCTTCCTCTTTCTTGGGTTCTTCCTTTTTTGG
1 TCCTTCTTCTTGGCTCCTCCTCTTTCTTGGGTTCTTCCTTCTTTGG
* ** *
14898191 TTCTTCCTTCTTAGGCT-CT--TCTTTCTTCTGCTCTTCTTCCTTCTTGGG
1 TCCTT-CTTCTT-GGCTCCTCCTCTTTC-T-TG-GGTTCTTCCTTCTTTGG
*
14898239 TTCTTCTTTCTTTGGCTCCTCCTCTTTCTTGGGTTCTTCCTTCTTTGG
1 TCCTTC-TTC-TTGGCTCCTCCTCTTTCTTGGGTTCTTCCTTCTTTGG
14898287 CTCCTTCTTCTCTGGCTC
1 -TCCTTCTTCT-TGGCTC
14898305 TTTTGCTGGC
Statistics
Matches: 90, Mismatches: 10, Indels: 24
0.73 0.08 0.19
Matches are distributed among these distances:
44 4 0.04
45 12 0.13
46 1 0.01
47 5 0.06
48 50 0.56
49 11 0.12
50 1 0.01
51 6 0.07
ACGTcount: A:0.01, C:0.32, G:0.13, T:0.55
Consensus pattern (46 bp):
TCCTTCTTCTTGGCTCCTCCTCTTTCTTGGGTTCTTCCTTCTTTGG
Found at i:14900299 original size:28 final size:28
Alignment explanation
Indices: 14900268--14900328 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
14900258 TTATAAAATC
*
14900268 AAATAATAAATATGTAATTATA-TAATAA
1 AAATAATAAATATATAATTATATTAA-AA
* * *
14900296 AAATATTATATATATCATTATATTAAAA
1 AAATAATAAATATATAATTATATTAAAA
14900324 AAATA
1 AAATA
14900329 TTTGAAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 25 0.89
29 3 0.11
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (28 bp):
AAATAATAAATATATAATTATATTAAAA
Found at i:14900487 original size:18 final size:18
Alignment explanation
Indices: 14900456--14900490 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14900446 TACTATTATA
14900456 AAATAAAATAATTATTTC
1 AAATAAAATAATTATTTC
* *
14900474 AAATATAATTATTATTT
1 AAATAAAATAATTATTT
14900491 TTATATGTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATAAAATAATTATTTC
Found at i:14900832 original size:13 final size:13
Alignment explanation
Indices: 14900814--14900841 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14900804 ACAGTATATT
14900814 TATTAATTAAAAA
1 TATTAATTAAAAA
14900827 TATTAATTAAAAA
1 TATTAATTAAAAA
14900840 TA
1 TA
14900842 GAAAAAAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TATTAATTAAAAA
Found at i:14903280 original size:21 final size:21
Alignment explanation
Indices: 14903256--14903295 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14903246 GGATTAATTT
14903256 GATTAGATATTATA-ATTATTG
1 GATTAGATATT-TACATTATTG
*
14903277 GATTATATATTTACATTAT
1 GATTAGATATTTACATTAT
14903296 ATTGTATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.50
Consensus pattern (21 bp):
GATTAGATATTTACATTATTG
Found at i:14903994 original size:20 final size:21
Alignment explanation
Indices: 14903962--14904000 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
14903952 GATAATTATT
14903962 TTTATTTTATTTAAATTAAGA
1 TTTATTTTATTTAAATTAAGA
*
14903983 TTTATTTT-TTTAATTTAA
1 TTTATTTTATTTAAATTAA
14904001 TGTATTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (21 bp):
TTTATTTTATTTAAATTAAGA
Found at i:14924393 original size:15 final size:15
Alignment explanation
Indices: 14924343--14924400 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
14924333 TGGGTTAGGT
*
14924343 AATTAAAATAATTAGG
1 AATTAAAATAATTA-A
* *
14924359 AATT-AATTAAATAA
1 AATTAAAATAATTAA
14924373 ATATTAAAATAATTAA
1 A-ATTAAAATAATTAA
14924389 AATTAAAA-AATT
1 AATTAAAATAATT
14924401 TAGGTTAAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 5 0.14
15 17 0.49
16 13 0.37
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (15 bp):
AATTAAAATAATTAA
Found at i:14926152 original size:24 final size:24
Alignment explanation
Indices: 14926125--14926175 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
14926115 TCGTAGGTCG
* *
14926125 AATAAATTATGCTAATAAATGTTA
1 AATAAATTATACTAATAAATATTA
*
14926149 AATATATTATACTAATAAATATTA
1 AATAAATTATACTAATAAATATTA
14926173 AAT
1 AAT
14926176 CGTCTAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (24 bp):
AATAAATTATACTAATAAATATTA
Found at i:14927785 original size:24 final size:23
Alignment explanation
Indices: 14927741--14927786 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
14927731 ATAAAAATTA
*
14927741 AACCCTAAAACCCAAAAACAAAT
1 AACCCTAAAACACAAAAACAAAT
* *
14927764 AACCCTTAAAACATAAACACAAA
1 AACCC-TAAAACACAAAAACAAA
14927787 ATTCTCCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.61, C:0.28, G:0.00, T:0.11
Consensus pattern (23 bp):
AACCCTAAAACACAAAAACAAAT
Found at i:14934118 original size:55 final size:56
Alignment explanation
Indices: 14934058--14934170 Score: 210
Period size: 55 Copynumber: 2.0 Consensus size: 56
14934048 GATTTTTAGT
14934058 TTTTTTGGGCATTCTAAGACGTATATATGACAAAAATAAGAACAT-GAGTTAGCCG
1 TTTTTTGGGCATTCTAAGACGTATATATGACAAAAATAAGAACATGGAGTTAGCCG
14934113 TTTTTTGGGCATTCTAAGACGTATATATGACAAAAATAAGAACATGGGAGTTAGCCG
1 TTTTTTGGGCATTCTAAGACGTATATATGACAAAAATAAGAACAT-GGAGTTAGCCG
14934170 T
1 T
14934171 CAAAATATCG
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
55 45 0.80
57 11 0.20
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.31
Consensus pattern (56 bp):
TTTTTTGGGCATTCTAAGACGTATATATGACAAAAATAAGAACATGGAGTTAGCCG
Found at i:14934481 original size:15 final size:15
Alignment explanation
Indices: 14934431--14934488 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
14934421 TGGGTTAGGT
*
14934431 AATTAAAATAATTAGG
1 AATTAAAATAATTA-A
* *
14934447 AATT-AATTAAATAA
1 AATTAAAATAATTAA
14934461 ATATTAAAATAATTAA
1 A-ATTAAAATAATTAA
14934477 AATTAAAA-AATT
1 AATTAAAATAATT
14934489 TAGGTTAAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 5 0.14
15 17 0.49
16 13 0.37
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (15 bp):
AATTAAAATAATTAA
Found at i:14936240 original size:24 final size:24
Alignment explanation
Indices: 14936213--14936263 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
14936203 TCGTAGGTCG
* *
14936213 AATAAATTATGCTAATAAATGTTA
1 AATAAATTATACTAATAAATATTA
*
14936237 AATATATTATACTAATAAATATTA
1 AATAAATTATACTAATAAATATTA
14936261 AAT
1 AAT
14936264 CGTCTAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (24 bp):
AATAAATTATACTAATAAATATTA
Found at i:14937873 original size:24 final size:23
Alignment explanation
Indices: 14937829--14937874 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
14937819 ATAAAAATTA
*
14937829 AACCCTAAAACCCAAAAACAAAT
1 AACCCTAAAACACAAAAACAAAT
* *
14937852 AACCCTTAAAACATAAACACAAA
1 AACCC-TAAAACACAAAAACAAA
14937875 ATTCTCCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.61, C:0.28, G:0.00, T:0.11
Consensus pattern (23 bp):
AACCCTAAAACACAAAAACAAAT
Found at i:14943599 original size:17 final size:17
Alignment explanation
Indices: 14943545--14943599 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
14943535 TGGCAGACCA
*
14943545 TGTGAGCCACACGGCCG
1 TGTGAGCCACACGGGCG
* ** * *
14943562 TGTGAACCATTCAGGCT
1 TGTGAGCCACACGGGCG
14943579 TGTGAGCCACACGGGCG
1 TGTGAGCCACACGGGCG
14943596 TGTG
1 TGTG
14943600 TTAGACAATG
Statistics
Matches: 27, Mismatches: 11, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.18, C:0.27, G:0.35, T:0.20
Consensus pattern (17 bp):
TGTGAGCCACACGGGCG
Found at i:14947301 original size:28 final size:29
Alignment explanation
Indices: 14947269--14947323 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 29
14947259 TGGCACAATT
*
14947269 CCTACGGCTGCTAGCT-ATGGATATCCTC
1 CCTACGGCTGCTAGATCATGGATATCCTC
14947297 CCTACGGCTGCTAGATCATGGATATCC
1 CCTACGGCTGCTAGATCATGGATATCC
14947324 CTAGCTGCGC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.27
Consensus pattern (29 bp):
CCTACGGCTGCTAGATCATGGATATCCTC
Found at i:14950930 original size:10 final size:10
Alignment explanation
Indices: 14950878--14950926 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
14950868 AAAACTCAAA
14950878 ATATATATTT
1 ATATATATTT
14950888 ATATATATTT
1 ATATATATTT
14950898 ATATTAATATTT
1 ATA-T-ATATTT
14950910 A-ATA-ATTT
1 ATATATATTT
14950918 -TATATATTT
1 ATATATATTT
14950927 TTATTTATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
8 7 0.20
9 5 0.14
10 14 0.40
11 2 0.06
12 7 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
ATATATATTT
Found at i:14964550 original size:17 final size:18
Alignment explanation
Indices: 14964503--14964551 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
14964493 AATTTAAAAT
*
14964503 TATGGGCCCACATGCCCG
1 TATGGGCCCACACGCCCG
*
14964521 TATGGGCCTACACGCCCG
1 TATGGGCCCACACGCCCG
14964539 -A-GTGGCCCACACG
1 TATG-GGCCCACACG
14964552 TCTGGATTGC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 1 0.04
17 10 0.37
18 16 0.59
ACGTcount: A:0.18, C:0.39, G:0.29, T:0.14
Consensus pattern (18 bp):
TATGGGCCCACACGCCCG
Found at i:14965646 original size:31 final size:31
Alignment explanation
Indices: 14965611--14965674 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
14965601 TCAAACACAC
14965611 ACCCAAAACATTTAGCCATTGAAACAAATAT
1 ACCCAAAACATTTAGCCATTGAAACAAATAT
14965642 ACCCAAAACATTTAGCCATTGAAACAAATAT
1 ACCCAAAACATTTAGCCATTGAAACAAATAT
14965673 AC
1 AC
14965675 ATTTGTGTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.48, C:0.23, G:0.06, T:0.22
Consensus pattern (31 bp):
ACCCAAAACATTTAGCCATTGAAACAAATAT
Found at i:14966549 original size:16 final size:16
Alignment explanation
Indices: 14966521--14966564 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
14966511 ATTTAAAAAC
*
14966521 ATCTAAAATTTCAATT
1 ATCTAAAAATTCAATT
*
14966537 ATTTAAAAATTCAATT
1 ATCTAAAAATTCAATT
14966553 ATCTAAAAATTC
1 ATCTAAAAATTC
14966565 TTAATATTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (16 bp):
ATCTAAAAATTCAATT
Found at i:14978037 original size:10 final size:10
Alignment explanation
Indices: 14978022--14978046 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14978012 CTCCGGATAT
14978022 CACCATCAAG
1 CACCATCAAG
14978032 CACCATCAAG
1 CACCATCAAG
14978042 CACCA
1 CACCA
14978047 GTCCAACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.44, G:0.08, T:0.08
Consensus pattern (10 bp):
CACCATCAAG
Found at i:14980994 original size:15 final size:15
Alignment explanation
Indices: 14980954--14980995 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14980944 TAATTTCACA
*
14980954 TTTCACTATTATGTC
1 TTTCACTATTTTGTC
14980969 TTTCACT-TTTTGTTC
1 TTTCACTATTTTG-TC
14980984 TTTCA-TATTTTG
1 TTTCACTATTTTG
14980996 CATGCATAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.14, C:0.17, G:0.07, T:0.62
Consensus pattern (15 bp):
TTTCACTATTTTGTC
Found at i:14982785 original size:22 final size:22
Alignment explanation
Indices: 14982760--14982818 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
14982750 CATCATTGGA
*
14982760 AATTTAATAAATTATTAAGGAT
1 AATTTAAGAAATTATTAAGGAT
**
14982782 AATTTTGGAAATTATTAAGGAT
1 AATTTAAGAAATTATTAAGGAT
**
14982804 AATTTTGGAAATTAT
1 AATTTAAGAAATTAT
14982819 CAATTAAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (22 bp):
AATTTAAGAAATTATTAAGGAT
Found at i:14983805 original size:25 final size:25
Alignment explanation
Indices: 14983749--14983820 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 25
14983739 ACTCAACTCT
* * *
14983749 CATGAGCTTCTC-GTATACAGCTCA
1 CATGAGCTTCCCATTATTCAGCTCA
* * *
14983773 CATGAGCTTCCCGTTATTTAGCTCG
1 CATGAGCTTCCCATTATTCAGCTCA
*
14983798 CATTAGCTTCCCATTATTCAGCT
1 CATGAGCTTCCCATTATTCAGCT
14983821 TGGAAGAGCT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 11 0.28
25 28 0.72
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (25 bp):
CATGAGCTTCCCATTATTCAGCTCA
Found at i:14991223 original size:25 final size:25
Alignment explanation
Indices: 14991186--14991254 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
14991176 CGGACACTCC
** *
14991186 ACAGCTCTTATGAGCTTGCTGATACT
1 ACAGCTCACATGAGCTTCCTGATA-T
* *
14991212 -CAGCTCGCATGAGCTTCCTGTTAT
1 ACAGCTCACATGAGCTTCCTGATAT
14991236 ACAGCTCACATGAGCTTCC
1 ACAGCTCACATGAGCTTCC
14991255 CGTTATTCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (25 bp):
ACAGCTCACATGAGCTTCCTGATAT
Found at i:14991259 original size:25 final size:25
Alignment explanation
Indices: 14991212--14991266 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
14991202 TGCTGATACT
* *
14991212 CAGCTCGCATGAGCTTCCTGTTATA
1 CAGCTCACATGAGCTTCCCGTTATA
*
14991237 CAGCTCACATGAGCTTCCCGTTATT
1 CAGCTCACATGAGCTTCCCGTTATA
14991262 CAGCT
1 CAGCT
14991267 TGGAATAGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.20, C:0.31, G:0.18, T:0.31
Consensus pattern (25 bp):
CAGCTCACATGAGCTTCCCGTTATA
Found at i:14992963 original size:20 final size:20
Alignment explanation
Indices: 14992913--14992972 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
14992903 TTTAATTTAA
* *
14992913 TGATTATCTTAATAGT-ATT
1 TGATTATCTTAATACTAAAT
*
14992932 TTATTAAT-TTAATACTAAAT
1 TGATT-ATCTTAATACTAAAT
*
14992952 TGATTATCTTAATATTAAAT
1 TGATTATCTTAATACTAAAT
14992972 T
1 T
14992973 TAATTTAATG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
19 13 0.39
20 20 0.61
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (20 bp):
TGATTATCTTAATACTAAAT
Found at i:14996041 original size:19 final size:19
Alignment explanation
Indices: 14996017--14996054 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14996007 TATTTATTCT
14996017 TTTTTCTACTTCTTCTTCC
1 TTTTTCTACTTCTTCTTCC
*
14996036 TTTTTCTACTTTTTCTTCC
1 TTTTTCTACTTCTTCTTCC
14996055 AAGTGCAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.05, C:0.29, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTTCTACTTCTTCTTCC
Found at i:14996492 original size:16 final size:16
Alignment explanation
Indices: 14996471--14996505 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14996461 CTTAAAACAT
*
14996471 GTTTTTAATTATGTTA
1 GTTTTTAATTAAGTTA
*
14996487 GTTTTTAGTTAAGTTA
1 GTTTTTAATTAAGTTA
14996503 GTT
1 GTT
14996506 GGTAGTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (16 bp):
GTTTTTAATTAAGTTA
Found at i:15004372 original size:19 final size:19
Alignment explanation
Indices: 15004348--15004387 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
15004338 ATTAATTTTG
15004348 ATCAAATCAAATT-AAATTA
1 ATCAAAT-AAATTAAAATTA
*
15004367 ATCAAATTAATTAAAATTA
1 ATCAAATAAATTAAAATTA
15004386 AT
1 AT
15004388 ATGATATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (19 bp):
ATCAAATAAATTAAAATTA
Found at i:15006719 original size:21 final size:20
Alignment explanation
Indices: 15006671--15006720 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 20
15006661 ACAAAAATGA
15006671 TATCATTTGCTTCGAACAAAT
1 TATCATTTGCTTC-AACAAAT
15006692 TGA-CATTTGGCTT-AACAAGAT
1 T-ATCATTT-GCTTCAACAA-AT
15006713 TATCATTT
1 TATCATTT
15006721 CTCCATTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
20 6 0.24
21 14 0.56
22 5 0.20
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (20 bp):
TATCATTTGCTTCAACAAAT
Found at i:15007406 original size:12 final size:10
Alignment explanation
Indices: 15007389--15007419 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
15007379 TCTTTGATTC
15007389 TTTCTCTCAT
1 TTTCTCTCAT
15007399 TTTCTCTCAT
1 TTTCTCTCAT
15007409 TTTCTCTCAT
1 TTTCTCTCAT
15007419 T
1 T
15007420 CTCTTATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.10, C:0.29, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTCTCTCAT
Found at i:15024775 original size:17 final size:17
Alignment explanation
Indices: 15024753--15024804 Score: 68
Period size: 19 Copynumber: 2.9 Consensus size: 17
15024743 ATGGAAACAT
*
15024753 AATCTTTGAAGATATGC
1 AATCTTAGAAGATATGC
*
15024770 AATCTTAGATATGATATGT
1 AATCTTAGA-A-GATATGC
15024789 AATCTTAGAAGATATG
1 AATCTTAGAAGATATG
15024805 ATTTTGTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 14 0.45
18 2 0.06
19 15 0.48
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (17 bp):
AATCTTAGAAGATATGC
Found at i:15024804 original size:22 final size:23
Alignment explanation
Indices: 15024776--15024820 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
15024766 ATGCAATCTT
15024776 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
15024798 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
15024821 GATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:15024830 original size:22 final size:23
Alignment explanation
Indices: 15024786--15024830 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
15024776 AGATATGATA
*
15024786 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
15024809 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
15024831 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:15025031 original size:19 final size:21
Alignment explanation
Indices: 15025007--15025045 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
15024997 CTGTTTTCTT
*
15025007 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
15025026 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
15025046 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:15031295 original size:9 final size:9
Alignment explanation
Indices: 15031283--15031324 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
15031273 ATCAAAATAT
15031283 AAAAAAAAG
1 AAAAAAAAG
15031292 AAAAAAAAG
1 AAAAAAAAG
15031301 AAGAAAAAATG
1 AA-AAAAAA-G
*
15031312 -ATAAAAAG
1 AAAAAAAAG
15031320 AAAAA
1 AAAAA
15031325 GAAAAGGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
8 1 0.04
9 19 0.68
10 7 0.25
11 1 0.04
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.05
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:15032981 original size:44 final size:44
Alignment explanation
Indices: 15032916--15033587 Score: 231
Period size: 44 Copynumber: 15.5 Consensus size: 44
15032906 GAAGATGGCA
* *
15032916 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGAC
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAC
* * **
15032960 AATCCTATCTCTTTGAAGTTGCAGTGGAGCAGATTAAAATC-AC
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAC
* * * *
15033003 AGATCTTATTTCTCTGAACTTGCAG-AGAGCAGA-T--CG-C-ATC
1 A-ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGA-C
* * **
15033043 AAGTCTTATC-CTCTTGAAGTTGCAGT-GAGGCAGACTGAAGATGAC
1 AA-TCTTATCTCTC-TGAAGTTGCAGTGGA-GCAGATTAAAGCCGAC
* * * * *
15033088 AAATCTTATCTCCCTAAAGTTGCAATGGAGCAGGTTAAAGCCGAT
1 -AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAC
* * * ***
15033133 AATCCTATCT-TCCTGAAGTTGCAGTGGAG-TGCATTAAAACCTTG
1 AATCTTATCTCT-CTGAAGTTGCAGTGGAGCAG-ATTAAAGCCGAC
* * * * *
15033177 GATCTTATCCCTTTGAAGTTGCAG-AGAGCAGA-T--CG-C-ATC
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGA-C
* * ** *
15033216 AAGTCTTATC-CTCTTGAAGTTGCAGT-GAGGCAGACTGAAGATGGAA
1 AA-TCTTATCTCTC-TGAAGTTGCAGTGGA-GCAGATTAAAG-CCGAC
* * *
15033262 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGAT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAC
* * ** * *
15033306 AATCCTATCT-TCCTAAAGTTGCAGTGGAGTGGATTAAAACCTTA-
1 AATCTTATCTCT-CTGAAGTTGCAGTGGAGCAGATTAAAGCC-GAC
* * *
15033350 GATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CG-C-ATC
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGA-C
* * * * * **
15033389 TAGTCTTATCTCCCTAAAGTTGCAGTGGAGTAGACT-AAG-TAATC
1 -AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGA-C
* ** * **
15033433 AAGTTTTATC-CTCTTGAAGTTGCAGT-GAGGCAGGCTGAAGATGAC
1 AA-TCTTATCTCTC-TGAAGTTGCAGTGGA-GCAGATTAAAGCCGAC
* * * * ***
15033478 GAATCTTATCTCCCTGAAGTTGCAGTGGGGCATACTAAA-TAAAC
1 -AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAC
* * * * * * *
15033522 AAATCCTGTCTCCCTGAAGTTGCAGTAGAGCGGATTAAA-ACTAC
1 -AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAC
15033566 AGATCTTATCTCTCTGAAGTTG
1 A-ATCTTATCTCTCTGAAGTTG
15033588 AAGTTGAGTA
Statistics
Matches: 466, Mismatches: 112, Indels: 100
0.69 0.17 0.15
Matches are distributed among these distances:
37 1 0.00
39 11 0.02
40 60 0.13
41 16 0.03
42 6 0.01
43 27 0.06
44 237 0.51
45 87 0.19
46 20 0.04
47 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAC
Found at i:15033084 original size:173 final size:172
Alignment explanation
Indices: 15032869--15033415 Score: 801
Period size: 173 Copynumber: 3.2 Consensus size: 172
15032859 ACTAAGTAAG
* * * *
15032869 CAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAAATTGAAGATGGCAAATCTTATCTCCCTGAGG
1 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
* * *
15032934 TTGCAGTGGAGCAGATTAAAGCCGACAATCCTATC-TCTTTGAAGTTGCAGTGGAGCAGATTAAA
66 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTC-CTGAAGTTGCAGTGGAG-AGATTAAA
* ** * *
15032998 ATCACAGATCTTATTTCTCTGAACTTGCAGAGAGCAGATCGCAT
129 ACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
* * *
15033042 CAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTAAAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
* *
15033107 TTGCAATGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGCATTAAAA
66 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGAG-ATTAAAA
* * *
15033172 CCTTGGATCTTATCCCTTTGAAGTTGCAGAGAGCAGATCGCAT
130 CCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
* *
15033215 CAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
* *
15033280 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTAAAGTTGCAGTGGAGTGGATTAAAA
66 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAG-AGATTAAAA
15033345 CCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
130 CCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
* *
15033388 CTAGTCTTAT-CTCCCTAAAGTTGCAGTG
1 CAAGTCTTATCCT-CCTGAAGTTGCAGTG
15033416 GAGTAGACTA
Statistics
Matches: 338, Mismatches: 32, Indels: 8
0.89 0.08 0.02
Matches are distributed among these distances:
172 3 0.01
173 332 0.98
174 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (172 bp):
CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGAGATTAAAAC
CTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
Found at i:15033326 original size:217 final size:217
Alignment explanation
Indices: 15033089--15033724 Score: 501
Period size: 217 Copynumber: 2.9 Consensus size: 217
15033079 GAAGATGACA
* *
15033089 AATCTTATCTCCCTAAAGTTGCAATGGAGCAGG-TTAAAGCCGATA-ATCCTATCT-TCCTGAAG
1 AATCCTATCTCCCTAAAGTTGCAATGGAG-AGGATTAAAACC-ATAGATCCTATCTCT-CTGAAG
* * * * * * *
15033151 TTGCAGTGGAGTGCATTAAAACCT-TGGATCTTATC-CCTTTGAAGTTGCAG-AGAGCAGA-T-C
63 TTGCA---GAGAGCA-GAAAACATCTAG-TCTTATCTCC-CTAAAGTTGCAGTAGAGCAGACTAA
*
15033211 G-CATCAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATGGA-AAATCTTATCTCC
122 GTAATCAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGAT-GACAAATCTTATCTCC
15033274 CTGAAGTTGCAGTGGAGCAGGTTAAAGCCGAT
186 CTGAAGTTGCAGTGGAGCAGGTTAAAGCCGAT
* * * * *
15033306 AATCCTATCTTCCTAAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTAAAGTTGCAATGGAGAGGATTAAAACCATAGATCCTATCTCTCTGAAGTTG
*** * *
15033371 CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTAAAGTTGCAGTGGAGTAGACTAAGTAATCAAG
66 CAGAGAGCAGAAAACATCTAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGACTAAGTAATCAAG
* * *
15033436 TTTTATCCTCTTGAAGTTGCAGTGAGGCAGGCTGAAGATGACGAATCTTATCTCCCTGAAGTTGC
131 TCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAGTTGC
* ** * **
15033501 AGTGGGGCATACTAAATAAAC-A-
196 AGTGGAGCA-GGTTAA-AGCCGAT
* * * * * * * *
15033523 AATCCTGTCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACTACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTAAAGTTGCAATGGAGAGGATTAAAACCATAGATCCTATCTCTCTGAAGTTG
* * * ** * * * * * * *
15033588 AAGTTGAGTAGATCACATCGAGTCTTATCTCCCTGAAGTTGTAGTGGCGCAGACTCAAGAAAGCA
66 CAG-AGAGCAGAAAACATCTAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGACT-AAGTAATCA
* * * * * * * * *
15033653 AGCCTTATCCCCCTGAAATTGCAGTGGGGCATACT-AA-ATAAACAAATCCTGTCTCCCT-AAGT
129 AGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGAT-GACAAATCTTATCTCCCTGAAGT
*
15033715 TGTAGTGGAG
193 TGCAGTGGAG
15033725 TGGATTAGAG
Statistics
Matches: 342, Mismatches: 62, Indels: 30
0.79 0.14 0.07
Matches are distributed among these distances:
213 20 0.06
214 16 0.05
215 1 0.00
216 7 0.02
217 198 0.58
218 64 0.19
219 36 0.11
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (217 bp):
AATCCTATCTCCCTAAAGTTGCAATGGAGAGGATTAAAACCATAGATCCTATCTCTCTGAAGTTG
CAGAGAGCAGAAAACATCTAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGACTAAGTAATCAAG
TCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAGTTGC
AGTGGAGCAGGTTAAAGCCGAT
Found at i:15033419 original size:84 final size:84
Alignment explanation
Indices: 15033138--15033419 Score: 237
Period size: 84 Copynumber: 3.3 Consensus size: 84
15033128 CCGATAATCC
* * * * * *
15033138 TATCTTCCTGAAGTTGCAGTGGAGTGCATTAAAACCTTGGATCTTATCCCTTTGAAGTTGCAGAG
1 TATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAG
*
15033203 AGCAGATCGCATCAAGTCT
66 AGCAGATCGCATCTAGTCT
* * * * **** * *
15033222 TATC-CTCTTGAAGTTGCAGT-GAG-GCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTTGC
1 TATCTC-CCTAAAGTTGCAGTGGAGTG--GA-TTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
* ** *** * *
15033284 AGTGGAGCAGGTTAAAGCCGATAATCC
62 AG-AGAGCA-G--ATCGCATCTAGTCT
*
15033311 TATCTTCCTAAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAG
1 TATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAG
15033376 AGCAGATCGCATCTAGTCT
66 AGCAGATCGCATCTAGTCT
15033395 TATCTCCCTAAAGTTGCAGTGGAGT
1 TATCTCCCTAAAGTTGCAGTGGAGT
15033420 AGACTAAGTA
Statistics
Matches: 144, Mismatches: 43, Indels: 22
0.69 0.21 0.11
Matches are distributed among these distances:
82 1 0.01
83 3 0.02
84 49 0.34
85 24 0.17
86 6 0.04
87 6 0.04
88 27 0.19
89 24 0.17
90 3 0.02
91 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (84 bp):
TATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAG
AGCAGATCGCATCTAGTCT
Found at i:15033496 original size:346 final size:346
Alignment explanation
Indices: 15032869--15033505 Score: 856
Period size: 346 Copynumber: 1.8 Consensus size: 346
15032859 ACTAAGTAAG
* * *
15032869 CAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAAATTGAAGATGGCAAATCTTATCTCCCTGAGG
1 CAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAAACTGAAGATGGAAAATCTTATCTCCCTGAAG
* *
15032934 TTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTCTTTGAAGTTGCAGTGGAGCAGATTAAAA
66 TTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAA
* * * *
15032999 TCACAGATCTTATTTCTCTGAACTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTCTTGAAGTT
131 CCACAGATCTTATCTCTCTGAACTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTCCTAAAGTT
* * *
15033064 GCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGGTTAAAGC
196 GCAGTGAGGCAGACTGAAGATAACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGGCTAAAGA
* *
15033129 CGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGCATTAAAACCTTGGATCTTATCCCTTTGAA
261 CGAGAATCCTATCTCCCTGAAGTTGCAGTGGAGTGCATTAAAACCTTGGATCTTATCCCTTTGAA
15033194 GTTGCAGAGAGCAGATCGCAT
326 GTTGCAGAGAGCAGATCGCAT
* * *
15033215 CAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAAACTGAAGATGGAAAATCTTATCTCCCTGAAG
* * **
15033280 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCT-TCCTAAAGTTGCAGTGGAGTGGATTAAA
66 TTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTCT-CTAAAGTTGCAGTGGAGCAGATTAAA
** * *
15033344 ACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTAT-CTCCCTAAAG
130 ACCACAGATCTTATCTCTCTGAACTTGCAGAGAGCAGATCGCATCAAGTCTTATCCT-CCTAAAG
* * * * * *
15033408 TTGCAGTG-GAGTAGACT-AAG-TAATCAAGTTTTATC-CTCTTGAAGTTGCAGT-GAGGCAGGC
194 TTGCAGTGAG-GCAGACTGAAGATAA-CAAATCTTATCTC-CCTAAAGTTGCAATGGA-GCAGGC
* * *
15033468 TGAAGATGACGAATCTTATCTCCCTGAAGTTGCAGTGG
255 TAAAGACGA-GAATCCTATCTCCCTGAAGTTGCAGTGG
15033506 GGCATACTAA
Statistics
Matches: 250, Mismatches: 34, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
344 5 0.02
345 38 0.15
346 207 0.83
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (346 bp):
CAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAAACTGAAGATGGAAAATCTTATCTCCCTGAAG
TTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAA
CCACAGATCTTATCTCTCTGAACTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTCCTAAAGTT
GCAGTGAGGCAGACTGAAGATAACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGGCTAAAGA
CGAGAATCCTATCTCCCTGAAGTTGCAGTGGAGTGCATTAAAACCTTGGATCTTATCCCTTTGAA
GTTGCAGAGAGCAGATCGCAT
Found at i:15033500 original size:173 final size:172
Alignment explanation
Indices: 15032869--15033505 Score: 768
Period size: 173 Copynumber: 3.7 Consensus size: 172
15032859 ACTAAGTAAG
* * * * ** *
15032869 CAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAAATTGAAGATGGCAAATCTTATCTCCCTGAGG
1 CAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATAAC-AATCTTATCTCCCTGAAG
* * * **
15032934 TTGCAGTGGAGCAGATTAAAGCCGACAATCCTATC-TCTTTGAAGTTGCAGTGGAGCAGATTAAA
65 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTC-CTGAAGTTGCAGTGGAGTGGATTAAA
* ** * *
15032998 ATCACAGATCTTATTTCTCTGAACTTGCAGAGAGCAGATCGCAT
129 ACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
* *
15033042 CAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTAAAG
1 CAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATAAC-AATCTTATCTCCCTGAAG
* *
15033107 TTGCAATGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGCATTAAAA
65 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
* * *
15033172 CCTTGGATCTTATCCCTTTGAAGTTGCAGAGAGCAGATCGCAT
130 CCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
15033215 CAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATGGAA-AATCTTATCTCCCTGAA
1 CAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGAT--AACAATCTTATCTCCCTGAA
*
15033279 GTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTAAAGTTGCAGTGGAGTGGATTAAA
64 GTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAA
15033344 ACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
129 ACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
* * * * * *
15033388 CTAGTCTTAT-CTCCCTAAAGTTGCAGTG-GAGTAGACT-AAG-TAATCAAGTTTTATC-CTCTT
1 CAAGTCTTATCCT-CTTGAAGTTGCAGTGAG-GCAGACTGAAGATAA-CAA-TCTTATCTC-CCT
* * ** * * *
15033448 GAAGTTGCAGT-GAGGCAGGCTGAAGATGACGAATCTTATCTCCCTGAAGTTGCAGTGG
61 GAAGTTGCAGTGGA-GCAGGTTAAAGCCGA-TAATCCTATCTTCCTGAAGTTGCAGTGG
15033506 GGCATACTAA
Statistics
Matches: 409, Mismatches: 44, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
169 2 0.00
171 6 0.01
172 36 0.09
173 362 0.89
174 2 0.00
175 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (172 bp):
CAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATAACAATCTTATCTCCCTGAAGT
TGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAAC
CTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
Found at i:15034130 original size:22 final size:22
Alignment explanation
Indices: 15034070--15034127 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
15034060 AATCTTCAAG
15034070 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
15034089 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
15034111 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
15034128 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:15034263 original size:8 final size:7
Alignment explanation
Indices: 15034235--15034261 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
15034225 TTCATTGTAA
15034235 AAAAAAG
1 AAAAAAG
15034242 AAAAAAG
1 AAAAAAG
15034249 AAAAAAG
1 AAAAAAG
15034256 AAAAAA
1 AAAAAA
15034262 AGGGAATCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:15037044 original size:16 final size:15
Alignment explanation
Indices: 15037016--15037056 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
15037006 TTTAATCCTT
15037016 TAAAAATTATAAAAA
1 TAAAAATTATAAAAA
*
15037031 TAAAAATTATTAAAA
1 TAAAAATTATAAAAA
15037046 TGATAAAATTA
1 T-A-AAAATTA
15037057 CATTTTTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.65
16 1 0.04
17 7 0.30
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (15 bp):
TAAAAATTATAAAAA
Found at i:15042998 original size:53 final size:53
Alignment explanation
Indices: 15042886--15042991 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 53
15042876 CTTTCCAACC
* *
15042886 CTTTTTTAGATATTTAATGCCCCAAGACAATCTCCTCATTCAACATAAAATGA
1 CTTTTTTAGATATTTAATGCCCAAAGACAATCCCCTCATTCAACATAAAATGA
* *
15042939 CTTTTTTAGATATTTAATGCCTAAAGACAATCCCCTCATTCACCATAAAATGA
1 CTTTTTTAGATATTTAATGCCCAAAGACAATCCCCTCATTCAACATAAAATGA
15042992 TATTTTTCCC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (53 bp):
CTTTTTTAGATATTTAATGCCCAAAGACAATCCCCTCATTCAACATAAAATGA
Found at i:15049661 original size:36 final size:36
Alignment explanation
Indices: 15049610--15049686 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
15049600 GATATATATA
*
15049610 TGTTTCAGATGGATTAGCTCTTCGGAGCCAT-TGGTG
1 TGTTTCAGATGGATTAGCTCTTAGGAG-CATCTGGTG
* *
15049646 TGTTTCAGATTGATTAGCTCTTATGAGCATCTGGTG
1 TGTTTCAGATGGATTAGCTCTTAGGAGCATCTGGTG
15049682 TGTTT
1 TGTTT
15049687 TAGTTGGAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 3 0.08
36 34 0.92
ACGTcount: A:0.17, C:0.14, G:0.27, T:0.42
Consensus pattern (36 bp):
TGTTTCAGATGGATTAGCTCTTAGGAGCATCTGGTG
Found at i:15054314 original size:31 final size:31
Alignment explanation
Indices: 15054276--15054365 Score: 153
Period size: 32 Copynumber: 2.9 Consensus size: 31
15054266 AGGCAAATTA
15054276 CAAGAGTAATTGAATCCTAATAAAACTATTT
1 CAAGAGTAATTGAATCCTAATAAAACTATTT
*
15054307 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
1 CAAGAGTAATTGAATCCTAAT-AAAACTATTT
*
15054339 AAAGAGTAATTGAATCCTAATAAAACT
1 CAAGAGTAATTGAATCCTAATAAAACT
15054366 CTTTNNNNNN
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
31 27 0.48
32 29 0.52
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTATTT
Found at i:15054367 original size:31 final size:31
Alignment explanation
Indices: 15054277--15054369 Score: 159
Period size: 31 Copynumber: 3.0 Consensus size: 31
15054267 GGCAAATTAC
* *
15054277 AAGAGTAATTGAATCCTAATAAAACTATTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
15054308 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
15054340 AAGAGTAATTGAATCCTAATAAAACTCTTT
1 AAGAGTAATTGAATCCTAATAAAACTCTTT
15054370 NNNNNNNNNN
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 30 0.51
32 29 0.49
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:15061008 original size:32 final size:31
Alignment explanation
Indices: 15060964--15061023 Score: 111
Period size: 32 Copynumber: 1.9 Consensus size: 31
15060954 GGTAGGCAAC
15060964 TTTTTTTTTGCGCTTTTTGCTTTTTTTTCTT
1 TTTTTTTTTGCGCTTTTTGCTTTTTTTTCTT
15060995 TTTTTCTTTTGCGCTTTTTGCTTTTTTTT
1 TTTTT-TTTTGCGCTTTTTGCTTTTTTTT
15061024 TGCTGTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 5 0.18
32 23 0.82
ACGTcount: A:0.00, C:0.13, G:0.10, T:0.77
Consensus pattern (31 bp):
TTTTTTTTTGCGCTTTTTGCTTTTTTTTCTT
Found at i:15064130 original size:13 final size:13
Alignment explanation
Indices: 15064099--15064131 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
15064089 TGGACTGCTA
*
15064099 TTGGTTTTTTTAT
1 TTGGTTTTTATAT
15064112 TT-GTTTTTATAT
1 TTGGTTTTTATAT
15064124 TTGGTTTT
1 TTGGTTTT
15064132 ATTTTACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (13 bp):
TTGGTTTTTATAT
Found at i:15072331 original size:25 final size:25
Alignment explanation
Indices: 15072257--15072331 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
15072247 ATGAATTTTC
* *
15072257 TCAAAATTTTATTAGGGGTAAAATCG
1 TCAAAATTTTACTA-GGGTAAAATTG
* * *
15072283 TCAAATTTTTAACGA-GGTAAAATTT
1 TCAAAATTTT-ACTAGGGTAAAATTG
15072308 TCAAAATTTTACTAGGGTAAAATT
1 TCAAAATTTTACTAGGGTAAAATT
15072332 AGGGTGAGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
24 3 0.08
25 26 0.65
26 9 0.22
27 2 0.05
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.37
Consensus pattern (25 bp):
TCAAAATTTTACTAGGGTAAAATTG
Found at i:15075757 original size:25 final size:25
Alignment explanation
Indices: 15075683--15075757 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
15075673 ATGAATTTTC
* *
15075683 TCAAAATTTTATTAGGGGTAAAATCG
1 TCAAAATTTTACTA-GGGTAAAATTG
* * *
15075709 TCAAATTTTTAACGA-GGTAAAATTT
1 TCAAAATTTT-ACTAGGGTAAAATTG
15075734 TCAAAATTTTACTAGGGTAAAATT
1 TCAAAATTTTACTAGGGTAAAATT
15075758 AGGGTGAGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
24 3 0.08
25 26 0.65
26 9 0.22
27 2 0.05
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.37
Consensus pattern (25 bp):
TCAAAATTTTACTAGGGTAAAATTG
Found at i:15081748 original size:16 final size:17
Alignment explanation
Indices: 15081727--15081761 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
15081717 AAAAATATTA
*
15081727 AATTAATTAA-TTTCTC
1 AATTAAATAATTTTCTC
15081743 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
15081760 AA
1 AA
15081762 CCCAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:15083153 original size:46 final size:50
Alignment explanation
Indices: 15083100--15083199 Score: 145
Period size: 52 Copynumber: 2.0 Consensus size: 50
15083090 CATAAGTACT
15083100 AATAATCATTTAATGTTT-GCC-CA-TC-ACTTAAGTAGAGCTTCATAAG
1 AATAATCATTTAATGTTTGGCCACATTCAACTTAAGTAGAGCTTCATAAG
*
15083146 AATAATCATTTAATGTTTGGCCATCATTCTAACTTAAGTAGAGCTTCATGAG
1 AATAATCATTTAATGTTTGGCCA-CATTC-AACTTAAGTAGAGCTTCATAAG
15083198 AA
1 AA
15083200 GTTACTTAAC
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
46 18 0.38
47 3 0.06
49 2 0.04
50 2 0.04
52 22 0.47
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (50 bp):
AATAATCATTTAATGTTTGGCCACATTCAACTTAAGTAGAGCTTCATAAG
Found at i:15084930 original size:57 final size:57
Alignment explanation
Indices: 15084863--15084983 Score: 147
Period size: 57 Copynumber: 2.1 Consensus size: 57
15084853 GGTTTTCTCC
*
15084863 AAAATGAAAATAGAGAAACAGAAAAATTT-GAAAATGATTATGG-TTTCCTCCAAAATA
1 AAAATGAAAATAGAGAAACAGAAAAATTTGGAAAA-GAATATGGCTTT-CTCCAAAATA
* * * * * *
15084920 AAAATGAAAATGGAGCAATAGAATAATTTGGAAAAGAATGTGGCTTTCTCCAAAATG
1 AAAATGAAAATAGAGAAACAGAAAAATTTGGAAAAGAATATGGCTTTCTCCAAAATA
15084977 AAAATGA
1 AAAATGA
15084984 CTTAAAAAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
57 47 0.85
58 8 0.15
ACGTcount: A:0.50, C:0.08, G:0.17, T:0.24
Consensus pattern (57 bp):
AAAATGAAAATAGAGAAACAGAAAAATTTGGAAAAGAATATGGCTTTCTCCAAAATA
Found at i:15089561 original size:13 final size:13
Alignment explanation
Indices: 15089543--15089568 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15089533 ATAGCATGAT
15089543 TTGATATTGAATG
1 TTGATATTGAATG
15089556 TTGATATTGAATG
1 TTGATATTGAATG
15089569 GTTATTGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (13 bp):
TTGATATTGAATG
Found at i:15098312 original size:5 final size:5
Alignment explanation
Indices: 15098279--15098327 Score: 64
Period size: 5 Copynumber: 9.8 Consensus size: 5
15098269 GTGTTCTAAC
* *
15098279 TTTTG -TTTA TTTTA TTTTG TTTTG TTTTTG TTTTG TTTTG TTTTG TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG -TTTTG TTTTG TTTTG TTTTG TTTT
15098328 AGTGTGAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
4 3 0.08
5 32 0.80
6 5 0.12
ACGTcount: A:0.04, C:0.00, G:0.14, T:0.82
Consensus pattern (5 bp):
TTTTG
Found at i:15098317 original size:21 final size:21
Alignment explanation
Indices: 15098288--15098327 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
15098278 CTTTTGTTTA
15098288 TTTTATTTTGTTTTGTTTTTG
1 TTTTATTTTGTTTTGTTTTTG
*
15098309 TTTTGTTTTGTTTTGTTTT
1 TTTTATTTTGTTTTGTTTT
15098328 AGTGTGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.03, C:0.00, G:0.15, T:0.82
Consensus pattern (21 bp):
TTTTATTTTGTTTTGTTTTTG
Found at i:15100450 original size:22 final size:21
Alignment explanation
Indices: 15100417--15101020 Score: 539
Period size: 22 Copynumber: 28.0 Consensus size: 21
15100407 TAAAAACCCT
15100417 AACCCT-AACCCTTAACTTAA
1 AACCCTAAACCCTTAACTTAA
** *
15100437 AACCTCTATCCCCTTAACCTAAA
1 AACC-CTAAACCCTTAA-CTTAA
*
15100460 AACCCT-AACCATTAACTTTAA
1 AACCCTAAACCCTTAAC-TTAA
*
15100481 AACCCTAAACCCTTAACCTAAA
1 AACCCTAAACCCTTAA-CTTAA
15100503 AACCCT-AACCCTTAACTTTAA
1 AACCCTAAACCCTTAAC-TTAA
* * *
15100524 AACCTTAACCCCTTAACCTAA
1 AACCCTAAACCCTTAACTTAA
* * *
15100545 AAACCTTAATCCTTAACTTTAA
1 AACCCTAAACCCTTAAC-TTAA
*
15100567 AACCCTAAACCCTTAACCTAA
1 AACCCTAAACCCTTAACTTAA
* *
15100588 AGACCCTAAACTCTTAAATTAAA
1 A-ACCCTAAACCCTTAACTT-AA
* * *
15100611 AACACT-AACTCTTAAATTAAA
1 AACCCTAAACCCTTAACTT-AA
*
15100632 AACCCTAAACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTT-AA
* *
15100654 AACTCT-AACCCTTAACCTGAA
1 AACCCTAAACCCTTAA-CTTAA
15100675 AACCCT-AACCCTTAACTTTAA
1 AACCCTAAACCCTTAAC-TTAA
*
15100696 AACCCTAAACTCTTAACTTAAA
1 AACCCTAAACCCTTAACTT-AA
*
15100718 AACCCTAAACCATTAACTTAAA
1 AACCCTAAACCCTTAACTT-AA
*
15100740 AACCCT-AACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTT-AA
**
15100761 AACCCTAAACCCTTAACCAAAAA
1 AACCCTAAACCCTTAA-C-TTAA
* *
15100784 AACCCT-AACCATTAACCTAAA
1 AACCCTAAACCCTTAA-CTTAA
15100805 AACCCTAAA-CCTTAACTTTAA
1 AACCCTAAACCCTTAAC-TTAA
*
15100826 AACCCTAGACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTT-AA
15100848 AACCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTT-AA
* *
15100870 AACTCT-AACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTT-AA
* *
15100891 AACTCTAAACCCTTAACATAAA
1 AACCCTAAACCCTTAAC-TTAA
*
15100913 AACCCT-AACCCTTAACCTAAA
1 AACCCTAAACCCTTAA-CTTAA
15100934 AACCCTAAACCCTTAACTTTAA
1 AACCCTAAACCCTTAAC-TTAA
* * *
15100956 AACCCTAGATCTTTAACTTTAA
1 AACCCTAAACCCTTAAC-TTAA
*
15100978 AACCCTAAATCCTTAACTTAAA
1 AACCCTAAACCCTTAACTT-AA
*
15101000 AACCCT-AACCGTTAACTTAA
1 AACCCTAAACCCTTAACTTAA
15101020 A
1 A
15101021 TATAATTTGA
Statistics
Matches: 494, Mismatches: 61, Indels: 58
0.81 0.10 0.09
Matches are distributed among these distances:
20 11 0.02
21 207 0.42
22 255 0.52
23 21 0.04
ACGTcount: A:0.44, C:0.30, G:0.01, T:0.25
Consensus pattern (21 bp):
AACCCTAAACCCTTAACTTAA
Done.