Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35726063
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1821929 characters in sequence are not A, C, G, or T
File 75 of 109
Found at i:24297139 original size:46 final size:46
Alignment explanation
Indices: 24297083--24297177 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
24297073 TTGTCAATTA
*
24297083 ATTACAATTTAAATATGCTTAATAATTAATTCATTTGTTACCTTAC
1 ATTACAATTTAAATATACTTAATAATTAATTCATTTGTTACCTTAC
24297129 ATTACAATTTAAATATACTTAATAATTAATTCATTTGTTACCTTAC
1 ATTACAATTTAAATATACTTAATAATTAATTCATTTGTTACCTTAC
24297175 ATT
1 ATT
24297178 TTACAATGCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.38, C:0.13, G:0.03, T:0.46
Consensus pattern (46 bp):
ATTACAATTTAAATATACTTAATAATTAATTCATTTGTTACCTTAC
Found at i:24298365 original size:14 final size:14
Alignment explanation
Indices: 24298348--24298376 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
24298338 TGTGTTTCCA
24298348 ATAAACTCTTTCAC
1 ATAAACTCTTTCAC
24298362 ATAAACTCTTTCAC
1 ATAAACTCTTTCAC
24298376 A
1 A
24298377 ATAGACATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAAACTCTTTCAC
Found at i:24301572 original size:28 final size:28
Alignment explanation
Indices: 24301525--24301768 Score: 199
Period size: 28 Copynumber: 8.8 Consensus size: 28
24301515 GATGACCACA
* * * * *
24301525 AAGGTTTCTATTTCTTAGATCCGTCACG
1 AAGGCTTCCATTTCATAGATTCGTCATG
* **
24301553 AAGGCTTCCATTTCAAAGATTCACCATG
1 AAGGCTTCCATTTCATAGATTCGTCATG
* * * *
24301581 AAGGCTTTCATTTTATAGATTTGCCATG
1 AAGGCTTCCATTTCATAGATTCGTCATG
* * **
24301609 AAGGCTTCCATTTCATATATT-GGCACA
1 AAGGCTTCCATTTCATAGATTCGTCATG
* * * *
24301636 AAGCCTTCCATTTCTTAGATCCGCCATG
1 AAGGCTTCCATTTCATAGATTCGTCATG
*
24301664 AAGGCTTCAATTTCATAGATTC-TCCATG
1 AAGGCTTCCATTTCATAGATTCGT-CATG
*
24301692 AAGGCTTCCATTTCATAAATTC-TCCATG
1 AAGGCTTCCATTTCATAGATTCGT-CATG
*
24301720 AAGGCTTCCATTTCATAGATTC-TCCACG
1 AAGGCTTCCATTTCATAGATTCGT-CATG
* * *
24301748 AAGACTTCAATTTCACAGATT
1 AAGGCTTCCATTTCATAGATT
24301769 GCCACAAAGG
Statistics
Matches: 176, Mismatches: 38, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
27 20 0.11
28 156 0.89
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.35
Consensus pattern (28 bp):
AAGGCTTCCATTTCATAGATTCGTCATG
Found at i:24301719 original size:111 final size:111
Alignment explanation
Indices: 24301534--24301736 Score: 318
Period size: 111 Copynumber: 1.8 Consensus size: 111
24301524 AAAGGTTTCT
* * * * *
24301534 ATTTCTTAGATCCGTCACGAAGGCTTCCATTTCAAAGATTCACCATGAAGGCTTTCATTTTATAG
1 ATTTCTTAGATCCGCCACGAAGGCTTCAATTTCAAAGATTCACCATGAAGGCTTCCATTTCATAA
24301599 ATTTGCCATGAAGGCTTCCATTTCATATATTGGCACAAAGCCTTCC
66 ATTTGCCATGAAGGCTTCCATTTCATATATTGGCACAAAGCCTTCC
* * *
24301645 ATTTCTTAGATCCGCCATGAAGGCTTCAATTTCATAGATTCTCCATGAAGGCTTCCATTTCATAA
1 ATTTCTTAGATCCGCCACGAAGGCTTCAATTTCAAAGATTCACCATGAAGGCTTCCATTTCATAA
24301710 ATTCT-CCATGAAGGCTTCCATTTCATA
66 ATT-TGCCATGAAGGCTTCCATTTCATA
24301737 GATTCTCCAC
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
111 82 0.99
112 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (111 bp):
ATTTCTTAGATCCGCCACGAAGGCTTCAATTTCAAAGATTCACCATGAAGGCTTCCATTTCATAA
ATTTGCCATGAAGGCTTCCATTTCATATATTGGCACAAAGCCTTCC
Found at i:24301726 original size:56 final size:56
Alignment explanation
Indices: 24301552--24301768 Score: 242
Period size: 56 Copynumber: 3.9 Consensus size: 56
24301542 GATCCGTCAC
* * * *
24301552 GAAGGCTTCCATTTCAAAGATTCACCATGAAGGCTTTCATTTTATAGATT-TGCCAT
1 GAAGGCTTCCATTTCATAGATTCTCCATGAAGGCTTCCATTTCATAGATTCT-CCAT
* ** * * * *
24301608 GAAGGCTTCCATTTCATATATTGGCACA--AAGCCTTCCATTTCTTAGATCCGCCAT
1 GAAGGCTTCCATTTCATAGATTCTC-CATGAAGGCTTCCATTTCATAGATTCTCCAT
* *
24301663 GAAGGCTTCAATTTCATAGATTCTCCATGAAGGCTTCCATTTCATAAATTCTCCAT
1 GAAGGCTTCCATTTCATAGATTCTCCATGAAGGCTTCCATTTCATAGATTCTCCAT
* * * *
24301719 GAAGGCTTCCATTTCATAGATTCTCCACGAAGACTTCAATTTCACAGATT
1 GAAGGCTTCCATTTCATAGATTCTCCATGAAGGCTTCCATTTCATAGATT
24301769 GCCACAAAGG
Statistics
Matches: 132, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
54 2 0.02
55 41 0.31
56 87 0.66
57 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (56 bp):
GAAGGCTTCCATTTCATAGATTCTCCATGAAGGCTTCCATTTCATAGATTCTCCAT
Found at i:24301788 original size:111 final size:111
Alignment explanation
Indices: 24301541--24301788 Score: 284
Period size: 111 Copynumber: 2.2 Consensus size: 111
24301531 TCTATTTCTT
* * * * *
24301541 AGATCCGTCACGAAGGCTTCCATTTCAAAGATTCACCATGAAGGCTTTCATTTTATAGATTTGCC
1 AGATCCGCCACAAAGGCTTCCATTTCAAAGATTCACCATGAAGGCTTCCATTTCATAAATTTGCC
* * * * **
24301606 ATGAAGGCTTCCATTTCATATATTGGCACAAAGCCTTCCATTTCTT
66 ATGAAGGCTTCCATTTCATAGATTGCCACAAAGACTTCAATTTCAC
** * * *
24301652 AGATCCGCCATGAAGGCTTCAATTTCATAGATTCTCCATGAAGGCTTCCATTTCATAAATTCT-C
1 AGATCCGCCACAAAGGCTTCCATTTCAAAGATTCACCATGAAGGCTTCCATTTCATAAATT-TGC
* *
24301716 CATGAAGGCTTCCATTTCATAGATTCTCCACGAAGACTTCAATTTCAC
65 CATGAAGGCTTCCATTTCATAGATT-GCCACAAAGACTTCAATTTCAC
* *
24301764 AGAT-TGCCACAAAGGTTTCCATTTC
1 AGATCCGCCACAAAGGCTTCCATTTC
24301789 TCTAGCCTGT
Statistics
Matches: 114, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
111 94 0.82
112 20 0.18
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.33
Consensus pattern (111 bp):
AGATCCGCCACAAAGGCTTCCATTTCAAAGATTCACCATGAAGGCTTCCATTTCATAAATTTGCC
ATGAAGGCTTCCATTTCATAGATTGCCACAAAGACTTCAATTTCAC
Found at i:24302307 original size:31 final size:31
Alignment explanation
Indices: 24302272--24302334 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
24302262 GTCATTTGGG
* *
24302272 TTTATCAGGCAATATGTGCCGGTGATTATAT
1 TTTATCAGGCAATATGTACCGGTGACTATAT
* * *
24302303 TTTATCAGGTACTATGTACTGGTGACTATAT
1 TTTATCAGGCAATATGTACCGGTGACTATAT
24302334 T
1 T
24302335 ATCGGGTACT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (31 bp):
TTTATCAGGCAATATGTACCGGTGACTATAT
Found at i:24304132 original size:45 final size:41
Alignment explanation
Indices: 24304073--24304182 Score: 107
Period size: 45 Copynumber: 2.6 Consensus size: 41
24304063 TTTGGTTCGC
* *
24304073 TGTATTGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
24304115 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
24304158 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
24304183 TAGTGGAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 21 0.38
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:24309484 original size:42 final size:42
Alignment explanation
Indices: 24309420--24309507 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
24309410 CGATTAGGGG
24309420 TGTATTGGCTATGCCAACACACCAAACCAAACATGGTGTAAA
1 TGTATTGGCTATGCCAACACACCAAACCAAACATGGTGTAAA
*
24309462 TGTATTGGCTATGCCAATACACCAAACCAAACATGGTGTAAA
1 TGTATTGGCTATGCCAACACACCAAACCAAACATGGTGTAAA
24309504 TGTA
1 TGTA
24309508 ATAGCCCGAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.24
Consensus pattern (42 bp):
TGTATTGGCTATGCCAACACACCAAACCAAACATGGTGTAAA
Found at i:24309913 original size:20 final size:20
Alignment explanation
Indices: 24309890--24309930 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
24309880 GGACTAAATT
24309890 GTAACAAATGCAAAATTATG
1 GTAACAAATGCAAAATTATG
*
24309910 GTAATAAATGCAAAATTATG
1 GTAACAAATGCAAAATTATG
24309930 G
1 G
24309931 GAAATGATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (20 bp):
GTAACAAATGCAAAATTATG
Found at i:24312069 original size:51 final size:51
Alignment explanation
Indices: 24311993--24312225 Score: 385
Period size: 51 Copynumber: 4.6 Consensus size: 51
24311983 TTTGAGTACT
* * * *
24311993 TCTGATGAGTGACAAGTGGCAAGTGATAAGTAGTAGCTTTAGCTACACTCA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
24312044 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
24312095 TCTGATCAGTGACAAGTAACAAGGGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
24312146 TCTGATCAGTGACAAGTAACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
24312197 TCTGATCAGGGATAAGTGACAAGTGATAA
1 TCTGATCAGTGACAAGTGACAAGTGATAA
24312226 ATGTGATCCG
Statistics
Matches: 172, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 172 1.00
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (51 bp):
TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:24313335 original size:18 final size:18
Alignment explanation
Indices: 24313306--24313371 Score: 73
Period size: 18 Copynumber: 3.8 Consensus size: 18
24313296 CATTTATAAT
24313306 TTATCA-TTTATCAGGCA
1 TTATCATTTTATCAGGCA
* *
24313323 TTGTCATTTTATCAGACA
1 TTATCATTTTATCAGGCA
* *
24313341 TTATCGTTTTATCAGGCT
1 TTATCATTTTATCAGGCA
*
24313359 TTAT-AATTTATCA
1 TTATCATTTTATCA
24313372 AGTATAATCG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
17 12 0.30
18 28 0.70
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.47
Consensus pattern (18 bp):
TTATCATTTTATCAGGCA
Found at i:24318078 original size:415 final size:415
Alignment explanation
Indices: 24317055--24324907 Score: 10835
Period size: 415 Copynumber: 19.0 Consensus size: 415
24317045 TATTTTGGTT
* *
24317055 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTAAAGTATCATTTATGTTTTCTTTGTTATTTGTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
* *
24317120 ATAAACATCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACACCAAACACACAA
66 ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAA
* * * *
24317185 TTATCACTAGGGTTCAAAAACTCTAATATTTGATATGAAATGAAAAGGAATAAAAAGGAGCATCA
131 TTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTA
* * *
24317250 AGGACAAAAAAGAAAGAAGGTACGTAGCATAGGTGAAGAAAGGTGAAGAAGAGAGCAGCAATTGT
196 AGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT
* * * * *
24317315 CTACTCAACAGGGTCCTTAGAGATACTTGCCTTTTTAAGTAAAAATTTCATGCGATTTTCGAATT
261 CTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATT
* *
24317380 GTATCATAGTCCTCTATATAAGTAGTTAGACATTAAGGTTCAGTTAGTCTGTTAGTCAACAC-CC
326 GTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCC
24317444 TTATATAATATGTACAGCGCCTTTGC
391 -TATATAATATGTACAGCGCCTTTGC
*
24317470 --------A----TTAATGAATAAAGTCTTCTTAAGTATCATTTATGTTTTCTTTGTTATTTGTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
* * * * *
24317523 ATAAACTTCAACACTACGCTTAAACTTCCTCCTCCCTTTACAAACAAAAAATGCCAAACACACAA
66 ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAA
* *
24317588 TTATCACTAGGGTTCAAAAACTCTAATGTCTGATATGAAATTAAAAAGAATGAAAAGGAGCATTA
131 TTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTA
24317653 AGGACAAAAAGGAAAGAAGAG-ACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTG
196 AGGACAAAAAGGAAAGAAG-GCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTG
* * * *
24317717 TCTGCCCAACAGGGTCCTTAGAGATACTTGCTTTTTCAAGTAAATATTTCATGTGATTTCGAAAT
260 TCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAAT
* * * *
24317782 TGTGTCATAGTCCTCTATATAAGTAGTGAGTCGTTAAGGTTCAGTTAGTTTGTTAGTCAACACTC
325 TGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTC
* * *
24317847 CTATATAATATGTACAACGCTTTTGT
390 CTATATAATATGTACAGCGCCTTTGC
* * *
24317873 ATTAAAGAATGGCTTAATCAATAAAGTTTTCTTAAGTATCATTTCTCTTTTCTTTGTTATTTGTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
* * *
24317938 ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCTCCTTACAAACAAAAAATGCAAAACACACAA
66 ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAA
* * *
24318003 TTATCACTAGGGGTCAAAAACTCTAATATTTGATATGAAATGAAAAAGAATGAAAAGGAACATTA
131 TTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTA
*
24318068 AGGTCAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAA-GTGAAGAAGGGAGCAGCAATTGT
196 AGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT
* * *
24318132 CTG-TACAATAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAATTCATGCGATTTTCAAAT
261 CTGCT-CAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAAT
24318196 TGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTC
325 TGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTC
* *
24318261 ATATATAATATGTATAGCGCCTTTGC
390 CTATATAATATGTACAGCGCCTTTGC
* * * * * * *
24318287 ATTAAAGAATGGATTTATGAATAAAGACTTCTGAAGTTTCATTTATGTTTTCTTTGTTATTTGTA
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
**** *** *
24318352 ATAAACTTCAACACCAAACTTAGACTTCTTCCTCTTGTTACAAA-ATAAAAATGCCAAACACACA
66 ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACA-AAAAACGCCAAACACACA
* * * *
24318416 ATTATCACTAGGGTTCAAAAACTCCAATATCTGATATGGAATGAAAAAGAAT-AAAATGAGCCTT
130 ATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATT
* * * *
24318480 AACGACGAAAAGGAAAGAAGGCACGTAGAAGAGGTGAAGAAAGGTGAAGAAGGGAGCAGAAGGGA
195 AAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGC--------
*
24318545 GTAGCAATTGTCTGCTCAACAGGGTCCTCAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCG
252 --AGCAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCG
* * *
24318610 ATTTCCAAATGGTATCATAGTCCTCTATATAAGTAGTTAGCCTTTAAGGTTTAGTTAGTCTGTTA
315 ATTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTA
* *
24318675 GTCAGCACT-CTGATATAATATGCACAGCGCCTTTGC
380 GTCAACACTCCT-ATATAATATGTACAGCGCCTTTGC
* * * *
24318711 ATTAAAAAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTATGTTTTCTTTCTTATTTATT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
* * * * *
24318776 ATAAACATCAATATTGCGCTTAGACTTCTTCCTCCCCTTACAAATAAAAAACGCAAAACACACAA
66 ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAA
* * *
24318841 TTATCACTAGGGTTCAAAAATTCTAACATCTGATATGAAATGAAAAAGAATAAAAAGGAGCATTA
131 TTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTA
*
24318906 AGGACAAAAAAGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT
196 AGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT
** * * * *
24318971 CAACTCAACAGGGTCCTTAGAGTTACTTTCCTTTTTAAGTAAATATTTCATGCGATTTACAAATT
261 CTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATT
* * * **
24319036 GTATCTTAGTCCTATATATAAGTAGTTAGCTGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTAT
326 GTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCC
*
24319101 TATATAATATGTACAGTGCCTTTGC
391 TATATAATATGTACAGCGCCTTTGC
*** * * * * *
24319126 ATTAAAGAACAACTTAATGAATAAAGTATTCCTAAATATCATTTATGTTTTCTTTGTAATTTGTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
* * * *
24319191 ATAAACTTCAACACTGCGCTTAAACTTCTTGCTCCCCTTACAAACAAAAAATGCAAAACACACAA
66 ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAA
* *
24319256 TTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAGAGAATGAAAATGAGCATTA
131 TTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTA
*
24319321 AGGA-AAAAA-GAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGAAATTGT
196 AGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT
* * * * *
24319384 CTGCACAACAGGGTCCTTAGAGATACATCCCTTTTTAAGTAAATAATTCATGCGATTTCCAAATT
261 CTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATT
* * *
24319449 GTATCATAGTCCTCTATACAGGTAGTTAGCCATTAAGGTTCAGTTAGTCTGTTAGTCAACACTCC
326 GTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCC
24319514 TATATAATATGTACAGCGCCTTTGC
391 TATATAATATGTACAGCGCCTTTGC
* * * *
24319539 ATTAAAGAATGACTTTATGAATAAAGTCTTCTTAAGTTTCATTTCTGTTTTCATTGTTATTTGTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
** *
24319604 ATAAACTTCAACACTAAGCTTAGACTTCTTCCACCCCTTACAAACAAAAAACGCCAAACACACAA
66 ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAA
* * * *
24319669 TTATCACTAGGGTTCAAAAACTCTAATATCTGATATGGAATGAAAAAGAATAAAAATGAGAATTA
131 TTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTA
* * * *
24319734 AGGACAAAAAGGAAAGAAGGCACGTAGAAGAGGTGAAGAAAGGCGAAGAAGGAAGCAGCAATTGT
196 AGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT
* * * * * * *
24319799 CTGCACAATAGGATCCTTAAAGATACTTCCCTTTTCAAATAAATAGTTCATGCGATTTCCAAATT
261 CTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATT
* * * * *
24319864 GTATCATAGTCTTCTATATTAGTAGTTAGCCGTTAAGATTTAGTTAGTCTGTTAGTCAGCACTCC
326 GTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCC
* * *
24319929 GATATAATATGTACAGTGCCTTTAC
391 TATATAATATGTACAGCGCCTTTGC
*
24319954 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTATTATTTGTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
* * * ** *
24320019 ATAAACTTCAACACTACGCTTAAACTTCTTCCTCCCCTTACAAATAAAAAACGTAAAATACACAA
66 ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAA
* * * *
24320084 TTATCACTAGGGGTAAAAAACTCTAATATCTTATATGAAATGAAAAAGAATGAAAATGAGCATTA
131 TTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTA
* * * * * *
24320149 ATGACAAAAAAGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAACAAAGCAGTAGCAATTGT
196 AGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT
* * * * * * * *
24320214 CTGCACAATAGGATCCTTAGGGATACTTCCCTTTTAAAATAAATAGTTCATGCGATTTCCAAATT
261 CTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATT
* **
24320279 GTATCATAGTCCTCTATATTAGTAGTTAGCCGTTAAGGTTTTGTTAGTCTGTTTA-TCAACACT-
326 GTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTG-TTAGTCAACACTC
* *
24320342 GTGATATAATATGTACAGTGCCTTTGC
390 CT-ATATAATATGTACAGCGCCTTTGC
* * *
24320369 ATTAAAGAATGGAC-TAATGAATATAGTCTTCTTAAG-ACCATTTCTATTTTCTTTGTTATTTGT
1 ATTAAAGAATGG-CTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGT
* * * *
24320432 TATAAACTTCAACACTGCACTTAGAATTCTTCCTCCCCATACAAAGAAAAAACGCCAAACACACA
65 TATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACA
* *
24320497 ATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATAAAAAAGAATGAAATGGAGCATT
130 ATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATT
* * * *
24320562 AAGGACAAAAAGGAAAGAAGGCAAGTAGCGTAGGTGAAGAAAGGTGAAGAAGGCAGCAACAATTG
195 AAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTG
** ** * * * * *
24320627 TCTGGACAACAGAATCCTTAGAGATACATCCCTTTTCAAATAAATAGTTCAAGCGATTTCCAAAT
260 TCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAAT
* *
24320692 TGTATCATAGTCCTCTGTATAAGTAGTTAACCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTC
325 TGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTC
* ** *
24320757 CGATATAATATGTACAGTTCCTTTGT
390 CTATATAATATGTACAGCGCCTTTGC
*
24320783 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATGATTTCTGTTTTCTTTGTTATTTGTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
* * * * *
24320848 ATAAATTTCAACACTGTGCTTAGATTTCTTCCTCCCCTTACAAACAAAATATGCCAAACACACAA
66 ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAA
* * *
24320913 TAATCACTAGGGTTTAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAGGGAGCATTA
131 TTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTA
*
24320978 AGGACAAAAAGGAAAGAAGGCACGTAGC--A--T------AGGTGAAGAAGGCAGCAGCAATTGT
196 AGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT
* * * *
24321033 CTGCTCAACAGGGCCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTAATGCAATTTCTAAATT
261 CTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATT
* ** *
24321098 GTGTCATAGTTTTATATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCC
326 GTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCC
24321163 TATATAATATGTACAGCGCCTTTGC
391 TATATAATATGTACAGCGCCTTTGC
* * * * *
24321188 ATTAAAGAATGACTTAATGAAGAAAGTCTTCTTAAGTATCTTTTTTATTTTCTTTGTTATTTGTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
* *
24321253 ATAAACTTCAACACTGCGCTTAAAAC-TCTTCCTCCCCTTACAAACAAAAAACGCCAAACACATA
66 ATAAACTTCAACACTGCGCTT-AGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACA
* * * **
24321317 ATTATCACTAGGGTTTAAAAACTCTAATATCTGATATAAAATGGAAAAGAATGAAAATTAGCATT
130 ATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATT
* * *
24321382 AAGGACAAAAAGGGAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGCAGTAGCAATTG
195 AAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTG
* * * * * *
24321447 TCTGCTCAACAGGGCCCTTAAAGATACTTGCCTTTTCAAGTAAATATTTAATGCAATCTCTAAAT
260 TCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAAT
* ** *
24321512 TGTGTCATAGTTTTATATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTC
325 TGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTC
*
24321577 CTATATAATATGTACAACGCCTTTGC
390 CTATATAATATGTACAGCGCCTTTGC
* * * * *
24321603 ATTAAAGAATGACTTAATGAAGAAAGTCTTCTTAAGTATCGTTTTTATTTTCTTTGTTATTTGTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
* * * * *
24321668 ACAAACTTCAACACTGCGCTTAAAATTCTTCCTCCCCTTACAAACAAAAAACACAAAACACACAA
66 ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAA
* * * *
24321733 TTATCACTAGGGTTTAAAAACTCTAATATCTGATATAAAATGGAAAAGAATGAAAATGAGCATTA
131 TTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTA
* * *
24321798 AGGACAAAATGGAAAGAAGGCACGTAGCATAGGTGAAGAAATGTGAAGAATGGAGCAGCAATTGT
196 AGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT
* * *
24321863 CTGCCCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGTGATTTCGAAATT
261 CTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATT
* * *
24321928 GTGTCATAGTCCTCTATATAAGTAGTGAGTCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCC
326 GTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCC
* * * *
24321993 GATATAATATGTATAGTGCTTTTGC
391 TATATAATATGTACAGCGCCTTTGC
* * * *
24322018 ATTAAAGAATGGATT-ATGAATAAAGTCTTTTTAAGTATCATTTCTATTTTTTTTTTGTTATTTG
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTC--TGTTTTCTTTGTTATTTG
* * *
24322082 TTATAAACTTCAACACTTCGCTTAGACTTCTTCCAT-GCCTTACTAACAAAAAACGCCAAACACA
64 TTATAAACTTCAACACTGCGCTTAGACTTCTTCC-TCCCCTTACAAACAAAAAACGCCAAACACA
* * *
24322146 CAATTATCATTAGGGGTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAATGAGCA
128 CAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCA
* * ** *
24322211 TTAAGGACAAAAAGGAAAGAAGGCATGTAGCATAGGTGAAAAAAGGTGAAGAAGGTTGCATCAAT
193 TTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAAT
* * * * * *
24322276 TATCTGCTCAAAAGGGTCCTTAGAGATACTTTCTTTTTCAAGTAAATATCTCATGTGATTTCCAA
258 TGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAA
* * * * * * *
24322341 ACTGTATCATAGTCCTTTATATAAGTAGTTAGCCCTTAAGGTTCATTTACTTTGTAAGTCAACAC
323 ATTGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACAC
***
24322406 TAAAATATAATATGTACAGCGCCTTTGC
388 TCCTATATAATATGTACAGCGCCTTTGC
* * * * *
24322434 ATTAATGAATGACTTAAGGAATAAAGTCTTCTTAAGTATCATTTATGTTTTCTTTGTTATTTTTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTA-TTTGT
* * * * *
24322499 TACAAACTTCAACACTACGCTTAGACTTAC-TCCACCCCTTACAAACAAGAAACGCCAAACACAT
65 TATAAACTTCAACACTGCGCTTAGACTT-CTTCCTCCCCTTACAAACAAAAAACGCCAAACACAC
* * *
24322563 AATTATCACTAGGGTTCAAAAACTCTAATATTTGATATGAAATGAAAAGGAATAAAAAGGAGCAT
129 AATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCAT
* * * * * *
24322628 CAAGGACAAAAAGGAAAGAAGGGACGTAGCATATGTGAAGAAAGGTGAAGAATGGAGAACCAATT
194 TAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATT
* * * * * *
24322693 GTCTACCCAACAGGGCCCTTATAGATAATTGCCCTTTCAAGTAAATATTTCATGCGATTTCCAAA
259 GTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAA
* * * *
24322758 TTGTATCATAGTCCTTTGTATAAGTAGTTAGCCATTAAGGTTCAGTTACTCTGTTAGTCAACACT
324 TTGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACT
24322823 CCTATATAATATGTACAGCGCCTTTGC
389 CCTATATAATATGTACAGCGCCTTTGC
* * *
24322850 ATTAATGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTATGTTTTTTTTTGTTATTTGT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTG-TTTTCTTTGTTATTTGT
*
24322915 TATAAACTTCAACACTACGCTTAGACTT-TCTCCTCCCCTTACAAACAAAAAACGCCAAACACAC
65 TATAAACTTCAACACTGCGCTTAGACTTCT-TCCTCCCCTTACAAACAAAAAACGCCAAACACAC
* * *
24322979 AATTATCACTAGGGTTCAAAAAATCTAATATCTGATATGAAATGAAAAAGAATGGAAAGGACCAT
129 AATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCAT
* **
24323044 TAAGGACAAAAAGGAATGAAGGGTCGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCCA-CAAT
194 TAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAG-CAGCAAT
* * *
24323108 TGTCTGCCCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATACGATTTCTAA
258 TGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAA
* * * * *
24323173 ATTGTATCATAGTCCTCTATATAAGTAGTGAGCTGTTAAGGATCAGTTAGTCTATTACTCAACAC
323 ATTGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACAC
*
24323238 TCCTATATAATATGTACAACGCCTTTGC
388 TCCTATATAATATGTACAGCGCCTTTGC
* * * * *
24323266 ATTAATGAATGGCTTAATGAATAAAGTCTTATTAAATATCATTTTTGTTTTCTTTGTTATTTTTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
* * *
24323331 ATAAA-TATCAACACTACGCTTAGACTTCCTCCTCCCCTTACAAACAAAAAACACCAAACACACA
66 ATAAACT-TCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACA
*
24323395 ATTATCACTAGGGTTCAAAAACTCTTATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATT
130 ATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATT
* * * * *
24323460 AATGACAAAAAGGAAATAAGGCATGTAGCATAGGTGAAGAAAGGTGAAGAAAGGAGCAACAATTG
195 AAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTG
* * * ** * * * *
24323525 GCTACCCAACAACGTCCTTAGAGATTCTTTCCTTTTCAAGTAAATATTTTATACGATTTCCAAAT
260 TCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAAT
* *
24323590 TGTATC--A----T-TATATAAGTAGTGAGCCGTTAAGGTTCAGTTAGTCTGTTACTCAACACTC
325 TGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTC
* * * *
24323648 TTATATAATATGTAGAGTGCTTTTGC
390 CTATATAATATGTACAGCGCCTTTGC
* * * * *
24323674 ATTAAAGAATGGCTTAATGGATAAAGTCTTTTTAAGTATTATTTCTGTTTTCTTTTTTATTTTTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
* * * *
24323739 ATAAACTTCAACACTACGCTTAGACTT-TCTCCACCCCTTACAATCAAAAAATGCCAAACACACA
66 ATAAACTTCAACACTGCGCTTAGACTTCT-TCCTCCCCTTACAAACAAAAAACGCCAAACACACA
*
24323803 ATTATCACTAGGGTTCAAAAACTCTAATATCTAATATGAAATGAAAAAGAATGAAAAGGAGCATT
130 ATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATT
* *
24323868 AAGGA-AAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAATGTGAAGAAGTGAGCAGCAATTG
195 AAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTG
* * * * * * *
24323932 TCTGCACAACAGGGTCCTCAGAGATGCATCCCTTTTCAAGTAAATAATTCATGTGATTTCCAAAT
260 TCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAAT
* * *
24323997 TATACCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAATTAGTCTGTTAGTCAACACTC
325 TGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTC
24324062 CTATATAATATGTACAGCGCCTTTGC
390 CTATATAATATGTACAGCGCCTTTGC
* * * * * *
24324088 ATTAAAGAATGACTTAATGAAGAAAGTCTTTTTAAGTATCTTTTTTTATTTTCTTTGTTATTTGT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATC-ATTTCTGTTTTCTTTGTTATTTGT
* * * *
24324153 TATAAACTTCAACACTGTGGTTAAAATTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACA
65 TATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACA
* * * * **
24324218 AGTATCACTAGGGTTTAAAAACTCTAATATCTGATATAAAATGGAAAAGAATGAAAATTAGCATT
130 ATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATT
*
24324283 AAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAAGTGAAGAAGGGAGCAGCAATTG
195 AAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTG
* * *
24324348 TCTGCTCAACCGGGTCCTTAGAGATACTTGTCTTTTCAAGTAAATATTTCATGCGATTTCTAAAT
260 TCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAAT
* * *
24324413 TGCATCATAGTCCTCTATATAAGTAGTGAGCCGTGAAGGTTCAGTTAGTCTGTTAGTCAACACTC
325 TGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTC
*
24324478 CTATATAATATGTACAACGCCTTTGC
390 CTATATAATATGTACAGCGCCTTTGC
* * *
24324504 ATTAAATAATGGCTTAATGAATAAAGTCTTCTCAAGTACCATTTCTGTTTTCTTTGTTATTTGTT
1 ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
*
24324569 ATAAACTTGAACACTGCGCTTAGACTTCTTCCTCCCCTTACTAAA-AAAAAA-GCCAAACACACA
66 ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTAC-AAACAAAAAACGCCAAACACACA
* ** *
24324632 ATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATTAAAATTAATGAAAAGGATCATT
130 ATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATT
* * * * *
24324697 AAGGACAAAAAGGAAAGAAGACATGTAGCATAGGTGAAGAAAGGTGAAGAAGGCAACAGTAATTG
195 AAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTG
* * * * * * *
24324762 TCTACTCAACAGGGCCCTTAGAGGTACTTACCTTTTCAAGTAAATATTTAATGTGATTTCTAAAT
260 TCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAAT
* ** * * * *
24324827 TGTGTCATAGTTTTATATATGAGTAGTTAACCGTTAAGGTTCAGTTAATCTGTTAGTCAACACTC
325 TGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTC
24324892 CTATATAATATGTACA
390 CTATATAATATGTACA
24324908 CTGCGCTTAA
Statistics
Matches: 6633, Mismatches: 724, Indels: 163
0.88 0.10 0.02
Matches are distributed among these distances:
403 364 0.05
404 3 0.00
405 356 0.05
406 2 0.00
407 111 0.02
408 249 0.04
409 4 0.00
411 2 0.00
413 423 0.06
414 1098 0.17
415 2325 0.35
416 1288 0.19
417 40 0.01
423 1 0.00
424 303 0.05
425 64 0.01
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (415 bp):
ATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTT
ATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAA
TTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTA
AGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT
CTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATT
GTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCC
TATATAATATGTACAGCGCCTTTGC
Found at i:24321411 original size:32 final size:31
Alignment explanation
Indices: 24321375--24321442 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 31
24321365 GAATGAAAAT
24321375 TAGCATTAAG-GACAAAAAGG-GAAGAAGGCACG
1 TAGCA-TAAGTGA-AAAAAGGTGAAGAAGGCA-G
* *
24321407 TAGCATAGGTGAAGAAAGGTGAAGAAGGCAG
1 TAGCATAAGTGAAAAAAGGTGAAGAAGGCAG
24321438 TAGCA
1 TAGCA
24321443 ATTGTCTGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
31 15 0.47
32 17 0.53
ACGTcount: A:0.44, C:0.10, G:0.34, T:0.12
Consensus pattern (31 bp):
TAGCATAAGTGAAAAAAGGTGAAGAAGGCAG
Found at i:24326612 original size:414 final size:415
Alignment explanation
Indices: 24324905--24333449 Score: 11987
Period size: 415 Copynumber: 20.6 Consensus size: 415
24324895 TATAATATGT
* * * * * * *
24324905 ACACTGCGCTTAAAATTCTTCCTCCCCTGAAAAACAAAAAACGCCAAACACACAATTGTCACTTG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * * * *
24324970 GGTTCAGAAACTCTAATATCTGATATAAAATGGAAAAGAATGAAAATGAGCATTAACGACCAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* * * * *
24325035 GGAAAGAAGGCACGTAGCATAGGTGAAGACAGGTGTAGAAGGGAGCAACAATTGTCTGCCCAATA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* *
24325100 GGGTCCTTAGAGATACTT-CCATTTTCAAATAAATAGTTCATGCGATTTCCAAATTGTATCATAG
196 GGGTCCTTAGAGATACTTGCC-TTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAG
* * ** * *
24325164 TCCTCAATATAAGTAGTTAGCCGTTAAGGTTTAGTTAGTCTGTTTTTCAACACTCCGAAATAATA
260 TCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATA
* * *
24325229 TGTACAGTGCCTTTGCATTAAAGAATGG-TCTAATGAATAAAGTCTTTTTAAG-ATCATTTCTAT
325 TGTACAGCGCCTTTGCATTAAAGAATGGCT-TAATGAATAAAGTCTTCTTAAGTATCATTTCTGT
*
24325292 TTTCTTTGTTATTTCTTATAAACTTCA
389 TTTCTTTGTTATTTGTTATAAACTTCA
* * * *
24325319 ACATTGCGCTTAGACTTAC-TCCACCCCTTACAAACAAAAAATGCCAAACACACAATTATCACTA
1 ACACTACGCTTAGACTT-CTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTA
*
24325383 GGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAAGAATGAAAAGGAGCATTAAGGAAAAA
65 GGGTTCAAAAACTCTAATATCTGATATGAAATG-AAAAAGAATGAAAAGGAGCATTAAGGACAAA
* * * * *
24325448 AAGGAAAAAAAGG-ACGTAGCATAGGTGAAGAAATGAGAAGAAGGGAGCAACAATTGTCTGCCCA
129 AAGG-AAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCA
* * * * *
24325512 ACAGGGCCCTTAGAGAGACTTGCCCTTTT-AAGTGAATATTTCATGCTATTTCCAAATTGTGTCA
193 ACAGGGTCCTTAGAGATACTTG-CCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCA
* * * *
24325576 TAGTCTTTTATATAAGTAGTTAGCCGTTAAGGTTCAGTTACTCTGTTAGTTAACACT-CTAATAT
257 TAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCT-ATAT
* * * * *
24325640 AATATGTACAACGCCTTTGCATTAATGAATGGCTTTATGAATAAAGTCTTCTTAAGTTTCATTTT
321 AATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTC
24325705 TGTTTTCTTTGTTATTTGTTATAAACTTCA
386 TGTTTTCTTTGTTATTTGTTATAAACTTCA
* * * * *
24325735 ACACTAAGCTTAGACTTTTTCCACCCCTTACAAACAAAAAATGCCAAACACACAATTATTACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
*
24325800 TGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* * * * * *
24325865 GGAAATG-AGGCACATAGCATTGGTGAAGAAAGGTGAAGAAGCGAGTAGCAATTGTTTGCACAAC
131 GGAAA-GAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAAC
* * * * * * *
24325929 AGGGTCCTCAGAGATACATCCCTTTTCAAGTAAGTAATTCATGCGATTTCCAAATTATACCATAG
195 AGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAG
* * *
24325994 ACATCTATATAAGTAGTTAGCCGTTAAGGTTCAATTAGTCTGTTAGTCAACACTCCTATATAATA
260 TCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATA
* * * *
24326059 TGTACAACGCCTTTGCATTAAAGAATGGCTTTATGAATAAAGTCTTCTTAAGTTTCATTTTTGTT
325 TGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTT
24326124 TTCTTTGTTATTTGTTATAAACTTCA
390 TTCTTTGTTATTTGTTATAAACTTCA
* * * * *
24326150 ACACTAAGCTTAGACTTTTTCCACCCCTTACAAACAAAAAATGCCAAACACACAATTATTACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * *
24326215 TGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATAAAAAGTAGCATTAAGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
** * ** *
24326280 GGAAAGAAGGCACGTAGCATAGGTGAAG-AATTTGAAGAAGGCAAAAACAATTGTCTGCTCAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* * *
24326344 GGGCCCTTTGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCTAAATTGTATCATAGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
* * * *
24326409 CCTCTATATAAGTAATGAGCCGTTAAGGTTTAGTTAGCCTGTTAGTCAACACTCCTATATAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* *
24326474 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTTTTAAGTATCATTTCTATTT
326 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
*
24326539 TCTTTGTTATTTGCTATAAACTTCA
391 TCTTTGTTATTTGTTATAAACTTCA
* * * *
24326564 ACACTACGCTTAGACTTTTTCCTACCCATACAAAGAAAAAACGCCAAACACACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * * *
24326629 GGATCAAAAGCTCTAATATTTGATATGAAATGAAAAAGAATGAAAAGGAGCAATAATGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* *
24326694 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGTAGCAATTGTCTGCACAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* * * * * * *
24326759 GGTTCCTTAGATATACTTGCCTTTTTAAGTAAAGAATTCTTGCAATTTCCAAATTGTATCATAGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
* * * *
24326824 TCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTGAATACTCCTATAAAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* * * * *
24326889 GTACAGTGCCTTTACATTAAAGAATGGCTTTATGAATAAAGTCTTCTTAAGTTTCATTTATGTTT
326 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
24326954 TCTTTGTTATTTGTTATAAACTTCA
391 TCTTTGTTATTTGTTATAAACTTCA
24326979 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * *
24327044 GGTTCAAAAACTCTAATATTTGATATGGAATGAAAATGAATGAAAAGGAGCATTACGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* * * *
24327109 GGAAAGAAGGCATGTAGCATAGATGAAGAAAGGTGAAGAAGGTAGCAGTAATTGTCCT-CTCAAC
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT-CTGCTCAAC
* * *
24327173 AGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTT-ATGCCATTTCCATATTTTATCATAG
195 AGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAG
* * * *
24327237 TCCTTTATATAAGTAGTGAGCCGTTAAGGTTAAGTTAGTCTGTTAGTCAACACTCCTATACAATA
260 TCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATA
* * * *
24327302 TGTACAACGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCATAAGTTTCATTTCTCTT
325 TGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTT
24327367 TTCTTTGTTATTTGTTATAAACTTCA
390 TTCTTTGTTATTTGTTATAAACTTCA
* * * * * *
24327393 ACACTACGCTTAGACTTCTTCCTCTCCTTACAAATAAAAAACACTAAATACACAATTATTACT-G
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * *
24327457 GAGTTCAAAAACTCTAATATGTGATATAAAATGAAAAAGAATG-GAAGTTAGCATTAAGGACAAA
66 G-GTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAG-GAGCATTAAGGACAAA
* * *
24327521 AAGGAAAGAATGTACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGATCAGCAATTGTCCT-CTCA
129 AAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT-CTGCTCA
* *
24327585 ACAGGGTCTTTAGAGATACTTGCCTTTTCAAGTAAATA-TTAATGCGATTTCCAAATTGTATCAT
193 ACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCAT
* * *
24327649 AGTCCTCTATATAAGTAGTGAGCCGTTAAGGTT-AGGTTAGTCTGTTAGTCAACATTCCTATACA
258 AGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCA-GTTAGTCTGTTAGTCAACACTCCTATATA
* *
24327713 ATATGTACAACGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTAT
322 ATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCT
24327778 GTTTTCTTTGTTATTTGTTATAAACTTCA
387 GTTTTCTTTGTTATTTGTTATAAACTTCA
* * * *
24327807 ACACTACGCTTAGACTTCCTCCTCCCCTTACAAACGAAAAATGCCAAACACACAATTATTACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
*
24327872 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAATAGGAGCATTAAGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* * * * ** *
24327937 GGAAAGTAGGGACATAGCATAGGTGAAGAAAGGTAAAGAAGGGAGCAAAAATTGTCTGCCCAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
*
24328002 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATACGATTTCCAAATTGTATCATAGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
* * *
24328067 CCTTTATATAAGTAGTGAGCCGTTAAGGTTCAGTTAGTCTGTTACTCAACACTCCTATATAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* * * * * *
24328132 GTATAGTGCCTTTGCATTAAAGAATGGCTTAATGGATAAAGTCTTTTTAAGTATAATTTATGTTT
326 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
* *
24328197 TCTTTTTTATATT-TTATAAAATTCA
391 TCTTTGTTAT-TTGTTATAAACTTCA
* *
24328222 ACACTACGCTTAGACTT-TCTCCACCCTTTACAAACAAAAAACGCCAAACACACAATTATCACTA
1 ACACTACGCTTAGACTTCT-TCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTA
*
24328286 GGGTTCAAAAACTCTAATACCT-ACTATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAA
65 GGGTTCAAAAACTCTAATATCTGA-TATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAA
* * * * * *
24328350 AAGGAAAGAAGGCACGTAGTATAGGTGAAGAAAGGTGAAGAAGCGAGCAGTAATTGTTTGCACAC
129 AAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAA
* * * * * *
24328415 CAGGGTCATCAGAGATACATT-CCTTTTCAAGTAAGTAATTCATGCGATTTCCAAATTATACCAT
194 CAGGGTCCTTAGAGATAC-TTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCAT
* * *
24328479 AGTCCTTTATATAAGTAGTTAGTCGTTAAGGTTCAATTAGTCTGTTAGTCAACACTCCTATATAA
258 AGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAA
* * * *
24328544 TATGTACAACGCCTTTGCATTAAAGAATGGCTTTATGAAGAAAGTCTTCTTAAGTTTCATTTCTG
323 TATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTG
*
24328609 TTTTCTTTGTTATTTGTGATAAACTTCA
388 TTTTCTTTGTTATTTGTTATAAACTTCA
* * * *
24328637 ACACTAAGCTTAGACTTCTTCCACCCCTTACAAACAAAAAACACCAAACACACAATTATTACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* *
24328702 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATAAAAAGTAGCATTAAGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* ** * * *
24328767 GGAAAGAAGACACGTAGCATAGGTGAAGAAATTTGAAGAAGGCAACAACAATTGTCTGCTCAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* *
24328832 GGGCCCTTTGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
* *
24328897 CCTCTATATAAGTAGTGAGCCGTGAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* *
24328962 GTAGAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTTTTAAGTATCATTTCTGTTT
326 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
*
24329027 TCTTTGTTATTTGCTATAAACTTCA
391 TCTTTGTTATTTGTTATAAACTTCA
* * ** *
24329052 ACACTACGGTTAGACTTTTTCCTCCCCTTACAAACAAAAAATTCCAAACGCACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * * *
24329117 GGGTCAAAAGCTCTAATATTTGATATGAAATGAAAAAGAATGAAAAGGAGCAATAATGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* * * * *
24329182 GGAAAGAAGGCACGCAGCATAGGTGAA-AAAGGTGAAGAAGAGAGTAGCAATTATCTGCACAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* * * * * *
24329246 GGGTCCTTAGACATACTTGCATTTTCAAGTAAAGAATTCATGCAATTTCCGAATTGTATCATAGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
* * * *
24329311 CCTCTATATAAGTAGTTAGCCGTTAAGGTTTAGTTAGTCTGTTAGTGAACATTCCTATAAAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* * * * * *
24329376 GTACAGTGCCTTTACAGTAAAGAATGGCTTTATGAATAAAGTCTTCTTAAGTTTCATTTATGTTT
326 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
24329441 TCTTTGTTATTTGTTATAAACTTCA
391 TCTTTGTTATTTGTTATAAACTTCA
* *
24329466 ACACTACGCTTAGACTTCTTCCTCCCCTTACAGACAAAAAATGCCAAACACACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* *
24329531 GGTTCAAAAACTCTAATATTTGATATGGAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* * *
24329596 GGAAAGAAGGCACGTAGCATAGGTGAGGAAAGGTGAAGAAGGCAGCAGTAATTGTCTGCTCAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* * * * * * * * *
24329661 GTGCCCTTAGATATACTTGCCTTTTTATGTAAATATTTAATGTGATTTCCAAATTATGTCATAGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
** * *
24329726 TTTATATATAAGTGGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* * * *
24329791 GCACAGCGCCTTTGCATTAAAGAATTGCCTT-ATGAATAAAGTCTTCTTAAGTTTCATTTTTGTT
326 GTACAGCGCCTTTGCATTAAAGAA-TGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTT
*
24329855 TTCTTTGTTATTTGTTATAAACTACA
390 TTCTTTGTTATTTGTTATAAACTTCA
* * * * * * *
24329881 ACACTAAGCTTAGAATTCTTCCTCTCCTTACAAATAAAAAACGCTAAATACACAA-TAGTTACTA
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTA-TCACTA
* *
24329945 GGGTTCAAAAACTCTAATATCTGATATAAAATGAAAAAGAATG-AAAGTTAGCATTAAGGACAAA
65 GGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAG-GAGCATTAAGGACAAA
* *
24330009 AAGGAAAGAAGGCACATAGCATAGGTGAAGAAAGGTGAAGAAGGGATCAGCAATTGTCCT-CTCA
129 AAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT-CTGCTCA
*
24330073 ACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAGTATTT-ATGCGATTTCCAAATTGTATCAT
193 ACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCAT
* * * * * *
24330137 AGTCCTCTTTATAAGTAGTGAGCCGTTAAAGTTAAGTTAGTCTATTAGTCAACACTCCTATACAA
258 AGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAA
* * * *
24330202 TATGTACAACGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCATAAGTTTCATTTCTC
323 TATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTG
24330267 TTTTCTTTGTTATTTGTTATAAACTTCA
388 TTTTCTTTGTTATTTGTTATAAACTTCA
* * **
24330295 ACACTACGCTTAGACTTCTTCCTCCCCTTACTAATAAAAAACGTAAAACACACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
*
24330360 GGTTCAAAAACTCTAAGATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* * * * *
24330425 GGAAATAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGCAACAGCAATTATCTACTCAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
24330490 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGC-AGTTTCCAAATTGTATCATAG
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGA-TTTCCAAATTGTATCATAG
*
24330554 TCCTCTATATAAGTAGTTAGCCGTTAAGGTTAAGTTAGTCTGTTAGTCAACACTCCTATATAATA
260 TCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATA
* *
24330619 TGTACAACGCCTTTGCATTAAAGAATGGCTTAATGAAT-AAGTCTTCTTAAGTATCATTTATGTT
325 TGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTG-T
* *
24330683 TTTTTTTGTTATTTGTTATAAACATCA
389 TTTCTTTGTTATTTGTTATAAACTTCA
* * * *
24330710 ACATTGCGCTTAGACTTCTTCTTCCCCTTACAAACAAAAAACACCAAACACACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* *
24330775 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAATGAGCATTAACGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* **
24330840 GGAAAGAAGGCACGTAGCATAGGTGAAGAAATGCAAAGAAGGGAGCAGCAATTGTCTGCTCAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* * *
24330905 GGGTCCTTAAAGATACTTGCCTTTTCAAGTAAATATTTCATACGGTTTCCAAATTGTATCATAGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
* * * * *
24330970 CCTCTATATAAGTAGTTAGCCGTTAAGGTTTATTTATTCTGTTAGTCAACACTTCGATATAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* *
24331035 ATACAGTGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
326 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
*
24331100 TCTTTTTTATTTGTTATAAACTTCA
391 TCTTTGTTATTTGTTATAAACTTCA
* * * * *
24331125 ACATTGCGCTTAGACTTCTTCCTCCCTTTACAAAGAAAAAACGCAAAACACACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * *
24331190 GGGTCAAAAACTCTGATATCTGATATGAAATGAAAAAGAATGAAAAGGAGAATTAAGGAAAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
*
24331255 GGAAAGAAGGCACGTAGCATAGGTGAAG-AAGGT---------AGCATCAATTGTCTGCTCAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* * *
24331310 AGGTCCTTAGAGATTCTTGCCTTTTTAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
* * * * *
24331375 CCTCTATATAAGTAGTTAGGCTTTAAGGTTAAGTTAGTCTATTAGTCAACACTCTTATATAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* * * * *
24331440 GTACAGTGCCTGTGAATTAAAGAATGGCTTAATGAATAAAGTATTCTTAAGTATCATTTATGTTT
326 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
* * *
24331505 TCATTGTTATTTGTTATAAGCATCA
391 TCTTTGTTATTTGTTATAAACTTCA
* * * *
24331530 AGACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAATAGAAAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * *
24331595 GTTTCAAAAACTCTAATATCTTATATGAAATGAAAAAGAACGAAAAGGAGCATAAAGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* * * * ** *
24331660 AGAAAGAAGGCATGTAGCATAGGTGATGAAAGGTGAAGAAGGGAGCATCAATTCCCTGCTCAATA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* * *
24331725 GGGTCCTTAGAGATAGTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCATATTGTATCATGGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
* * * **
24331790 CCTCTGTATAAGTAGGTAGCCGTTAAGG-T---TTA----GTTAAT--A-TGTCCTATATAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* * *
24331844 GTACAGCGCCTTCGCATTAATGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTTTGTTT
326 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTG---
*
24331909 TTTTTTTTTGTTATTTGTTATAAACTTCA
388 -TTTTCTTTGTTATTTGTTATAAACTTCA
* * *
24331938 ACATTAGGCTTAGACTTCTTCCTCCCCTTACTAACAAAAAACGCCAAACACACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * *
24332003 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAATAGTGAAAATGAGCATTAAGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
24332068 GGAAAGAAGGCACGTAGCATAGGTGAAGAAATGG-GAAGAAGGGAGCAGCAATTGTCTGCTCAAC
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAA-GGTGAAGAAGGGAGCAGCAATTGTCTGCTCAAC
* *
24332132 AGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATAC-AGTTTCCAAATTGTTTCATA
195 AGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGA-TTTCCAAATTGTATCATA
* * * * *
24332196 GTCCTCTATATAAGTAGTTAGTCGTTATGTTTGAGTTAGTCTGTTAGTCAACACTTCTATATAAT
259 GTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAAT
*
24332261 ATGTACAGTGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTAT
324 ATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTC---
* * *
24332326 TTTTTTTTTTTTGATATTTGTTATAAACTTCA
386 --TGTTTTCTTTGTTATTTGTTATAAACTTCA
* * *
24332358 ACACTGCGCTTAGACTTCTTCCTCCCCTTACAAAGAAAAAACGCAAAACACACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * *
24332423 GGGTCAAAAACACTAATATCTGATATGAAATGAAAAAGAATGAAAGGGAGCATTATGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
*
24332488 GGAAAGAAAGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
** *
24332553 AAGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTC-TTCTGATTTCCAAATTGTATCATAG
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGC-GATTTCCAAATTGTATCATAG
* * *
24332617 TCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAAGACACATATATAATA
260 TCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATA
* *
24332682 TGTGCAGCGTCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTT
325 TGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTT
*
24332747 TTATTTGTTATTTGTTATAAACTTCA
390 TTCTTTGTTATTTGTTATAAACTTCA
*
24332773 ACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * *
24332838 GGTTCTAAAACTCTAATATCTGATATAAAATGAAAAAGAATGAAAATGAGCATTAAGGATAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* *
24332903 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAAGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACT
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* * *
24332968 GGGTCCTTAGAGATACTTGTCTTTTCAAGTAAATATTTCATGTGATTTCTAAATTGTATCATAGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
24333033 CCTCTATATATGTATCATAGTCCTCTATATATGTAGTGAGCCGTTAAGGTTCAGTTAGTCTGTTA
261 CCTC----TA--TAT-A-AG---------TA-GT--T-AGCCGTTAAGGTTCAGTTAGTCTGTTA
* *
24333098 GTCAACACTCCTATATAATATGTACAACGTCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCT
305 GTCAACACTCCTATATAATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCT
* *
24333163 TCTCAAGTATCATTTCTGTTTTCTTTGTTATTTGTTATAAACTTGA
370 TCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTTATAAACTTCA
* * *
24333209 ACACTGCGCTTAGACTTCTTCCTCCCCTTACTAAA-AAAAAAAGCCAAACGCACAATTATCACTA
1 ACACTACGCTTAGACTTCTTCCTCCCCTTAC-AAACAAAAAACGCCAAACACACAATTATCACTA
*
24333273 GGGTTCAAAAACTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAA
65 GGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAA
* * * * *
24333338 GGGAAAGTAGGTACGTAGC----GT------AGGTGAAGAAGGGAGCAACAATTGTCTACTCAAC
130 AGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAAC
* *
24333393 AGGGTCCTTAAAGATACGTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTG
195 AGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTG
24333450 ATTCCTCTCT
Statistics
Matches: 7261, Mismatches: 765, Indels: 198
0.88 0.09 0.02
Matches are distributed among these distances:
404 67 0.01
405 356 0.05
406 5 0.00
407 5 0.00
408 276 0.04
409 3 0.00
411 3 0.00
412 3 0.00
413 17 0.00
414 1963 0.27
415 3562 0.49
416 183 0.03
417 2 0.00
418 1 0.00
419 74 0.01
420 375 0.05
421 4 0.00
422 1 0.00
423 2 0.00
424 1 0.00
426 82 0.01
432 4 0.00
433 2 0.00
435 1 0.00
436 266 0.04
437 3 0.00
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (415 bp):
ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGT
CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
TCTTTGTTATTTGTTATAAACTTCA
Found at i:24326655 original size:829 final size:830
Alignment explanation
Indices: 24324905--24333449 Score: 11969
Period size: 829 Copynumber: 10.3 Consensus size: 830
24324895 TATAATATGT
* * * * * * *
24324905 ACACTGCGCTTAAAATTCTTCCTCCCCTGAAAAACAAAAAACGCCAAACACACAATTGTCACTTG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * * * *
24324970 GGTTCAGAAACTCTAATATCTGATATAAAATGGAAAAGAATGAAAATGAGCATTAACGACCAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* * * * *
24325035 GGAAAGAAGGCACGTAGCATAGGTGAAGACAGGTGTAGAAGGGAGCAACAATTGTCTGCCCAATA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* *
24325100 GGGTCCTTAGAGATACTT-CCATTTTCAAATAAATAGTTCATGCGATTTCCAAATTGTATCATAG
196 GGGTCCTTAGAGATACTTGCC-TTTTCAAGTAAATAATTCATGCGATTTCCAAATTGTATCATAG
* * ** * *
24325164 TCCTCAATATAAGTAGTTAGCCGTTAAGGTTTAGTTAGTCTGTTTTTCAACACTCCGAAATAATA
260 TCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATA
* * *
24325229 TGTACAGTGCCTTTGCATTAAAGAATGG-TCTAATGAATAAAGTCTTTTTAAG-ATCATTTCTAT
325 TGTACAGCGCCTTTGCATTAAAGAATGGCT-TAATGAATAAAGTCTTCTTAAGTATCATTTCTGT
* * * *
24325292 TTTCTTTGTTATTTCTTATAAACTTCAACATTGCGCTTAGACTTAC-TCCACCCCTTACAAACAA
389 TTTCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTT-CTTCCTCCCCTTACAAACAA
*
24325356 AAAATGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAA
453 AAAACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATG-AAAA
* * * *
24325421 AGAATGAAAAGGAGCATTAAGGAAAAAAAGGAAAAAAAGG-ACGTAGCATAGGTGAAGAAATGAG
517 AGAATGAAAAGGAGCATTAAGGACAAAAAGG-AAAGAAGGCACGTAGCATAGGTGAAGAAAGGTG
* * * * * *
24325485 AAGAAGGGAGCAACAATTGTCTGCCCAACAGGGCCCTTAGAGAGACTTGCCCTTTT-AAGTGAAT
581 AAGAAGGCAGCAGCAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTG-CCTTTTCAAGTAAAT
* * * * *
24325549 ATTTCATGCTATTTCCAAATTGTGTCATAGTCTTTTATATAAGTAGTTAGCCGTTAAGGTTCAGT
645 ATTTCATGCGATTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTGAGCCGTTAAGGTTCAGT
* * * * *
24325614 TACTCTGTTAGTTAACACT-CTAATATAATATGTACAACGCCTTTGCATTAATGAATGGCTTTAT
710 TAGTCTGTTAGTCAACACTCCT-ATATAATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAAT
* *
24325678 GAATAAAGTCTTCTTAAGTTTCATTTTTGTTTTCTTTGTTATTTGTTATAAACTTCA
774 GAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTTATAAACTTCA
* * * * *
24325735 ACACTAAGCTTAGACTTTTTCCACCCCTTACAAACAAAAAATGCCAAACACACAATTATTACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
*
24325800 TGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* * * * * *
24325865 GGAAATG-AGGCACATAGCATTGGTGAAGAAAGGTGAAGAAGCGAGTAGCAATTGTTTGCACAAC
131 GGAAA-GAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAAC
* * * * * *
24325929 AGGGTCCTCAGAGATACATCCCTTTTCAAGTAAGTAATTCATGCGATTTCCAAATTATACCATAG
195 AGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAATTCATGCGATTTCCAAATTGTATCATAG
* * *
24325994 ACATCTATATAAGTAGTTAGCCGTTAAGGTTCAATTAGTCTGTTAGTCAACACTCCTATATAATA
260 TCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATA
* * * *
24326059 TGTACAACGCCTTTGCATTAAAGAATGGCTTTATGAATAAAGTCTTCTTAAGTTTCATTTTTGTT
325 TGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTT
* * *
24326124 TTCTTTGTTATTTGTTATAAACTTCAACACTAAGCTTAGACTTTTTCCACCCCTTACAAACAAAA
390 TTCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAA
* * *
24326189 AATGCCAAACACACAATTATTACTAGTGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGA
455 AACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGA
* * **
24326254 ATAAAAAGTAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAG-AATTTGAAGA
520 ATGAAAAGGAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGA
** * * *
24326318 AGGCAAAAACAATTGTCTGCTCAACAGGGCCCTTTGAGATACTTGCCTTTTCAAGTAAATATTTC
585 AGGCAGCAGCAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTC
* * * *
24326383 ATGCGATTTCTAAATTGTATCATAGTCCTCTATATAAGTAATGAGCCGTTAAGGTTTAGTTAGCC
650 ATGCGATTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTGAGCCGTTAAGGTTCAGTTAGTC
24326448 TGTTAGTCAACACTCCTATATAATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAA
715 TGTTAGTCAACACTCCTATATAATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAA
* * *
24326513 AGTCTTTTTAAGTATCATTTCTATTTTCTTTGTTATTTGCTATAAACTTCA
780 AGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTTATAAACTTCA
* * * *
24326564 ACACTACGCTTAGACTTTTTCCTACCCATACAAAGAAAAAACGCCAAACACACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * * *
24326629 GGATCAAAAGCTCTAATATTTGATATGAAATGAAAAAGAATGAAAAGGAGCAATAATGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* *
24326694 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGTAGCAATTGTCTGCACAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* * * * * *
24326759 GGTTCCTTAGATATACTTGCCTTTTTAAGTAAAGAATTCTTGCAATTTCCAAATTGTATCATAGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAATTCATGCGATTTCCAAATTGTATCATAGT
* * * *
24326824 TCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTGAATACTCCTATAAAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* * * * *
24326889 GTACAGTGCCTTTACATTAAAGAATGGCTTTATGAATAAAGTCTTCTTAAGTTTCATTTATGTTT
326 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
24326954 TCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAA
391 TCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAA
* * *
24327019 ACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATTTGATATGGAATGAAAATGAA
456 ACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAA
* * *
24327084 TGAAAAGGAGCATTACGGACAAAAAGGAAAGAAGGCATGTAGCATAGATGAAGAAAGGTGAAGAA
521 TGAAAAGGAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAA
* *
24327149 GGTAGCAGTAATTGTCCT-CTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTT-
586 GGCAGCAGCAATTGT-CTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTC
* * * * *
24327212 ATGCCATTTCCATATTTTATCATAGTCCTTTATATAAGTAGTGAGCCGTTAAGGTTAAGTTAGTC
650 ATGCGATTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTGAGCCGTTAAGGTTCAGTTAGTC
* *
24327277 TGTTAGTCAACACTCCTATACAATATGTACAACGCCTTTGCATTAAAGAATGGCTTAATGAATAA
715 TGTTAGTCAACACTCCTATATAATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAA
* * *
24327342 AGTCTTCATAAGTTTCATTTCTCTTTTCTTTGTTATTTGTTATAAACTTCA
780 AGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTTATAAACTTCA
* * * * * *
24327393 ACACTACGCTTAGACTTCTTCCTCTCCTTACAAATAAAAAACACTAAATACACAATTATTACT-G
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * *
24327457 GAGTTCAAAAACTCTAATATGTGATATAAAATGAAAAAGAATG-GAAGTTAGCATTAAGGACAAA
66 G-GTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAG-GAGCATTAAGGACAAA
* * *
24327521 AAGGAAAGAATGTACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGATCAGCAATTGTCCT-CTCA
129 AAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT-CTGCTCA
* *
24327585 ACAGGGTCTTTAGAGATACTTGCCTTTTCAAGTAAAT-ATTAATGCGATTTCCAAATTGTATCAT
193 ACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAATTCATGCGATTTCCAAATTGTATCAT
* * *
24327649 AGTCCTCTATATAAGTAGTGAGCCGTTAAGGTT-AGGTTAGTCTGTTAGTCAACATTCCTATACA
258 AGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCA-GTTAGTCTGTTAGTCAACACTCCTATATA
* *
24327713 ATATGTACAACGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTAT
322 ATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCT
* *
24327778 GTTTTCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCCTCCTCCCCTTACAAACG
387 GTTTTCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACAAACA
* *
24327843 AAAAATGCCAAACACACAATTATTACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAA
452 AAAAACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAA
* * * * *
24327908 AGAATGAATAGGAGCATTAAGGACAAAAAGGAAAGTAGGGACATAGCATAGGTGAAGAAAGGTAA
517 AGAATGAAAAGGAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGA
* ** *
24327973 AGAAGGGAGCAAAAATTGTCTGCCCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAT
582 AGAAGGCAGCAGCAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAT
* *
24328038 TTCATACGATTTCCAAATTGTATCATAGTCCTTTATATAAGTAGTGAGCCGTTAAGGTTCAGTTA
647 TTCATGCGATTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTGAGCCGTTAAGGTTCAGTTA
* * * *
24328103 GTCTGTTACTCAACACTCCTATATAATATGTATAGTGCCTTTGCATTAAAGAATGGCTTAATGGA
712 GTCTGTTAGTCAACACTCCTATATAATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAA
* * * * *
24328168 TAAAGTCTTTTTAAGTATAATTTATGTTTTCTTTTTTATATT-TTATAAAATTCA
777 TAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTAT-TTGTTATAAACTTCA
* *
24328222 ACACTACGCTTAGACTT-TCTCCACCCTTTACAAACAAAAAACGCCAAACACACAATTATCACTA
1 ACACTACGCTTAGACTTCT-TCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTA
*
24328286 GGGTTCAAAAACTCTAATACCT-ACTATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAA
65 GGGTTCAAAAACTCTAATATCTGA-TATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAA
* * * * * *
24328350 AAGGAAAGAAGGCACGTAGTATAGGTGAAGAAAGGTGAAGAAGCGAGCAGTAATTGTTTGCACAC
129 AAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAA
* * * * *
24328415 CAGGGTCATCAGAGATACATT-CCTTTTCAAGTAAGTAATTCATGCGATTTCCAAATTATACCAT
194 CAGGGTCCTTAGAGATAC-TTGCCTTTTCAAGTAAATAATTCATGCGATTTCCAAATTGTATCAT
* * *
24328479 AGTCCTTTATATAAGTAGTTAGTCGTTAAGGTTCAATTAGTCTGTTAGTCAACACTCCTATATAA
258 AGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAA
* * * *
24328544 TATGTACAACGCCTTTGCATTAAAGAATGGCTTTATGAAGAAAGTCTTCTTAAGTTTCATTTCTG
323 TATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTG
* * *
24328609 TTTTCTTTGTTATTTGTGATAAACTTCAACACTAAGCTTAGACTTCTTCCACCCCTTACAAACAA
388 TTTTCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAA
* *
24328674 AAAACACCAAACACACAATTATTACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAA
453 AAAACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAA
* * * **
24328739 GAATAAAAAGTAGCATTAAGGACAAAAAGGAAAGAAGACACGTAGCATAGGTGAAGAAATTTGAA
518 GAATGAAAAGGAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAA
* * * *
24328804 GAAGGCAACAACAATTGTCTGCTCAACAGGGCCCTTTGAGATACTTGCCTTTTCAAGTAAATATT
583 GAAGGCAGCAGCAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATT
*
24328869 TCATGCGATTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTGAGCCGTGAAGGTTCAGTTAG
648 TCATGCGATTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTGAGCCGTTAAGGTTCAGTTAG
*
24328934 TCTGTTAGTCAACACTCCTATATAATATGTAGAGCGCCTTTGCATTAAAGAATGGCTTAATGAAT
713 TCTGTTAGTCAACACTCCTATATAATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAAT
* *
24328999 AAAGTCTTTTTAAGTATCATTTCTGTTTTCTTTGTTATTTGCTATAAACTTCA
778 AAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTTATAAACTTCA
* * ** *
24329052 ACACTACGGTTAGACTTTTTCCTCCCCTTACAAACAAAAAATTCCAAACGCACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * * *
24329117 GGGTCAAAAGCTCTAATATTTGATATGAAATGAAAAAGAATGAAAAGGAGCAATAATGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* * * * *
24329182 GGAAAGAAGGCACGCAGCATAGGTGAA-AAAGGTGAAGAAGAGAGTAGCAATTATCTGCACAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* * * * *
24329246 GGGTCCTTAGACATACTTGCATTTTCAAGTAAAGAATTCATGCAATTTCCGAATTGTATCATAGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAATTCATGCGATTTCCAAATTGTATCATAGT
* * * *
24329311 CCTCTATATAAGTAGTTAGCCGTTAAGGTTTAGTTAGTCTGTTAGTGAACATTCCTATAAAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* * * * * *
24329376 GTACAGTGCCTTTACAGTAAAGAATGGCTTTATGAATAAAGTCTTCTTAAGTTTCATTTATGTTT
326 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
*
24329441 TCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACAGACAAAAA
391 TCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAA
* * *
24329506 ATGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATTTGATATGGAATGAAAAAGAA
456 ACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAA
*
24329571 TGAAAAGGAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAGGAAAGGTGAAGAA
521 TGAAAAGGAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAA
* * * * * * *
24329636 GGCAGCAGTAATTGTCTGCTCAACAGTGCCCTTAGATATACTTGCCTTTTTATGTAAATATTTAA
586 GGCAGCAGCAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCA
* * * ** * * *
24329701 TGTGATTTCCAAATTATGTCATAGTTTTATATATAAGTGGTTAGCCGTTAAGGTTCAGTTAGTCT
651 TGCGATTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTGAGCCGTTAAGGTTCAGTTAGTCT
* *
24329766 GTTAGTCAACACTCCTATATAATATGCACAGCGCCTTTGCATTAAAGAATTGCCTT-ATGAATAA
716 GTTAGTCAACACTCCTATATAATATGTACAGCGCCTTTGCATTAAAGAA-TGGCTTAATGAATAA
* * *
24329830 AGTCTTCTTAAGTTTCATTTTTGTTTTCTTTGTTATTTGTTATAAACTACA
780 AGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTTATAAACTTCA
* * * * * * *
24329881 ACACTAAGCTTAGAATTCTTCCTCTCCTTACAAATAAAAAACGCTAAATACACAA-TAGTTACTA
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTA-TCACTA
* *
24329945 GGGTTCAAAAACTCTAATATCTGATATAAAATGAAAAAGAATG-AAAGTTAGCATTAAGGACAAA
65 GGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAG-GAGCATTAAGGACAAA
* *
24330009 AAGGAAAGAAGGCACATAGCATAGGTGAAGAAAGGTGAAGAAGGGATCAGCAATTGTCCT-CTCA
129 AAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGT-CTGCTCA
* *
24330073 ACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAGT-ATTTATGCGATTTCCAAATTGTATCAT
193 ACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAATTCATGCGATTTCCAAATTGTATCAT
* * * * * *
24330137 AGTCCTCTTTATAAGTAGTGAGCCGTTAAAGTTAAGTTAGTCTATTAGTCAACACTCCTATACAA
258 AGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAA
* * * *
24330202 TATGTACAACGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCATAAGTTTCATTTCTC
323 TATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTG
* *
24330267 TTTTCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACTAATAA
388 TTTTCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAA
** *
24330332 AAAACGTAAAACACACAATTATCACTAGGGTTCAAAAACTCTAAGATCTGATATGAAATGAAAAA
453 AAAACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAA
*
24330397 GAATGAAAAGGAGCATTAAGGACAAAAAGGAAATAAGGCACGTAGCATAGGTGAAGAAAGGTGAA
518 GAATGAAAAGGAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAA
* * *
24330462 GAAGGCAACAGCAATTATCTACTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATT
583 GAAGGCAGCAGCAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATT
* *
24330527 TCATGC-AGTTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTTAGCCGTTAAGGTTAAGTTA
648 TCATGCGA-TTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTGAGCCGTTAAGGTTCAGTTA
*
24330591 GTCTGTTAGTCAACACTCCTATATAATATGTACAACGCCTTTGCATTAAAGAATGGCTTAATGAA
712 GTCTGTTAGTCAACACTCCTATATAATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAA
* * *
24330656 T-AAGTCTTCTTAAGTATCATTTATGTTTTTTTTTGTTATTTGTTATAAACATCA
777 TAAAGTCTTCTTAAGTATCATTTCTG-TTTTCTTTGTTATTTGTTATAAACTTCA
* * * *
24330710 ACATTGCGCTTAGACTTCTTCTTCCCCTTACAAACAAAAAACACCAAACACACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* *
24330775 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAATGAGCATTAACGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* **
24330840 GGAAAGAAGGCACGTAGCATAGGTGAAGAAATGCAAAGAAGGGAGCAGCAATTGTCTGCTCAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* * * *
24330905 GGGTCCTTAAAGATACTTGCCTTTTCAAGTAAATATTTCATACGGTTTCCAAATTGTATCATAGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAATTCATGCGATTTCCAAATTGTATCATAGT
* * * * *
24330970 CCTCTATATAAGTAGTTAGCCGTTAAGGTTTATTTATTCTGTTAGTCAACACTTCGATATAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* *
24331035 ATACAGTGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
326 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
* * * * *
24331100 TCTTTTTTATTTGTTATAAACTTCAACATTGCGCTTAGACTTCTTCCTCCCTTTACAAAGAAAAA
391 TCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAA
* * *
24331165 ACGCAAAACACACAATTATCACTAGGGGTCAAAAACTCTGATATCTGATATGAAATGAAAAAGAA
456 ACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAA
* *
24331230 TGAAAAGGAGAATTAAGGAAAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAG-AAGGT------
521 TGAAAAGGAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAA
* * * *
24331288 ---AGCATCAATTGTCTGCTCAACAAGGTCCTTAGAGATTCTTGCCTTTTTAAGTAAATATTTCA
586 GGCAGCAGCAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCA
* * * *
24331350 TGCGATTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTTAGGCTTTAAGGTTAAGTTAGTCT
651 TGCGATTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTGAGCCGTTAAGGTTCAGTTAGTCT
* * * * *
24331415 ATTAGTCAACACTCTTATATAATATGTACAGTGCCTGTGAATTAAAGAATGGCTTAATGAATAAA
716 GTTAGTCAACACTCCTATATAATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAA
* * * * *
24331480 GTATTCTTAAGTATCATTTATGTTTTCATTGTTATTTGTTATAAGCATCA
781 GTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTTATAAACTTCA
* * * *
24331530 AGACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAATAGAAAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * *
24331595 GTTTCAAAAACTCTAATATCTTATATGAAATGAAAAAGAACGAAAAGGAGCATAAAGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
* * * * ** *
24331660 AGAAAGAAGGCATGTAGCATAGGTGATGAAAGGTGAAGAAGGGAGCATCAATTCCCTGCTCAATA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
* * * *
24331725 GGGTCCTTAGAGATAGTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCATATTGTATCATGGT
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAATTCATGCGATTTCCAAATTGTATCATAGT
* * * **
24331790 CCTCTGTATAAGTAGGTAGCCGTTAAGG-T---TTA----GTTAAT--A-TGTCCTATATAATAT
261 CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
* * *
24331844 GTACAGCGCCTTCGCATTAATGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTTTGTTT
326 GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTG---
* * * *
24331909 TTTTTTTTTGTTATTTGTTATAAACTTCAACATTAGGCTTAGACTTCTTCCTCCCCTTACTAACA
388 -TTTTCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACAAACA
24331974 AAAAACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAA
452 AAAAACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAA
* * *
24332039 ATAGTGAAAATGAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAATGG-G
517 AGAATGAAAAGGAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAA-GGTG
*
24332103 AAGAAGGGAGCAGCAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATA
581 AAGAAGGCAGCAGCAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATA
* * * * * * *
24332168 TTTCATAC-AGTTTCCAAATTGTTTCATAGTCCTCTATATAAGTAGTTAGTCGTTATGTTTGAGT
646 TTTCATGCGA-TTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTGAGCCGTTAAGGTTCAGT
* *
24332232 TAGTCTGTTAGTCAACACTTCTATATAATATGTACAGTGCCTTTGCATTAAAGAATGGCTTAATG
710 TAGTCTGTTAGTCAACACTCCTATATAATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATG
* * *
24332297 AATAAAGTCTTCTTAAGTATCATTTCTATTTTTTTTTTTTTGATATTTGTTATAAACTTCA
775 AATAAAGTCTTCTTAAGTATCATTTC-----TGTTTTCTTTGTTATTTGTTATAAACTTCA
* * *
24332358 ACACTGCGCTTAGACTTCTTCCTCCCCTTACAAAGAAAAAACGCAAAACACACAATTATCACTAG
1 ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
* * * *
24332423 GGGTCAAAAACACTAATATCTGATATGAAATGAAAAAGAATGAAAGGGAGCATTATGGACAAAAA
66 GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
*
24332488 GGAAAGAAAGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
131 GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
** * *
24332553 AAGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTC-TTCTGATTTCCAAATTGTATCATAG
196 GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAATTCATGC-GATTTCCAAATTGTATCATAG
* * *
24332617 TCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAAGACACATATATAATA
260 TCCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATA
* *
24332682 TGTGCAGCGTCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTT
325 TGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTT
* *
24332747 TTATTTGTTATTTGTTATAAACTTCAACACTGCGCTTAGACTTCTTCCTCCCCTTACAAACAAAA
390 TTCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAA
* *
24332812 AACGCCAAACACACAATTATCACTAGGGTTCTAAAACTCTAATATCTGATATAAAATGAAAAAGA
455 AACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGA
* * *
24332877 ATGAAAATGAGCATTAAGGATAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAAGTGAAGA
520 ATGAAAAGGAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGA
* * *
24332942 AGGGAGCAGCAATTGTCTGCTCAACTGGGTCCTTAGAGATACTTGTCTTTTCAAGTAAATATTTC
585 AGGCAGCAGCAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTC
* *
24333007 ATGTGATTTCTAAATTGTATCATAGTCCTCTATATATGTATCATAGTCCTCTATATATGTAGTGA
650 A--TG----C------G-AT--T--T-C-C-AAAT-TGTATCATAGTCCTCTATATAAGTAGTGA
* *
24333072 GCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATATGTACAACGTCTTTGCATT
694 GCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATATGTACAGCGCCTTTGCATT
*
24333137 AAAGAATGGCTTAATGAATAAAGTCTTCTCAAGTATCATTTCTGTTTTCTTTGTTATTTGTTATA
759 AAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTTATA
*
24333202 AACTTGA
824 AACTTCA
* * *
24333209 ACACTGCGCTTAGACTTCTTCCTCCCCTTACTAAA-AAAAAAAGCCAAACGCACAATTATCACTA
1 ACACTACGCTTAGACTTCTTCCTCCCCTTAC-AAACAAAAAACGCCAAACACACAATTATCACTA
*
24333273 GGGTTCAAAAACTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAA
65 GGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAA
* * * * *
24333338 GGGAAAGTAGGTACGTAGC----GT------AGGTGAAGAAGGGAGCAACAATTGTCTACTCAAC
130 AGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAAC
* * *
24333393 AGGGTCCTTAAAGATACGTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTG
195 AGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAATTCATGCGATTTCCAAATTG
24333450 ATTCCTCTCT
Statistics
Matches: 6876, Mismatches: 737, Indels: 193
0.88 0.09 0.02
Matches are distributed among these distances:
809 68 0.01
810 1 0.00
812 5 0.00
813 171 0.02
814 2 0.00
815 2 0.00
816 3 0.00
819 1 0.00
820 453 0.07
821 24 0.00
822 1 0.00
823 192 0.03
827 5 0.00
828 711 0.10
829 2886 0.42
830 1509 0.22
831 135 0.02
832 3 0.00
834 1 0.00
835 248 0.04
836 5 0.00
837 1 0.00
838 1 0.00
839 68 0.01
841 82 0.01
842 2 0.00
847 2 0.00
848 1 0.00
849 1 0.00
850 1 0.00
851 158 0.02
852 4 0.00
853 1 0.00
854 1 0.00
855 3 0.00
856 124 0.02
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (830 bp):
ACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAAACGCCAAACACACAATTATCACTAG
GGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAA
GGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAGCAATTGTCTGCTCAACA
GGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATAATTCATGCGATTTCCAAATTGTATCATAGT
CCTCTATATAAGTAGTTAGCCGTTAAGGTTCAGTTAGTCTGTTAGTCAACACTCCTATATAATAT
GTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAAGTCTTCTTAAGTATCATTTCTGTTT
TCTTTGTTATTTGTTATAAACTTCAACACTACGCTTAGACTTCTTCCTCCCCTTACAAACAAAAA
ACGCCAAACACACAATTATCACTAGGGTTCAAAAACTCTAATATCTGATATGAAATGAAAAAGAA
TGAAAAGGAGCATTAAGGACAAAAAGGAAAGAAGGCACGTAGCATAGGTGAAGAAAGGTGAAGAA
GGCAGCAGCAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCA
TGCGATTTCCAAATTGTATCATAGTCCTCTATATAAGTAGTGAGCCGTTAAGGTTCAGTTAGTCT
GTTAGTCAACACTCCTATATAATATGTACAGCGCCTTTGCATTAAAGAATGGCTTAATGAATAAA
GTCTTCTTAAGTATCATTTCTGTTTTCTTTGTTATTTGTTATAAACTTCA
Found at i:24333046 original size:21 final size:21
Alignment explanation
Indices: 24333022--24333067 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
24333012 ATTTCTAAAT
24333022 TGTATCATAGTCCTCTATATA
1 TGTATCATAGTCCTCTATATA
24333043 TGTATCATAGTCCTCTATATA
1 TGTATCATAGTCCTCTATATA
24333064 TGTA
1 TGTA
24333068 GTGAGCCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.43
Consensus pattern (21 bp):
TGTATCATAGTCCTCTATATA
Found at i:24333832 original size:18 final size:18
Alignment explanation
Indices: 24333798--24333835 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
24333788 TTTTTAAAAA
24333798 TTTAAATTATTAAATTTT
1 TTTAAATTATTAAATTTT
*
24333816 TTTAATATT-TTATATTTT
1 TTTAA-ATTATTAAATTTT
24333834 TT
1 TT
24333836 AAAAATATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTAAATTATTAAATTTT
Found at i:24333848 original size:21 final size:20
Alignment explanation
Indices: 24333819--24333857 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
24333809 AAATTTTTTT
*
24333819 AATATTTTATATTTTTTAAA
1 AATATTTTATAATTTTTAAA
24333839 AATATCTTTATAATTTTTA
1 AATAT-TTTATAATTTTTA
24333858 TGAAGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
AATATTTTATAATTTTTAAA
Found at i:24340466 original size:13 final size:13
Alignment explanation
Indices: 24340450--24340476 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24340440 TTTAAACCAA
24340450 ACTTTTCAAAAGT
1 ACTTTTCAAAAGT
24340463 ACTTTTCAAAAGT
1 ACTTTTCAAAAGT
24340476 A
1 A
24340477 ATGAAGAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (13 bp):
ACTTTTCAAAAGT
Found at i:24341005 original size:41 final size:39
Alignment explanation
Indices: 24340948--24341024 Score: 109
Period size: 41 Copynumber: 1.9 Consensus size: 39
24340938 TTATTAAGAA
*
24340948 TTATAAAAAATTATAAAAATCGTAAAAATATATATAAACTT
1 TTATAAAAAATTATAAAAATCATAAAAA-AT-TATAAACTT
**
24340989 TTATAAAATTTTATAAAAATCATAAAAAATTATAAA
1 TTATAAAAAATTATAAAAATCATAAAAAATTATAAA
24341025 ATGCATCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 6 0.18
40 2 0.06
41 25 0.76
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (39 bp):
TTATAAAAAATTATAAAAATCATAAAAAATTATAAACTT
Found at i:24341036 original size:19 final size:19
Alignment explanation
Indices: 24340950--24341025 Score: 71
Period size: 19 Copynumber: 3.8 Consensus size: 19
24340940 ATTAAGAATT
24340950 ATAAAAAATTATAAAAATC
1 ATAAAAAATTATAAAAATC
* ** *
24340969 GTAAAAATATATATAAACTTTT
1 ATAAAAA-AT-TATAAA-AATC
**
24340991 ATAAAATTTTATAAAAATC
1 ATAAAAAATTATAAAAATC
24341010 ATAAAAAATTATAAAA
1 ATAAAAAATTATAAAA
24341026 TGCATCAAAA
Statistics
Matches: 42, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
19 21 0.50
20 8 0.19
21 7 0.17
22 6 0.14
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (19 bp):
ATAAAAAATTATAAAAATC
Found at i:24341059 original size:13 final size:13
Alignment explanation
Indices: 24341041--24341066 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24341031 CAAAAAGGTC
24341041 CTTTAACCATTAA
1 CTTTAACCATTAA
24341054 CTTTAACCATTAA
1 CTTTAACCATTAA
24341067 TTATTAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (13 bp):
CTTTAACCATTAA
Found at i:24368102 original size:19 final size:20
Alignment explanation
Indices: 24368064--24368103 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
24368054 AATAAGGACT
*
24368064 AAACTGGAAACTTTTTCAAA
1 AAACTGGAAACTTTTGCAAA
24368084 AAACTGGAAA-TTTTGCAAA
1 AAACTGGAAACTTTTGCAAA
24368103 A
1 A
24368104 CAGGGGTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (20 bp):
AAACTGGAAACTTTTGCAAA
Found at i:24368631 original size:38 final size:38
Alignment explanation
Indices: 24368536--24368643 Score: 153
Period size: 38 Copynumber: 2.8 Consensus size: 38
24368526 AAAAATATGA
* * * *
24368536 ATCTCGTTATATTACCCGACAAATTACAACTAGGCTAG
1 ATCTCATTATATTACCCGAGAATTTACAACAAGGCTAG
*
24368574 ATCTTATTATATTACCCGAGAATTTACAACAAGGCTAG
1 ATCTCATTATATTACCCGAGAATTTACAACAAGGCTAG
* *
24368612 ATCTCATTATATTACCCGAGAATCTATAACAA
1 ATCTCATTATATTACCCGAGAATTTACAACAA
24368644 ATGGTAAATC
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (38 bp):
ATCTCATTATATTACCCGAGAATTTACAACAAGGCTAG
Found at i:24383310 original size:16 final size:16
Alignment explanation
Indices: 24383249--24383317 Score: 102
Period size: 16 Copynumber: 4.3 Consensus size: 16
24383239 TTGGTTCTCT
*
24383249 GTAATGGAATAGATGC
1 GTAATGGAATAGAGGC
*
24383265 GTAATGGAATAGAAGC
1 GTAATGGAATAGAGGC
24383281 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
* *
24383297 GTAATAGAATAGAGAC
1 GTAATGGAATAGAGGC
24383313 GTAAT
1 GTAAT
24383318 AGGTAATCCT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.42, C:0.06, G:0.30, T:0.22
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:24383356 original size:46 final size:44
Alignment explanation
Indices: 24383297--24383382 Score: 109
Period size: 46 Copynumber: 1.9 Consensus size: 44
24383287 GAATAGAGGC
*
24383297 GTAATAGAATAGAGACGTAATAGGTAATCCTTTTGTTTGGTTCGCT
1 GTAATAGAATAGAGACGTAATA-GT-ATCCTTGTGTTTGGTTCGCT
* ** *
24383343 GTAATGGAATAGAGGTGTAATAGTATTCTTGTGTTTGGTT
1 GTAATAGAATAGAGACGTAATAGTATCCTTGTGTTTGGTT
24383383 GAATGAAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 14 0.40
45 2 0.06
46 19 0.54
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (44 bp):
GTAATAGAATAGAGACGTAATAGTATCCTTGTGTTTGGTTCGCT
Found at i:24386294 original size:17 final size:18
Alignment explanation
Indices: 24386255--24386296 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
24386245 ATTGTTTCTC
*
24386255 AAAAGCACTTTTGAGACT
1 AAAAACACTTTTGAGACT
24386273 AAAAACACTTTTGAGA-T
1 AAAAACACTTTTGAGACT
24386290 AAAAACA
1 AAAAACA
24386297 TTGCTAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.50, C:0.14, G:0.12, T:0.24
Consensus pattern (18 bp):
AAAAACACTTTTGAGACT
Found at i:24393553 original size:20 final size:20
Alignment explanation
Indices: 24393525--24393640 Score: 54
Period size: 20 Copynumber: 5.7 Consensus size: 20
24393515 TTCATTATTG
*
24393525 TTTTGAATCAATTCTTTACT
1 TTTTAAATCAATTCTTTACT
* * * *
24393545 TTTTAAATCGATTGTATATT
1 TTTTAAATCAATTCTTTACT
* * *
24393565 GTTTTGACTCAATTCTTT-GT
1 -TTTTAAATCAATTCTTTACT
* * * *
24393585 TGTTTGAATCGATTCATTATT
1 T-TTTAAATCAATTCTTTACT
* *
24393606 GTTTTAAATCGATTCTTTTCT
1 -TTTTAAATCAATTCTTTACT
* *
24393627 GTTTAACTCAATTC
1 TTTTAAATCAATTC
24393641 AAACTCTAAC
Statistics
Matches: 70, Mismatches: 22, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
19 1 0.01
20 40 0.57
21 28 0.40
22 1 0.01
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.53
Consensus pattern (20 bp):
TTTTAAATCAATTCTTTACT
Found at i:24393620 original size:21 final size:21
Alignment explanation
Indices: 24393515--24393620 Score: 92
Period size: 21 Copynumber: 5.1 Consensus size: 21
24393505 CAATCTTAGT
*
24393515 TTCATTATTGTTTTGAATCAA
1 TTCATTATTGTTTTGAATCGA
* * *
24393536 TTCTTTACT-TTTTAAATCGA
1 TTCATTATTGTTTTGAATCGA
* * *
24393556 TT-GTATATTGTTTTGACTCAA
1 TTCAT-TATTGTTTTGAATCGA
* *
24393577 TTCTTTGTTG-TTTGAATCGA
1 TTCATTATTGTTTTGAATCGA
*
24393597 TTCATTATTGTTTTAAATCGA
1 TTCATTATTGTTTTGAATCGA
24393618 TTC
1 TTC
24393621 TTTTCTGTTT
Statistics
Matches: 65, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
19 1 0.02
20 30 0.46
21 33 0.51
22 1 0.02
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.54
Consensus pattern (21 bp):
TTCATTATTGTTTTGAATCGA
Found at i:24393641 original size:41 final size:40
Alignment explanation
Indices: 24393515--24393641 Score: 132
Period size: 41 Copynumber: 3.1 Consensus size: 40
24393505 CAATCTTAGT
* *
24393515 TTCATTATTGTTTTGAATCAATTCTTTACTTTTTAAATCGA
1 TTCATTATTGTTTTGAATCAATTCTTTTCTGTTT-AATCGA
* *
24393556 TT-GTATATTGTTTTGACTCAATTCTTTGT-TGTTTGAATCGA
1 TTCAT-TATTGTTTTGAATCAATTCTTT-TCTGTTT-AATCGA
* * *
24393597 TTCATTATTGTTTTAAATCGATTCTTTTCTGTTTAACTCAA
1 TTCATTATTGTTTTGAATCAATTCTTTTCTGTTTAA-TCGA
24393638 TTCA
1 TTCA
24393642 AACTCTAACA
Statistics
Matches: 71, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
40 4 0.06
41 66 0.93
42 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.10, T:0.54
Consensus pattern (40 bp):
TTCATTATTGTTTTGAATCAATTCTTTTCTGTTTAATCGA
Found at i:24396364 original size:18 final size:17
Alignment explanation
Indices: 24396329--24396366 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
24396319 CATTCTTTTA
24396329 ATACTTTTTGTTTTATT
1 ATACTTTTTGTTTTATT
24396346 ATACTTTATT-TTATTATT
1 ATACTTT-TTGTT-TTATT
24396364 ATA
1 ATA
24396367 TAATATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (17 bp):
ATACTTTTTGTTTTATT
Found at i:24397989 original size:76 final size:76
Alignment explanation
Indices: 24397908--24398056 Score: 271
Period size: 76 Copynumber: 2.0 Consensus size: 76
24397898 CAATGAGAGA
**
24397908 TAAAAAAATTGGTGAACCGTTAACCAATCCAATTTAGATAATATTGAATATTGAAATTTATATTT
1 TAAAAAAATTGGTGAACCACTAACCAATCCAATTTAGATAATATTGAATATTGAAATTTATATTT
24397973 ATATTTTTGAT
66 ATATTTTTGAT
*
24397984 TAAAAAAATTGGTGAACCACTAACCAATCCAATTTAGATAATATTGAATTTTGAAATTTATATTT
1 TAAAAAAATTGGTGAACCACTAACCAATCCAATTTAGATAATATTGAATATTGAAATTTATATTT
24398049 ATATTTTT
66 ATATTTTT
24398057 AAAAGCATTT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (76 bp):
TAAAAAAATTGGTGAACCACTAACCAATCCAATTTAGATAATATTGAATATTGAAATTTATATTT
ATATTTTTGAT
Found at i:24398122 original size:16 final size:17
Alignment explanation
Indices: 24398091--24398124 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
24398081 TTAAAGAGTC
*
24398091 TTTTATCTTTTTTAAAA
1 TTTTATCTTATTTAAAA
24398108 TTTTAT-TTATTTAAAA
1 TTTTATCTTATTTAAAA
24398124 T
1 T
24398125 AAAACAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTATCTTATTTAAAA
Found at i:24406475 original size:20 final size:20
Alignment explanation
Indices: 24406452--24406495 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
24406442 AATTTGATTA
* *
24406452 AAAATAAAAAATAGAAATAG
1 AAAATAAAAAATAAAAAAAG
* *
24406472 AAAATTAAAATTAAAAAAAG
1 AAAATAAAAAATAAAAAAAG
24406492 AAAA
1 AAAA
24406496 GAATATTACC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.16
Consensus pattern (20 bp):
AAAATAAAAAATAAAAAAAG
Found at i:24406478 original size:27 final size:25
Alignment explanation
Indices: 24406448--24406503 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 25
24406438 CTGAAATTTG
24406448 ATTAAAAATAAAAAATAGAAATAGAAA
1 ATTAAAAATAAAAAA-AGAAA-AGAAA
* *
24406475 ATTAAAATTAAAAAAAGAAAAGAAT
1 ATTAAAAATAAAAAAAGAAAAGAAA
24406500 ATTA
1 ATTA
24406504 CCTACATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 8 0.30
26 5 0.19
27 14 0.52
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (25 bp):
ATTAAAAATAAAAAAAGAAAAGAAA
Found at i:24406516 original size:34 final size:33
Alignment explanation
Indices: 24406478--24406553 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 33
24406468 ATAGAAAATT
*
24406478 AAAATTAAAAAAAGAAAAGAATATT-ACCTACATA
1 AAAATTAAAAAAAGAAAAAAAT-TTGA-CTACATA
* * *
24406512 AAAATTAGAAGAATAAAAAAATTTGACTACATA
1 AAAATTAAAAAAAGAAAAAAATTTGACTACATA
24406545 AAAA-TAAAA
1 AAAATTAAAA
24406554 CATGATTGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
32 4 0.11
33 13 0.36
34 19 0.53
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (33 bp):
AAAATTAAAAAAAGAAAAAAATTTGACTACATA
Found at i:24406595 original size:26 final size:27
Alignment explanation
Indices: 24406546--24406601 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
24406536 GACTACATAA
24406546 AAATAAAACATGATTGAAAGT-AAAAG
1 AAATAAAACATGATTGAAAGTAAAAAG
* *
24406572 AAATAAAAGATGATT-AAATTTAAAAAG
1 AAATAAAACATGATTGAAA-GTAAAAAG
24406599 AAA
1 AAA
24406602 AACTAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 3 0.12
26 15 0.58
27 8 0.31
ACGTcount: A:0.64, C:0.02, G:0.12, T:0.21
Consensus pattern (27 bp):
AAATAAAACATGATTGAAAGTAAAAAG
Found at i:24416316 original size:9 final size:9
Alignment explanation
Indices: 24416302--24416402 Score: 65
Period size: 9 Copynumber: 11.9 Consensus size: 9
24416292 TAAGTATAAA
24416302 TAAGTTATG
1 TAAGTTATG
24416311 TAAGTTA--
1 TAAGTTATG
*
24416318 T-ATTTATG
1 TAAGTTATG
24416326 T-A-TTATG
1 TAAGTTATG
**
24416333 TAAGTATAAA
1 TAAGT-TATG
24416343 TAAGTTATG
1 TAAGTTATG
24416352 TAAGTTATG
1 TAAGTTATG
* * *
24416361 ATATGATATA
1 -TAAGTTATG
*
24416371 T-ATTTATG
1 TAAGTTATG
24416379 T-A-TTATG
1 TAAGTTATG
24416386 TAAGTTATG
1 TAAGTTATG
24416395 TAAGTTAT
1 TAAGTTAT
24416403 ATTTATGTAA
Statistics
Matches: 72, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
6 4 0.06
7 13 0.18
8 9 0.12
9 33 0.46
10 13 0.18
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:24416337 original size:41 final size:42
Alignment explanation
Indices: 24416292--24416485 Score: 166
Period size: 41 Copynumber: 4.6 Consensus size: 42
24416282 TGTTTATTTA
24416292 TAAGTATAAATAAGTTATGTAAGTTATATTTATGTAT-TATG
1 TAAGTATAAATAAGTTATGTAAGTTATATTTATGTATATATG
*
24416333 TAAGTATAAATAAGTTATGTAAGTTATGA--TATGATATATATT
1 TAAGTATAAATAAGTTATGTAAGTTAT-ATTTATG-TATATATG
* ** * *
24416375 TATGTATTATGTAAGTTATGTAAGTTATATTTATGTA-AGATA
1 TAAGTA-TAAATAAGTTATGTAAGTTATATTTATGTATATATG
* ** * *
24416417 T-A-TTTATGTATGTTATGTAAGTTATATTTATGATATATATT
1 TAAGTATAAATAAGTTATGTAAGTTATATTTATG-TATATATG
* *
24416458 TATGTAAAATATGTAAGTTATGTAAGTT
1 TAAGTATAA-A--TAAGTTATGTAAGTT
24416486 TTTTTTTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 21
0.76 0.11 0.13
Matches are distributed among these distances:
39 27 0.22
40 7 0.06
41 34 0.28
42 14 0.11
43 23 0.19
44 4 0.03
46 14 0.11
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (42 bp):
TAAGTATAAATAAGTTATGTAAGTTATATTTATGTATATATG
Found at i:24416352 original size:19 final size:19
Alignment explanation
Indices: 24416292--24416356 Score: 76
Period size: 19 Copynumber: 3.3 Consensus size: 19
24416282 TGTTTATTTA
24416292 TAAGTATAAATAAGTTATG
1 TAAGTATAAATAAGTTATG
** *
24416311 TAAGTTATATTTATGTATTATG
1 TAAG-TATAAATAAG--TTATG
24416333 TAAGTATAAATAAGTTATG
1 TAAGTATAAATAAGTTATG
24416352 TAAGT
1 TAAGT
24416357 TATGATATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
19 14 0.38
20 7 0.19
21 7 0.19
22 9 0.24
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.43
Consensus pattern (19 bp):
TAAGTATAAATAAGTTATG
Found at i:24416407 original size:31 final size:34
Alignment explanation
Indices: 24416347--24416411 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
24416337 TATAAATAAG
*
24416347 TTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTATGATAAGATATATATTTATGTA
24416381 TTATGTAAGTTATG-TAAG-T-TATATTTATGTA
1 TTATGTAAGTTATGATAAGATATATATTTATGTA
24416412 AGATATATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 12 0.40
32 1 0.03
33 3 0.10
34 14 0.47
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (34 bp):
TTATGTAAGTTATGATAAGATATATATTTATGTA
Found at i:24416410 original size:15 final size:15
Alignment explanation
Indices: 24416390--24416432 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
24416380 ATTATGTAAG
24416390 TTATGTAAGTTATAT
1 TTATGTAAGTTATAT
*
24416405 TTATGTAAGATATAT
1 TTATGTAAGTTATAT
*
24416420 TTATGTATGTTAT
1 TTATGTAAGTTAT
24416433 GTAAGTTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (15 bp):
TTATGTAAGTTATAT
Found at i:24416435 original size:39 final size:37
Alignment explanation
Indices: 24416381--24416478 Score: 142
Period size: 39 Copynumber: 2.6 Consensus size: 37
24416371 TATTTATGTA
24416381 TTATGTAAGTTATGTAAGTTATATTTATGTAAGATATAT
1 TTATGTAAGTTATGTAAGTTATATTTATG--AGATATAT
* *
24416420 TTATGTATGTTATGTAAGTTATATTTATGATATATAT
1 TTATGTAAGTTATGTAAGTTATATTTATGAGATATAT
**
24416457 TTATGTAAAATATGTAAGTTAT
1 TTATGTAAGTTATGTAAGTTAT
24416479 GTAAGTTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
37 26 0.48
39 28 0.52
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (37 bp):
TTATGTAAGTTATGTAAGTTATATTTATGAGATATAT
Found at i:24418459 original size:15 final size:16
Alignment explanation
Indices: 24418439--24418495 Score: 64
Period size: 15 Copynumber: 3.6 Consensus size: 16
24418429 CTTTTATTAT
24418439 TTATTATTACTA-TTA
1 TTATTATTACTACTTA
*
24418454 TTATTATTATTACTTA
1 TTATTATTACTACTTA
*
24418470 -TATTATTGCTACTTA
1 TTATTATTACTACTTA
24418485 TCATATTATTA
1 T--TATTATTA
24418496 TATGATAGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
15 24 0.71
16 3 0.09
18 7 0.21
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.58
Consensus pattern (16 bp):
TTATTATTACTACTTA
Found at i:24418462 original size:18 final size:17
Alignment explanation
Indices: 24418431--24418476 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 17
24418421 ATTATCATCT
24418431 TTTATTATTTATTATTAC
1 TTTATTA-TTATTATTAC
24418449 TATTATTATTATTATTAC
1 T-TTATTATTATTATTAC
24418467 TTATATTATT
1 TT-TATTATT
24418477 GCTACTTATC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 1 0.04
18 19 0.73
19 6 0.23
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTATTATTATTATTAC
Found at i:24418496 original size:3 final size:3
Alignment explanation
Indices: 24418432--24418476 Score: 56
Period size: 3 Copynumber: 14.7 Consensus size: 3
24418422 TTATCATCTT
*
24418432 TTA TTA TTTA TTA TTA CTA TTA TTA TTA TTA TTA CTTA -TA TTA TT
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TT
24418477 GCTACTTATC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 29 0.78
4 6 0.16
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:24420990 original size:20 final size:20
Alignment explanation
Indices: 24420965--24421003 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
24420955 ATTTGGAAGG
24420965 GATTTGGAAAGGGAATTAGT
1 GATTTGGAAAGGGAATTAGT
24420985 GATTTGGAAAGGGAATTAG
1 GATTTGGAAAGGGAATTAG
24421004 GGGCTGGGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.28
Consensus pattern (20 bp):
GATTTGGAAAGGGAATTAGT
Found at i:24421450 original size:7 final size:7
Alignment explanation
Indices: 24421440--24421547 Score: 56
Period size: 7 Copynumber: 15.1 Consensus size: 7
24421430 AAACCCTAGA
24421440 CCTTAAC
1 CCTTAAC
*
24421447 CCTTAAA
1 CCTTAAC
24421454 CCTTAAAC
1 CCTT-AAC
*
24421462 CCTAAAC
1 CCTTAAC
* * *
24421469 TCATATC
1 CCTTAAC
*
24421476 CATTAAC
1 CCTTAAC
24421483 CCTTAAC
1 CCTTAAC
* *
24421490 ACTTAAA
1 CCTTAAC
24421497 CCTTAAAC
1 CCTT-AAC
24421505 CC-TAAC
1 CCTTAAC
24421511 CCTTGAAC
1 CCTT-AAC
* *
24421519 CATAAAC
1 CCTTAAC
* *
24421526 ACTAAAC
1 CCTTAAC
*
24421533 CCCTAAC
1 CCTTAAC
*
24421540 CCCTAAC
1 CCTTAAC
24421547 C
1 C
24421548 TCTAAATACT
Statistics
Matches: 74, Mismatches: 23, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
6 5 0.07
7 55 0.74
8 14 0.19
ACGTcount: A:0.38, C:0.38, G:0.01, T:0.23
Consensus pattern (7 bp):
CCTTAAC
Found at i:24421467 original size:14 final size:14
Alignment explanation
Indices: 24421414--24421749 Score: 96
Period size: 14 Copynumber: 23.6 Consensus size: 14
24421404 CATATCAATT
*
24421414 TTAAACCCTAGACC
1 TTAAACCCTAAACC
* *
24421428 CTAAACCCTAGACC
1 TTAAACCCTAAACC
24421442 TT-AACCCTTAAACC
1 TTAAACCC-TAAACC
24421456 TTAAACCCTAAA-C
1 TTAAACCCTAAACC
* * * *
24421469 TCATATCCATTAACCC
1 TTA-AACC-CTAAACC
*
24421485 TT-AACACTTAAACC
1 TTAAAC-CCTAAACC
*
24421499 TTAAACCCTAACCC
1 TTAAACCCTAAACC
* *
24421513 TTGAACCATAAACAC
1 TTAAACCCTAAAC-C
*
24421528 -TAAACCCCTAACCC
1 TTAAA-CCCTAAACC
* *
24421542 CT-AACCTCTAAATAC
1 TTAAACC-CTAAA-CC
* * * *
24421557 -TGAATCATAAAAC
1 TTAAACCCTAAACC
* * * **
24421570 ATGAGCTATAAACC
1 TTAAACCCTAAACC
* **
24421584 ATAAACCCCTATCCC
1 TTAAA-CCCTAAACC
* *
24421599 TTAACCCCTAACCC
1 TTAAACCCTAAACC
24421613 TT-AACACCTAAACC
1 TTAAAC-CCTAAACC
* *
24421627 TTAAACCCCAACCC
1 TTAAACCCTAAACC
*
24421641 TTAAACCATAAACC
1 TTAAACCCTAAACC
** * **
24421655 ACAAACCATAATGC
1 TTAAACCCTAAACC
24421669 TTAAACCCCT-AACC
1 TTAAA-CCCTAAACC
*
24421683 -TATATCCCTTAAACC
1 TTA-AACCC-TAAACC
*
24421698 TTAAACCCTAACCC
1 TTAAACCCTAAACC
* *
24421712 TTAAACCATAACCC
1 TTAAACCCTAAACC
* *
24421726 ATAAACCGCATAATCC
1 TTAAACC-C-TAAACC
24421742 TTAAACCC
1 TTAAACCC
24421750 CTAACCTCTA
Statistics
Matches: 239, Mismatches: 59, Indels: 47
0.69 0.17 0.14
Matches are distributed among these distances:
13 19 0.08
14 158 0.66
15 47 0.20
16 15 0.06
ACGTcount: A:0.40, C:0.36, G:0.02, T:0.22
Consensus pattern (14 bp):
TTAAACCCTAAACC
Found at i:24421510 original size:21 final size:21
Alignment explanation
Indices: 24421414--24421530 Score: 78
Period size: 21 Copynumber: 5.5 Consensus size: 21
24421404 CATATCAATT
*
24421414 TTAAACCCTAGAC-CCTAAACC
1 TTAAACCCTA-ACACTTAAACC
* * * *
24421435 CTAGACCTTAACCCTTAAACC
1 TTAAACCCTAACACTTAAACC
* *
24421456 TTAAACCCTAA-ACTCATATCC
1 TTAAACCCTAACACTTA-AACC
24421477 ATT-AACCCTTAACACTTAAACC
1 -TTAAACCC-TAACACTTAAACC
* *
24421499 TTAAACCCTAACCCTTGAACC
1 TTAAACCCTAACACTTAAACC
* *
24421520 ATAAACACTAA
1 TTAAACCCTAA
24421531 ACCCCTAACC
Statistics
Matches: 74, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
20 5 0.07
21 52 0.70
22 13 0.18
23 4 0.05
ACGTcount: A:0.39, C:0.34, G:0.03, T:0.24
Consensus pattern (21 bp):
TTAAACCCTAACACTTAAACC
Found at i:24421631 original size:7 final size:7
Alignment explanation
Indices: 24421597--24421732 Score: 51
Period size: 7 Copynumber: 19.3 Consensus size: 7
24421587 AACCCCTATC
*
24421597 CCTTAAC
1 CCTTAAA
* *
24421604 CCCTAAC
1 CCTTAAA
24421611 CCTTAACA
1 CCTTAA-A
24421619 CC-TAAA
1 CCTTAAA
24421625 CCTTAAA
1 CCTTAAA
** *
24421632 CCCCAAC
1 CCTTAAA
24421639 CCTTAAA
1 CCTTAAA
*
24421646 CCATAAA
1 CCTTAAA
**
24421653 CCACAAA
1 CCTTAAA
* *
24421660 CCATAAT
1 CCTTAAA
*
24421667 GCTTAAA
1 CCTTAAA
*
24421674 CCCCT-AA
1 -CCTTAAA
**
24421681 CCTATATC
1 CCT-TAAA
24421689 CCTTAAA
1 CCTTAAA
24421696 CCTTAAA
1 CCTTAAA
* *
24421703 CCCTAAC
1 CCTTAAA
24421710 CCTTAAA
1 CCTTAAA
* *
24421717 CCATAAC
1 CCTTAAA
*
24421724 CCATAAA
1 CCTTAAA
24421731 CC
1 CC
24421733 GCATAATCCT
Statistics
Matches: 94, Mismatches: 30, Indels: 10
0.70 0.22 0.07
Matches are distributed among these distances:
6 5 0.05
7 82 0.87
8 7 0.07
ACGTcount: A:0.40, C:0.39, G:0.01, T:0.21
Consensus pattern (7 bp):
CCTTAAA
Found at i:24421654 original size:71 final size:73
Alignment explanation
Indices: 24421577--24421760 Score: 236
Period size: 71 Copynumber: 2.5 Consensus size: 73
24421567 AACATGAGCT
*
24421577 ATAAACCATAAACCCCT-ATCCCTT-AACCCCTAACCCT-TAACACC-TAAACCTTAAACCCCAA
1 ATAAACCATAAACCCATAAT-CCTTAAACCCCTAACCCTATAAC-CCTTAAACCTTAAACCCCAA
24421638 CCCTTAAACC
64 CCCTTAAACC
* * * *
24421648 ATAAACCACAAA-CCATAATGCTTAAACCCCTAA-CCTATATCCCTTAAACCTTAAACCCTAACC
1 ATAAACCATAAACCCATAATCCTTAAACCCCTAACCCTATAACCCTTAAACCTTAAACCCCAACC
24421711 CTTAAACC
66 CTTAAACC
*
24421719 ATAACCCATAAACCGCATAATCCTTAAACCCCTAACCTCTAT
1 ATAAACCATAAACC-CATAATCCTTAAACCCCTAACC-CTAT
24421761 CATCTAAACC
Statistics
Matches: 97, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
70 11 0.11
71 61 0.63
72 1 0.01
73 19 0.20
74 1 0.01
75 4 0.04
ACGTcount: A:0.39, C:0.38, G:0.01, T:0.22
Consensus pattern (73 bp):
ATAAACCATAAACCCATAATCCTTAAACCCCTAACCCTATAACCCTTAAACCTTAAACCCCAACC
CTTAAACC
Found at i:24421714 original size:21 final size:21
Alignment explanation
Indices: 24421688--24421755 Score: 66
Period size: 21 Copynumber: 3.1 Consensus size: 21
24421678 TAACCTATAT
24421688 CCCTTAAACCTTAAACCCTAA
1 CCCTTAAACCTTAAACCCTAA
*
24421709 CCCTTAAACCAT-AACCCATAAA
1 CCCTTAAACCTTAAACCC-T-AA
* *
24421731 CCGCATAATCCTTAAACCCCTAA
1 CC-CTTAAACCTTAAA-CCCTAA
24421754 CC
1 CC
24421756 TCTATCATCT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 5 0.13
21 12 0.32
22 4 0.11
23 11 0.29
24 3 0.08
25 3 0.08
ACGTcount: A:0.38, C:0.40, G:0.01, T:0.21
Consensus pattern (21 bp):
CCCTTAAACCTTAAACCCTAA
Found at i:24421782 original size:14 final size:14
Alignment explanation
Indices: 24421765--24421803 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
24421755 CTCTATCATC
*
24421765 TAAACCCTAAATTA
1 TAAACCATAAATTA
*
24421779 TAAAACATAAATTA
1 TAAACCATAAATTA
*
24421793 TAAACCTTAAA
1 TAAACCATAAA
24421804 CCTCAACCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.28
Consensus pattern (14 bp):
TAAACCATAAATTA
Found at i:24421824 original size:7 final size:7
Alignment explanation
Indices: 24421814--24421844 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
24421804 CCTCAACCCT
24421814 TAAACAA
1 TAAACAA
24421821 TAAACAA
1 TAAACAA
24421828 TAAACAA
1 TAAACAA
*
24421835 TAAACCA
1 TAAACAA
24421842 TAA
1 TAA
24421845 TCCCTAAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAACAA
Found at i:24422104 original size:40 final size:40
Alignment explanation
Indices: 24422039--24422169 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
24422029 CTTTTTTGCG
** * *
24422039 GCGCCGCTAATGCTTGACCTATAGCGGCGTTT-TACAAAAA
1 GCGCCGCTAATGCTCAATCTTTAGCGGCGTTTCT-CAAAAA
* *
24422079 GCGCCGCTAATGCTCAATCTTTAGCGACGTTTCTCAACAA
1 GCGCCGCTAATGCTCAATCTTTAGCGGCGTTTCTCAAAAA
* * *
24422119 GCGCCGCTAATGCTCAATCTTTTGCGGCGTTTGTTAAAAA
1 GCGCCGCTAATGCTCAATCTTTAGCGGCGTTTCTCAAAAA
* *
24422159 TCGCCGTTAAT
1 GCGCCGCTAAT
24422170 TCCAGTAAAG
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
40 76 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (40 bp):
GCGCCGCTAATGCTCAATCTTTAGCGGCGTTTCTCAAAAA
Found at i:24424407 original size:20 final size:18
Alignment explanation
Indices: 24424362--24424410 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 18
24424352 AGTGATTTAA
*
24424362 TATAATATATATTATTTT
1 TATAACATATATTATTTT
24424380 TATTTAACATATAATTAATTTT
1 TA--TAACATAT-ATT-ATTTT
24424402 TATAACATA
1 TATAACATA
24424411 ATATATTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 2 0.08
20 14 0.54
21 3 0.12
22 7 0.27
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (18 bp):
TATAACATATATTATTTT
Found at i:24425090 original size:30 final size:30
Alignment explanation
Indices: 24425054--24425116 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
24425044 ACTTATTTTA
24425054 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
24425084 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
24425114 TTG
1 TTG
24425117 CTTGTCAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:24427076 original size:90 final size:90
Alignment explanation
Indices: 24426795--24427064 Score: 292
Period size: 90 Copynumber: 3.0 Consensus size: 90
24426785 CACACCGAGT
* * * * * * ** * *
24426795 TGTGGATGAATCACCAAATGTTGCAAGTTAATACGTTGCAAGATGCTTGTGAATACACAACATAA
1 TGTGAATGAACCACCAAA-ATTGCAAGTGAATACGCTACCGGATGATTGTGAGTACACAACATAA
*
24426860 TTGTAGATAATAACT-TCAGAATAATA
65 TTGTAGATAATAGCTGTCAG-ATAATA
* * * *
24426886 TGTGAATGAACCACTAAAATTGCAAGTTAATGCGCTACCGGATGATTGTGAGTACACAATATAAT
1 TGTGAATGAACCACCAAAATTGCAAGTGAATACGCTACCGGATGATTGTGAGTACACAACATAAT
* *
24426951 TGTAGATAATAGCTGCCGGATAATA
66 TGTAGATAATAGCTGTCAGATAATA
* * ** *
24426976 TGTGAATGAACCACCAAAATTGCAGGTGAATACGGTGTCGGATGGTTGTGAGTACACAACATAAT
1 TGTGAATGAACCACCAAAATTGCAAGTGAATACGCTACCGGATGATTGTGAGTACACAACATAAT
*
24427041 T-TCAGATAATAGCTGTAAGATAAT
66 TGT-AGATAATAGCTGTCAGATAAT
24427065 TTATAGATGA
Statistics
Matches: 150, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
89 1 0.01
90 132 0.88
91 17 0.11
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (90 bp):
TGTGAATGAACCACCAAAATTGCAAGTGAATACGCTACCGGATGATTGTGAGTACACAACATAAT
TGTAGATAATAGCTGTCAGATAATA
Found at i:24428892 original size:159 final size:158
Alignment explanation
Indices: 24428692--24429011 Score: 595
Period size: 159 Copynumber: 2.0 Consensus size: 158
24428682 AACTATAGAA
24428692 TGTTGGTAGTATAGGGACTATTTTAGGACTCTATAAATTTGGTTGAGAAGAGATTTAATTTAATG
1 TGTTGGTAGTATAGGGACTATTTTAGGACTCTATAAATTTGGTTGAGAAGAGATTTAATTTAATG
24428757 AGGTTAATTGCTTGAATATTGAAGTATGGACTAAATTAAATGAAATTAAATTGTTGGGGGGTAAA
66 AGGTTAATTGCTTGAATATTGAAGTATGGACTAAATTAAATGAAATTAAATTGTTGGGGGGTAAA
24428822 TGTGTGAAATGATAATTATAAGATGAAT
131 TGTGTGAAATGATAATTATAAGATGAAT
*
24428850 TGTTGGGTAGTATAGGGACTGTTTTAGGACTCTATAAATTTGGTTGAGAAGAGATTTAATTTAAT
1 TGTT-GGTAGTATAGGGACTATTTTAGGACTCTATAAATTTGGTTGAGAAGAGATTTAATTTAAT
* * *
24428915 GATGTTAATTGCTTGAATATTGAAGTATGGACTAAGTTGAATGAAATTAAATTGTTGGGGGGTAA
65 GAGGTTAATTGCTTGAATATTGAAGTATGGACTAAATTAAATGAAATTAAATTGTTGGGGGGTAA
24428980 ATGTGTGAAATGATAATTATAAGATGAAT
130 ATGTGTGAAATGATAATTATAAGATGAAT
24429009 TGT
1 TGT
24429012 CGAGTTAAAC
Statistics
Matches: 157, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
158 4 0.03
159 153 0.97
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.37
Consensus pattern (158 bp):
TGTTGGTAGTATAGGGACTATTTTAGGACTCTATAAATTTGGTTGAGAAGAGATTTAATTTAATG
AGGTTAATTGCTTGAATATTGAAGTATGGACTAAATTAAATGAAATTAAATTGTTGGGGGGTAAA
TGTGTGAAATGATAATTATAAGATGAAT
Found at i:24430387 original size:17 final size:19
Alignment explanation
Indices: 24430351--24430387 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
24430341 AATATACAAG
*
24430351 AAAACTTAGAATATAAATA
1 AAAACTTAGAATAAAAATA
24430370 AAAACTTA-AA-AAAAATA
1 AAAACTTAGAATAAAAATA
24430387 A
1 A
24430388 TAAAATAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 7 0.41
18 2 0.12
19 8 0.47
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.22
Consensus pattern (19 bp):
AAAACTTAGAATAAAAATA
Found at i:24431927 original size:18 final size:18
Alignment explanation
Indices: 24431900--24431934 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24431890 GGTTTTAGTC
*
24431900 TGCTCTACTGCAACTTCT
1 TGCTCCACTGCAACTTCT
*
24431918 TGCTCCACTGCGACTTC
1 TGCTCCACTGCAACTTC
24431935 AGGGAGATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.37, G:0.14, T:0.34
Consensus pattern (18 bp):
TGCTCCACTGCAACTTCT
Found at i:24432383 original size:128 final size:131
Alignment explanation
Indices: 24432118--24432418 Score: 378
Period size: 128 Copynumber: 2.3 Consensus size: 131
24432108 CTTCAATCTG
* * *
24432118 CTCCACTGCAACTTCAGGGAAATAAGATTGGTATC-TTCACATTCTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTTTCACATTCTCCACTGCAACTTCAGAGAG
** * *
24432182 ATAAGGTTTGTTATGGTGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
66 ATAAGACTTG-TA--GTGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGATTTTAA
*
24432247 TCCG
128 TCCA
* **
24432251 CTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTC-GTTTACTCCACTGCAACTTCAGAGA
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTTTCACATT-CTCCACTGCAACTTCAGAGA
* ** * *
24432315 GATGAGACTTG-A-TGCGATCTGCTCTACTACTGCTT-AGGGAGATAAGATCTGTGGTTTTAATC
65 GATAAGACTTGTAGTGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGATTTTAATC
24432377 CA
130 CA
*
24432379 CTCCACTGCAACTTCAGGGAGATAAGATTGATTTCTTTCA
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTTTCA
24432419 AATTGACTGC
Statistics
Matches: 147, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
128 63 0.43
129 19 0.13
132 1 0.01
133 34 0.23
134 30 0.20
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (131 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTTTCACATTCTCCACTGCAACTTCAGAGAG
ATAAGACTTGTAGTGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCC
A
Found at i:24432402 original size:44 final size:43
Alignment explanation
Indices: 24432064--24432408 Score: 213
Period size: 44 Copynumber: 7.9 Consensus size: 43
24432054 AGATTCATCA
* * * *
24432064 TTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTAGTAG
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GTGG
* * *
24432108 CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGA-T-TGG
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTGG
*
24432149 TATCTTCACAT-T-CTCCACTGCAACTTCAGGGAGATAAGGTTTGTTATGG
1 T-T-TT-A-ATCTGCTCCACTGCAACTTCAGGGAGATAA-GATTG---TGG
* * * * *
24432198 -TGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGA
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTGG
* * *
24432241 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTG-GTT
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTG-G
** * * * * *
24432284 TCTTTCGTTTACTCCACTGCAACTTCAGAGAGATGAGACT-T-G
1 T-TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTGG
* *** * * **
24432326 ATGCGATCTGCTCTACTACTGCTT-AGGGAGATAAGATCTGTGG
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTGG
**
24432369 TTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGATTG
1 TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTG
24432409 ATTTCTTTCA
Statistics
Matches: 222, Mismatches: 58, Indels: 43
0.69 0.18 0.13
Matches are distributed among these distances:
40 10 0.05
41 16 0.07
42 3 0.01
43 48 0.22
44 109 0.49
45 6 0.03
46 26 0.12
47 1 0.00
49 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (43 bp):
TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTGG
Found at i:24432709 original size:100 final size:100
Alignment explanation
Indices: 24432426--24433624 Score: 1612
Period size: 100 Copynumber: 12.1 Consensus size: 100
24432416 TCAAATTGAC
* * * ** * *
24432426 TGCAACGTCGGAGAA-CAAGATTCGCTGTTGTAGCTTTAATCTATTCCACTGTATCGCCAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
24432490 GTAAGATTCGCCGTTGCGGCTTCAATC-TTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * *
24432524 TGCAATGTCGGGGAA-CAAGATTCGCCGTTATAGCTTCAATCTGATCCACTGCATTAG-CA-GAG
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCA-TCGCCATG-G
*
24432586 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAAT
64 AAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * *
24432623 TGCAATGTCGGGGAAGCAAGATCCGCTGTTGTAGCTTTAATCTGCTCCATTGTATCACCATGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
*
24432688 GTAAGATTCGCTGTTGCGGCTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * * * *
24432723 TGCAATGTCGGGGAAGCGAGATTTGCCTTTATAGCTTCAATCTGTTCCACTGCACCGCC-TGGGA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCAT-GGA
*
24432787 AGTAAGATTCGCCGTTGTGGCTTCAATC-TTTTAAT
65 AGTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * *
24432822 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCATCACCAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
*
24432887 GTAAGATTCGCCGTTACGGCTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * *
24432922 TGGAATGTCGTGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCATGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
* *
24432987 GTAAGATTCACTGTTGCGGCTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * ** *
24433022 TGCAATGTCGGGGAAGCGAGATTCGCCTTTATAGCTTCAATCTATTCCACTGCACCGCC-TGGGA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCAT-GGA
*
24433086 AGTAAGATTCGCCGTTGTGGCTTCAATC-TTTTAAT
65 AGTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* *
24433121 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGAAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
* *
24433186 GTAAGATTCACTGTTGCGGCTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* *
24433221 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGTATCGCCATGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
24433286 GTAAGATTCGCCGTTGCGGCTTCAATC-TTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * * * *
24433320 TGCAATATCGGGGAAGCGAGATTCGCCTTTATAGCTTCAATCTGTTCCACTGCACCGCC-TGGGA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCAT-GGA
* *
24433384 AGTAAGATTCGCCGTTGTGGCATCAATC-TTTTAAT
65 AGTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * *
24433419 TGCAATGTCGGGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATAGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
* *
24433484 GTAAGATTCGTCGTTGCGACTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * *
24433519 TGCAATGTCGAGGAAGCAAGATTCGCCGTCGTAGCTTTAATATGCTCCACTGCATCGCCATGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
*** * * *
24433584 GTAAGATTCGTTATTGCAGTTTCAATCTTTTAAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
24433619 TGCAAT
1 TGCAAT
24433625 CTTAGAGGTA
Statistics
Matches: 964, Mismatches: 122, Indels: 28
0.87 0.11 0.03
Matches are distributed among these distances:
97 1 0.00
98 77 0.08
99 367 0.38
100 518 0.54
101 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (100 bp):
TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
Found at i:24433006 original size:299 final size:299
Alignment explanation
Indices: 24432426--24433624 Score: 1877
Period size: 299 Copynumber: 4.0 Consensus size: 299
24432416 TCAAATTGAC
* * * * * * * *
24432426 TGCAACGTCGGAGAA-CAAGATTCG-CTGTTGTAGCTTTAATCTATTCCACTGTATCGCCAGGGA
1 TGCAATGTCGGGGAAGCGAGATTCGCCT-TTATAGCTTCAATCTATTCCACTGCACCGCCTGGGA
* *
24432489 AGTAAGATTCGCCGTTGCGGCTTCAATCTTTTAATTGCAATGTCGGGGAA-CAAGATTCGCCGTT
65 AGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTT
* * * * * *
24432553 ATAGCTTCAATCTGATCCACTGCATTAGCAGAGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
130 GTAGCTTTAATCTGCTCCACTGCATCACCAGAGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTT
* * * * *
24432618 TTAATTGCAATGTCGGGGAAGCAAGATCCGCTGTTGTAGCTTTAATCTGCTCCATTGTATCACCA
195 TTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCA
24432683 TGGAAGTAAGATTCGCTGTTGCGGCTTCAATCTTTTTAAT
260 TGGAAGTAAGATTCGCTGTTGCGGCTTCAATCTTTTTAAT
* *
24432723 TGCAATGTCGGGGAAGCGAGATTTGCCTTTATAGCTTCAATCTGTTCCACTGCACCGCCTGGGAA
1 TGCAATGTCGGGGAAGCGAGATTCGCCTTTATAGCTTCAATCTATTCCACTGCACCGCCTGGGAA
24432788 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTG
66 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTG
* *
24432853 TAGCTTTAATCTGCTCCACTGCATCACCAGGGAAGTAAGATTCGCCGTTACGGCTTCAATCTTTT
131 TAGCTTTAATCTGCTCCACTGCATCACCAGAGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTT
* * * *
24432918 TAATTGGAATGTCGTGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCAT
196 TAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCAT
*
24432983 GGAAGTAAGATTCACTGTTGCGGCTTCAATCTTTTTAAT
261 GGAAGTAAGATTCGCTGTTGCGGCTTCAATCTTTTTAAT
24433022 TGCAATGTCGGGGAAGCGAGATTCGCCTTTATAGCTTCAATCTATTCCACTGCACCGCCTGGGAA
1 TGCAATGTCGGGGAAGCGAGATTCGCCTTTATAGCTTCAATCTATTCCACTGCACCGCCTGGGAA
24433087 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTG
66 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTG
* * *
24433152 TAGCTTTAATCTGCTCCACTGCATCGCCATGA-AAGTAAGATTCACTGTTGCGGCTTCAATCTTT
131 TAGCTTTAATCTGCTCCACTGCATCACCA-GAGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTT
* *
24433216 TTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGTATCGCCA
195 TTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCA
*
24433281 TGGAAGTAAGATTCGCCGTTGCGGCTTCAATC-TTTTAAT
260 TGGAAGTAAGATTCGCTGTTGCGGCTTCAATCTTTTTAAT
* *
24433320 TGCAATATCGGGGAAGCGAGATTCGCCTTTATAGCTTCAATCTGTTCCACTGCACCGCCTGGGAA
1 TGCAATGTCGGGGAAGCGAGATTCGCCTTTATAGCTTCAATCTATTCCACTGCACCGCCTGGGAA
* *
24433385 GTAAGATTCGCCGTTGTGGCATCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACTGTTG
66 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTG
* * * *
24433450 TAGCTTTAATCTGCTCCACTGCATCGCCATAGAAGTAAGATTCGTCGTTGCGACTTCAATCTTTT
131 TAGCTTTAATCTGCTCCACTGCATCACCAGAGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTT
* * *
24433515 TAATTGCAATGTCGAGGAAGCAAGATTCGCCGTCGTAGCTTTAATATGCTCCACTGCATCGCCAT
196 TAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCAT
* * * * *
24433580 GGAAGTAAGATTCGTTATTGCAGTTTCAATCTTTTAAAT
261 GGAAGTAAGATTCGCTGTTGCGGCTTCAATCTTTTTAAT
24433619 TGCAAT
1 TGCAAT
24433625 CTTAGAGGTA
Statistics
Matches: 831, Mismatches: 65, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
297 14 0.02
298 363 0.44
299 453 0.55
300 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (299 bp):
TGCAATGTCGGGGAAGCGAGATTCGCCTTTATAGCTTCAATCTATTCCACTGCACCGCCTGGGAA
GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTG
TAGCTTTAATCTGCTCCACTGCATCACCAGAGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTT
TAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCAT
GGAAGTAAGATTCGCTGTTGCGGCTTCAATCTTTTTAAT
Found at i:24433584 original size:50 final size:50
Alignment explanation
Indices: 24432833--24433593 Score: 206
Period size: 50 Copynumber: 15.3 Consensus size: 50
24432823 GCAATGTCGG
* * * *
24432833 GGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCATCACCAG
1 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAT
* * ** ** * * * *
24432883 GGAAGTAAGATTCGCCGT--TACGGCTTCAATCTTTTTAATTGGAAT-GTCGT
1 GGAAGCAAGATTCGCCGTCGTA--GCTTTAATCTGCTCCACT-GCATCGCCAT
* * *
24432933 GGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCAT
1 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAT
* * * * ** * ** ** * * **
24432983 GGAAGTAAGATTCACTGTTGCGGCTTCAATCTTTTTAATTGCAAT-GTCGG
1 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGC-ATCGCCAT
* * ** * ** *
24433033 GGAAGCGAGATTCGCCTTTATAGCTTCAATCTATTCCACTGCACCGCC-T
1 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAT
* * * * * ** * * **
24433082 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTTAATTGCAAT-GTCGG
1 -GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGC-ATCGCCAT
* *
24433132 GGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCAT
1 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAT
* * * * * ** * ** ** * * **
24433182 GAAAGTAAGATTCACTGTTGCGGCTTCAATCTTTTTAATTGCAAT-GTCGG
1 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGC-ATCGCCAT
* * *
24433232 GGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGTATCGCCAT
1 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAT
* * ** * * ** * ** **
24433282 GGAAGTAAGATTCGCCGTTGCGGCTTCAATCT-TTTAATTGCAAT-ATCGG
1 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGC-ATCGCCAT
* * ** * * *
24433331 GGAAGCGAGATTCGCCTTTATAGCTTCAATCTGTTCCACTGCACCGCC-T
1 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAT
* * * * * * ** * * **
24433380 GGGAAGTAAGATTCGCCGTTGTGGCATCAATCT-TTTAATTGCAAT-GTCGG
1 -GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGC-ATCGCCAT
* * *
24433430 GGAAGCAAGATTCACTGTTGTAGCTTTAATCTGCTCCACTGCATCGCCAT
1 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAT
* * * * ** ** * *
24433480 AGAAGTAAGATTCGTCGTTGCG-A-CTTCAATCTTTTTAATTGCAAT-GTCGA-
1 GGAAGCAAGATTCGCCG-T-CGTAGCTTTAATCTGCTCCACTGC-ATCG-CCAT
*
24433530 GGAAGCAAGATTCGCCGTCGTAGCTTTAATATGCTCCACTGCATCGCCAT
1 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAT
*
24433580 GGAAGTAAGATTCG
1 GGAAGCAAGATTCG
24433594 TTATTGCAGT
Statistics
Matches: 500, Mismatches: 180, Indels: 62
0.67 0.24 0.08
Matches are distributed among these distances:
48 4 0.01
49 118 0.24
50 363 0.73
51 12 0.02
52 3 0.01
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (50 bp):
GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAT
Found at i:24433611 original size:199 final size:199
Alignment explanation
Indices: 24432426--24433624 Score: 1608
Period size: 199 Copynumber: 6.0 Consensus size: 199
24432416 TCAAATTGAC
* * ** * *
24432426 TGCAACGTCGGAGAA-CAAGATTCGCTGTTGTAGCTTTAATCTATTCCACTGTATCGCCAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
24432490 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTAATTGCAATGTCGGGGAA-CAAGATTCGCCGTTA
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTA
* ** *
24432554 TAGCTTCAATCTGATCCACTGCATTAG-CA-GAGAAGTAAGATTCGCCGTTGTGGCTTCAATCTT
131 TAGCTTCAATCTGCTCCACTGCA-CCGCCATG-GAAGTAAGATTCGCCGTTGCGGCTTCAATCTT
24432617 TTTAAT
194 TTTAAT
* * * *
24432623 TGCAATGTCGGGGAAGCAAGATCCGCTGTTGTAGCTTTAATCTGCTCCATTGTATCACCATGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
* * * *
24432688 GTAAGATTCGCTGTTGCGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCGAGATTTGCCTTT
66 GTAAGATTCGCCGTTGCGGCTTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTT
* *
24432753 ATAGCTTCAATCTGTTCCACTGCACCGCC-TGGGAAGTAAGATTCGCCGTTGTGGCTTCAATC-T
130 ATAGCTTCAATCTGCTCCACTGCACCGCCAT-GGAAGTAAGATTCGCCGTTGCGGCTTCAATCTT
24432816 TTTAAT
194 TTTAAT
* * * *
24432822 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCATCACCAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
* * * *
24432887 GTAAGATTCGCCGTTACGGCTTCAATCTTTTTAATTGGAATGTCGTGGAAGCAAGATTCACCGTT
66 GTAAGATTCGCCGTTGCGGCTTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTT
* * * *
24432952 GTAGCTTTAATCTGCTCCACTGCACCGCCATGGAAGTAAGATTCACTGTTGCGGCTTCAATCTTT
130 ATAGCTTCAATCTGCTCCACTGCACCGCCATGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTT
24433017 TTAAT
195 TTAAT
* * * ** *
24433022 TGCAATGTCGGGGAAGCGAGATTCGCCT-TTATAGCTTCAATCTATTCCACTGCACCGCC-TGGG
1 TGCAATGTCGGGGAAGCAAGATTCG-CTGTTGTAGCTTTAATCTGCTCCACTGCATCGCCAT-GG
* *
24433085 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGT
64 AAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGT
* * * * * *
24433150 TGTAGCTTTAATCTGCTCCACTGCATCGCCATGAAAGTAAGATTCACTGTTGCGGCTTCAATCTT
129 TATAGCTTCAATCTGCTCCACTGCACCGCCATGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTT
24433215 TTTAAT
194 TTTAAT
* * *
24433221 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGTATCGCCATGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
* * *
24433286 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTAATTGCAATATCGGGGAAGCGAGATTCGCCTTTA
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTA
* * *
24433351 TAGCTTCAATCTGTTCCACTGCACCGCC-TGGGAAGTAAGATTCGCCGTTGTGGCATCAATC-TT
131 TAGCTTCAATCTGCTCCACTGCACCGCCAT-GGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTT
24433414 TTAAT
195 TTAAT
* *
24433419 TGCAATGTCGGGGAAGCAAGATTCACTGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATAGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
* * * *
24433484 GTAAGATTCGTCGTTGCGACTTCAATCTTTTTAATTGCAATGTCGAGGAAGCAAGATTCGCCGTC
66 GTAAGATTCGCCGTTGCGGCTTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTT
* * * * *** * *
24433549 GTAGCTTTAATATGCTCCACTGCATCGCCATGGAAGTAAGATTCGTTATTGCAGTTTCAATCTTT
130 ATAGCTTCAATCTGCTCCACTGCACCGCCATGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTT
*
24433614 TAAAT
195 TTAAT
24433619 TGCAAT
1 TGCAAT
24433625 CTTAGAGGTA
Statistics
Matches: 887, Mismatches: 99, Indels: 29
0.87 0.10 0.03
Matches are distributed among these distances:
197 13 0.01
198 163 0.18
199 545 0.61
200 164 0.18
201 2 0.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (199 bp):
TGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
GTAAGATTCGCCGTTGCGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTA
TAGCTTCAATCTGCTCCACTGCACCGCCATGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTT
TAAT
Found at i:24434900 original size:17 final size:16
Alignment explanation
Indices: 24434874--24434907 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
24434864 TTGGCCTCTC
*
24434874 CTTTTTTTTTCATTTTT
1 CTTTTCTTTTC-TTTTT
24434891 CTTTTCTTTTCTTTTT
1 CTTTTCTTTTCTTTTT
24434907 C
1 C
24434908 AAGTGAAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (16 bp):
CTTTTCTTTTCTTTTT
Found at i:24440564 original size:456 final size:455
Alignment explanation
Indices: 24439708--24440621 Score: 1722
Period size: 456 Copynumber: 2.0 Consensus size: 455
24439698 GAAAGTTTAA
* * * *
24439708 AAGGGTATTTGGCCATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTTG
1 AAGGATATTTGGCCATTTGGTCGAACGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCG
24439773 AATTTTCCAAACGCAAAATATTGCCTTAATTTAAAACTTTTCCCCTTTTGAATAATTGCGAGTAC
66 AATTTTCCAAACGCAAAATATTGCCTTAATTTAAAACTTTTCCCCTTTTGAATAATTGCGAGTAC
24439838 AATACTCGAACGAGATGCATTTGTTTTATTTAGGACAAAATACAATGATTTATTATTGGGGTGTA
131 AATACTCGAACGAGATGCATTTGTTTTATTTAGGACAAAATACAATGATTTATTATTGGGGTGTA
24439903 CAAAATCGAGCGTAACTTTGAAGTGATGAAATGAAATTGAATGATAACGGAACATGGCATAACAA
196 CAAAATCGAGCGTAACTTTGAAGTGATGAAATGAAATTGAATGATAACGGAACATGGCATAACAA
24439968 TTTATAAATAAAATGATACATCAATGCATGACAAATATACAAGGATACAAATAAGCAAATTATAG
261 TTTATAAATAAAATGATACATCAATGCATGACAAATATACAAGGATACAAATAAGCAAATTATAG
24440033 TACGCACAACGGCAATGAACACACAACATATCTAATTTAAATACCAACATTACTAACCAAAGGAA
326 TACGCACAACGGCAATGAACACACAACATATCTAATTTAAATACCAACATTACTAACCAAAGGAA
24440098 AATAAAACAAATATATATATATAACAATCAAAAGTAAATAATAACTTAACATGAA-ATTAATAAG
391 AATAAAACAAATATATATATATAACAATCAAAAGTAAATAATAACTTAACATGAAGATTAATAAG
*
24440162 AAGGATATTTGGCTATTTGGTCGAACGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCG
1 AAGGATATTTGGCCATTTGGTCGAACGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCG
* *
24440227 AATTTTCCAAACGCGAAATATTGCCTTAATTTAAAACTTTTCCCTTTTTTTGAATAATTGCGAGT
66 AATTTTCCAAACGCAAAATATTGCCTTAATTTAAAACTTTTCCC--CTTTTGAATAATTGCGAGT
*
24440292 ACAATATTCGAACGAGATGCATTTGTTTTATTTAGGACAAAATACAATGATTTATTATTGGGGTG
129 ACAATACTCGAACGAGATGCATTTGTTTTATTTAGGACAAAATACAATGATTTATTATTGGGGTG
24440357 TACAAAATCGAGCGTAACTTTGAAGTGATGAAATGAAATTGAATGATAACGGAACATGGCATAAC
194 TACAAAATCGAGCGTAACTTTGAAGTGATGAAATGAAATTGAATGATAACGGAACATGGCATAAC
24440422 AATTTATAAATAAAATGATACATCAATGCATGACAAATATACAAGGATACAAATAAGCAAATTAT
259 AATTTATAAATAAAATGATACATCAATGCATGACAAATATACAAGGATACAAATAAGCAAATTAT
24440487 AGTACGCACAACGGCAATGAACACACAACATATCTAATTTAAATACCAACATTACTAACCAAAGG
324 AGTACGCACAACGGCAATGAACACACAACATATCTAATTTAAATACCAACATTACTAACCAAAGG
24440552 AAAATAAAACAAATATATATATATAACAATCAAAAGTAAATAATAACTTAACATGAATGATTAAT
389 AAAATAAAACAAATATATATATATAACAATCAAAAGTAAATAATAACTTAACATGAA-GATTAAT
24440617 AAG
453 AAG
24440620 AA
1 AA
24440622 CAATACATAA
Statistics
Matches: 448, Mismatches: 8, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
454 103 0.23
456 334 0.75
458 11 0.02
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.28
Consensus pattern (455 bp):
AAGGATATTTGGCCATTTGGTCGAACGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCG
AATTTTCCAAACGCAAAATATTGCCTTAATTTAAAACTTTTCCCCTTTTGAATAATTGCGAGTAC
AATACTCGAACGAGATGCATTTGTTTTATTTAGGACAAAATACAATGATTTATTATTGGGGTGTA
CAAAATCGAGCGTAACTTTGAAGTGATGAAATGAAATTGAATGATAACGGAACATGGCATAACAA
TTTATAAATAAAATGATACATCAATGCATGACAAATATACAAGGATACAAATAAGCAAATTATAG
TACGCACAACGGCAATGAACACACAACATATCTAATTTAAATACCAACATTACTAACCAAAGGAA
AATAAAACAAATATATATATATAACAATCAAAAGTAAATAATAACTTAACATGAAGATTAATAAG
Found at i:24443633 original size:40 final size:40
Alignment explanation
Indices: 24443526--24443681 Score: 143
Period size: 36 Copynumber: 4.1 Consensus size: 40
24443516 AATTACGTAA
* * *
24443526 ACACATTTGATATTTTC-AGTTTATCCGACTAGCGCTAGGC
1 ACACATTTGACATTGTCGA-TTTATCCGACTAGTGCTAGGC
*
24443566 ACA-A-TT--CATTGTCGGTTTATCCGACTAGTGCTAGGC
1 ACACATTTGACATTGTCGATTTATCCGACTAGTGCTAGGC
**
24443602 ACACATTTGACATTGTCGATTTATCTAACTAGTGCT-GGC
1 ACACATTTGACATTGTCGATTTATCCGACTAGTGCTAGGC
* **
24443641 -CGCA--AAACATTGTCGATTTATCCGACTAGTG-TAGGGC
1 ACACATTTGACATTGTCGATTTATCCGACTAGTGCTA-GGC
24443678 ACAC
1 ACAC
24443682 CTATCATCGG
Statistics
Matches: 95, Mismatches: 13, Indels: 18
0.75 0.10 0.14
Matches are distributed among these distances:
35 1 0.01
36 51 0.54
37 4 0.04
38 9 0.09
39 4 0.04
40 26 0.27
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (40 bp):
ACACATTTGACATTGTCGATTTATCCGACTAGTGCTAGGC
Found at i:24443702 original size:35 final size:35
Alignment explanation
Indices: 24443652--24443767 Score: 115
Period size: 35 Copynumber: 3.3 Consensus size: 35
24443642 GCAAAACATT
*
24443652 GTCGATTTATCCGACTAGTGTAGGGCACACCTATC
1 GTCGGTTTATCCGACTAGTGTAGGGCACACCTATC
* * * * * ** *
24443687 ATCGGTTTATTCGACTAGCGTTGGGCGCAAAATATT
1 GTCGGTTTATCCGACTAGTGTAGGGCAC-ACCTATC
* * *
24443723 GTCAGTTTATCCAACTAGTGCAGGGCACACCTATC
1 GTCGGTTTATCCGACTAGTGTAGGGCACACCTATC
24443758 GTCGGTTTAT
1 GTCGGTTTAT
24443768 TTGACTAACG
Statistics
Matches: 59, Mismatches: 21, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
35 35 0.59
36 24 0.41
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (35 bp):
GTCGGTTTATCCGACTAGTGTAGGGCACACCTATC
Found at i:24443732 original size:71 final size:71
Alignment explanation
Indices: 24443641--24443805 Score: 215
Period size: 71 Copynumber: 2.3 Consensus size: 71
24443631 TAGTGCTGGC
* * *
24443641 CGCAAAACATTGTCGATTTATCCGACTAGTGTAGGGCACACCTATCATCGGTTTATTCGACTAGC
1 CGCAAAACATTGTCGATTTATCCAACTAGTGCAGGGCACACCTATCATCGGTTTATTCGACTAAC
* *
24443706 GTTGGG
66 GCTAGG
* * *
24443712 CGCAAAATATTGTC-AGTTTATCCAACTAGTGCAGGGCACACCTATCGTCGGTTTATTTGACTAA
1 CGCAAAACATTGTCGA-TTTATCCAACTAGTGCAGGGCACACCTATCATCGGTTTATTCGACTAA
24443776 CGCTAGG
65 CGCTAGG
*
24443783 CGCAAAACTTTGTTACGATTTAT
1 CGCAAAACATTG-T-CGATTTAT
24443806 TCGTCAGGTA
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
70 1 0.01
71 71 0.89
72 1 0.01
73 6 0.08
74 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (71 bp):
CGCAAAACATTGTCGATTTATCCAACTAGTGCAGGGCACACCTATCATCGGTTTATTCGACTAAC
GCTAGG
Found at i:24448391 original size:16 final size:16
Alignment explanation
Indices: 24448370--24448411 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
24448360 TTATTAAATT
*
24448370 ATATATTTTAATTATA
1 ATATATTTTAATAATA
24448386 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
24448401 AT-TATGTTTAA
1 ATATAT-TTTAA
24448412 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:24448396 original size:15 final size:15
Alignment explanation
Indices: 24448361--24448402 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
24448351 TTAAGAATTT
*
24448361 TATTAAATTAT-ATA
1 TATTTAATTATAATA
24448375 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
24448389 TATTTAATAATAAT
1 TATTTAATTATAAT
24448403 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:24452929 original size:5 final size:5
Alignment explanation
Indices: 24452921--24452946 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
24452911 ATATCATCTC
24452921 TAATT TAATT TAATT TAATT TAATT T
1 TAATT TAATT TAATT TAATT TAATT T
24452947 TTATTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TAATT
Found at i:24453333 original size:33 final size:33
Alignment explanation
Indices: 24453291--24453365 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
24453281 AATTAAAATT
24453291 AAAATTAAAA-AA-GAAAATAATATT-ACTTACATA
1 AAAATTAAAAGAATGAAAA-AA-ATTAAC-TACATA
*
24453324 AAAATTAAAAGAATTAAAAAAATTAACTACATA
1 AAAATTAAAAGAATGAAAAAAATTAACTACATA
24453357 AAAA-TAAAA
1 AAAATTAAAA
24453366 CACGATTTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
32 5 0.13
33 23 0.61
34 6 0.16
35 4 0.11
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.24
Consensus pattern (33 bp):
AAAATTAAAAGAATGAAAAAAATTAACTACATA
Found at i:24459006 original size:11 final size:11
Alignment explanation
Indices: 24458990--24459023 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
24458980 GGTGAGATTA
24458990 GATACTGTAGC
1 GATACTGTAGC
24459001 GATACTGTAGC
1 GATACTGTAGC
24459012 GATACTGTAGC
1 GATACTGTAGC
24459023 G
1 G
24459024 TGAGACAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (11 bp):
GATACTGTAGC
Found at i:24461903 original size:51 final size:51
Alignment explanation
Indices: 24461846--24462049 Score: 399
Period size: 51 Copynumber: 4.0 Consensus size: 51
24461836 TATCCACTAA
*
24461846 ATAAAAAAGCAAAACCATTATATTGTTTATGTAATTAAATAATATTGTACT
1 ATAAAAAAACAAAACCATTATATTGTTTATGTAATTAAATAATATTGTACT
24461897 ATAAAAAAACAAAACCATTATATTGTTTATGTAATTAAATAATATTGTACT
1 ATAAAAAAACAAAACCATTATATTGTTTATGTAATTAAATAATATTGTACT
24461948 ATAAAAAAACAAAACCATTATATTGTTTATGTAATTAAATAATATTGTACT
1 ATAAAAAAACAAAACCATTATATTGTTTATGTAATTAAATAATATTGTACT
24461999 ATAAAAAAACAAAACCATTATATTGTTTATGTAATTAAATAATATTGTACT
1 ATAAAAAAACAAAACCATTATATTGTTTATGTAATTAAATAATATTGTACT
24462050 TTGTCAACTA
Statistics
Matches: 152, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
51 152 1.00
ACGTcount: A:0.49, C:0.08, G:0.06, T:0.37
Consensus pattern (51 bp):
ATAAAAAAACAAAACCATTATATTGTTTATGTAATTAAATAATATTGTACT
Found at i:24462504 original size:21 final size:21
Alignment explanation
Indices: 24462478--24462531 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
24462468 TCTTAATTTG
24462478 ATTTTTTTAATAAAATTTA-TA
1 ATTTTTTTAAT-AAATTTAGTA
24462499 ATTTTTTATAATAAATTTAGTA
1 ATTTTTT-TAATAAATTTAGTA
**
24462521 ACATTTTTAAT
1 ATTTTTTTAAT
24462532 TTAATTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
ATTTTTTTAATAAATTTAGTA
Found at i:24462710 original size:21 final size:21
Alignment explanation
Indices: 24462684--24462737 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
24462674 TCTTAATTTG
24462684 ATTTTTTTAATAAAATTTA-TA
1 ATTTTTTTAAT-AAATTTAGTA
24462705 ATTTTTTATAATAAATTTAGTA
1 ATTTTTT-TAATAAATTTAGTA
**
24462727 ACATTTTTAAT
1 ATTTTTTTAAT
24462738 TTAATTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
ATTTTTTTAATAAATTTAGTA
Found at i:24462746 original size:206 final size:206
Alignment explanation
Indices: 24462386--24462799 Score: 803
Period size: 206 Copynumber: 2.0 Consensus size: 206
24462376 AATTGTCATT
*
24462386 TACTTGATTGGTACAGCACAATAATTGAAGGGTGAAAGTGCAAAGAAAATTGATTTGATGAATTT
1 TACTTCATTGGTACAGCACAATAATTGAAGGGTGAAAGTGCAAAGAAAATTGATTTGATGAATTT
24462451 GTGTTTCCCCCAAGTTTTCTTAATTTGATTTTTTTAATAAAATTTATAATTTTTTATAATAAATT
66 GTGTTTCCCCCAAGTTTTCTTAATTTGATTTTTTTAATAAAATTTATAATTTTTTATAATAAATT
24462516 TAGTAACATTTTTAATTTAATTTAATAAATTAATATAAAGTAGTACATA-ATGTTAATTTTGGTA
131 TAGTAACATTTTTAATTTAATTTAATAAATTAATATAAAGTAGTACATAGATGTTAA-TTTGGTA
24462580 AAATAATTATAA
195 AAATAATTATAA
24462592 TACTTCATTGGTACAGCACAATAATTGAAGGGTGAAAGTGCAAAGAAAATTGATTTGATGAATTT
1 TACTTCATTGGTACAGCACAATAATTGAAGGGTGAAAGTGCAAAGAAAATTGATTTGATGAATTT
24462657 GTGTTTCCCCCAAGTTTTCTTAATTTGATTTTTTTAATAAAATTTATAATTTTTTATAATAAATT
66 GTGTTTCCCCCAAGTTTTCTTAATTTGATTTTTTTAATAAAATTTATAATTTTTTATAATAAATT
24462722 TAGTAACATTTTTAATTTAATTTAATAAATTAATATAAAGTAGTACATAGATGTTAATTTGGTAA
131 TAGTAACATTTTTAATTTAATTTAATAAATTAATATAAAGTAGTACATAGATGTTAATTTGGTAA
24462787 AATAATTATAA
196 AATAATTATAA
24462798 TA
1 TA
24462800 TTTAATACAA
Statistics
Matches: 206, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
206 199 0.97
207 7 0.03
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.43
Consensus pattern (206 bp):
TACTTCATTGGTACAGCACAATAATTGAAGGGTGAAAGTGCAAAGAAAATTGATTTGATGAATTT
GTGTTTCCCCCAAGTTTTCTTAATTTGATTTTTTTAATAAAATTTATAATTTTTTATAATAAATT
TAGTAACATTTTTAATTTAATTTAATAAATTAATATAAAGTAGTACATAGATGTTAATTTGGTAA
AATAATTATAA
Found at i:24462825 original size:16 final size:16
Alignment explanation
Indices: 24462806--24462839 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
24462796 AATATTTAAT
24462806 ACAAATTGAGTGTTTA
1 ACAAATTGAGTGTTTA
24462822 ACAAATTGAGTGTTTA
1 ACAAATTGAGTGTTTA
24462838 AC
1 AC
24462840 TTATTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (16 bp):
ACAAATTGAGTGTTTA
Found at i:24466097 original size:237 final size:236
Alignment explanation
Indices: 24465598--24466225 Score: 812
Period size: 237 Copynumber: 2.7 Consensus size: 236
24465588 CGTCTTACCT
* ** * * * * * *
24465598 CATTGCAACTTCAAGGAGATAAGATTTGCTGTTGTAGTTTC-ATTTCAACCATTGCAAT-TTCAA
1 CATTGCATCTTCGTGGAGATGAGATTTGCTATTGTAGTTTCAATCTGATCTATTGC-ATCTTCAA
* * *
24465661 GAGTATA-GGATTTGCAGCTTCATCTTGCTCCACTACAATTTTAGGGAGATAAGATTCGCTATTG
65 G-G-ATACGGATTTGTAGCTTTATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTG
* * *
24465725 TAGCTTCATTTCAACCTACTGCTACTTCAGGGGGACTAGAATTGTTGCTTTATCTGTTTCACTGC
128 TAGCTTCATTCCAACCTACTGCAACTTCAGGGGGACTAGAATTGCTGCTTTATCTGTTTCACTGC
* * *
24465790 AGCTTCAAGAAAACCAGATTTAATGTTGTAGCTTTATCTTGCCC
193 AACTTCAAGAAAACCAGATTTAATATTGTAGCTTTATCTTGCAC
* *
24465834 CATTGTATCTTCGTAGAGATGAGATTTGCTATTGTAGTTTCAATCTGATCTATTGCATCTTCAAG
1 CATTGCATCTTCGTGGAGATGAGATTTGCTATTGTAGTTTCAATCTGATCTATTGCATCTTCAAG
* * * *
24465899 GATACGAGATTTGTAACTTTATCTTGCTCTACTACAACTTTAGTGAGATAAGATTCGTTATTGTA
66 GATACG-GATTTGTAGCTTTATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTGTA
* * *
24465964 GCTTCATTCCAACCTACTGCAACTTCAGGGGGATTGGAATTGCTGCTTTATCTGTTTCATTGCAA
130 GCTTCATTCCAACCTACTGCAACTTCAGGGGGACTAGAATTGCTGCTTTATCTGTTTCACTGCAA
* *
24466029 CTTTAAGAAAACTAGATTTAATATTGTAGCTTTATCTTGCAC
195 CTTCAAGAAAACCAGATTTAATATTGTAGCTTTATCTTGCAC
* * * * ** *
24466071 TATTGCGTCTTCGTGGAGATGAGATTTGCTATTGTAGTTTCAACCTGATCTACTATATCTTCAGG
1 CATTGCATCTTCGTGGAGATGAGATTTGCTATTGTAGTTTCAATCTGATCTATTGCATCTTCAAG
* *
24466136 GATACGGGATTTGTAGCTTTATCTTGCTCCACTGCAACTTTAGGGAGACAAGATTCGCTATTGTA
66 GATAC-GGATTTGTAGCTTTATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTGTA
* * * *
24466201 ACTTCACTCCAACCCAATGCAACTT
130 GCTTCATTCCAACCTACTGCAACTT
24466226 TAAGGGTATA
Statistics
Matches: 339, Mismatches: 48, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
235 3 0.01
236 38 0.11
237 297 0.88
238 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (236 bp):
CATTGCATCTTCGTGGAGATGAGATTTGCTATTGTAGTTTCAATCTGATCTATTGCATCTTCAAG
GATACGGATTTGTAGCTTTATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTGTAG
CTTCATTCCAACCTACTGCAACTTCAGGGGGACTAGAATTGCTGCTTTATCTGTTTCACTGCAAC
TTCAAGAAAACCAGATTTAATATTGTAGCTTTATCTTGCAC
Found at i:24466242 original size:94 final size:93
Alignment explanation
Indices: 24466143--24466753 Score: 285
Period size: 94 Copynumber: 6.6 Consensus size: 93
24466133 AGGGATACGG
* * *
24466143 GATTTGTAGCTTTATCTTGCTCCACTGCAACTTTAGGGAGACAAGATTCGCTATTGTAACTTCAC
1 GATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTGTAACTTCAC
24466208 TCCAACCCAATGCAACTTTAAGGGTATA
66 TCCAACCCAATGCAACTTTAAGGGTATA
* * * * * *
24466236 GTATTTGTAGCTTCATCTTGCTCTATTGCAACTTTAGGGAGATAAGATTGCTGCT-TTATCTATT
1 G-ATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATT-C-GCTATTGT-AACT
* * * * * *
24466300 TCACTGCAACTTCAA-GAAAAC---CA-GATTTA
62 TCACTCCAAC-CCAATG-CAACTTTAAGGGTATA
* * * * *
24466329 -ATGTTGTAGCTTTATCTTGC-CTCACTACAACTTTAGGGAGATAAGATTTGCCATTGTAGCTTT
1 GAT-TTGTAGCTTCATCTTGCTC-CACTACAACTTTAGGGAGATAAGATTCGCTATTGTAACTTC
* * * * *
24466392 ATTCCAACCCACTACAGCTTTAGGGGTATA
64 ACTCCAACCCAATGCAACTTTAAGGGTATA
* * *
24466422 GGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAAGGAGATAATATT-GCTACTT-TATCCAT
1 -GATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTA-TTGTA---AC
* ** * ** *
24466485 TTCACTGCAACTTTAA-GAAAACCAT-A---TTTA
61 TTCACTCCAAC-CCAATG-CAACTTTAAGGGTATA
* * * * * ** * *
24466515 -ATGTTGTAACTTTATCTTGC-CCTACTACAAATTCAGAGAGATAAGATTTTCCATTGTAGCTGT
1 GAT-TTGTAGCTTCATCTTGCTCC-ACTACAACTTTAGGGAGATAAGATTCGCTATTGTAACT-T
* * ** *
24466578 -ATTCCAACCCATTATAAATTTAAGGGTATA
63 CACTCCAACCCAATGCAACTTTAAGGGTATA
* * ** * ** *
24466608 GGATTTATAACTTCATCTTGCTTTACTGC-A-TTTCAGGGAGATAAGATTCATTATTGTAGCTTC
1 -GATTTGTAGCTTCATCTTGCTCCACTACAACTTT-AGGGAGATAAGATTCGCTATTGTAACTTC
* * * * *
24466671 ATTCCAACCGACTACAA-TTTCAGGGGTATAA
64 ACTCCAACCCAATGCAACTTT-AAGGGTAT-A
* * *
24466702 GATTTGTAGCTTCATCTTACTCCACTGCAACTTTAAGGAGATAAGATT-GCTA
1 GATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTA
24466754 CTTTATCCAT
Statistics
Matches: 377, Mismatches: 99, Indels: 84
0.67 0.18 0.15
Matches are distributed among these distances:
89 8 0.02
90 18 0.05
91 11 0.03
92 82 0.22
93 93 0.25
94 120 0.32
95 12 0.03
96 23 0.06
97 10 0.03
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (93 bp):
GATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATTGTAACTTCAC
TCCAACCCAATGCAACTTTAAGGGTATA
Found at i:24466361 original size:92 final size:92
Alignment explanation
Indices: 24466240--24466562 Score: 257
Period size: 92 Copynumber: 3.5 Consensus size: 92
24466230 GGTATAGTAT
* *
24466240 TTGTAGCTTCATCTTGCTCTATTGCAACTTTAGGGAGATAAGATTGCTGCTTTATCTATTTCACT
1 TTGTAGCTTCATCTTGCTCTACTACAACTTTAGGGAGATAAGATTGCTGCTTTATCTATTTCACT
24466305 GCAACTTCAAGAAAACCAGATTTAATG
66 GCAACTTCAAGAAAACCAGATTTAATG
* *
24466332 TTGTAGCTTTATCTTGC-CTCACTACAACTTTAGGGAGATAAGATT--TGCCATTGTAGCTTTAT
1 TTGTAGCTTCATCTTGCTCT-ACTACAACTTTAGGGAGATAAGATTGCTG-C-TT-TA--TCTAT
* * * *** ** * *
24466394 TCCAAC--CCACTAC-AGCTTTA-GGGGTATAGGAT-
60 TTC-ACTGCAACTTCAAG-AAAACCAGATTTA--ATG
* * * * *
24466426 TTGTAGCTTCATCTTGCTCCACTACAACTTTAAGGAGATAATATTGCTACTTTATCCATTTCACT
1 TTGTAGCTTCATCTTGCTCTACTACAACTTTAGGGAGATAAGATTGCTGCTTTATCTATTTCACT
* *
24466491 GCAACTTTAAGAAAACCATATTTAATG
66 GCAACTTCAAGAAAACCAGATTTAATG
* * * * * *
24466518 TTGTAACTTTATCTTGCCCTACTACAAATTCAGAGAGATAAGATT
1 TTGTAGCTTCATCTTGCTCTACTACAACTTTAGGGAGATAAGATT
24466563 TTCCATTGTA
Statistics
Matches: 171, Mismatches: 42, Indels: 36
0.69 0.17 0.14
Matches are distributed among these distances:
90 4 0.02
91 10 0.06
92 82 0.48
93 15 0.09
94 47 0.27
95 10 0.06
96 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (92 bp):
TTGTAGCTTCATCTTGCTCTACTACAACTTTAGGGAGATAAGATTGCTGCTTTATCTATTTCACT
GCAACTTCAAGAAAACCAGATTTAATG
Found at i:24466362 original size:186 final size:185
Alignment explanation
Indices: 24466146--24466655 Score: 659
Period size: 186 Copynumber: 2.7 Consensus size: 185
24466136 GATACGGGAT
* * * * * *
24466146 TTGTAGCTTTATCTTG-CTCCACTGCAACTTTAGGGAGACAAGATTCGCTATTGTAACTTCACTC
1 TTGTAGCTTTATCTTGCCT-CACTACAACTTTAGGGAGATAAGATTTGCCATTGTAGCTT-ATTC
* * *
24466210 CAACCCAATGCAACTTTAAGGGTATAGTATTTGTAGCTTCATCTTGCTCTATTGCAACTTTAGGG
64 CAACCCAATACAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTTAGGG
* *
24466275 AGATAAGATTGCTGCTTTATCTATTTCACTGCAACTTCAAGAAAACCAGATTTAATG
129 AGATAAGATTGCTACTTTATCCATTTCACTGCAACTTCAAGAAAACCAGATTTAATG
24466332 TTGTAGCTTTATCTTGCCTCACTACAACTTTAGGGAGATAAGATTTGCCATTGTAGCTTTATTCC
1 TTGTAGCTTTATCTTGCCTCACTACAACTTTAGGGAGATAAGATTTGCCATTGTAGC-TTATTCC
* * * * * *
24466397 AACCCACTACAGCTTTAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAAGGA
65 AACCCAATACAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTTAGGGA
* * *
24466462 GATAATATTGCTACTTTATCCATTTCACTGCAACTTTAAGAAAACCATATTTAATG
130 GATAAGATTGCTACTTTATCCATTTCACTGCAACTTCAAGAAAACCAGATTTAATG
* * * * *
24466518 TTGTAACTTTATCTTGCC-CTACTACAAATTCAGAGAGATAAGATTTTCCATTGTAGCTGTATTC
1 TTGTAGCTTTATCTTGCCTC-ACTACAACTTTAGGGAGATAAGATTTGCCATTGTAGCT-TATTC
* * * * * *
24466582 CAACCCATTATAAATTTAAGGGTATAGGATTTATAACTTCATCTTGCTTTACTGC-A-TTTCAGG
64 CAACCCAATACAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTT-AGG
24466645 GAGATAAGATT
128 GAGATAAGATT
24466656 CATTATTGTA
Statistics
Matches: 282, Mismatches: 37, Indels: 11
0.85 0.11 0.03
Matches are distributed among these distances:
184 3 0.01
185 15 0.05
186 260 0.92
187 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (185 bp):
TTGTAGCTTTATCTTGCCTCACTACAACTTTAGGGAGATAAGATTTGCCATTGTAGCTTATTCCA
ACCCAATACAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTTAGGGAG
ATAAGATTGCTACTTTATCCATTTCACTGCAACTTCAAGAAAACCAGATTTAATG
Found at i:24466729 original size:93 final size:94
Alignment explanation
Indices: 24466546--24466749 Score: 213
Period size: 93 Copynumber: 2.2 Consensus size: 94
24466536 CTACTACAAA
* * *
24466546 TTCAGAGAGATAAGATTTTCCATTGTAGCTGTATTCCAACCCATTATAAATTTAAGGGTATAGGA
1 TTCAGGGAGATAAGATTTT-CATTGTAGCTGTATTCCAACCCACTATAAATTTAAGGGTATAAGA
* **
24466611 TTTATAACTTCATCTTGCTTTACTGC-A-T
65 TTTATAACTTCATCTTACTCCACTGCAACT
* * *
24466639 TTCAGGGAGATAAGATTCATT-ATTGTAGCT-TCATTCCAACCGACTA-CAATTTCAGGGGTATA
1 TTCAGGGAGATAAGATT--TTCATTGTAGCTGT-ATTCCAACCCACTATAAATTT-AAGGGTATA
* *
24466701 AGATTTGTAGCTTCATCTTACTCCACTGCAACT
62 AGATTTATAACTTCATCTTACTCCACTGCAACT
*
24466734 TT-AAGGAGATAAGATT
1 TTCAGGGAGATAAGATT
24466750 GCTACTTTAT
Statistics
Matches: 93, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
92 6 0.06
93 68 0.73
94 14 0.15
95 5 0.05
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (94 bp):
TTCAGGGAGATAAGATTTTCATTGTAGCTGTATTCCAACCCACTATAAATTTAAGGGTATAAGAT
TTATAACTTCATCTTACTCCACTGCAACT
Found at i:24466908 original size:279 final size:280
Alignment explanation
Indices: 24466332--24466973 Score: 704
Period size: 279 Copynumber: 2.3 Consensus size: 280
24466322 AGATTTAATG
* * * *
24466332 TTGTAGCTTTATCTTGCCTCACTACAACTTTAGGGAGATAAGATTTGCCATTGTAGCTTTATTCC
1 TTGTAGCTTTATCTTGCTTCACTGCAACTTTAGGGAGATAAGATTCGCCATTGTAGCTTCATTCC
* * *
24466397 AACCCACTACAGCTTT-AGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAAGG
66 AACCCACTACA-ATTTCAGGGGTATAAGATTTGTAGCTTCATCTTACTCCACTACAACTTTAAGG
* * * * *
24466461 AGATAATATTGCTACTTTATCCATTTCACTGCAACTTTAAGAAAACCATATTTAATGTTGTAACT
130 AGATAAGATTGCTACTTTATCCATTTCACTGCAACTTCAAGAAAACCAGATTTAAGGTCGTAACT
* * * * *
24466526 TTATCTTGCCCTACTACAAATTCAGAGAGATAAGATTTTCCATTGTAGCTGTATTCCAACCCATT
195 TAATCTTGCCCTACTACAAATTCAGAGAGATAAGATTTGCCACTGTAGCTGTAATCCAACCCACT
* *
24466591 ATAAATTTAAGGGTATAGGAT
260 ATAAACTTAAGGGTATAAGAT
* * * * ***
24466612 TTATAACTTCATCTTGCTTTACTGC-A-TTTCAGGGAGATAAGATTCATTATTGTAGCTTCATTC
1 TTGTAGCTTTATCTTGCTTCACTGCAACTTT-AGGGAGATAAGATTCGCCATTGTAGCTTCATTC
* *
24466675 CAACCGACTACAATTTCAGGGGTATAAGATTTGTAGCTTCATCTTACTCCACTGCAACTTTAAGG
65 CAACCCACTACAATTTCAGGGGTATAAGATTTGTAGCTTCATCTTACTCCACTACAACTTTAAGG
* * * * *
24466740 AGATAAGATTGCTACTTTATCCATTTCACTGCAACTTCAGGAAGA-TAGGATTTGAGGTCGTAGC
130 AGATAAGATTGCTACTTTATCCATTTCACTGCAACTTCAAGAAAACCA-GATTTAAGGTCGTAAC
** ** * * * * * **
24466804 TTAATCTTGCTCC-ACTGTATCTTTAGAGAGATGAGATTTGCTACTGTAG-TTTCAATCTATGCC
194 TTAATCTTGC-CCTACTACAAATTCAGAGAGATAAGATTTGCCACTGTAGCTGT-AATCCAACCC
* *
24466867 ACTA-CAACTTCAGGGATATAAGAT
257 ACTATAAACTTAAGGG-TATAAGAT
* * * * * *
24466891 TTGTAGCTTTGTCTTGCTCCACTGCAACTTTAGAGAGATAAAACTCGCCATTGTAGCTTCATTCT
1 TTGTAGCTTTATCTTGCTTCACTGCAACTTTAGGGAGATAAGATTCGCCATTGTAGCTTCATTCC
*
24466956 AACCTACTACAATTTCAG
66 AACCCACTACAATTTCAG
24466974 AGAGACTAGA
Statistics
Matches: 294, Mismatches: 60, Indels: 16
0.79 0.16 0.04
Matches are distributed among these distances:
278 17 0.06
279 208 0.71
280 66 0.22
281 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (280 bp):
TTGTAGCTTTATCTTGCTTCACTGCAACTTTAGGGAGATAAGATTCGCCATTGTAGCTTCATTCC
AACCCACTACAATTTCAGGGGTATAAGATTTGTAGCTTCATCTTACTCCACTACAACTTTAAGGA
GATAAGATTGCTACTTTATCCATTTCACTGCAACTTCAAGAAAACCAGATTTAAGGTCGTAACTT
AATCTTGCCCTACTACAAATTCAGAGAGATAAGATTTGCCACTGTAGCTGTAATCCAACCCACTA
TAAACTTAAGGGTATAAGAT
Found at i:24466946 original size:94 final size:94
Alignment explanation
Indices: 24466799--24466973 Score: 208
Period size: 94 Copynumber: 1.9 Consensus size: 94
24466789 ATTTGAGGTC
* * * * * * * *
24466799 GTAGCTTAATCTTGCTCCACTGTATCTTTAGAGAGATGAGATTTGCTACTGTAGTTTCAATCTAT
1 GTAGCTTAATCTTGCTCCACTGCAACTTTAGAGAGATAAAACTCGCCACTGTAGCTTCAATCTA-
*
24466864 GCC-ACTACAACTTCAGGGATATAAGATTT
65 ACCTACTACAACTTCAGGGATATAAGATTT
** * *
24466893 GTAGCTTTGTCTTGCTCCACTGCAACTTTAGAGAGATAAAACTCGCCATTGTAGCTTCATTCTAA
1 GTAGCTTAATCTTGCTCCACTGCAACTTTAGAGAGATAAAACTCGCCACTGTAGCTTCAATCTAA
*
24466958 CCTACTACAATTTCAG
66 CCTACTACAACTTCAG
24466974 AGAGACTAGA
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
93 2 0.03
94 64 0.97
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (94 bp):
GTAGCTTAATCTTGCTCCACTGCAACTTTAGAGAGATAAAACTCGCCACTGTAGCTTCAATCTAA
CCTACTACAACTTCAGGGATATAAGATTT
Found at i:24475729 original size:229 final size:230
Alignment explanation
Indices: 24475327--24475788 Score: 764
Period size: 229 Copynumber: 2.0 Consensus size: 230
24475317 CTTTACCATT
* * *
24475327 CTATGTTCGATTGGAAATCAATATTTGGGCAAAGCTTTATGCGATTTGGGAGCTAGCATCAATCT
1 CTATGTTCGATTGGAAATCAATATTTGGGAAAAGCTTTATGCGAATTGGGAGCTAGAATCAATCT
* *
24475392 CATGCCATTATCTACTTTTAGAAAGTTGGGAATTGGTTATATGAAACCCATTACAGTGACATTAC
66 CATGCCACTATCTACTTTTAGAAAGTTGGGAATTGGTCATATGAAACCCATTACAGTGACATTAC
*
24475457 AACTTGCAGATCGATCTTTAGCTCAACTTGAAGGGAAAATGAAAGATATTTTAGTTCGTGTGGAT
131 AACTTGCAGATCGATCTTTAGCTCAACTTGAAGGGAAAATGAAAGATATTTTAGTTCGTATGGAT
** *
24475522 AAATTTGTTTTTCCGGCTGATTTTATCATACTTGA
196 AAATTCATTTTTCCAGCTGATTTTATCATACTTGA
* *
24475557 CTATGTTCGATTGGAAATCATTATTTGGGAAAAGCTTTATGC-AATTGGGAGCTAGAATCAGTCT
1 CTATGTTCGATTGGAAATCAATATTTGGGAAAAGCTTTATGCGAATTGGGAGCTAGAATCAATCT
* *
24475621 CATGCCACTATCTACTTTTAGAAAGTTGGGAATTGGTCATATGAAACTCATTACAGTGACATTGC
66 CATGCCACTATCTACTTTTAGAAAGTTGGGAATTGGTCATATGAAACCCATTACAGTGACATTAC
* *
24475686 AACTTGCAGATTGATCTTTAGCTCAACTTGAAGGGTAAATGAAAGATATTTTAGTTCGTATGGAT
131 AACTTGCAGATCGATCTTTAGCTCAACTTGAAGGGAAAATGAAAGATATTTTAGTTCGTATGGAT
* *
24475751 ACATTCATTTTTTCAGCTGATTTTATCATACTTGA
196 AAATTCATTTTTCCAGCTGATTTTATCATACTTGA
24475786 CTA
1 CTA
24475789 CGAGGCAGGC
Statistics
Matches: 215, Mismatches: 17, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
229 175 0.81
230 40 0.19
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (230 bp):
CTATGTTCGATTGGAAATCAATATTTGGGAAAAGCTTTATGCGAATTGGGAGCTAGAATCAATCT
CATGCCACTATCTACTTTTAGAAAGTTGGGAATTGGTCATATGAAACCCATTACAGTGACATTAC
AACTTGCAGATCGATCTTTAGCTCAACTTGAAGGGAAAATGAAAGATATTTTAGTTCGTATGGAT
AAATTCATTTTTCCAGCTGATTTTATCATACTTGA
Found at i:24488262 original size:41 final size:41
Alignment explanation
Indices: 24488168--24488248 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
24488158 GCTTCCAACC
*
24488168 AAATCGAGCTTTTGAATTACTATAAAATAGGAAAATAAAAA
1 AAATCAAGCTTTTGAATTACTATAAAATAGGAAAATAAAAA
*
24488209 AAATCAAACTTTTGAATTACTATAAAATAGGAAAATAAAA
1 AAATCAAGCTTTTGAATTACTATAAAATAGGAAAATAAAA
24488249 CAGAGTAAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.56, C:0.07, G:0.10, T:0.27
Consensus pattern (41 bp):
AAATCAAGCTTTTGAATTACTATAAAATAGGAAAATAAAAA
Found at i:24488706 original size:25 final size:25
Alignment explanation
Indices: 24488668--24488733 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
24488658 TGTAAACGGG
* *
24488668 AAGCTCTTTCGAGCCATATAATAGG-
1 AAGCTCATACGAGCCATATAA-AGGT
* * *
24488693 AAGCTCATATGAGCCATGTAACGGT
1 AAGCTCATACGAGCCATATAAAGGT
24488718 AAGCTCATACGAGCCA
1 AAGCTCATACGAGCCA
24488734 ATATCGGGAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 2 0.06
25 32 0.94
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (25 bp):
AAGCTCATACGAGCCATATAAAGGT
Found at i:24488832 original size:27 final size:27
Alignment explanation
Indices: 24488764--24488830 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
24488754 AGCCAATATT
24488764 GGGAAGCTCCG-AAGAGCCAAATAATC
1 GGGAAGCTCCGAAAGAGCCAAATAATC
* * **
24488790 GAGAAGCTCATGAAAGAGCC-TTTAATC
1 GGGAAGCTC-CGAAAGAGCCAAATAATC
24488817 GGGAAGCTCCGAAA
1 GGGAAGCTCCGAAA
24488831 AGCTATATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
26 12 0.36
27 14 0.42
28 7 0.21
ACGTcount: A:0.37, C:0.21, G:0.27, T:0.15
Consensus pattern (27 bp):
GGGAAGCTCCGAAAGAGCCAAATAATC
Found at i:24491015 original size:34 final size:34
Alignment explanation
Indices: 24490972--24491036 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
24490962 AGACATTCAG
24490972 ATTTATGCTTTTACTCAAAAAAACCTTCCAAATT
1 ATTTATGCTTTTACTCAAAAAAACCTTCCAAATT
* *
24491006 ATTTATGCTTTTAGTCAAAACAACCTTCCAA
1 ATTTATGCTTTTACTCAAAAAAACCTTCCAA
24491037 TATTCTATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.37, C:0.22, G:0.05, T:0.37
Consensus pattern (34 bp):
ATTTATGCTTTTACTCAAAAAAACCTTCCAAATT
Found at i:24512025 original size:17 final size:17
Alignment explanation
Indices: 24511989--24512030 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
24511979 TCTCTTTCTA
*
24511989 TAATTTTTTATTTTTGT
1 TAATTTTTTAATTTTGT
24512006 TAATTTTGTTAATTTT-T
1 TAATTTT-TTAATTTTGT
24512023 TAAATTTT
1 T-AATTTT
24512031 ATAAAAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (17 bp):
TAATTTTTTAATTTTGT
Found at i:24512969 original size:20 final size:22
Alignment explanation
Indices: 24512944--24512989 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
24512934 ACCTTATGTC
24512944 AATAATATGAATCAATTTTTAAT
1 AATAAT-TGAATCAATTTTTAAT
24512967 AATAGAATTGAATCAATTTTTAA
1 AAT--AATTGAATCAATTTTTAA
24512990 ACAAAAAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 3 0.14
24 15 0.71
25 3 0.14
ACGTcount: A:0.48, C:0.04, G:0.07, T:0.41
Consensus pattern (22 bp):
AATAATTGAATCAATTTTTAAT
Found at i:24515280 original size:29 final size:32
Alignment explanation
Indices: 24515217--24515295 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 32
24515207 AGGGTGAAAG
*
24515217 GTATGTTTGCTATGTATGTTTAATTACTGTTTAT
1 GTATGTATGCTATGT-TGTTTAA-TACTGTTTAT
24515251 GTATGTATGCTATGTT-TTTAA-ACTG-TTAT
1 GTATGTATGCTATGTTGTTTAATACTGTTTAT
24515280 GTATGTAATG-TATGTT
1 GTATGT-ATGCTATGTT
24515296 ATGTACTATT
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
29 16 0.37
30 7 0.16
32 5 0.12
33 1 0.02
34 14 0.33
ACGTcount: A:0.23, C:0.05, G:0.19, T:0.53
Consensus pattern (32 bp):
GTATGTATGCTATGTTGTTTAATACTGTTTAT
Found at i:24515346 original size:49 final size:49
Alignment explanation
Indices: 24515281--24515657 Score: 630
Period size: 49 Copynumber: 7.7 Consensus size: 49
24515271 AACTGTTATG
* * * * *
24515281 TATGTAATGTATGTTATGTACTATTATGTACGTATGTTACTTTTACTGT
1 TATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTGT
* * *
24515330 TATGTTATGTATGTTATGTACTGTTATGCATGTATGTTACGTTTACTAT
1 TATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTGT
* *
24515379 TATGTTATGTATGTTATGAACTGTTATGTTTGTATGTTACGTTTATTGT
1 TATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTGT
24515428 TATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTGT
1 TATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTGT
* * *
24515477 TATGTTATGTATGTTATGTACTGTTTTGTTTGCATGTTACGTTTATTG-
1 TATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTGT
24515525 TATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTGT
1 TATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTGT
24515574 TATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTGT
1 TATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTGT
24515623 TATGTTATGTATGTTATGTACTGTTATGTATGTAT
1 TATGTTATGTATGTTATGTACTGTTATGTATGTAT
24515658 CACTACACCA
Statistics
Matches: 308, Mismatches: 19, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
48 45 0.15
49 263 0.85
ACGTcount: A:0.21, C:0.05, G:0.20, T:0.54
Consensus pattern (49 bp):
TATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTGT
Found at i:24515549 original size:195 final size:196
Alignment explanation
Indices: 24515281--24515657 Score: 630
Period size: 195 Copynumber: 1.9 Consensus size: 196
24515271 AACTGTTATG
* *
24515281 TATGTAATGTATGTTATGTACTATTATGTACGTATGTTACTTTTACTGTTATGTTATGTATGTTA
1 TATGTAATGTATGTTATGTACTATTATGTACGCATGTTACGTTTACTGTTATGTTATGTATGTTA
*
24515346 TGTACTGTTATGCATGTATGTTACGTTTACTATTATGTTATGTATGTTATGAACTGTTATGTTTG
66 TGTACTGTTATGCATGTATGTTACGTTTACTATTATGTTATGTATGTTATGAACTGTTATGTATG
24515411 TATGTTACGTTTATTGTTATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTG
131 TATGTTACGTTTATTGTTATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTG
24515476 T
196 T
* * * ** *
24515477 TATGTTATGTATGTTATGTACTGTTTTGTTTGCATGTTACGTTTATTG-TATGTTATGTATGTTA
1 TATGTAATGTATGTTATGTACTATTATGTACGCATGTTACGTTTACTGTTATGTTATGTATGTTA
* * * *
24515541 TGTACTGTTATGTATGTATGTTACGTTTATTGTTATGTTATGTATGTTATGTACTGTTATGTATG
66 TGTACTGTTATGCATGTATGTTACGTTTACTATTATGTTATGTATGTTATGAACTGTTATGTATG
24515606 TATGTTACGTTTATTGTTATGTTATGTATGTTATGTACTGTTATGTATGTAT
131 TATGTTACGTTTATTGTTATGTTATGTATGTTATGTACTGTTATGTATGTAT
24515658 CACTACACCA
Statistics
Matches: 168, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
195 128 0.76
196 40 0.24
ACGTcount: A:0.21, C:0.05, G:0.20, T:0.54
Consensus pattern (196 bp):
TATGTAATGTATGTTATGTACTATTATGTACGCATGTTACGTTTACTGTTATGTTATGTATGTTA
TGTACTGTTATGCATGTATGTTACGTTTACTATTATGTTATGTATGTTATGAACTGTTATGTATG
TATGTTACGTTTATTGTTATGTTATGTATGTTATGTACTGTTATGTATGTATGTTACGTTTATTG
T
Found at i:24515857 original size:43 final size:43
Alignment explanation
Indices: 24515821--24516006 Score: 218
Period size: 43 Copynumber: 4.4 Consensus size: 43
24515811 CCTTTAGTGA
* *
24515821 CGCTTCTCCGACAAACGCCGCTATAGGTCATGACCTTTAGCGG
1 CGCTTCTCCCACAAACGCCGCTATAGGTCATGACTTTTAGCGG
* * *
24515864 CGCTTCTCCCACAAACACGGCTATAGGTCATGATTTTTAG-GG
1 CGCTTCTCCCACAAACGCCGCTATAGGTCATGACTTTTAGCGG
* ** * *
24515906 CGCTTGT-ATA-AAAGCGCCGCTATAGATCATGACTTTTAGCGA
1 CGCTTCTCCCACAAA-CGCCGCTATAGGTCATGACTTTTAGCGG
* *
24515948 CGCTTAC-CCCACAAACGTCGCTATAGATCATGACTTTTAGCGG
1 CGCTT-CTCCCACAAACGCCGCTATAGGTCATGACTTTTAGCGG
24515991 CGCTTCTCCCACAAAC
1 CGCTTCTCCCACAAAC
24516007 ATCGCCGCTA
Statistics
Matches: 119, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
40 3 0.03
41 22 0.18
42 15 0.13
43 76 0.64
44 3 0.03
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.26
Consensus pattern (43 bp):
CGCTTCTCCCACAAACGCCGCTATAGGTCATGACTTTTAGCGG
Found at i:24515936 original size:84 final size:85
Alignment explanation
Indices: 24515836--24515995 Score: 227
Period size: 84 Copynumber: 1.9 Consensus size: 85
24515826 CTCCGACAAA
* * * *
24515836 CGCCGCTATAGGTCATGACCTTTAGCGGCGCTT-CTCCCACAAAC-ACGGCTATAGGTCATGATT
1 CGCCGCTATAGATCATGACCTTTAGCGACGCTTAC-CCCACAAACGAC-GCTATAGATCATGACT
24515899 TTTAG-GGCGCTTGTATAAAAG
64 TTTAGCGGCGCTTGTATAAAAG
* *
24515920 CGCCGCTATAGATCATGACTTTTAGCGACGCTTACCCCACAAACGTCGCTATAGATCATGACTTT
1 CGCCGCTATAGATCATGACCTTTAGCGACGCTTACCCCACAAACGACGCTATAGATCATGACTTT
24515985 TAGCGGCGCTT
66 TAGCGGCGCTT
24515996 CTCCCACAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
84 58 0.87
85 9 0.13
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (85 bp):
CGCCGCTATAGATCATGACCTTTAGCGACGCTTACCCCACAAACGACGCTATAGATCATGACTTT
TAGCGGCGCTTGTATAAAAG
Found at i:24516415 original size:21 final size:21
Alignment explanation
Indices: 24516335--24516418 Score: 89
Period size: 21 Copynumber: 4.0 Consensus size: 21
24516325 TTTTGCTCTG
24516335 CTCTGCTTCCCTCGCTG-TAGC
1 CTCTGCTTCCCTCGCTGCT-GC
** * *
24516356 CTCTGCTTGTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCTGC
**
24516377 CTCTGCTTGTCTCGCTGCTGC
1 CTCTGCTTCCCTCGCTGCTGC
*
24516398 CTCTACTTCCCTCGCTGCTGC
1 CTCTGCTTCCCTCGCTGCTGC
24516419 ATTTGCTTTA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.04, C:0.40, G:0.20, T:0.36
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCTGC
Found at i:24519581 original size:40 final size:40
Alignment explanation
Indices: 24519512--24519592 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
24519502 TTGGGGATTT
* * *
24519512 GGGGAAATAAAATTGGGGAAATTATGGGAAAAGGAATTGG
1 GGGGAAATAAAATCGGGGAAATTAGGGGAAAAGGAAATGG
* * * *
24519552 GGGGAAATGAAATCGGGGAAGTTGGGGGAATAGGAAATGG
1 GGGGAAATAAAATCGGGGAAATTAGGGGAAAAGGAAATGG
24519592 G
1 G
24519593 AAATTAGGGA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.38, C:0.01, G:0.43, T:0.17
Consensus pattern (40 bp):
GGGGAAATAAAATCGGGGAAATTAGGGGAAAAGGAAATGG
Found at i:24519616 original size:23 final size:24
Alignment explanation
Indices: 24519553--24519619 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 24
24519543 AGGAATTGGG
* * *
24519553 GGGAAATGAAATCGGGGAAGTTGG
1 GGGAAATGAAATTGGGGAAATTGA
*
24519577 GGGAATAGGAAA-T-GGGAAATT-A
1 GGGAA-ATGAAATTGGGGAAATTGA
24519599 GGGAAATGAAATTGGGGAAAT
1 GGGAAATGAAATTGGGGAAAT
24519620 CAGAGTGGGA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
21 5 0.14
22 6 0.17
23 14 0.40
24 5 0.14
25 5 0.14
ACGTcount: A:0.40, C:0.01, G:0.40, T:0.18
Consensus pattern (24 bp):
GGGAAATGAAATTGGGGAAATTGA
Found at i:24519990 original size:115 final size:116
Alignment explanation
Indices: 24519781--24520191 Score: 506
Period size: 115 Copynumber: 3.6 Consensus size: 116
24519771 ATAATTACGA
* ** * *
24519781 CACTAAAACATATCCTTTACCGGCGTTTTAGTACAAACACCACTAAAAACGTAGATAAAAACGAC
1 CACTAACACATATCCTTTTGCGGCGTTTTAGTAAAAACGCCACTAAAAACGTAGATAAAAACGAC
* * * * * *
24519846 AACGTTTAGCGAACAATTATAACATAATTGCGACGTTTTTTGTAAAAGCGC
66 AACGTTTACCAAATACTAATAACATAATTGCGACGTTTTTTGTAAAAACGC
* * * * * *
24519897 CACTACCACATAACCTTTCGCTGCGTTTTAGTAAAAA-GCCACTAATAATGTAGATAAAAACGAC
1 CACTAACACATATCCTTTTGCGGCGTTTTAGTAAAAACGCCACTAAAAACGTAGATAAAAACGAC
* * **
24519961 AACGTTTACCAAATACTAATAATACAATTGC-AGCG-TTTTCCTAAAAACGC
66 AACGTTTACCAAATACTAATAACATAATTGCGA-CGTTTTTTGTAAAAACGC
** *
24520011 CACTAACACATATCCTTTTGCGGTATTTTGGTAAAAACGCCACTAAAAACGTAGATAAAAACGAC
1 CACTAACACATATCCTTTTGCGGCGTTTTAGTAAAAACGCCACTAAAAACGTAGATAAAAACGAC
* * *
24520076 AACGTTTACCAAATACTAAAAACATAATTGCGGCATTTTTTGTAAAAACGC
66 AACGTTTACCAAATACTAATAACATAATTGCGACGTTTTTTGTAAAAACGC
* * * *
24520127 CACTAATACACATCCTTTTGCGGCGTTTTAGCAAAAACGCCACTAAAAACGCAGAT-AAAACGAC
1 CACTAACACATATCCTTTTGCGGCGTTTTAGTAAAAACGCCACTAAAAACGTAGATAAAAACGAC
24520191 A
66 A
24520192 CCATTATGCT
Statistics
Matches: 248, Mismatches: 43, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
114 43 0.17
115 113 0.46
116 92 0.37
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.25
Consensus pattern (116 bp):
CACTAACACATATCCTTTTGCGGCGTTTTAGTAAAAACGCCACTAAAAACGTAGATAAAAACGAC
AACGTTTACCAAATACTAATAACATAATTGCGACGTTTTTTGTAAAAACGC
Found at i:24520376 original size:7 final size:7
Alignment explanation
Indices: 24520366--24520748 Score: 87
Period size: 7 Copynumber: 53.9 Consensus size: 7
24520356 AAATAAAATT
24520366 TAAACCC
1 TAAACCC
*
24520373 TAAACCA
1 TAAACCC
*
24520380 TAAGCCC
1 TAAACCC
* * *
24520387 TTAGCCTT
1 TAAACC-C
*
24520395 TAAACCT
1 TAAACCC
*
24520402 TAAACTCG
1 TAAAC-CC
24520410 T-AACCC
1 TAAACCC
*
24520416 TTAAACTC
1 -TAAACCC
*
24520424 TAACCTCC
1 TAAAC-CC
24520432 TAAACCC
1 TAAACCC
***
24520439 TAAATAA
1 TAAACCC
*
24520446 TAAACAC
1 TAAACCC
* *
24520453 TAGACCA
1 TAAACCC
24520460 TAAA-CC
1 TAAACCC
* *
24520466 TACACCA
1 TAAACCC
*
24520473 TAAACAC
1 TAAACCC
*
24520480 TAAACTC
1 TAAACCC
* **
24520487 TTAACAT
1 TAAACCC
* *
24520494 TAAATCA
1 TAAACCC
*
24520501 TAAACCT
1 TAAACCC
**
24520508 TAAACTT
1 TAAACCC
*
24520515 TATACCC
1 TAAACCC
*
24520522 TAAA-CA
1 TAAACCC
*
24520528 TACACCC
1 TAAACCC
**
24520535 TAAACTG
1 TAAACCC
24520542 TAAACCC
1 TAAACCC
24520549 TAAA---
1 TAAACCC
*
24520553 TTAACCC
1 TAAACCC
**
24520560 TAAACTT
1 TAAACCC
**
24520567 TAAACTT
1 TAAACCC
*
24520574 TAAACCT
1 TAAACCC
*
24520581 TAAACCT
1 TAAACCC
24520588 TAAACCC
1 TAAACCC
*
24520595 TAAACCA
1 TAAACCC
*
24520602 TATAACCT
1 TA-AACCC
24520610 TAAACCAC
1 TAAACC-C
24520618 TAAACCAC
1 TAAACC-C
24520626 TAAACCC
1 TAAACCC
* *
24520633 TTAACCTA
1 TAAACC-C
24520641 TAAACCC
1 TAAACCC
*
24520648 TTAAATCC
1 -TAAACCC
*
24520656 AAAACCC
1 TAAACCC
*
24520663 TAAGCCAC
1 TAAACC-C
**
24520671 TACCCCC
1 TAAACCC
*
24520678 TAGACCC
1 TAAACCC
*
24520685 TAAGCCC
1 TAAACCC
*
24520692 ATAACCCC
1 -TAAACCC
24520700 TAAACCC
1 TAAACCC
** *
24520707 TATGCTTC
1 TAAAC-CC
24520715 T-AACCAC
1 TAAACC-C
*
24520722 TAAACAC
1 TAAACCC
*
24520729 TAAACAC
1 TAAACCC
*
24520736 TAAACCA
1 TAAACCC
24520743 TAAACC
1 TAAACC
24520749 ACGAACGGTA
Statistics
Matches: 271, Mismatches: 86, Indels: 38
0.69 0.22 0.10
Matches are distributed among these distances:
4 3 0.01
6 9 0.03
7 197 0.73
8 62 0.23
ACGTcount: A:0.42, C:0.33, G:0.02, T:0.23
Consensus pattern (7 bp):
TAAACCC
Found at i:24520419 original size:15 final size:14
Alignment explanation
Indices: 24520399--24520428 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
24520389 AGCCTTTAAA
24520399 CCTTAAACTCGTAAC
1 CCTTAAACTC-TAAC
24520414 CCTTAAACTCTAAC
1 CCTTAAACTCTAAC
24520428 C
1 C
24520429 TCCTAAACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.33, C:0.37, G:0.03, T:0.27
Consensus pattern (14 bp):
CCTTAAACTCTAAC
Found at i:24520474 original size:13 final size:14
Alignment explanation
Indices: 24520445--24520481 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
24520435 ACCCTAAATA
*
24520445 ATAAACACTAGACC
1 ATAAACACTACACC
24520459 ATAAAC-CTACACC
1 ATAAACACTACACC
24520472 ATAAACACTA
1 ATAAACACTA
24520482 AACTCTTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.51, C:0.30, G:0.03, T:0.16
Consensus pattern (14 bp):
ATAAACACTACACC
Found at i:24520525 original size:14 final size:13
Alignment explanation
Indices: 24520503--24520569 Score: 59
Period size: 13 Copynumber: 5.2 Consensus size: 13
24520493 TTAAATCATA
*
24520503 AACCTTAAACTTT
1 AACCCTAAACTTT
*
24520516 ATACCCTAAAC-AT
1 A-ACCCTAAACTTT
*
24520529 ACACCCTAAACTGTA
1 A-ACCCTAAACT-TT
24520544 AACCCTAAA--TT
1 AACCCTAAACTTT
24520555 AACCCTAAACTTT
1 AACCCTAAACTTT
24520568 AA
1 AA
24520570 ACTTTAAACC
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
11 10 0.23
13 16 0.37
14 16 0.37
15 1 0.02
ACGTcount: A:0.43, C:0.28, G:0.01, T:0.27
Consensus pattern (13 bp):
AACCCTAAACTTT
Found at i:24520538 original size:27 final size:26
Alignment explanation
Indices: 24520494--24520571 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
24520484 CTCTTAACAT
* *
24520494 TAAATCATAAACCTTAAACTTTATACCC
1 TAAA-CAT-AACCCTAAACTTTAAACCC
*
24520522 TAAACATACACCCTAAACTGTAAACCC
1 TAAACATA-ACCCTAAACTTTAAACCC
*
24520549 TAAA-TTAACCCTAAACTTTAAAC
1 TAAACATAACCCTAAACTTTAAAC
24520572 TTTAAACCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
25 15 0.34
26 3 0.07
27 22 0.50
28 4 0.09
ACGTcount: A:0.45, C:0.27, G:0.01, T:0.27
Consensus pattern (26 bp):
TAAACATAACCCTAAACTTTAAACCC
Found at i:24520583 original size:14 final size:14
Alignment explanation
Indices: 24520395--24520648 Score: 110
Period size: 14 Copynumber: 18.1 Consensus size: 14
24520385 CCTTAGCCTT
*
24520395 TAAACCTTAAACTCG
1 TAAACCTTAAAC-CC
* *
24520410 TAACCCTTAAACTC
1 TAAACCTTAAACCC
24520424 T-AACCTCCTAAACCC
1 TAAACCT--TAAACCC
*** *
24520439 TAAATAATAAACAC
1 TAAACCTTAAACCC
* *
24520453 TAGACCATAAA-CC
1 TAAACCTTAAACCC
* * *
24520466 TACACCATAAACAC
1 TAAACCTTAAACCC
**
24520480 TAAACTCTT-AACAT
1 TAAAC-CTTAAACCC
* * *
24520494 TAAATCATAAACCT
1 TAAACCTTAAACCC
* *
24520508 TAAACTTTATACCC
1 TAAACCTTAAACCC
* *
24520522 TAAA-CATACACCC
1 TAAACCTTAAACCC
24520535 TAAA-CTGTAAACCC
1 TAAACCT-TAAACCC
24520549 TAAA--TT-AACCC
1 TAAACCTTAAACCC
* **
24520560 TAAACTTTAAACTT
1 TAAACCTTAAACCC
*
24520574 TAAACCTTAAACCT
1 TAAACCTTAAACCC
* *
24520588 TAAACCCTAAACCA
1 TAAACCTTAAACCC
24520602 TATAACCTTAAACCAC
1 TA-AACCTTAAACC-C
*
24520618 TAAACCACTAAACCC
1 TAAACC-TTAAACCC
*
24520633 TTAACCTATAAACCC
1 TAAACCT-TAAACCC
24520648 T
1 T
24520649 TAAATCCAAA
Statistics
Matches: 183, Mismatches: 42, Indels: 28
0.72 0.17 0.11
Matches are distributed among these distances:
11 9 0.05
12 1 0.01
13 31 0.17
14 84 0.46
15 48 0.26
16 10 0.05
ACGTcount: A:0.44, C:0.30, G:0.01, T:0.25
Consensus pattern (14 bp):
TAAACCTTAAACCC
Found at i:24520638 original size:23 final size:22
Alignment explanation
Indices: 24520574--24520636 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 22
24520564 CTTTAAACTT
*
24520574 TAAACCTTAAACCTTAAACC-C
1 TAAACCATAAACCTTAAACCAC
24520595 TAAACCATATAACCTTAAACCAC
1 TAAACCATA-AACCTTAAACCAC
24520618 TAAACCACTAAACCCTTAA
1 TAAACCA-TAAA-CCTTAA
24520637 CCTATAAACC
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
21 8 0.22
22 11 0.30
23 10 0.27
24 8 0.22
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (22 bp):
TAAACCATAAACCTTAAACCAC
Found at i:24520647 original size:15 final size:15
Alignment explanation
Indices: 24520604--24520651 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
24520594 CTAAACCATA
24520604 TAACCT-TAAACCACT
1 TAACCTATAAACC-CT
*
24520619 AAACC-ACTAAACCCT
1 TAACCTA-TAAACCCT
24520634 TAACCTATAAACCCT
1 TAACCTATAAACCCT
24520649 TAA
1 TAA
24520652 ATCCAAAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 21 0.75
16 7 0.25
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.23
Consensus pattern (15 bp):
TAACCTATAAACCCT
Found at i:24520684 original size:22 final size:22
Alignment explanation
Indices: 24520657--24520708 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
24520647 CTTAAATCCA
*
24520657 AAACCCTAAG-CCACTACCCCCT
1 AAACCCTAAGCCCA-TAACCCCT
*
24520679 AGACCCTAAGCCCATAACCCCT
1 AAACCCTAAGCCCATAACCCCT
24520701 AAACCCTA
1 AAACCCTA
24520709 TGCTTCTAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 23 0.88
23 3 0.12
ACGTcount: A:0.35, C:0.46, G:0.06, T:0.13
Consensus pattern (22 bp):
AAACCCTAAGCCCATAACCCCT
Found at i:24520987 original size:39 final size:39
Alignment explanation
Indices: 24520904--24520988 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
24520894 GGCGTTTTTC
* * *
24520904 CTAAAAGCGCCGCTAATGCTCATCTATAGCGGCGCTTCT
1 CTAAAAACGCCGCTAATGCTCATATATAGCGGCGCTTAT
*
24520943 CTAAAAACGCCGCTAAT-CATCGATATATTGCGGCGCTTAT
1 CTAAAAACGCCGCTAATGC-TC-ATATATAGCGGCGCTTAT
24520983 -TAAAAA
1 CTAAAAA
24520989 GCGCAGATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
38 1 0.03
39 24 0.60
40 15 0.38
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (39 bp):
CTAAAAACGCCGCTAATGCTCATATATAGCGGCGCTTAT
Found at i:24521547 original size:25 final size:25
Alignment explanation
Indices: 24521475--24521557 Score: 72
Period size: 25 Copynumber: 3.6 Consensus size: 25
24521465 TATTGTTAAG
*
24521475 TATGTATGTTATGTTTGTATATTTG-
1 TATGTATG-TATATTTGTATATTTGT
* *
24521500 TATGTATGT-TA----TATATATAT
1 TATGTATGTATATTTGTATATTTGT
24521520 TATGTATGTATATTTGTATATTTGT
1 TATGTATGTATATTTGTATATTTGT
*
24521545 TATGTGT-TATATT
1 TATGTATGTATATT
24521558 ACTGTTATGT
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
19 6 0.13
20 9 0.20
21 2 0.04
23 1 0.02
24 7 0.15
25 21 0.46
ACGTcount: A:0.25, C:0.00, G:0.16, T:0.59
Consensus pattern (25 bp):
TATGTATGTATATTTGTATATTTGT
Found at i:24521576 original size:19 final size:19
Alignment explanation
Indices: 24521532--24521578 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
24521522 TGTATGTATA
24521532 TTTGTATATT--TGTTATG
1 TTTGTATATTACTGTTATG
*
24521549 TGT-TATATTACTGTTATG
1 TTTGTATATTACTGTTATG
24521567 TTTGTATATTAC
1 TTTGTATATTAC
24521579 GTGTGTCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 6 0.24
17 2 0.08
18 9 0.36
19 8 0.32
ACGTcount: A:0.21, C:0.04, G:0.15, T:0.60
Consensus pattern (19 bp):
TTTGTATATTACTGTTATG
Found at i:24521658 original size:4 final size:4
Alignment explanation
Indices: 24521649--24521719 Score: 106
Period size: 4 Copynumber: 17.2 Consensus size: 4
24521639 TATTAATGTT
* *
24521649 TATG TATG TATAT TATG TATG CATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TAT-G TATG TATG TATG TATG TATG TATG TATG TATG TATG
24521698 TATG TATG TATG TATG TTATG T
1 TATG TATG TATG TATG -TATG T
24521720 TTATCACTGT
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
4 54 0.89
5 7 0.11
ACGTcount: A:0.25, C:0.01, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Done.