Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35726063
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1821929 characters in sequence are not A, C, G, or T
File 89 of 109
Found at i:28393910 original size:84 final size:84
Alignment explanation
Indices: 28393772--28393932 Score: 277
Period size: 84 Copynumber: 1.9 Consensus size: 84
28393762 TGTACTTGGC
* *
28393772 AGTATTTGGGAATTTGATGGGATACGTGCTCGGCCAACACGATGAGTCAGGAAGGAAAAAAGAGT
1 AGTATTTGGGAATTCGATGGGATACGTGCTCGGCCAACACGATGAGTCAAGAAGGAAAAAAGAGT
28393837 GATATACTACATACTTAGT
66 GATATACTACATACTTAGT
* * *
28393856 AGTATTTGGGAATTCGATGGGATGCGTGCTTGGCCGACACGATGAGTCAAGAAGGAAAAAAGAGT
1 AGTATTTGGGAATTCGATGGGATACGTGCTCGGCCAACACGATGAGTCAAGAAGGAAAAAAGAGT
28393921 GATATACTACAT
66 GATATACTACAT
28393933 TAGCAAGAAG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 72 1.00
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (84 bp):
AGTATTTGGGAATTCGATGGGATACGTGCTCGGCCAACACGATGAGTCAAGAAGGAAAAAAGAGT
GATATACTACATACTTAGT
Found at i:28396999 original size:44 final size:44
Alignment explanation
Indices: 28396923--28397417 Score: 350
Period size: 44 Copynumber: 10.9 Consensus size: 44
28396913 CATTGTGGTG
* * * * *
28396923 AATCTTATCTCACTGAAGATGCAGTGGGGCAGATTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * * *
28396967 AATCTTATCTCCCTGAAGTTGTAGAGGAGCAGATTAAAACAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * *
28397011 AATCTTATCTTCCTGAAGTTGCAGTAGAGCAAATTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CA
* * ** *
28397056 AATCTTATTTCCCTGAAGTTGTAGTGGAATAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G----AAGCTACA
* * *
28397107 AATCTTATCTCCCTGGAGTTGCAGTGGAGCAGATCGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * *
28397151 AGTCTTATCTCCCTTAAGTAGCAGTGGAGTAGATTGAAG-TGACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT-ACA
* * ** * *
28397195 AATCCTATAC-CTCTGAAGTTGCAGTAGG-TTAGATTAAATCTACCA
1 AATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGATTGAAGCTA-CA
* **
28397240 TAGCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTG
1 -A---A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CA
* * * *
28397290 AATCTTATCTCCCTGAAGTTGCAATGGAGAATATTGAAGATA-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * * * * * *
28397333 TGAATCTAATCTCTCTGAAGTTGTAATGGAACTGTTTGAAGCTACT
1 --AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
*
28397379 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
28397418 TGACAAAGCC
Statistics
Matches: 354, Mismatches: 74, Indels: 46
0.75 0.16 0.10
Matches are distributed among these distances:
43 1 0.00
44 174 0.49
45 106 0.30
46 2 0.01
48 2 0.01
49 5 0.01
50 28 0.08
51 31 0.09
52 5 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
Found at i:28397137 original size:140 final size:137
Alignment explanation
Indices: 28396964--28397413 Score: 398
Period size: 140 Copynumber: 3.3 Consensus size: 137
28396954 GATTAAAGCC
* * * *
28396964 ACAAATCTTATCTCCCTGAAGTTGTAGAGGAGCAGATTAAAACAACAAATCTTATCTTCCTGAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAACAAATCTTATCTCCCTGAAG
*
28397029 TTGCAGTAGAGCAAATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGTAGTGGAATAGATTAAA
66 TTGCAGTGGAG-AAATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGTAGTGGAATAGATTAAA
28397094 GCTACAAGTT
130 GCTACAA--T
* ** * * * *
28397104 ACAAATCTTATCTCCCTGGAGTTGCAGTGGAGCAGATCGAAGTTACAAGTCTTATCTCCCTTAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAACAAATCTTATCTCCCTGAAG
* * * * * *
28397169 TAGCAGTGGAGTAGATTGAAG-T-GACAAATCCTA-TACCTCTGAAGTTGCAGTAGG-TTAGATT
66 TTGCAGTGGAG-AAATTGAAGATAG-CAAATCTTATTTCC-CTGAAGTTGTAGT-GGAATAGATT
* *
28397230 AAATCTACCAT
127 AAAGCTACAAT
* * * ***
28397241 AGCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTGAATCTTATCTCCCTGA
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATAACAAATCTTATCTCCCTGA
* *** * * * * *
28397306 AGTTGCAATGGAGAATATTGAAGATAATGAATCTAATCTCTCTGAAGTTGTAATGGAACT-GTTT
64 AGTTGCAGTGGAGAA-ATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGTAGTGGAA-TAGATT
*
28397370 GAAGCTAC--T
127 AAAGCTACAAT
*
28397379 ---AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
28397414 GAAGTGACAA
Statistics
Matches: 246, Mismatches: 53, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
134 33 0.13
137 2 0.01
138 39 0.16
139 71 0.29
140 99 0.40
141 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (137 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAACAAATCTTATCTCCCTGAAG
TTGCAGTGGAGAAATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGTAGTGGAATAGATTAAAG
CTACAAT
Found at i:28397151 original size:51 final size:51
Alignment explanation
Indices: 28397054--28397153 Score: 128
Period size: 51 Copynumber: 2.0 Consensus size: 51
28397044 TTGAAGATAG
* * * *
28397054 CAAATCTTATTTCCCTGAAGTTGTAGTGGAATAGATTAAAGCTACAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAGCTACAAGTTA
* * * *
28397105 CAAATCTTATCTCCCTGGAGTTGCAGTGGAGCAGATCGAAGTTACAAGT
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAGCTACAAGT
28397154 CTTATCTCCC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (51 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAGCTACAAGTTA
Found at i:28399340 original size:14 final size:13
Alignment explanation
Indices: 28399275--28399352 Score: 56
Period size: 13 Copynumber: 5.8 Consensus size: 13
28399265 AAGCTTTTAT
*
28399275 TTTATTTTATTTCC
1 TTTATTTTA-TTCA
28399289 TTTATTTGT-TT-A
1 TTTATTT-TATTCA
*
28399301 TTTACTTGT-TT-A
1 TTTA-TTTTATTCA
28399313 TTTATTCATTATTCA
1 TTTATT--TTATTCA
28399328 TTTTATTTTATTCA
1 -TTTATTTTATTCA
28399342 TTTATTTTATT
1 TTTATTTTATT
28399353 TTAATCCTTG
Statistics
Matches: 54, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
11 2 0.04
12 12 0.22
13 16 0.30
14 16 0.30
15 2 0.04
16 6 0.11
ACGTcount: A:0.19, C:0.08, G:0.03, T:0.71
Consensus pattern (13 bp):
TTTATTTTATTCA
Found at i:28399403 original size:23 final size:22
Alignment explanation
Indices: 28399338--28399404 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 22
28399328 TTTTATTTTA
*
28399338 TTCATTTATTTTATT-TTAATCC
1 TTCATTTATTTT-TTATTATTCC
*
28399360 TTGCATTCATTTATTTATTATTCC
1 TT-CATTTATTT-TTTATTATTCC
28399384 TTCATTTATTATTTTATTATT
1 TTCATTTATT-TTTTATTATT
28399405 TTTTATTTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
22 2 0.05
23 26 0.68
24 10 0.26
ACGTcount: A:0.22, C:0.12, G:0.01, T:0.64
Consensus pattern (22 bp):
TTCATTTATTTTTTATTATTCC
Found at i:28399427 original size:27 final size:27
Alignment explanation
Indices: 28399397--28399457 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
28399387 ATTTATTATT
*
28399397 TTATTATTTTTTA-TTTTCGTTCATCGA
1 TTATTATTTTTTATTTTTCCTTCAT-GA
* *
28399424 TTATT-TATTTTATTTTTCCTTCATTA
1 TTATTATTTTTTATTTTTCCTTCATGA
28399450 TTATTATT
1 TTATTATT
28399458 ACTATTTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 12 0.43
27 16 0.57
ACGTcount: A:0.20, C:0.10, G:0.03, T:0.67
Consensus pattern (27 bp):
TTATTATTTTTTATTTTTCCTTCATGA
Found at i:28399427 original size:32 final size:34
Alignment explanation
Indices: 28399368--28399440 Score: 87
Period size: 32 Copynumber: 2.2 Consensus size: 34
28399358 CCTTGCATTC
**
28399368 ATTTATTTATTATTCCTTCATTTATTATTT-TATT
1 ATTT-TTTATTATTCCTTCATCGATTATTTATATT
* *
28399402 ATTTTTTATT-TTCGTTCATCGATTATTTATTTT
1 ATTTTTTATTATTCCTTCATCGATTATTTATATT
28399435 ATTTTT
1 ATTTTT
28399441 CCTTCATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 15 0.44
33 15 0.44
34 4 0.12
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (34 bp):
ATTTTTTATTATTCCTTCATCGATTATTTATATT
Found at i:28399467 original size:14 final size:15
Alignment explanation
Indices: 28399450--28399479 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
28399440 TCCTTCATTA
28399450 TTATTATTA-CTATT
1 TTATTATTATCTATT
28399464 TTATTATTATCTATT
1 TTATTATTATCTATT
28399479 T
1 T
28399480 ATCTATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATTATTATCTATT
Found at i:28399487 original size:58 final size:57
Alignment explanation
Indices: 28399368--28399495 Score: 138
Period size: 59 Copynumber: 2.2 Consensus size: 57
28399358 CCTTGCATTC
* * *
28399368 ATTTA-TTTATTATTCCTTCATTTATTATTTTATTATTTTTTATTTTCGTTCATCGATT
1 ATTTATTTTATTATTCCTTCATTTATTATTTTACTATTTTTTATTATCATTCATC-A-T
* *
28399426 ATTTATTTTATTTTTCCTTCA-TTATTATTATTACTATTTTATTATTATCTATTTATC-T
1 ATTTATTTTATTATTCCTTCATTTATTATT-TTACTATTTT-TTATTATC-ATTCATCAT
28399484 ATTTA-TTTATTA
1 ATTTATTTTATTA
28399496 CCCTTTTTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
57 6 0.10
58 19 0.32
59 23 0.38
60 7 0.12
61 5 0.08
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.66
Consensus pattern (57 bp):
ATTTATTTTATTATTCCTTCATTTATTATTTTACTATTTTTTATTATCATTCATCAT
Found at i:28399566 original size:3 final size:3
Alignment explanation
Indices: 28399558--28399584 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
28399548 TTTATTGTTC
28399558 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
28399585 CTTACCCTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:28399567 original size:23 final size:23
Alignment explanation
Indices: 28399524--28399567 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
28399514 AAATTAGATT
* *
28399524 ATTTATGTTTTTTTTACTTATAC
1 ATTTATGTTCTTATTACTTATAC
28399547 ATTTATTGTTCTTATTA-TTAT
1 ATTTA-TGTTCTTATTACTTAT
28399568 TATTATTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 9 0.50
24 9 0.50
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.66
Consensus pattern (23 bp):
ATTTATGTTCTTATTACTTATAC
Found at i:28406939 original size:24 final size:24
Alignment explanation
Indices: 28406907--28406955 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
28406897 CTATATGATA
*
28406907 TAAATGACGATTATGTGGTGGTTT
1 TAAATGACGACTATGTGGTGGTTT
28406931 TAAATGACGACTATGTGGTGGTTT
1 TAAATGACGACTATGTGGTGGTTT
28406955 T
1 T
28406956 CTTATGCATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.06, G:0.29, T:0.41
Consensus pattern (24 bp):
TAAATGACGACTATGTGGTGGTTT
Found at i:28408595 original size:30 final size:30
Alignment explanation
Indices: 28408556--28408612 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
28408546 TTTTATAAAT
28408556 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
28408586 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
28408613 AACAAGTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:28409104 original size:17 final size:17
Alignment explanation
Indices: 28409075--28409115 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
28409065 ATTCAGATTG
28409075 ATTTGAA-CTAAAAAAA
1 ATTTGAATCTAAAAAAA
**
28409091 ATTTGAATCTAAAATTA
1 ATTTGAATCTAAAAAAA
28409108 ATTTGAAT
1 ATTTGAAT
28409116 TCAAATTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (17 bp):
ATTTGAATCTAAAAAAA
Found at i:28409121 original size:16 final size:17
Alignment explanation
Indices: 28409075--28409130 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 17
28409065 ATTCAGATTG
**
28409075 ATTTGAA-CTAAAAAAA
1 ATTTGAATCTAAAATTA
28409091 ATTTGAATCTAAAATTA
1 ATTTGAATCTAAAATTA
* *
28409108 ATTTGAAT-TCAAATTT
1 ATTTGAATCTAAAATTA
28409124 ATTTGAA
1 ATTTGAA
28409131 ATTATTGGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
16 20 0.57
17 15 0.43
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.39
Consensus pattern (17 bp):
ATTTGAATCTAAAATTA
Found at i:28409291 original size:16 final size:16
Alignment explanation
Indices: 28409262--28409331 Score: 52
Period size: 16 Copynumber: 4.3 Consensus size: 16
28409252 ACTTGACATC
* *
28409262 AAAATTACTCAAATTT
1 AAAATTATTTAAATTT
28409278 AAAATTATTTAAATCTT
1 AAAATTATTTAAAT-TT
* *
28409295 -AAATGATTTAAGTTT
1 AAAATTATTTAAATTT
* * *
28409310 GAAGTTAATTTAAAATT
1 AAAATT-ATTTAAATTT
28409327 AAAAT
1 AAAAT
28409332 AACATGAACA
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
15 2 0.05
16 26 0.63
17 13 0.32
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.41
Consensus pattern (16 bp):
AAAATTATTTAAATTT
Found at i:28415185 original size:14 final size:14
Alignment explanation
Indices: 28415157--28415202 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
28415147 GAGAAAAAAA
28415157 AAGGAGAGAAAGGAG
1 AAGGAGAG-AAGGAG
28415172 AAGGAGAGAAGGAG
1 AAGGAGAGAAGGAG
* * *
28415186 ACGAAGAGAAGAAG
1 AAGGAGAGAAGGAG
28415200 AAG
1 AAG
28415203 AAGAAGAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
14 19 0.70
15 8 0.30
ACGTcount: A:0.54, C:0.02, G:0.43, T:0.00
Consensus pattern (14 bp):
AAGGAGAGAAGGAG
Found at i:28417800 original size:26 final size:27
Alignment explanation
Indices: 28417738--28417802 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
28417728 CATATTTATG
28417738 TAATGATTTTTTATGTAAATAAAATTA
1 TAATGATTTTTTATGTAAATAAAATTA
*
28417765 TAATGGTTTTTTATGTAAATAAAATTA
1 TAATGATTTTTTATGTAAATAAAATTA
28417792 TAAT-ATTTTTT
1 TAATGATTTTTT
28417803 TTATTTTGCA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 6 0.17
27 30 0.83
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (27 bp):
TAATGATTTTTTATGTAAATAAAATTA
Found at i:28420430 original size:18 final size:18
Alignment explanation
Indices: 28420403--28420451 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
28420393 ATACCTTATT
28420403 TTTTTCTTCTTTTCCTTCC
1 TTTTT-TTCTTTTCCTTCC
*
28420422 TTTTTTTCTTTTGCTTCC
1 TTTTTTTCTTTTCCTTCC
28420440 TTCTTATTTCTT
1 TT-TT-TTTCTT
28420452 CCGTTTCTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 14 0.52
19 7 0.26
20 6 0.22
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTTTTTCTTTTCCTTCC
Found at i:28420572 original size:27 final size:27
Alignment explanation
Indices: 28420508--28420585 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
28420498 GAAAAATCAG
28420508 ACCATTGGCGCCTCTCAG-TATGGCACC
1 ACCATTGGCGCCTCTCAGATA-GGCACC
** * * *
28420535 AATAATAGCGCCTCCCAGATAGGCACC
1 ACCATTGGCGCCTCTCAGATAGGCACC
*
28420562 ACCATTGGCGCCTCTGAGATAGGC
1 ACCATTGGCGCCTCTCAGATAGGC
28420586 GCCAATACTA
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
27 37 0.95
28 2 0.05
ACGTcount: A:0.24, C:0.33, G:0.23, T:0.19
Consensus pattern (27 bp):
ACCATTGGCGCCTCTCAGATAGGCACC
Found at i:28422118 original size:21 final size:21
Alignment explanation
Indices: 28422067--28422118 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
28422057 TCTATATAAT
* * *
28422067 AAATAAAATTTAAAAGCTAAA
1 AAATCAAATTTAAAACCGAAA
*
28422088 AAAACTAAATTTAAAACCGAAA
1 AAATC-AAATTTAAAACCGAAA
28422110 AAATCAAAT
1 AAATCAAAT
28422119 CTTGGAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.65, C:0.10, G:0.04, T:0.21
Consensus pattern (21 bp):
AAATCAAATTTAAAACCGAAA
Found at i:28422457 original size:75 final size:74
Alignment explanation
Indices: 28422315--28422572 Score: 224
Period size: 75 Copynumber: 3.5 Consensus size: 74
28422305 CCACATCCTT
* * * *
28422315 ACCCATCTCTTTAGCA-TTTGAAGAATCTTCTGTAAGCTTTGACATCAATTCAACGTTCTCCTTC
1 ACCCATCTCTTTAGCACTTGGAA-AATCTTCTATAAGCTTTGATATCAATTCAAC-TTCTCCTCC
*
28422379 TCCATATTCATG
64 TCCATATT-ACG
* * * * *
28422391 -TCTATCTCTTTAGCACTCGGAAAATCTTCTATACGCTTTGATATCAATTCGA-TTCTCCACTCC
1 ACCCATCTCTTTAGCACTTGGAAAATCTTCTATAAGCTTTGATATCAATTCAACTTCT-C-CTCC
28422454 TCCATATTACG
64 TCCATATTACG
* * * * * *
28422465 ACCCATCTCTTTAGGACTTGTAGAATCTTCTATAAGCTTTGGTAACAATTCAA-TGT-TCAT-CT
1 ACCCATCTCTTTAGCACTTGGAAAATCTTCTATAAGCTTTGATATCAATTCAACT-TCTCCTCCT
* *
28422527 CCATAGT-CTT
65 CCATATTAC-G
* *
28422537 ACCCATCTCTTTAGCACTTGTAGAATCTTCTATAAG
1 ACCCATCTCTTTAGCACTTGGAAAATCTTCTATAAG
28422573 ATATGGTAGC
Statistics
Matches: 152, Mismatches: 24, Indels: 16
0.79 0.12 0.08
Matches are distributed among these distances:
71 1 0.01
72 43 0.28
73 5 0.03
74 4 0.03
75 94 0.62
76 5 0.03
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.38
Consensus pattern (74 bp):
ACCCATCTCTTTAGCACTTGGAAAATCTTCTATAAGCTTTGATATCAATTCAACTTCTCCTCCTC
CATATTACG
Found at i:28422556 original size:72 final size:74
Alignment explanation
Indices: 28422312--28422661 Score: 300
Period size: 72 Copynumber: 4.8 Consensus size: 74
28422302 CTGCCACATC
* * * ** * * *
28422312 CTTACCCATCTCTTTAGCATTTGAAGAATCTTCTGTAAGCTTTGACATCAATTCAACGTTCTCCT
1 CTTACCCATCTCTTTAGCACTTGTAGAATCTTCTATAAGCTTTGGTAGCAATTCAATG-TCTCCA
28422377 TCTCCATATT
65 TCTCCATATT
* ** * * * * * * * *
28422387 CATGTCTATCTCTTTAGCACTCGGAAAATCTTCTATACGCTTTGATATCAATTCGAT-TCTCCAC
1 CTTACCCATCTCTTTAGCACTTGTAGAATCTTCTATAAGCTTTGGTAGCAATTCAATGTCTCCA-
28422451 TCCTCCATATT
65 T-CTCCATATT
* * *
28422462 AC-GACCCATCTCTTTAGGACTTGTAGAATCTTCTATAAGCTTTGGTAACAATTCAATGT-T-CA
1 -CTTACCCATCTCTTTAGCACTTGTAGAATCTTCTATAAGCTTTGGTAGCAATTCAATGTCTCCA
*
28422524 TCTCCATAGT
65 TCTCCATATT
* * * *
28422534 CTTACCCATCTCTTTAGCACTTGTAGAATCTTCTATAAGATATGGTAGCAATTCAGTGT-T-CAC
1 CTTACCCATCTCTTTAGCACTTGTAGAATCTTCTATAAGCTTTGGTAGCAATTCAATGTCTCCAT
*
28422597 CTGCATATT
66 CTCCATATT
* * * * * *
28422606 CGTACCCATC-CTGTTGGCAATTGTAGAACCATCTAAAAGCTTTGGTAGCAATTCAA
1 CTTACCCATCTCT-TTAGCACTTGTAGAATCTTCTATAAGCTTTGGTAGCAATTCAA
28422662 CGCCCATCTC
Statistics
Matches: 224, Mismatches: 45, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
71 3 0.01
72 113 0.50
73 6 0.03
74 3 0.01
75 97 0.43
76 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.37
Consensus pattern (74 bp):
CTTACCCATCTCTTTAGCACTTGTAGAATCTTCTATAAGCTTTGGTAGCAATTCAATGTCTCCAT
CTCCATATT
Found at i:28428485 original size:23 final size:22
Alignment explanation
Indices: 28428459--28428502 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
28428449 GTATTATATC
* *
28428459 ATTATATGAAATTTTTAAAAAAG
1 ATTATAT-AAATTCTCAAAAAAG
28428482 ATTATATAAATTCTCAAAAAA
1 ATTATATAAATTCTCAAAAAA
28428503 ATAAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (22 bp):
ATTATATAAATTCTCAAAAAAG
Found at i:28431199 original size:10 final size:10
Alignment explanation
Indices: 28431184--28431214 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
28431174 AATATAGGTC
28431184 GAAGTTTGGT
1 GAAGTTTGGT
28431194 GAAGTTTGGT
1 GAAGTTTGGT
*
28431204 GGAGTTTGGT
1 GAAGTTTGGT
28431214 G
1 G
28431215 CAATTAACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.39
Consensus pattern (10 bp):
GAAGTTTGGT
Found at i:28432622 original size:13 final size:13
Alignment explanation
Indices: 28432606--28432630 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28432596 TTAAAGCTTT
28432606 TTTTTAATTAATG
1 TTTTTAATTAATG
28432619 TTTTTAATTAAT
1 TTTTTAATTAAT
28432631 AAATATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:28433721 original size:49 final size:49
Alignment explanation
Indices: 28433649--28433742 Score: 170
Period size: 49 Copynumber: 1.9 Consensus size: 49
28433639 TGCTATGCAA
*
28433649 TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCACTATTTATATAT
1 TGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATATAT
*
28433698 TGCTAAGCTTAGTCTTCCACTGTCTACACTCTTATCACTATTTAT
1 TGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTAT
28433743 CCATTCTTGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.23, C:0.26, G:0.09, T:0.43
Consensus pattern (49 bp):
TGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATATAT
Found at i:28436035 original size:14 final size:14
Alignment explanation
Indices: 28436016--28436061 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
28436006 TAGTCGTGCG
28436016 TTCTTTCCTTCTT-T
1 TTCTTTCCTT-TTCT
28436030 TTCTTT--TTTTCT
1 TTCTTTCCTTTTCT
28436042 TTCTTTCCTTTTCT
1 TTCTTTCCTTTTCT
28436056 TTCTTT
1 TTCTTT
28436062 TCTAATTTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.07
12 9 0.31
14 18 0.62
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (14 bp):
TTCTTTCCTTTTCT
Found at i:28436044 original size:22 final size:23
Alignment explanation
Indices: 28436016--28436064 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
28436006 TAGTCGTGCG
*
28436016 TTCTTTCCTTCTTTTTCTTT-TT
1 TTCTTTCCTTCCTTTTCTTTCTT
*
28436038 TTCTTTCTTTCCTTTTCTTTCTT
1 TTCTTTCCTTCCTTTTCTTTCTT
28436061 TTCT
1 TTCT
28436065 AATTTGCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (23 bp):
TTCTTTCCTTCCTTTTCTTTCTT
Found at i:28436045 original size:18 final size:18
Alignment explanation
Indices: 28436016--28436061 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
28436006 TAGTCGTGCG
* *
28436016 TTCTTTCCTTCTTTTTCTT
1 TTCTTTCTTTC-TTTCCTT
28436035 TT-TTTCTTTCTTTCCTT
1 TTCTTTCTTTCTTTCCTT
28436052 TTCTTTCTTT
1 TTCTTTCTTT
28436062 TCTAATTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 8 0.33
18 14 0.58
19 2 0.08
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (18 bp):
TTCTTTCTTTCTTTCCTT
Found at i:28436605 original size:13 final size:14
Alignment explanation
Indices: 28436572--28436609 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
28436562 AAAATAAATG
28436572 ATTTTTTATAATAT
1 ATTTTTTATAATAT
* *
28436586 ATATTTTA-ATTAT
1 ATTTTTTATAATAT
28436599 ATTTTTTATAA
1 ATTTTTTATAA
28436610 AATAATATGA
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
ATTTTTTATAATAT
Found at i:28436840 original size:16 final size:17
Alignment explanation
Indices: 28436825--28436856 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
28436815 TAATTTTTTA
28436825 AATAA-TTAAT-AATTT
1 AATAACTTAATCAATTT
28436840 AATAACTTAATCAATTT
1 AATAACTTAATCAATTT
28436857 TCTACCATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 5 0.33
17 5 0.33
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
AATAACTTAATCAATTT
Found at i:28438508 original size:14 final size:14
Alignment explanation
Indices: 28438489--28438534 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
28438479 TAGTCGTGCG
28438489 TTCTTTCCTTCTT-T
1 TTCTTTCCTT-TTCT
28438503 TTCTTT--TTTTCT
1 TTCTTTCCTTTTCT
28438515 TTCTTTCCTTTTCT
1 TTCTTTCCTTTTCT
28438529 TTCTTT
1 TTCTTT
28438535 TCTAATTTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.07
12 9 0.31
14 18 0.62
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (14 bp):
TTCTTTCCTTTTCT
Found at i:28438517 original size:22 final size:23
Alignment explanation
Indices: 28438489--28438537 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
28438479 TAGTCGTGCG
*
28438489 TTCTTTCCTTCTTTTTCTTT-TT
1 TTCTTTCCTTCCTTTTCTTTCTT
*
28438511 TTCTTTCTTTCCTTTTCTTTCTT
1 TTCTTTCCTTCCTTTTCTTTCTT
28438534 TTCT
1 TTCT
28438538 AATTTGCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (23 bp):
TTCTTTCCTTCCTTTTCTTTCTT
Found at i:28438518 original size:18 final size:18
Alignment explanation
Indices: 28438489--28438534 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
28438479 TAGTCGTGCG
* *
28438489 TTCTTTCCTTCTTTTTCTT
1 TTCTTTCTTTC-TTTCCTT
28438508 TT-TTTCTTTCTTTCCTT
1 TTCTTTCTTTCTTTCCTT
28438525 TTCTTTCTTT
1 TTCTTTCTTT
28438535 TCTAATTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 8 0.33
18 14 0.58
19 2 0.08
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (18 bp):
TTCTTTCTTTCTTTCCTT
Found at i:28439078 original size:13 final size:14
Alignment explanation
Indices: 28439045--28439082 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
28439035 AAAATAAATG
28439045 ATTTTTTATAATAT
1 ATTTTTTATAATAT
* *
28439059 ATATTTTA-ATTAT
1 ATTTTTTATAATAT
28439072 ATTTTTTATAA
1 ATTTTTTATAA
28439083 AATAATATGA
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
ATTTTTTATAATAT
Found at i:28439313 original size:16 final size:17
Alignment explanation
Indices: 28439298--28439329 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
28439288 TAATTTTTTA
28439298 AATAA-TTAAT-AATTT
1 AATAACTTAATCAATTT
28439313 AATAACTTAATCAATTT
1 AATAACTTAATCAATTT
28439330 TCTACCATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 5 0.33
17 5 0.33
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
AATAACTTAATCAATTT
Found at i:28441797 original size:646 final size:646
Alignment explanation
Indices: 28440567--28441858 Score: 2584
Period size: 646 Copynumber: 2.0 Consensus size: 646
28440557 TTAAGTAAAA
28440567 GGACTAAATCGTATAAAGTGTAAAAGTAGAGTTCTATTAGTTAAAAGGGTCAAATGGTTATGAAA
1 GGACTAAATCGTATAAAGTGTAAAAGTAGAGTTCTATTAGTTAAAAGGGTCAAATGGTTATGAAA
28440632 CTTTAAAATTAAGGACTTGGATGGTAAATAAACCAATTGAGGTGATAGTGGATGTTTATGGACAT
66 CTTTAAAATTAAGGACTTGGATGGTAAATAAACCAATTGAGGTGATAGTGGATGTTTATGGACAT
28440697 GGTTTTGATGAAATTATTAAAGTTTTTAAAGGTTAAAATTGTAATTAGGTAATTAAGGTTAAAAC
131 GGTTTTGATGAAATTATTAAAGTTTTTAAAGGTTAAAATTGTAATTAGGTAATTAAGGTTAAAAC
28440762 AAAACAAAAGAAAATAGTATCATCTTCTTTAGTTTGATTCTCCACCGAAATTAGGGATAGGAAAC
196 AAAACAAAAGAAAATAGTATCATCTTCTTTAGTTTGATTCTCCACCGAAATTAGGGATAGGAAAC
28440827 TCAATTTTTGAAGTTTGAAGGTTATCTCAAGCTTCTTTACTTGCATGGTATGATTTTCAATCCCG
261 TCAATTTTTGAAGTTTGAAGGTTATCTCAAGCTTCTTTACTTGCATGGTATGATTTTCAATCCCG
28440892 TTTTTAATGATTTCTATGTTTTTGAAGTCATTTTAGCTTAATCTACCTAGCCCAGGGGTCAATTT
326 TTTTTAATGATTTCTATGTTTTTGAAGTCATTTTAGCTTAATCTACCTAGCCCAGGGGTCAATTT
28440957 GTAAAACAGTTAAAGATTTAAGGTTATGCCATGAATGTTCTTGAGTGGTTCTTGATGTTAAATGC
391 GTAAAACAGTTAAAGATTTAAGGTTATGCCATGAATGTTCTTGAGTGGTTCTTGATGTTAAATGC
28441022 TAGATTATGAACCTTTGTTGATAAGTAAACAAGTTTTACAAAGTGATTTTTGATGAATTTTGGAA
456 TAGATTATGAACCTTTGTTGATAAGTAAACAAGTTTTACAAAGTGATTTTTGATGAATTTTGGAA
28441087 ATTAGAGACTAAATTGTTAAAGGTATGAATACTAGGGTTTTAATGTGAAATGATGATAAAAATGG
521 ATTAGAGACTAAATTGTTAAAGGTATGAATACTAGGGTTTTAATGTGAAATGATGATAAAAATGG
28441152 GTTGTTTCAAGGTCTCTTTCATGTTTAGTTAACATGGATTTTGATTAAAATGGTTAGATTT
586 GTTGTTTCAAGGTCTCTTTCATGTTTAGTTAACATGGATTTTGATTAAAATGGTTAGATTT
28441213 GGACTAAATCGTATAAAGTGTAAAAGTAGAGTTCTATTAGTTAAAAGGGTCAAATGGTTATGAAA
1 GGACTAAATCGTATAAAGTGTAAAAGTAGAGTTCTATTAGTTAAAAGGGTCAAATGGTTATGAAA
28441278 CTTTAAAATTAAGGACTTGGATGGTAAATAAACCAATTGAGGTGATAGTGGATGTTTATGGACAT
66 CTTTAAAATTAAGGACTTGGATGGTAAATAAACCAATTGAGGTGATAGTGGATGTTTATGGACAT
28441343 GGTTTTGATGAAATTATTAAAGTTTTTAAAGGTTAAAATTGTAATTAGGTAATTAAGGTTAAAAC
131 GGTTTTGATGAAATTATTAAAGTTTTTAAAGGTTAAAATTGTAATTAGGTAATTAAGGTTAAAAC
28441408 AAAACAAAAGAAAATAGTATCATCTTCTTTAGTTTGATTCTCCACCGAAATTAGGGATAGGAAAC
196 AAAACAAAAGAAAATAGTATCATCTTCTTTAGTTTGATTCTCCACCGAAATTAGGGATAGGAAAC
28441473 TCAATTTTTGAAGTTTGAAGGTTATCTCAAGCTTCTTTACTTGCATGGTATGATTTTCAATCCCG
261 TCAATTTTTGAAGTTTGAAGGTTATCTCAAGCTTCTTTACTTGCATGGTATGATTTTCAATCCCG
28441538 TTTTTAATGATTTCTATGTTTTTGAAGTCATTTTAGCTTAATCTACCTAGCCCAGGGGTCAATTT
326 TTTTTAATGATTTCTATGTTTTTGAAGTCATTTTAGCTTAATCTACCTAGCCCAGGGGTCAATTT
28441603 GTAAAACAGTTAAAGATTTAAGGTTATGCCATGAATGTTCTTGAGTGGTTCTTGATGTTAAATGC
391 GTAAAACAGTTAAAGATTTAAGGTTATGCCATGAATGTTCTTGAGTGGTTCTTGATGTTAAATGC
28441668 TAGATTATGAACCTTTGTTGATAAGTAAACAAGTTTTACAAAGTGATTTTTGATGAATTTTGGAA
456 TAGATTATGAACCTTTGTTGATAAGTAAACAAGTTTTACAAAGTGATTTTTGATGAATTTTGGAA
28441733 ATTAGAGACTAAATTGTTAAAGGTATGAATACTAGGGTTTTAATGTGAAATGATGATAAAAATGG
521 ATTAGAGACTAAATTGTTAAAGGTATGAATACTAGGGTTTTAATGTGAAATGATGATAAAAATGG
28441798 GTTGTTTCAAGGTCTCTTTCATGTTTAGTTAACATGGATTTTGATTAAAATGGTTAGATTT
586 GTTGTTTCAAGGTCTCTTTCATGTTTAGTTAACATGGATTTTGATTAAAATGGTTAGATTT
28441859 TAAGTTATTA
Statistics
Matches: 646, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
646 646 1.00
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (646 bp):
GGACTAAATCGTATAAAGTGTAAAAGTAGAGTTCTATTAGTTAAAAGGGTCAAATGGTTATGAAA
CTTTAAAATTAAGGACTTGGATGGTAAATAAACCAATTGAGGTGATAGTGGATGTTTATGGACAT
GGTTTTGATGAAATTATTAAAGTTTTTAAAGGTTAAAATTGTAATTAGGTAATTAAGGTTAAAAC
AAAACAAAAGAAAATAGTATCATCTTCTTTAGTTTGATTCTCCACCGAAATTAGGGATAGGAAAC
TCAATTTTTGAAGTTTGAAGGTTATCTCAAGCTTCTTTACTTGCATGGTATGATTTTCAATCCCG
TTTTTAATGATTTCTATGTTTTTGAAGTCATTTTAGCTTAATCTACCTAGCCCAGGGGTCAATTT
GTAAAACAGTTAAAGATTTAAGGTTATGCCATGAATGTTCTTGAGTGGTTCTTGATGTTAAATGC
TAGATTATGAACCTTTGTTGATAAGTAAACAAGTTTTACAAAGTGATTTTTGATGAATTTTGGAA
ATTAGAGACTAAATTGTTAAAGGTATGAATACTAGGGTTTTAATGTGAAATGATGATAAAAATGG
GTTGTTTCAAGGTCTCTTTCATGTTTAGTTAACATGGATTTTGATTAAAATGGTTAGATTT
Found at i:28447344 original size:40 final size:41
Alignment explanation
Indices: 28447257--28447344 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 41
28447247 ATACAAATTA
* ** *
28447257 CCTGATACAGCACACCGACACAAAGCCTGCTAGGCTCAAGG
1 CCTGATACAGCACACCGACACAAAACCTGCTAGGAACAAAG
* * * *
28447298 CTTGATACA-TACACCGGCATAAAACCTGCTAGGAACAAAG
1 CCTGATACAGCACACCGACACAAAACCTGCTAGGAACAAAG
28447338 CCTGATA
1 CCTGATA
28447345 TGACATACTG
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
40 30 0.79
41 8 0.21
ACGTcount: A:0.35, C:0.30, G:0.19, T:0.16
Consensus pattern (41 bp):
CCTGATACAGCACACCGACACAAAACCTGCTAGGAACAAAG
Found at i:28447381 original size:16 final size:16
Alignment explanation
Indices: 28447360--28447397 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
28447350 TACTGGAACG
28447360 AAGCCTGCTAGACTTA
1 AAGCCTGCTAGACTTA
28447376 AAGCCTGCTAGACTTA
1 AAGCCTGCTAGACTTA
28447392 AAGCCT
1 AAGCCT
28447398 AATTCCACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (16 bp):
AAGCCTGCTAGACTTA
Found at i:28448697 original size:28 final size:28
Alignment explanation
Indices: 28448595--28448704 Score: 112
Period size: 30 Copynumber: 3.8 Consensus size: 28
28448585 AACATGCAGA
* * *
28448595 ATCAGTCTGGGCCTGAGCCCTATACAAT
1 ATCAGTGTGGGCCTTAGCCCAATACAAT
* * *
28448623 AGCAGTGTGTGGGTCATAGCCCAATACAAT
1 ATCA--GTGTGGGCCTTAGCCCAATACAAT
* *
28448653 AACAGAGTGTGGGCCTTAGCCCAATACAGT
1 ATC--AGTGTGGGCCTTAGCCCAATACAAT
28448683 ATCAGTGTGGGCCTTAGCCCAA
1 ATCAGTGTGGGCCTTAGCCCAA
28448705 AAAAATATTC
Statistics
Matches: 67, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 22 0.33
30 44 0.66
32 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (28 bp):
ATCAGTGTGGGCCTTAGCCCAATACAAT
Found at i:28448854 original size:26 final size:26
Alignment explanation
Indices: 28448824--28448918 Score: 111
Period size: 26 Copynumber: 3.7 Consensus size: 26
28448814 ATACCAATAT
28448824 CGCAGCAAAGCTGCCAGTAATAGTAA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
* * *
28448850 TGCAGCAAAGCTGCCAATAACAGTAA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
* * * *
28448876 CGCAACAGAGCTACCAGT-ATCGGTAA
1 CGCAGCAAAGCTGCCAGTAAT-AGTAA
28448902 CGCAGCAAAGCTGCCAG
1 CGCAGCAAAGCTGCCAG
28448919 CAACAGTATT
Statistics
Matches: 55, Mismatches: 13, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
25 1 0.02
26 54 0.98
ACGTcount: A:0.37, C:0.26, G:0.23, T:0.14
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAATAGTAA
Found at i:28449140 original size:27 final size:27
Alignment explanation
Indices: 28449110--28449213 Score: 93
Period size: 27 Copynumber: 3.9 Consensus size: 27
28449100 CATTTCCTTG
*
28449110 GGGTATAATGGTCATTTTACCCTATAA
1 GGGTATTATGGTCATTTTACCCTATAA
* * * *
28449137 GGGTATTACGGTCATTCTACCCTTTAG
1 GGGTATTATGGTCATTTTACCCTATAA
* * * *
28449164 GGGTATTTTGGTAATTTTTCCC-ATCGA
1 GGGTATTATGGTCATTTTACCCTAT-AA
* *
28449191 GGGTATTTTGATCATTTTACCCT
1 GGGTATTATGGTCATTTTACCCT
28449214 TCGAGAGTAT
Statistics
Matches: 59, Mismatches: 16, Indels: 3
0.76 0.21 0.04
Matches are distributed among these distances:
26 1 0.02
27 58 0.98
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTATGGTCATTTTACCCTATAA
Found at i:28449181 original size:54 final size:54
Alignment explanation
Indices: 28449109--28449522 Score: 264
Period size: 54 Copynumber: 7.7 Consensus size: 54
28449099 TCATTTCCTT
** * * *
28449109 GGGGTATAATGGTCATTTTACCCTAT-AAGGGTATTACGGTCATTCTACCCTTTA
1 GGGGTATTTTGGTAATTTTACCC-ATCAAGGGTATTTCGGTCATTTTACCCTTTA
* * * * *
28449163 GGGGTATTTTGGTAATTTTTCCCATCGAGGGTATTTTGATCATTTTACCC-TTC
1 GGGGTATTTTGGTAATTTTACCCATCAAGGGTATTTCGGTCATTTTACCCTTTA
* *** * *
28449216 GAGAGTATTTCAATAATTTTACCCATCGAGGATATTTCGGTCATTTTACCCTTTA
1 G-GGGTATTTTGGTAATTTTACCCATCAAGGGTATTTCGGTCATTTTACCCTTTA
* * * **
28449271 -GGGTATTTAGGTAATTTTACCCATCTAGGGTATTTCGGTAATTTTACCCTTCG
1 GGGGTATTTTGGTAATTTTACCCATCAAGGGTATTTCGGTCATTTTACCCTTTA
* * * * * * * * * *
28449324 GGGGTATTTCGATAAGTTTACCCTTCAAAGGTATTTCAGTAATATTACCCATCA
1 GGGGTATTTTGGTAATTTTACCCATCAAGGGTATTTCGGTCATTTTACCCTTTA
* * ** * ** * *
28449378 AGGGTATTTTAGTAATTTTACCTTTC-AGAGGTATTTCAGAAATTTTA-CCTGTC
1 GGGGTATTTTGGTAATTTTACCCATCAAG-GGTATTTCGGTCATTTTACCCTTTA
* * ** ** * *
28449431 GAGGGTATTTCGGTAATCTTACCTTTTGAGGGTATTTCGGTAATTTTACCCATT-
1 G-GGGTATTTTGGTAATTTTACCCATCAAGGGTATTTCGGTCATTTTACCCTTTA
* ** * *
28449485 GAAGGTATTTCAGTAATCTTACCCTTCAAGGGTATTTC
1 G-GGGTATTTTGGTAATTTTACCCATCAAGGGTATTTC
28449523 AGTAAATTAC
Statistics
Matches: 287, Mismatches: 65, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
53 52 0.18
54 228 0.79
55 7 0.02
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (54 bp):
GGGGTATTTTGGTAATTTTACCCATCAAGGGTATTTCGGTCATTTTACCCTTTA
Found at i:28449217 original size:27 final size:27
Alignment explanation
Indices: 28449164--28449557 Score: 295
Period size: 27 Copynumber: 14.7 Consensus size: 27
28449154 TACCCTTTAG
* * * *
28449164 GGGTATTTTGGTAATTTTTCCCATCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* *
28449191 GGGTATTTTGATCATTTTACCCTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* * *
28449218 GAGTATTTCAATAATTTTACCCATCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* * * *
28449245 GGATATTTCGGTCATTTTACCCTT-TA
1 GGGTATTTCGATAATTTTACCCTTCGA
* * * *
28449271 GGGTATTTAGGTAATTTTACCCATCTA
1 GGGTATTTCGATAATTTTACCCTTCGA
* *
28449298 GGGTATTTCGGTAATTTTACCCTTCGG
1 GGGTATTTCGATAATTTTACCCTTCGA
* *
28449325 GGGTATTTCGATAAGTTTACCCTTCAA
1 GGGTATTTCGATAATTTTACCCTTCGA
* * * *
28449352 AGGTATTTC-AGTAATATTACCCATCAA
1 GGGTATTTCGA-TAATTTTACCCTTCGA
* *
28449379 GGGTATTT-TAGTAATTTTACCTTTC-A
1 GGGTATTTCGA-TAATTTTACCCTTCGA
28449405 GAGGTATTTCAGA-AATTTTA-CCTGTCGA
1 G-GGTATTTC-GATAATTTTACCCT-TCGA
* * * *
28449433 GGGTATTTCGGTAATCTTACCTTTTGA
1 GGGTATTTCGATAATTTTACCCTTCGA
*
28449460 GGGTATTTCGGTAATTTTACCCATT-GA
1 GGGTATTTCGATAATTTTACCC-TTCGA
* * *
28449487 AGGTATTTC-AGTAATCTTACCCTTCAA
1 GGGTATTTCGA-TAATTTTACCCTTCGA
* * *
28449514 GGGTATTTC-AGTAA-ATTACCTTTTGA
1 GGGTATTTCGA-TAATTTTACCCTTCGA
*
28449540 GGGTATTTCCATAATTTT
1 GGGTATTTCGATAATTTT
28449558 CCCAAGAATC
Statistics
Matches: 298, Mismatches: 54, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
26 49 0.16
27 242 0.81
28 6 0.02
29 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACCCTTCGA
Found at i:28452758 original size:18 final size:17
Alignment explanation
Indices: 28452711--28452758 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
28452701 TGTCATTCGT
*
28452711 TTTCAAAACATTATTCA
1 TTTCAAAACGTTATTCA
*
28452728 TTTACAAATCGTTATTCAA
1 TTT-CAAAACGTTATTC-A
28452747 TTTCAAAACGTT
1 TTTCAAAACGTT
28452759 TTTTTATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 3 0.12
18 19 0.73
19 4 0.15
ACGTcount: A:0.38, C:0.17, G:0.04, T:0.42
Consensus pattern (17 bp):
TTTCAAAACGTTATTCA
Found at i:28456744 original size:21 final size:21
Alignment explanation
Indices: 28456719--28456758 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
28456709 CATTCTTGAT
* *
28456719 AATAATTAATAATATTGATTA
1 AATAATAAATAATAGTGATTA
28456740 AATAATAAATAATAGTGAT
1 AATAATAAATAATAGTGAT
28456759 ATTTTAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (21 bp):
AATAATAAATAATAGTGATTA
Found at i:28457562 original size:23 final size:22
Alignment explanation
Indices: 28457522--28457567 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
28457512 TATTAGAACT
*
28457522 TGTGATTATTATGATGATTGATA
1 TGTGAATATTATGATGATT-ATA
28457545 TGTGAATATGTATG-TGATTATA
1 TGTGAATAT-TATGATGATTATA
28457567 T
1 T
28457568 TTGTGTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 13 0.62
24 4 0.19
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (22 bp):
TGTGAATATTATGATGATTATA
Found at i:28460133 original size:23 final size:23
Alignment explanation
Indices: 28460084--28460133 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
28460074 AATCTGTTGG
* *
28460084 TTTTTTTTACTGTTTTGTTGCTT
1 TTTTTTTTACTGTTTTCTTGCTA
*
28460107 TTTTTTTTACTGTTTTCTTGGTA
1 TTTTTTTTACTGTTTTCTTGCTA
28460130 TTTT
1 TTTT
28460134 CTTGTTGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.06, C:0.08, G:0.12, T:0.74
Consensus pattern (23 bp):
TTTTTTTTACTGTTTTCTTGCTA
Found at i:28460542 original size:23 final size:23
Alignment explanation
Indices: 28460512--28460561 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
28460502 AATAGATACT
28460512 AATTGCTTTTGGGGTAGGACCAA
1 AATTGCTTTTGGGGTAGGACCAA
28460535 AATTGCTTTTGGGGTAGGACCAA
1 AATTGCTTTTGGGGTAGGACCAA
28460558 AATT
1 AATT
28460562 TTAGCCCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.32
Consensus pattern (23 bp):
AATTGCTTTTGGGGTAGGACCAA
Found at i:28477869 original size:32 final size:32
Alignment explanation
Indices: 28477833--28477907 Score: 123
Period size: 32 Copynumber: 2.3 Consensus size: 32
28477823 GATTGCAAAA
* *
28477833 AGCCATCAGTAGTAGTGATATGGTCGGCACAC
1 AGCCATCAGTAGCAGTGATATGATCGGCACAC
*
28477865 AGCCATCAGTAGCAGTGATATGATCGGTACAC
1 AGCCATCAGTAGCAGTGATATGATCGGCACAC
28477897 AGCCATCAGTA
1 AGCCATCAGTA
28477908 ATGGTAACAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (32 bp):
AGCCATCAGTAGCAGTGATATGATCGGCACAC
Found at i:28477920 original size:32 final size:31
Alignment explanation
Indices: 28477856--28478035 Score: 130
Period size: 32 Copynumber: 5.6 Consensus size: 31
28477846 AGTGATATGG
* * * *
28477856 TCGGCACACAGCCATCAGTAGCAGTGATATGA
1 TCGGCACAAAGCCATCAGTAACGGT-ACATGA
* * *
28477888 TCGGTACACAGCCATCAGTAATGGTAACATGA
1 TCGGCACAAAGCCATCAGTAACGGT-ACATGA
* * * * *
28477920 TCGGTCTA-TAA-CCATCGGTAACGATAATATAA
1 TCGG-C-ACAAAGCCATCAGTAACGGT-ACATGA
* *
28477952 TCTGTACAAAGCCATCAGTAACGGTACTATGA
1 TCGGCACAAAGCCATCAGTAACGGTAC-ATGA
** *
28477984 TTAGCACAAAGCCACCAGTAACGGTACTATGA
1 TCGGCACAAAGCCATCAGTAACGGTAC-ATGA
28478016 TCGGCACAAAGCCATCAGTA
1 TCGGCACAAAGCCATCAGTA
28478036 GCATCGTAGC
Statistics
Matches: 115, Mismatches: 28, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
30 1 0.01
31 3 0.03
32 109 0.95
33 1 0.01
34 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (31 bp):
TCGGCACAAAGCCATCAGTAACGGTACATGA
Found at i:28478353 original size:27 final size:27
Alignment explanation
Indices: 28478310--28478498 Score: 195
Period size: 27 Copynumber: 7.1 Consensus size: 27
28478300 AAAATAATCA
*
28478310 TTTACCC-ACTAGGGCATTACGGTCAT
1 TTTACCCTACAAGGGCATTACGGTCAT
**
28478336 TTTACCCTACAAGGGCATTACGAACAT
1 TTTACCCTACAAGGGCATTACGGTCAT
* * * ** *
28478363 TTTACCCTATAGGGGTATTATAGTTAT
1 TTTACCCTACAAGGGCATTACGGTCAT
* *
28478390 TTTACCCTACAGGGGCATTATGGTCAT
1 TTTACCCTACAAGGGCATTACGGTCAT
28478417 TTTACCCTACAAGGGCATTACGGTCAT
1 TTTACCCTACAAGGGCATTACGGTCAT
* ** *
28478444 TTTACCCTA-TAGTCTCATTACAGTCAT
1 TTTACCCTACAAG-GGCATTACGGTCAT
**
28478471 TTTACCCTAC-AGGGTGTTACGGTCAT
1 TTTACCCTACAAGGGCATTACGGTCAT
28478497 TT
1 TT
28478499 CATCCTATGG
Statistics
Matches: 134, Mismatches: 26, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
26 20 0.15
27 114 0.85
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (27 bp):
TTTACCCTACAAGGGCATTACGGTCAT
Found at i:28478415 original size:81 final size:81
Alignment explanation
Indices: 28478321--28478498 Score: 254
Period size: 81 Copynumber: 2.2 Consensus size: 81
28478311 TTACCCACTA
* *
28478321 GGGCATTACGGTCATTTTACCCTACAAGGGCATTACGAACATTTTACCCTATAGGGGT-ATTATA
1 GGGCATTACGGTCATTTTACCCTACAAGGGCATTACGAACATTTTACCCTATA-GGCTCATTACA
*
28478385 GTTATTTTACCCTACAG
65 GTCATTTTACCCTACAG
* ** *
28478402 GGGCATTATGGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTATAGTCTCATTACAG
1 GGGCATTACGGTCATTTTACCCTACAAGGGCATTACGAACATTTTACCCTATAGGCTCATTACAG
28478467 TCATTTTACCCTACAG
66 TCATTTTACCCTACAG
28478483 GGTG--TTACGGTCATTT
1 GG-GCATTACGGTCATTT
28478499 CATCCTATGG
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
80 13 0.15
81 73 0.84
82 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (81 bp):
GGGCATTACGGTCATTTTACCCTACAAGGGCATTACGAACATTTTACCCTATAGGCTCATTACAG
TCATTTTACCCTACAG
Found at i:28481370 original size:35 final size:34
Alignment explanation
Indices: 28481280--28481370 Score: 87
Period size: 35 Copynumber: 2.6 Consensus size: 34
28481270 ACTTTCGTTA
*
28481280 GTTTATCTGACTA-ATGCTGGGCACACATTCATCG
1 GTTTATCTGACTAGA-GCTGGGCACAAATTCATCG
** * * *
28481314 GTTTATCCAACTAGCA-TTGGGCGCAAATATCATTG
1 GTTTATCTGACTAG-AGCTGGGCACAAAT-TCATCG
28481349 GTTTATCTGACTAGAGCTGGGC
1 GTTTATCTGACTAGAGCTGGGC
28481371 TCACTAATTA
Statistics
Matches: 44, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
34 21 0.48
35 22 0.50
36 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (34 bp):
GTTTATCTGACTAGAGCTGGGCACAAATTCATCG
Found at i:28481408 original size:40 final size:39
Alignment explanation
Indices: 28481348--28481518 Score: 188
Period size: 40 Copynumber: 4.4 Consensus size: 39
28481338 AAATATCATT
**
28481348 GGTTTATCTGACTAGAGCTGGGCTCACTAATTATTTCGTC
1 GGTTTATCCAACTAGAGCTGGGCTCACTAATTA-TTCGTC
* * * *
28481388 GGTTTATTCAACTAGCGCTGGGTTCACTAATTATTTCTTC
1 GGTTTATCCAACTAGAGCTGGGCTCACTAATTA-TTCGTC
** * * *
28481428 ACTTTATCCAACTAGCGCTGGGCGCA--AA-TA-TCGTT
1 GGTTTATCCAACTAGAGCTGGGCTCACTAATTATTCGTC
*
28481463 GGTTTATCCAACTAGAGCTGGGCTCACTAATTATTCGTT
1 GGTTTATCCAACTAGAGCTGGGCTCACTAATTATTCGTC
28481502 GGTTTATCCAACTAGAG
1 GGTTTATCCAACTAGAG
28481519 TTGAGCGCAA
Statistics
Matches: 110, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
35 25 0.23
37 4 0.04
38 4 0.04
39 22 0.20
40 55 0.50
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (39 bp):
GGTTTATCCAACTAGAGCTGGGCTCACTAATTATTCGTC
Found at i:28481544 original size:74 final size:75
Alignment explanation
Indices: 28481383--28481559 Score: 180
Period size: 74 Copynumber: 2.4 Consensus size: 75
28481373 ACTAATTATT
* * * * *
28481383 TCGTCGGTTTATTCAACTAGCGCTGGGTTCACTAATTATTTCTTCACTTTATCCAACTAGCGCTG
1 TCGTCAGTTTATCCAACTAGAGCTGGGCTCACTAATTATTTCTTCACTTTATCCAACTAGAGCTG
*
28481448 GGCGCAAATA
66 AGCGCAAATA
** ** *
28481458 TCGTTGGTTTATCCAACTAGAGCTGGGCTCACTAATTA-TTCGTT-GGTTTATCCAACTAGAGTT
1 TCGTCAGTTTATCCAACTAGAGCTGGGCTCACTAATTATTTC-TTCACTTTATCCAACTAGAGCT
*
28481521 GAGCGCAACT-
65 GAGCGCAAATA
** *
28481531 TCTGTCAGTTTATCTGACTAGTGCTGGGC
1 TC-GTCAGTTTATCCAACTAGAGCTGGGC
28481560 ACACATTTTT
Statistics
Matches: 85, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
73 2 0.02
74 47 0.55
75 36 0.42
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.35
Consensus pattern (75 bp):
TCGTCAGTTTATCCAACTAGAGCTGGGCTCACTAATTATTTCTTCACTTTATCCAACTAGAGCTG
AGCGCAAATA
Found at i:28485266 original size:9 final size:9
Alignment explanation
Indices: 28485247--28485283 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
28485237 TGCGTTTTCA
*
28485247 AATTTGAAT
1 AATTCGAAT
*
28485256 AACTCGAAT
1 AATTCGAAT
28485265 AATTCGAAT
1 AATTCGAAT
28485274 AATTCGAAT
1 AATTCGAAT
28485283 A
1 A
28485284 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:28486841 original size:35 final size:35
Alignment explanation
Indices: 28486809--28486993 Score: 114
Period size: 35 Copynumber: 5.2 Consensus size: 35
28486799 CTGACTAGCA
*
28486809 CTGGGCGCAAATATCGTTGGTTTATCCAACTAGAG
1 CTGGGCACAAATATCGTTGGTTTATCCAACTAGAG
* * * * *
28486844 CT---TACTAATTATTTCGTCGATTTATCCGACTAGCA-
1 CTGGGCAC-AA--ATATCGTTGGTTTATCCAACTAG-AG
*
28486879 CTGGGCAC-AATATCGTTGGTTTGTCCAACTAGAG
1 CTGGGCACAAATATCGTTGGTTTATCCAACTAGAG
* * *
28486913 CTGGGCTTACTAATTATTTCATCT-GTTTATCCGACTAGCAG
1 CTGGGC--AC-AA--ATATCGT-TGGTTTATCCAACTAG-AG
* *
28486954 -TGGGCGCAAATATCATTGGTTTATCCAACTAGAG
1 CTGGGCACAAATATCGTTGGTTTATCCAACTAGAG
28486988 CTGGGC
1 CTGGGC
28486994 TCACTAATTA
Statistics
Matches: 113, Mismatches: 19, Indels: 36
0.67 0.11 0.21
Matches are distributed among these distances:
32 1 0.01
33 3 0.03
34 27 0.24
35 47 0.42
36 4 0.04
37 2 0.02
38 4 0.04
40 22 0.19
41 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (35 bp):
CTGGGCACAAATATCGTTGGTTTATCCAACTAGAG
Found at i:28486948 original size:74 final size:75
Alignment explanation
Indices: 28486786--28487036 Score: 320
Period size: 74 Copynumber: 3.4 Consensus size: 75
28486776 CGGACACACA
** * *
28486786 TTCGTCGGCTTATCTGACTAGCACTGGGCGCAAATATCGTTGGTTTATCCAACTAGA-----GCT
1 TTCGTCGATTTATCCGACTAGCACTGGGCACAAATATCGTTGGTTTATCCAACTAGAGCTGGGCT
28486846 TACTAATTAT
66 TACTAATTAT
*
28486856 TTCGTCGATTTATCCGACTAGCACTGGGCAC-AATATCGTTGGTTTGTCCAACTAGAGCTGGGCT
1 TTCGTCGATTTATCCGACTAGCACTGGGCACAAATATCGTTGGTTTATCCAACTAGAGCTGGGCT
28486920 TACTAATTAT
66 TACTAATTAT
* * * *
28486930 TTCATCTG-TTTATCCGACTAGCAGTGGGCGCAAATATCATTGGTTTATCCAACTAGAGCTGGGC
1 TTCGTC-GATTTATCCGACTAGCACTGGGCACAAATATCGTTGGTTTATCCAACTAGAGCTGGGC
*
28486994 TCACTAATTA-
65 TTACTAATTAT
* * *
28487004 TTCGTCGATTTATCCAATTAGCATTGGGCACAA
1 TTCGTCGATTTATCCGACTAGCACTGGGCACAA
28487037 CTTCCATCAG
Statistics
Matches: 157, Mismatches: 16, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
69 24 0.15
70 27 0.17
73 1 0.01
74 65 0.41
75 40 0.25
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (75 bp):
TTCGTCGATTTATCCGACTAGCACTGGGCACAAATATCGTTGGTTTATCCAACTAGAGCTGGGCT
TACTAATTAT
Found at i:28487814 original size:97 final size:97
Alignment explanation
Indices: 28487685--28487881 Score: 367
Period size: 97 Copynumber: 2.0 Consensus size: 97
28487675 GTGCTCTCTT
* *
28487685 TTGGTCACCGACTCAGCATCCAACGACTATCTCGATCTCAAGTGTGGTGATGTTTAATTTTGTAA
1 TTGGTCACCGACTCAGCATCCAACGACGATCTCGATCTCAAGTGCGGTGATGTTTAATTTTGTAA
28487750 TGGCATGTACCTAGGATGTCTTTGCTTGTTAG
66 TGGCATGTACCTAGGATGTCTTTGCTTGTTAG
*
28487782 TTGGTCACCGACTCAGTATCCAACGACGATCTCGATCTCAAGTGCGGTGATGTTTAATTTTGTAA
1 TTGGTCACCGACTCAGCATCCAACGACGATCTCGATCTCAAGTGCGGTGATGTTTAATTTTGTAA
28487847 TGGCATGTACCTAGGATGTCTTTGCTTGTTAG
66 TGGCATGTACCTAGGATGTCTTTGCTTGTTAG
28487879 TTG
1 TTG
28487882 TTTTGCGAAT
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
97 97 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (97 bp):
TTGGTCACCGACTCAGCATCCAACGACGATCTCGATCTCAAGTGCGGTGATGTTTAATTTTGTAA
TGGCATGTACCTAGGATGTCTTTGCTTGTTAG
Found at i:28491880 original size:13 final size:13
Alignment explanation
Indices: 28491862--28491886 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28491852 CGTCACCACA
28491862 TTTCATTAAATAT
1 TTTCATTAAATAT
28491875 TTTCATTAAATA
1 TTTCATTAAATA
28491887 CTCGAGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTCATTAAATAT
Found at i:28499925 original size:16 final size:16
Alignment explanation
Indices: 28499886--28499925 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
28499876 AATATATATT
*
28499886 TATTTTTAATCAAATA
1 TATTTTTTATCAAATA
* *
28499902 TACTTTTTATTAAATA
1 TATTTTTTATCAAATA
28499918 TATTTTTT
1 TATTTTTT
28499926 TGGACTTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (16 bp):
TATTTTTTATCAAATA
Found at i:28503740 original size:99 final size:100
Alignment explanation
Indices: 28503559--28503761 Score: 383
Period size: 99 Copynumber: 2.0 Consensus size: 100
28503549 CTACACATAT
28503559 AAATTATGACCCATAATTATTTCTGTAAAATTTATAATGATTTTTCAAAGTCAGAACTGGGGACT
1 AAATTATGACCCATAATTATTTCTGTAAAATTTATAATGATTTTTCAAAGTCAGAACTGGGGACT
28503624 TCAAAAACCATTCTGACTCTATCTCA-CTAAAATTC
66 TCAAAAACCATTCTGACTCTATCTCACCT-AAATTC
28503659 AAATTATGA-CCATAATTATTTCTGTAAAATTTATAATGATTTTTCAAAGTCAGAACTGGGGACT
1 AAATTATGACCCATAATTATTTCTGTAAAATTTATAATGATTTTTCAAAGTCAGAACTGGGGACT
28503723 TCAAAAACCATTCTGACTCTATCTCACCTAAATTC
66 TCAAAAACCATTCTGACTCTATCTCACCTAAATTC
28503758 AAAT
1 AAAT
28503762 ATCTCAAAAT
Statistics
Matches: 102, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
99 91 0.89
100 11 0.11
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (100 bp):
AAATTATGACCCATAATTATTTCTGTAAAATTTATAATGATTTTTCAAAGTCAGAACTGGGGACT
TCAAAAACCATTCTGACTCTATCTCACCTAAATTC
Found at i:28504491 original size:23 final size:23
Alignment explanation
Indices: 28504465--28504512 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
28504455 ATAAGTGCCA
28504465 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
28504488 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
28504511 CA
1 CA
28504513 NNNNNNNNNN
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:28512131 original size:35 final size:35
Alignment explanation
Indices: 28512084--28512167 Score: 105
Period size: 35 Copynumber: 2.4 Consensus size: 35
28512074 ACTCTATGTT
* * *
28512084 TTGGTGTATTTCGAATGGATTAGCTCTTCTAAGCA
1 TTGGTGTGTTTCGAATGGATTAGCCCTTATAAGCA
* *
28512119 TTGGTGTGTTTCGGATGGATTAGCCCTTATGAGCA
1 TTGGTGTGTTTCGAATGGATTAGCCCTTATAAGCA
*
28512154 TCTAGTGTGTTTCG
1 T-TGGTGTGTTTCG
28512168 GTTAGATTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 31 0.74
36 11 0.26
ACGTcount: A:0.18, C:0.14, G:0.27, T:0.40
Consensus pattern (35 bp):
TTGGTGTGTTTCGAATGGATTAGCCCTTATAAGCA
Found at i:28516559 original size:28 final size:29
Alignment explanation
Indices: 28516505--28516562 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
28516495 GGGGTGTTAC
* *
28516505 AATAAATCATTTATTTATATAAACAAAAT
1 AATAAATCATGTACTTATATAAACAAAAT
*
28516534 AATAAA-CATGTACTTATATAATCAAAAT
1 AATAAATCATGTACTTATATAAACAAAAT
28516562 A
1 A
28516563 TATATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.55, C:0.09, G:0.02, T:0.34
Consensus pattern (29 bp):
AATAAATCATGTACTTATATAAACAAAAT
Found at i:28516773 original size:100 final size:96
Alignment explanation
Indices: 28516515--28516797 Score: 288
Period size: 100 Copynumber: 2.9 Consensus size: 96
28516505 AATAAATCAT
* * *
28516515 TTATTTATATAAACAAAATAATAAACATGTACTTATATAATCAAAATATATATTTTTTACATAAA
1 TTATTTATATAAA-AAAATAATAAAAATGTAATTATATAAT-AAAATATATA-TTTTT-C-TATA
* *
28516580 TCATTATG-C-TAAATGTATTTTAAATTAATAACTC
61 TCATTATGTCAAAAATATATTTTAAATTAATAACTC
* * * *
28516614 -T-TTTATTTATAAAAATAATAAAAATGTAATTATATAATAAAATATACATTTTATATATATCAT
1 TTATTTATATAAAAAAATAATAAAAATGTAATTATATAATAAAATATATATTTT-TCTATATCAT
*
28516677 TATGTCAAAAATATTTTTTAAATTAAT-ACTTCC
65 TATGTCAAAAATATATTTTAAATTAATAAC-T-C
* * *
28516710 ATTATTTATATAAATAAAATAATAAATATGTAATTACATAATGGAAATATATATTTTTCTATATC
1 -TTATTTATATAAA-AAAATAATAAAAATGTAATTATATAAT-AAAATATATATTTTTCTATATC
* *
28516775 ATTATGTTAAAAGAAATATTTTA
63 ATTATGTCAAAA-ATATATTTTA
28516798 TTCTTTAAAA
Statistics
Matches: 153, Mismatches: 20, Indels: 20
0.79 0.10 0.10
Matches are distributed among these distances:
93 11 0.07
94 7 0.05
95 28 0.18
96 26 0.17
97 8 0.05
98 2 0.01
99 8 0.05
100 43 0.28
101 20 0.13
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (96 bp):
TTATTTATATAAAAAAATAATAAAAATGTAATTATATAATAAAATATATATTTTTCTATATCATT
ATGTCAAAAATATATTTTAAATTAATAACTC
Found at i:28518812 original size:23 final size:24
Alignment explanation
Indices: 28518783--28518833 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
28518773 TGCGGCGGTA
28518783 AGAGAAAAAAGA-AAGAAGAAAGG
1 AGAGAAAAAAGAGAAGAAGAAAGG
*
28518806 AGAGAAAAAAGATGAAGATGAAAGG
1 AGAGAAAAAAGA-GAAGAAGAAAGG
28518831 AGA
1 AGA
28518834 AATAAATGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 12 0.48
25 13 0.52
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.04
Consensus pattern (24 bp):
AGAGAAAAAAGAGAAGAAGAAAGG
Found at i:28519334 original size:32 final size:32
Alignment explanation
Indices: 28519298--28519400 Score: 102
Period size: 30 Copynumber: 3.2 Consensus size: 32
28519288 GGCCAATTTT
28519298 ATAATTACATATTTATCAAAAACAAATTTAAC
1 ATAATTACATATTTATCAAAAACAAATTTAAC
* * ** * *
28519330 ATAA-T-GATATATATCAATTATATAATTTCATTAT
1 ATAATTACATATTTATCAAAAACA-AATTT-A--AC
28519364 ATAATTACATATTTATCAAAAACAAATTTAAC
1 ATAATTACATATTTATCAAAAACAAATTTAAC
28519396 ATAAT
1 ATAAT
28519401 GATATATATC
Statistics
Matches: 53, Mismatches: 12, Indels: 12
0.69 0.16 0.16
Matches are distributed among these distances:
30 12 0.23
31 6 0.11
32 11 0.21
34 6 0.11
35 6 0.11
36 12 0.23
ACGTcount: A:0.50, C:0.10, G:0.01, T:0.39
Consensus pattern (32 bp):
ATAATTACATATTTATCAAAAACAAATTTAAC
Found at i:28519345 original size:30 final size:30
Alignment explanation
Indices: 28519306--28519412 Score: 97
Period size: 30 Copynumber: 3.4 Consensus size: 30
28519296 TTATAATTAC
*
28519306 ATATTTATCAAAAACAAATTTAACATAATG
1 ATATATATCAAAAACAAATTTAACATAATG
** * * *
28519336 ATATATATCAATTATATAATTTCATTATATAATTAC
1 ATATATATCAAAAACA-AATTT-A--ACATAA-T-G
*
28519372 ATATTTATCAAAAACAAATTTAACATAATG
1 ATATATATCAAAAACAAATTTAACATAATG
28519402 ATATATATCAA
1 ATATATATCAA
28519413 TTATATAATT
Statistics
Matches: 58, Mismatches: 13, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
30 22 0.38
31 6 0.10
32 6 0.10
34 6 0.10
35 6 0.10
36 12 0.21
ACGTcount: A:0.50, C:0.09, G:0.02, T:0.38
Consensus pattern (30 bp):
ATATATATCAAAAACAAATTTAACATAATG
Found at i:28519378 original size:66 final size:66
Alignment explanation
Indices: 28519297--28519445 Score: 298
Period size: 66 Copynumber: 2.3 Consensus size: 66
28519287 AGGCCAATTT
28519297 TATAATTACATATTTATCAAAAACAAATTTAACATAATGATATATATCAATTATATAATTTCATT
1 TATAATTACATATTTATCAAAAACAAATTTAACATAATGATATATATCAATTATATAATTTCATT
28519362 A
66 A
28519363 TATAATTACATATTTATCAAAAACAAATTTAACATAATGATATATATCAATTATATAATTTCATT
1 TATAATTACATATTTATCAAAAACAAATTTAACATAATGATATATATCAATTATATAATTTCATT
28519428 A
66 A
28519429 TATAATTACATATTTAT
1 TATAATTACATATTTAT
28519446 TTATTTATTT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 83 1.00
ACGTcount: A:0.48, C:0.09, G:0.01, T:0.42
Consensus pattern (66 bp):
TATAATTACATATTTATCAAAAACAAATTTAACATAATGATATATATCAATTATATAATTTCATT
A
Found at i:28524994 original size:21 final size:20
Alignment explanation
Indices: 28524944--28524994 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
28524934 AATATCAATA
*
28524944 TGCAATTAAACTGTCAGTAGT
1 TGCAA-TAAACTGCCAGTAGT
*
28524965 TGTAGATAAACTGCCAGTAAGT
1 TGCA-ATAAACTGCCAGT-AGT
28524987 TGCAATAA
1 TGCAATAA
28524995 GTCGCCATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (20 bp):
TGCAATAAACTGCCAGTAGT
Found at i:28532175 original size:18 final size:18
Alignment explanation
Indices: 28532132--28532189 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
28532122 CAAGGTCACG
* * *
28532132 ATCAATAGCATCACTAGC
1 ATCAATATCGTCACTATC
28532150 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
28532168 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
28532183 ATCAATA
1 ATCAATA
28532190 AGAAAACATT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.30
16 1 0.03
18 25 0.68
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:28535327 original size:20 final size:21
Alignment explanation
Indices: 28535289--28535327 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
28535279 TTAATTATAA
* *
28535289 ATTAAAAGTCAAAACATATGT
1 ATTAAAAATCAAAAAATATGT
28535310 ATTAAAAAT-AAAAAATAT
1 ATTAAAAATCAAAAAATAT
28535328 ATAAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (21 bp):
ATTAAAAATCAAAAAATATGT
Found at i:28541568 original size:18 final size:19
Alignment explanation
Indices: 28541532--28541569 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
28541522 GTACCAAATT
*
28541532 GATTTTTGTTAATGTCTTG
1 GATTTTTGTTAATGCCTTG
*
28541551 GATTTTT-TTTATGCCTTG
1 GATTTTTGTTAATGCCTTG
28541569 G
1 G
28541570 TATCGAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.13, C:0.08, G:0.21, T:0.58
Consensus pattern (19 bp):
GATTTTTGTTAATGCCTTG
Found at i:28542303 original size:3 final size:3
Alignment explanation
Indices: 28542295--28542344 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
28542285 NNNNNNNNAC
*
28542295 AAT AAT AAT AAAT AAT -AT AAT AAT ACAT AAT GAT -AT AAT -AT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
28542339 AAT AAT
1 AAT AAT
28542345 TAAATAATTA
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
2 6 0.15
3 29 0.71
4 6 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:28542316 original size:15 final size:15
Alignment explanation
Indices: 28542296--28542342 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
28542286 NNNNNNNACA
28542296 ATAATAATAAATAAT
1 ATAATAATAAATAAT
*
28542311 ATAATAATACATAAT
1 ATAATAATAAATAAT
28542326 GAT-ATAATATAATAAT
1 -ATAATAATA-AATAAT
28542342 A
1 A
28542343 ATTAAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 21 0.75
16 7 0.25
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (15 bp):
ATAATAATAAATAAT
Found at i:28544143 original size:105 final size:105
Alignment explanation
Indices: 28544021--28544220 Score: 400
Period size: 105 Copynumber: 1.9 Consensus size: 105
28544011 ATCGCAGCCC
28544021 AATACGTTAGGGCACAATTTCTCAAAATTCTAAACATTGACTATTGCCTTTATTATTTTTTAGAA
1 AATACGTTAGGGCACAATTTCTCAAAATTCTAAACATTGACTATTGCCTTTATTATTTTTTAGAA
28544086 AAATCCTCATCTCGAGAAAACAACGTGTCAAGAAATCGCA
66 AAATCCTCATCTCGAGAAAACAACGTGTCAAGAAATCGCA
28544126 AATACGTTAGGGCACAATTTCTCAAAATTCTAAACATTGACTATTGCCTTTATTATTTTTTAGAA
1 AATACGTTAGGGCACAATTTCTCAAAATTCTAAACATTGACTATTGCCTTTATTATTTTTTAGAA
28544191 AAATCCTCATCTCGAGAAAACAACGTGTCA
66 AAATCCTCATCTCGAGAAAACAACGTGTCA
28544221 TATCCAATGC
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 95 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (105 bp):
AATACGTTAGGGCACAATTTCTCAAAATTCTAAACATTGACTATTGCCTTTATTATTTTTTAGAA
AAATCCTCATCTCGAGAAAACAACGTGTCAAGAAATCGCA
Found at i:28544735 original size:12 final size:12
Alignment explanation
Indices: 28544703--28544741 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
28544693 ATTTATAAAA
28544703 ATATGTATGTGT
1 ATATGTATGTGT
*
28544715 ATGTGTATGTGT
1 ATATGTATGTGT
* *
28544727 ATATATATGTAT
1 ATATGTATGTGT
28544739 ATA
1 ATA
28544742 AGAATTATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (12 bp):
ATATGTATGTGT
Found at i:28546726 original size:45 final size:45
Alignment explanation
Indices: 28546628--28546734 Score: 124
Period size: 45 Copynumber: 2.4 Consensus size: 45
28546618 CTTCAACCTA
* * * * * *
28546628 CTCCACTGCAACTACAGGGAGATAAGGTTTGCTATTTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATCTGCGATTTTCAATCCG
* * *
28546673 TTCCACTGCAACTTCAGGGAGATAAGATCTGCGGTTTTTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGATCTGCGATTTTCAATCCG
*
28546718 CTCTACTGCAACTTCAG
1 CTCCACTGCAACTTCAG
28546735 AAAGATAGTA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGGAGATAAGATCTGCGATTTTCAATCCG
Found at i:28546831 original size:129 final size:129
Alignment explanation
Indices: 28546677--28546982 Score: 470
Period size: 129 Copynumber: 2.4 Consensus size: 129
28546667 AGTCTGTTCC
* *
28546677 ACTGCAACTTCAGGGAGATAAGATCTGCGGTTTTTAATCCGCTCTACTGCAACTTCAGAAAGATA
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTTAATCCGCTCTACTGCAACTTCAGAAAGATA
*
28546742 GTATT-AGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTACTCT
66 GGATTGA-TTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTACTCT
* * * * * * *
28546806 ACTGTAACTTCAGAGAGATAGGATCTGTGTTTTTTAATCCACTCCACTGCAACTTTAGAGAGATA
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTTAATCCGCTCTACTGCAACTTCAGAAAGATA
*
28546871 GGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCTCT
66 GGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTACTCT
** *
28546935 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCGATCTGCTCTACT
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTTAATCCGCTCTACT
28546983 ACTGCTTAGG
Statistics
Matches: 157, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
129 156 0.99
130 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (129 bp):
ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTTAATCCGCTCTACTGCAACTTCAGAAAGATA
GGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTACTCT
Found at i:28546977 original size:45 final size:45
Alignment explanation
Indices: 28546677--28547004 Score: 138
Period size: 45 Copynumber: 7.6 Consensus size: 45
28546667 AGTCTGTTCC
* * ** *
28546677 ACTGCAACTTCAGGGAGATAAGATCTGCGGTTTTTAATCCGCTCT
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCGATCTGCTCT
* *
28546722 ACTGCAACTTCAGAAAGAT-AGTAT-TAGT--TTCTTCTG-TCTGCTCC
1 ACTGCAACTTCAGAGAGATAAG-ATCT-GTGGTT-TTC-GATCTGCTCT
* ** * * * *
28546766 ACTACTGCTT-AGGGAGATAAGA-C--TGG-ATGCGATCTACTCT
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCGATCTGCTCT
* * * ** ** *
28546806 ACTGTAACTTCAGAGAGATAGGATCTGTGTTTTTTAATCCACTCC
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCGATCTGCTCT
* * *
28546851 ACTGCAACTTTAGAGAGATAGGAT-TGAT--TTCTTCTG-TCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATCTG-TGGTT-TTC-GATCTGCTCT
* ** * * *
28546895 ACTACTGCTT-AGGGAGATAAGA-C--TGG-ATGCGATCTGCTCT
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCGATCTGCTCT
28546935 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCGATCTGCTCT
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCGATCTGCTCT
* ** *
28546980 ACTACTGCTT-AGGGAGATAAGATCT
1 ACTGCAACTTCAGAGAGATAAGATCT
28547005 ACAATCTTCG
Statistics
Matches: 204, Mismatches: 53, Indels: 53
0.66 0.17 0.17
Matches are distributed among these distances:
39 2 0.01
40 32 0.16
41 21 0.10
42 2 0.01
43 21 0.10
44 56 0.27
45 70 0.34
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (45 bp):
ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCGATCTGCTCT
Found at i:28547015 original size:44 final size:43
Alignment explanation
Indices: 28546887--28547175 Score: 160
Period size: 44 Copynumber: 6.7 Consensus size: 43
28546877 ATTTCTTCTG
* *
28546887 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGGA--TGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTCGATCTTCGA
* * ** * * * *
28546927 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCGA
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGATCT-CGATCTTCGA
* *
28546972 TCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCT-CGATCTTCGA
* * ** * ** *
28547016 CCTACTCCGTTGCTGCTTAGGGAGAT-AGGGCT-GGTGCTTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTCGAT-C-TTCGA
* * *
28547059 TCTACTCCACTACTGTTTAGGGAGATAAGATCTACAATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCT-CGATCTTCGA
* * * ** * * *
28547103 CCTACTCCGCTGTTACTTAGGGAGAT-AGAGCT-GGTGCTTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTCGAT-C-TTCGA
* *
28547146 TCTGCTTCACTACTACTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
28547176 CTTCTTTTTT
Statistics
Matches: 185, Mismatches: 51, Indels: 22
0.72 0.20 0.09
Matches are distributed among these distances:
40 14 0.08
41 13 0.07
42 4 0.02
43 61 0.33
44 72 0.39
45 20 0.11
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (43 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTCGATCTTCGA
Found at i:28547032 original size:129 final size:129
Alignment explanation
Indices: 28546677--28547042 Score: 355
Period size: 129 Copynumber: 2.8 Consensus size: 129
28546667 AGTCTGTTCC
* * * * * * * *
28546677 ACTGCAACTTCAGGGAGATAAGATCTGCGGTTTTTAATCCGCTCTACTGCAACTTCAGAAAGAT-
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCAATCCACTCCACTACAACTTTAGAGAGATA
** * *
28546741 AGTATT-AGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTACTC
66 AG-ATTGA-AATCTTCTGCCTACTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTACTC
28546805 T
129 T
* * * * *
28546806 ACTGTAACTTCAGAGAGATAGGATCTGTGTTTTTTAATCCACTCCACTGCAACTTTAGAGAGATA
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCAATCCACTCCACTACAACTTTAGAGAGATA
* ** * * *
28546871 GGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCTCT
66 AGATTGAAATCTTCTGCCTACTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTACTCT
* ** * ** *
28546935 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCGATCTGCTCTACTACTGC-TTAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCAATCCACTCCACTACAACTTTAGAGAGATA
** *
28546999 AGATCT-ACAATCTTC-GACCTACTCCGTTGCTGCTTAGGGAGATA
66 AGAT-TGA-AATCTTCTG-CCTACTCCACTACTGCTTAGGGAGATA
28547043 GGGCTGGTGC
Statistics
Matches: 201, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
128 15 0.07
129 184 0.92
130 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (129 bp):
ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTCAATCCACTCCACTACAACTTTAGAGAGATA
AGATTGAAATCTTCTGCCTACTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTACTCT
Found at i:28547080 original size:87 final size:87
Alignment explanation
Indices: 28546966--28547175 Score: 339
Period size: 87 Copynumber: 2.4 Consensus size: 87
28546956 GATCTGTGGT
* * *
28546966 TTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTACTCCGTTGCTG
1 TTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTACTCCGCTGCTA
*
28547031 CTTAGGGAGATAGGGCTGGTGC
66 CTTAGGGAGATAGAGCTGGTGC
* * *
28547053 TTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTACAATCTTCGACCTACTCCGCTGTTA
1 TTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTACTCCGCTGCTA
28547118 CTTAGGGAGATAGAGCTGGTGC
66 CTTAGGGAGATAGAGCTGGTGC
* *
28547140 TTTCGATCTGCTTCACTACTACTTAGGGAGATAAGA
1 TTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
28547176 CTTCTTTTTT
Statistics
Matches: 112, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 112 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (87 bp):
TTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTACTCCGCTGCTA
CTTAGGGAGATAGAGCTGGTGC
Found at i:28547164 original size:43 final size:43
Alignment explanation
Indices: 28547031--28547172 Score: 135
Period size: 43 Copynumber: 3.3 Consensus size: 43
28547021 TCCGTTGCTG
* *
28547031 CTTAGGGAGATAGGGCTGGTGCTTTCGATCTACTCCACTACTG
1 CTTAGGGAGATAGAGCTGGTGCTTTCGATCTACTCCACTACTA
* * * * * * **
28547074 TTTAGGGAGATA-AGAT-CTACAATCTTCGACCTACTCCGCTGTTA
1 CTTAGGGAGATAGAGCTGGTGC--T-TTCGATCTACTCCACTACTA
* *
28547118 CTTAGGGAGATAGAGCTGGTGCTTTCGATCTGCTTCACTACTA
1 CTTAGGGAGATAGAGCTGGTGCTTTCGATCTACTCCACTACTA
28547161 CTTAGGGAGATA
1 CTTAGGGAGATA
28547173 AGACTTCTTT
Statistics
Matches: 74, Mismatches: 20, Indels: 10
0.71 0.19 0.10
Matches are distributed among these distances:
41 2 0.03
42 2 0.03
43 38 0.51
44 27 0.36
45 3 0.04
46 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (43 bp):
CTTAGGGAGATAGAGCTGGTGCTTTCGATCTACTCCACTACTA
Found at i:28548704 original size:6 final size:6
Alignment explanation
Indices: 28548693--28548750 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
28548683 TTGGCCTCTC
28548693 CTTTTT CTTTTT C-TTTT CTTTTT CTTATTT -TCTTTT C-TTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTT-TTT CT-TTTT CTTTTT CTTTTT
28548740 CTATTTT -TTTT
1 CT-TTTT CTTTT
28548751 GAACATTCTT
Statistics
Matches: 46, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
5 13 0.28
6 25 0.54
7 8 0.17
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (6 bp):
CTTTTT
Found at i:28548709 original size:5 final size:5
Alignment explanation
Indices: 28548695--28548738 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
28548685 GGCCTCTCCT
* *
28548695 TTTTC TTTTTC TTTTC TTTT- TCTTA TTTTC TTTTC TTTTC TTTT
1 TTTTC -TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
28548739 TCTATTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
4 3 0.09
5 26 0.76
6 5 0.15
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:28548709 original size:11 final size:11
Alignment explanation
Indices: 28548695--28548750 Score: 69
Period size: 11 Copynumber: 4.9 Consensus size: 11
28548685 GGCCTCTCCT
28548695 TTTTCTTTTTC
1 TTTTCTTTTTC
28548706 TTTTCTTTTTC
1 TTTTCTTTTTC
*
28548717 TTATTTTCTTTTC
1 TT-TTCT-TTTTC
28548730 TTTTCTTTTTC
1 TTTTCTTTTTC
28548741 TATTT-TTTTT
1 T-TTTCTTTTT
28548751 GAACATTCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
11 24 0.60
12 9 0.22
13 7 0.17
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:28548725 original size:19 final size:17
Alignment explanation
Indices: 28548693--28548750 Score: 75
Period size: 17 Copynumber: 3.4 Consensus size: 17
28548683 TTGGCCTCTC
28548693 CTTTTTCTTTTTCTTTT
1 CTTTTTCTTTTTCTTTT
28548710 CTTTTTCTTATTTTCTTTT
1 CTTTTTC-T-TTTTCTTTT
28548729 C-TTTTCTTTTTCTATTT
1 CTTTTTCTTTTTCT-TTT
28548746 -TTTTT
1 CTTTTT
28548751 GAACATTCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
16 6 0.16
17 15 0.41
18 6 0.16
19 10 0.27
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (17 bp):
CTTTTTCTTTTTCTTTT
Found at i:28548733 original size:24 final size:23
Alignment explanation
Indices: 28548695--28548750 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 23
28548685 GGCCTCTCCT
28548695 TTTTCTTTTTCTTTTCTTTTTCTTA
1 TTTTC-TTTTCTTTTCTTTTTC-TA
28548720 TTTTCTTTTCTTTTCTTTTTCTA
1 TTTTCTTTTCTTTTCTTTTTCTA
28548743 TTTT-TTTT
1 TTTTCTTTT
28548751 GAACATTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 4 0.13
23 6 0.19
24 16 0.52
25 5 0.16
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (23 bp):
TTTTCTTTTCTTTTCTTTTTCTA
Found at i:28549402 original size:28 final size:28
Alignment explanation
Indices: 28549368--28549423 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
28549358 ACCATAAAGA
28549368 TAACCGTAAAAAACCTTAGGTGAGATCG
1 TAACCGTAAAAAACCTTAGGTGAGATCG
28549396 TAACCGTAAAAAACCTTAGGTGAGATCG
1 TAACCGTAAAAAACCTTAGGTGAGATCG
28549424 GCCCTATGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.21
Consensus pattern (28 bp):
TAACCGTAAAAAACCTTAGGTGAGATCG
Found at i:28552607 original size:42 final size:42
Alignment explanation
Indices: 28552560--28552644 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
28552550 CGATGCAGAC
*
28552560 TAGGTGCAACAAAAAGATCGTGGATTTGAACCAAATTATCCA
1 TAGGTGCAACAAAAAGATCGTGAATTTGAACCAAATTATCCA
28552602 TAGGTGCAACAAAAAGATCGTGAATTTGAACCAAATTATCCA
1 TAGGTGCAACAAAAAGATCGTGAATTTGAACCAAATTATCCA
28552644 T
1 T
28552645 TTTCGACAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (42 bp):
TAGGTGCAACAAAAAGATCGTGAATTTGAACCAAATTATCCA
Found at i:28553986 original size:6 final size:6
Alignment explanation
Indices: 28553975--28554001 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
28553965 TATAAAAATA
28553975 TGTATG TGTATG TGTATG TGTATG TGT
1 TGTATG TGTATG TGTATG TGTATG TGT
28554002 GTATATATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.33, T:0.52
Consensus pattern (6 bp):
TGTATG
Found at i:28554012 original size:16 final size:17
Alignment explanation
Indices: 28553972--28554013 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
28553962 ATTTATAAAA
*
28553972 ATATGTATGTGTATGTGT
1 ATATGTATGTG-ATGTAT
*
28553990 ATGTGTATGTG-TGTAT
1 ATATGTATGTGATGTAT
28554006 ATATGTAT
1 ATATGTAT
28554014 ATAAGAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 11 0.52
18 10 0.48
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (17 bp):
ATATGTATGTGATGTAT
Found at i:28559737 original size:21 final size:22
Alignment explanation
Indices: 28559706--28559747 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
28559696 TAAATATTCA
28559706 AAAATTTATAATAATAAAAAAT
1 AAAATTTATAATAATAAAAAAT
28559728 AAAA-TTATAATAATAAAAAA
1 AAAATTTATAATAATAAAAAA
28559748 CTCAACCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (22 bp):
AAAATTTATAATAATAAAAAAT
Found at i:28559810 original size:23 final size:23
Alignment explanation
Indices: 28559767--28559811 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
28559757 TTTTTATGAA
*
28559767 ATAAAAAATAAATTATGAAAACT
1 ATAAAAAATAAATTATAAAAACT
* *
28559790 ATAAAATATAAAATTAAAAAAA
1 ATAAAAAAT-AAATTATAAAAA
28559812 AGCAAGGTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 8 0.44
24 10 0.56
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (23 bp):
ATAAAAAATAAATTATAAAAACT
Found at i:28569829 original size:3 final size:3
Alignment explanation
Indices: 28569815--28569846 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
28569805 TGAGTAATGA
*
28569815 GGT GGT GAT GGT GGT GGT GGT GGT GGT GGT GG
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
28569847 AGAGGGCAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.03, C:0.00, G:0.66, T:0.31
Consensus pattern (3 bp):
GGT
Found at i:28569871 original size:36 final size:35
Alignment explanation
Indices: 28569831--28569927 Score: 133
Period size: 36 Copynumber: 2.7 Consensus size: 35
28569821 GATGGTGGTG
28569831 GTGGTGGTGGTGGTGGAGAGGGCAGCTTATTGTAT
1 GTGGTGGTGGTGGTGGAGAGGGCAGCTTATTGTAT
* *
28569866 AGTGGTGGTGATGGTGGAGAGGGCAGCTTTTTGTAT
1 -GTGGTGGTGGTGGTGGAGAGGGCAGCTTATTGTAT
*
28569902 GATGGTGGTTGTGGTGG-GCAGGGCAG
1 G-TGGTGGTGGTGGTGGAG-AGGGCAG
28569928 AGGATTGTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
35 2 0.04
36 53 0.96
ACGTcount: A:0.14, C:0.06, G:0.49, T:0.30
Consensus pattern (35 bp):
GTGGTGGTGGTGGTGGAGAGGGCAGCTTATTGTAT
Found at i:28571495 original size:37 final size:38
Alignment explanation
Indices: 28571442--28571517 Score: 145
Period size: 37 Copynumber: 2.0 Consensus size: 38
28571432 TTGTAAAAAA
28571442 AAAAAAAAAACAGTATCAATAATAATTCAATTATAAAT
1 AAAAAAAAAACAGTATCAATAATAATTCAATTATAAAT
28571480 AAAAAAAAAAC-GTATCAATAATAATTCAATTATAAAT
1 AAAAAAAAAACAGTATCAATAATAATTCAATTATAAAT
28571517 A
1 A
28571518 TAATTTTACA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 27 0.71
38 11 0.29
ACGTcount: A:0.63, C:0.08, G:0.03, T:0.26
Consensus pattern (38 bp):
AAAAAAAAAACAGTATCAATAATAATTCAATTATAAAT
Found at i:28571903 original size:22 final size:24
Alignment explanation
Indices: 28571878--28571921 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
28571868 ATCACAGTTT
*
28571878 ATTTTATAC-TTTA-TTTTTAGGA
1 ATTTAATACTTTTAGTTTTTAGGA
28571900 ATTTAATACTTTTAGTTTTTAG
1 ATTTAATACTTTTAGTTTTTAG
28571922 ATTTTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 4 0.21
24 7 0.37
ACGTcount: A:0.27, C:0.05, G:0.09, T:0.59
Consensus pattern (24 bp):
ATTTAATACTTTTAGTTTTTAGGA
Found at i:28571927 original size:23 final size:22
Alignment explanation
Indices: 28571878--28571928 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
28571868 ATCACAGTTT
28571878 ATTTT-ATACTTTATTTTTAGG
1 ATTTTAATACTTTATTTTTAGG
*
28571899 AATTTAATACTTTTAGTTTTTA-G
1 ATTTTAATAC-TTTA-TTTTTAGG
28571922 ATTTTAA
1 ATTTTAA
28571929 AATTTAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 4 0.16
22 4 0.16
23 11 0.44
24 6 0.24
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.59
Consensus pattern (22 bp):
ATTTTAATACTTTATTTTTAGG
Found at i:28571948 original size:20 final size:21
Alignment explanation
Indices: 28571910--28571951 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
28571900 ATTTAATACT
28571910 TTTAGTTTTTAGATTTTAAAA
1 TTTAGTTTTTAGATTTTAAAA
28571931 TTTAG-TTTTA-ATTGTTAAAA
1 TTTAGTTTTTAGATT-TTAAAA
28571951 T
1 T
28571952 CGTTATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 3 0.15
20 12 0.60
21 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (21 bp):
TTTAGTTTTTAGATTTTAAAA
Found at i:28572156 original size:29 final size:31
Alignment explanation
Indices: 28572113--28572178 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
28572103 ATATCTGTAA
28572113 AAAAAACTAAATTTCTAAA-AAT-AAAAATAC
1 AAAAAACTAAATTTC-AAATAATGAAAAATAC
*
28572143 AAAAAA-TAAATTTCAAATTTATGAAAAATAC
1 AAAAAACTAAATTTCAAA-TAATGAAAAATAC
28572174 AAAAA
1 AAAAA
28572179 TTTACAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 3 0.09
29 8 0.25
30 8 0.25
31 13 0.41
ACGTcount: A:0.67, C:0.08, G:0.02, T:0.24
Consensus pattern (31 bp):
AAAAAACTAAATTTCAAATAATGAAAAATAC
Found at i:28580781 original size:31 final size:30
Alignment explanation
Indices: 28580704--28580781 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 30
28580694 TAGTAAAAAT
* *
28580704 AAAATTATATTTTAATCCCTTAAAATGATA
1 AAAATTAAAATTTAATCCCTTAAAATGATA
*
28580734 AAAATTATCAAA-TTAATCTCTTAAAAATGATA
1 AAAATTA--AAATTTAATCCCTT-AAAATGATA
28580766 AAAATTAAAATTTAAT
1 AAAATTAAAATTTAAT
28580782 TTCTACCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
30 10 0.24
31 14 0.34
32 17 0.41
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.37
Consensus pattern (30 bp):
AAAATTAAAATTTAATCCCTTAAAATGATA
Found at i:28581280 original size:111 final size:111
Alignment explanation
Indices: 28581086--28581357 Score: 544
Period size: 111 Copynumber: 2.5 Consensus size: 111
28581076 TGATTTTCAA
28581086 CCATTTTTAATACATTTTATTATCTCACAATTTCATATTTTATAATTTTTATTCCCTAATTATAT
1 CCATTTTTAATACATTTTATTATCTCACAATTTCATATTTTATAATTTTTATTCCCTAATTATAT
28581151 TTTTAAAAATAATTTATTCATACAAATTTTAATATAATAATTCTAT
66 TTTTAAAAATAATTTATTCATACAAATTTTAATATAATAATTCTAT
28581197 CCATTTTTAATACATTTTATTATCTCACAATTTCATATTTTATAATTTTTATTCCCTAATTATAT
1 CCATTTTTAATACATTTTATTATCTCACAATTTCATATTTTATAATTTTTATTCCCTAATTATAT
28581262 TTTTAAAAATAATTTATTCATACAAATTTTAATATAATAATTCTAT
66 TTTTAAAAATAATTTATTCATACAAATTTTAATATAATAATTCTAT
28581308 CCATTTTTAATACATTTTATTATCTCACAATTTCATATTTTATAATTTTT
1 CCATTTTTAATACATTTTATTATCTCACAATTTCATATTTTATAATTTTT
28581358 TATATCCTAA
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 161 1.00
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (111 bp):
CCATTTTTAATACATTTTATTATCTCACAATTTCATATTTTATAATTTTTATTCCCTAATTATAT
TTTTAAAAATAATTTATTCATACAAATTTTAATATAATAATTCTAT
Found at i:28593109 original size:12 final size:12
Alignment explanation
Indices: 28593092--28593119 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
28593082 CAAATCCGAG
28593092 TTTAATTTCTAA
1 TTTAATTTCTAA
28593104 TTTAATTTCTAA
1 TTTAATTTCTAA
28593116 TTTA
1 TTTA
28593120 TTTAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (12 bp):
TTTAATTTCTAA
Found at i:28593124 original size:16 final size:16
Alignment explanation
Indices: 28593103--28593161 Score: 52
Period size: 16 Copynumber: 3.8 Consensus size: 16
28593093 TTAATTTCTA
28593103 ATTTAATTTCTAATTT
1 ATTTAATTTCTAATTT
* *
28593119 ATTTAATTTTTTATTT
1 ATTTAATTTCTAATTT
*
28593135 ATGCT-ATTTC-AA-TT
1 AT-TTAATTTCTAATTT
*
28593149 ATTTAGTTTCTAA
1 ATTTAATTTCTAA
28593162 ACATTTCAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 7
0.70 0.15 0.15
Matches are distributed among these distances:
13 1 0.03
14 8 0.24
15 3 0.09
16 20 0.61
17 1 0.03
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (16 bp):
ATTTAATTTCTAATTT
Found at i:28594904 original size:84 final size:85
Alignment explanation
Indices: 28594798--28594967 Score: 333
Period size: 84 Copynumber: 2.0 Consensus size: 85
28594788 AATAAACTTT
28594798 CAAATATAATATATAATAGATATTATTAACAAGATATTTAATTTATAAGTAAAACTTTAATTTTA
1 CAAATATAATATATAATAGATATTATTAACAAGATATTTAATTTATAAGTAAAACTTTAATTTTA
28594863 AAAAATTTCAAAATATGCAA
66 AAAAATTTCAAAATATGCAA
28594883 CAAATATAATA-ATAATAGATATTATTAACAAGATATTTAATTTATAAGTAAAACTTTAATTTTA
1 CAAATATAATATATAATAGATATTATTAACAAGATATTTAATTTATAAGTAAAACTTTAATTTTA
28594947 AAAAATTTCAAAATATGCAA
66 AAAAATTTCAAAATATGCAA
28594967 C
1 C
28594968 CAATGAAAAG
Statistics
Matches: 85, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
84 74 0.87
85 11 0.13
ACGTcount: A:0.52, C:0.06, G:0.05, T:0.37
Consensus pattern (85 bp):
CAAATATAATATATAATAGATATTATTAACAAGATATTTAATTTATAAGTAAAACTTTAATTTTA
AAAAATTTCAAAATATGCAA
Found at i:28606462 original size:6 final size:6
Alignment explanation
Indices: 28606451--28606501 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
28606441 GTCTCCCTGC
* * *
28606451 AAAATA AAAATA AAAATA AAAATA AATAATA AGAA-A AAATTA AAATTA
1 AAAATA AAAATA AAAATA AAAATA AA-AATA AAAATA AAAATA AAAATA
28606499 AAA
1 AAA
28606502 TGTGTATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
5 3 0.08
6 32 0.80
7 5 0.12
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:28611465 original size:16 final size:17
Alignment explanation
Indices: 28611434--28611466 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
28611424 ATAGGGAGTT
*
28611434 AAATTTAGTTTAAAATG
1 AAATTTAGTATAAAATG
28611451 AAATTT-GTATAAAATG
1 AAATTTAGTATAAAATG
28611467 TAGAATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
AAATTTAGTATAAAATG
Found at i:28614538 original size:350 final size:351
Alignment explanation
Indices: 28613886--28614588 Score: 1399
Period size: 350 Copynumber: 2.0 Consensus size: 351
28613876 AAATAAATTA
28613886 AAAAATATATATACTTAAATAACACTAAAATATGTACAACTTAGCAAGCAAATGCCTTTAAAATA
1 AAAAATATATATACTTAAATAACACTAAAATATGTACAACTTAGCAAGCAAATGCCTTTAAAATA
28613951 GTAGCAAAATTAATAATAAAATAATAGTTATACAACATCCAAACAATAATAACAAAATAATAACA
66 GTAGCAAAATTAATAATAAAATAATAGTTATACAACATCCAAACAATAATAACAAAATAATAACA
28614016 TATAATAGTGAAATGGCAGCAAAACAACAACAGATTTTTTTTTTTACAAATTCGGGTTAAACCAG
131 TATAATAGTGAAATGGCAGCAAAACAACAACAGATTTTTTTTTTTACAAATTCGGGTTAAACCAG
28614081 GCCCAGGTCAAAAAAGCTTATTCGAGTTATGATCTGTTTAGGAAAAAAAAACTTGTCTAAATCTA
196 GCCCAGGTCAAAAAAGCTTATTCGAGTTATGATCTGTTTAGGAAAAAAAAACTTGTCTAAATCTA
28614146 TTTTTAAAGGCTATATTTTTACTTAAATCTTTTCACTTTTTGAACTAAATAACCTGATCTATGAA
261 TTTTTAAAGGCTATATTTTTACTTAAATCTTTTCACTTTTTGAACTAAATAACCTGATCTATGAA
28614211 TAGGTGTATTGCAAACACAAAACTTT
326 TAGGTGTATTGCAAACACAAAACTTT
28614237 AAAAATATAT-TACTTAAATAACACTAAAATATGTACAACTTAGCAAGCAAATGCCTTTAAAATA
1 AAAAATATATATACTTAAATAACACTAAAATATGTACAACTTAGCAAGCAAATGCCTTTAAAATA
28614301 GTAGCAAAATTAATAATAAAATAATAGTTATACAACATCCAAACAATAATAACAAAATAATAACA
66 GTAGCAAAATTAATAATAAAATAATAGTTATACAACATCCAAACAATAATAACAAAATAATAACA
28614366 TATAATAGTGAAATGGCAGCAAAACAACAACAGATTTTTTTTTTTACAAATTCGGGTTAAACCAG
131 TATAATAGTGAAATGGCAGCAAAACAACAACAGATTTTTTTTTTTACAAATTCGGGTTAAACCAG
28614431 GCCCAGGTCAAAAAAGCTTATTCGAGTTATGATCTGTTTAGGAAAAAAAAACTTGTCTAAATCTA
196 GCCCAGGTCAAAAAAGCTTATTCGAGTTATGATCTGTTTAGGAAAAAAAAACTTGTCTAAATCTA
28614496 TTTTTAAAGGCTATATTTTTACTTAAATCTTTTCACTTTTTGAACTAAATAACCTGATCTATGAA
261 TTTTTAAAGGCTATATTTTTACTTAAATCTTTTCACTTTTTGAACTAAATAACCTGATCTATGAA
28614561 TAGGTGTATTGCAAACACAAAACTTT
326 TAGGTGTATTGCAAACACAAAACTTT
28614587 AA
1 AA
28614589 CGTTTAAATC
Statistics
Matches: 352, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
350 342 0.97
351 10 0.03
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (351 bp):
AAAAATATATATACTTAAATAACACTAAAATATGTACAACTTAGCAAGCAAATGCCTTTAAAATA
GTAGCAAAATTAATAATAAAATAATAGTTATACAACATCCAAACAATAATAACAAAATAATAACA
TATAATAGTGAAATGGCAGCAAAACAACAACAGATTTTTTTTTTTACAAATTCGGGTTAAACCAG
GCCCAGGTCAAAAAAGCTTATTCGAGTTATGATCTGTTTAGGAAAAAAAAACTTGTCTAAATCTA
TTTTTAAAGGCTATATTTTTACTTAAATCTTTTCACTTTTTGAACTAAATAACCTGATCTATGAA
TAGGTGTATTGCAAACACAAAACTTT
Found at i:28621859 original size:20 final size:19
Alignment explanation
Indices: 28621802--28621859 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 19
28621792 AATTTACAAA
*
28621802 ATTTTAAAAAAATTAAAAAT
1 ATTTTAAAAAAA-TATAAAT
* * *
28621822 ATATAAAAAAACACATAAAT
1 ATTTTAAAAAA-ATATAAAT
28621842 ATTTTAAAAAATATATAA
1 ATTTTAAAAAA-ATATAA
28621860 TAATAAATTT
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (19 bp):
ATTTTAAAAAAATATAAAT
Found at i:28625519 original size:18 final size:18
Alignment explanation
Indices: 28625493--28625527 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
28625483 AGGTGCGTTT
*
28625493 CCTAGCCCTTATATGTAC
1 CCTAACCCTTATATGTAC
28625511 CCTAACCCTTATATGTA
1 CCTAACCCTTATATGTA
28625528 TCCTTTTCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (18 bp):
CCTAACCCTTATATGTAC
Found at i:28625811 original size:21 final size:21
Alignment explanation
Indices: 28625785--28625834 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
28625775 TAGATGTCTA
* *
28625785 ACCGGAAGAACCAGAATCC-CC
1 ACCGGAAGAACAACAA-CCGCC
*
28625806 ACCGGAGGAACAACAACCGCC
1 ACCGGAAGAACAACAACCGCC
28625827 ACCGGAAG
1 ACCGGAAG
28625835 CTAAAGAAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.38, C:0.36, G:0.24, T:0.02
Consensus pattern (21 bp):
ACCGGAAGAACAACAACCGCC
Found at i:28626045 original size:78 final size:79
Alignment explanation
Indices: 28625916--28626065 Score: 275
Period size: 78 Copynumber: 1.9 Consensus size: 79
28625906 ATTGATTGCC
* *
28625916 GTATTTAAATTTATTTGTACAAATATTTTGAATATTTTGATATTATTTTATGT-AAAAAAATAGA
1 GTATTTAAATTTATTTGTACAAATATTTTGAATATTTTGAAATTATTTTATGTAAAAAAAAAAGA
28625980 AATTTTTTGATTTT
66 AATTTTTTGATTTT
28625994 GTATTTAAATTTATTTGTACAAATATTTTGAATATTTTGAAATTATTTTATGTAAAAAAAAAAGA
1 GTATTTAAATTTATTTGTACAAATATTTTGAATATTTTGAAATTATTTTATGTAAAAAAAAAAGA
28626059 AATTTTT
66 AATTTTT
28626066 GAGTTATTTT
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
78 52 0.75
79 17 0.25
ACGTcount: A:0.40, C:0.01, G:0.09, T:0.50
Consensus pattern (79 bp):
GTATTTAAATTTATTTGTACAAATATTTTGAATATTTTGAAATTATTTTATGTAAAAAAAAAAGA
AATTTTTTGATTTT
Found at i:28626170 original size:23 final size:23
Alignment explanation
Indices: 28626118--28626432 Score: 171
Period size: 29 Copynumber: 12.5 Consensus size: 23
28626108 TTTGATATAA
* *
28626118 TAAAAATCCTAACCTAATTTAAC
1 TAAAAACCCTAACCTAATTTAAT
*** *
28626141 CCTAAACCCTGACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
28626164 TAAAAACCCTAAACC----TTAACT
1 TAAAAACCCT-AACCTAATTTAA-T
*
28626185 TAAAAACCCTAAACCTTAA-CT--T
1 TAAAAACCCT-AACC-TAATTTAAT
28626207 TAAAAACCCTAACCTAATTTAA-
1 TAAAAACCCTAACCTAATTTAAT
28626229 TACAAAACCCTAACCTAATTTAAT
1 TA-AAAACCCTAACCTAATTTAAT
28626253 TAAAAACCCTAACCCTAACCTAATTTAA-
1 T--AAA----AACCCTAACCTAATTTAAT
28626281 TACAAAACCCTAACCTAATTTAAT
1 TA-AAAACCCTAACCTAATTTAAT
28626305 TAAAAACCCTAACCCTAACCTAATTTAAT
1 T--AAA----AACCCTAACCTAATTTAAT
28626334 TAAAAATCCTACCCCTAACCTAATTTAATT
1 T-AAAA----A-CCCTAACCTAATTTAA-T
28626364 ATAAACCCTAACCCTAACCTAATTTAAT
1 -TAAA----AACCCTAACCTAATTTAAT
28626392 TAAAAAACCTAACCCTAACCTAATTTAAT
1 T---AAA---AACCCTAACCTAATTTAAT
*
28626421 TAAAAGCCCTAA
1 TAAAAACCCTAA
28626433 ACCTTAACTT
Statistics
Matches: 240, Mismatches: 13, Indels: 78
0.73 0.04 0.24
Matches are distributed among these distances:
20 7 0.03
21 21 0.09
22 13 0.05
23 69 0.29
24 6 0.03
25 5 0.02
26 6 0.03
27 3 0.01
28 7 0.03
29 93 0.39
30 8 0.03
31 1 0.00
34 1 0.00
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (23 bp):
TAAAAACCCTAACCTAATTTAAT
Found at i:28626209 original size:22 final size:21
Alignment explanation
Indices: 28626159--28626218 Score: 104
Period size: 21 Copynumber: 2.9 Consensus size: 21
28626149 CTGACCTAAT
28626159 TTAA-TTAAAAACCCTAAACC
1 TTAACTTAAAAACCCTAAACC
28626179 TTAACTTAAAAACCCTAAACC
1 TTAACTTAAAAACCCTAAACC
28626200 TTAACTTTAAAAACCCTAA
1 TTAAC-TTAAAAACCCTAA
28626219 CCTAATTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.11
21 21 0.55
22 13 0.34
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (21 bp):
TTAACTTAAAAACCCTAAACC
Done.