Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35726063
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1821929 characters in sequence are not A, C, G, or T
File 99 of 109
Found at i:31610418 original size:8 final size:8
Alignment explanation
Indices: 31610405--31610437 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
31610395 CAGATTGACT
31610405 TATGGTGC
1 TATGGTGC
31610413 TATGGTGC
1 TATGGTGC
31610421 TATGGTGC
1 TATGGTGC
*
31610429 TATGCTGC
1 TATGGTGC
31610437 T
1 T
31610438 TTGTGTCTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.12, C:0.15, G:0.33, T:0.39
Consensus pattern (8 bp):
TATGGTGC
Found at i:31621902 original size:27 final size:26
Alignment explanation
Indices: 31621851--31621934 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
31621841 TAAGAAAAAA
* *
31621851 AAAATA-AAAAAACTTATAAACATTAT
1 AAAATACAAAAAA-ATATAAAAATTAT
31621877 AAAATACAAAAAAATCA-AATAAATTAT
1 AAAATACAAAAAAAT-ATAA-AAATTAT
* * *
31621904 AAATTATAAAAAAATATAAAAATAAT
1 AAAATACAAAAAAATATAAAAATTAT
31621930 AAAAT
1 AAAAT
31621935 TTATTTAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
26 20 0.42
27 28 0.58
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (26 bp):
AAAATACAAAAAAATATAAAAATTAT
Found at i:31621904 original size:36 final size:34
Alignment explanation
Indices: 31621848--31621914 Score: 91
Period size: 36 Copynumber: 1.9 Consensus size: 34
31621838 GAATAAGAAA
31621848 AAAAAAATAAAAAAACTTATAAACATTATAAAATAC
1 AAAAAAATAAAAAAACTTAT-AA-ATTATAAAATAC
*
31621884 AAAAAAATCAAATAAA-TTATAAATTATAAAA
1 AAAAAAAT-AAAAAAACTTATAAATTATAAAA
31621915 AAATATAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 9 0.31
35 2 0.07
36 12 0.41
37 6 0.21
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (34 bp):
AAAAAAATAAAAAAACTTATAAATTATAAAATAC
Found at i:31621931 original size:19 final size:19
Alignment explanation
Indices: 31621877--31621933 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
31621867 TAAACATTAT
*
31621877 AAAATACAAAAA-AATCAAA
1 AAAATATAAAAATAAT-AAA
* * *
31621896 TAAAT-TATAAATTATAAA
1 AAAATATAAAAATAATAAA
31621914 AAAATATAAAAATAATAAA
1 AAAATATAAAAATAATAAA
31621933 A
1 A
31621934 TTTATTTAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
18 11 0.38
19 18 0.62
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.23
Consensus pattern (19 bp):
AAAATATAAAAATAATAAA
Found at i:31621944 original size:19 final size:19
Alignment explanation
Indices: 31621922--31621993 Score: 56
Period size: 19 Copynumber: 3.6 Consensus size: 19
31621912 AAAAAATATA
31621922 AAAATAATAAAATTTATT-T
1 AAAATAATAAAATTT-TTAT
* *
31621941 AAAATATTTAAATTTTTAT
1 AAAATAATAAAATTTTTAT
* * *
31621960 AAAAAAATATTAGAATTCTTAC
1 AAAATAATA--A-AATTTTTAT
31621982 AAAATAATAAAA
1 AAAATAATAAAA
31621994 ACTTGTAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
18 2 0.05
19 22 0.54
20 1 0.02
21 1 0.02
22 15 0.37
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (19 bp):
AAAATAATAAAATTTTTAT
Found at i:31621976 original size:22 final size:22
Alignment explanation
Indices: 31621941--31621990 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
31621931 AAATTTATTT
* *
31621941 AAAATATTTAAATTTTTATAAA
1 AAAATATTTAAATTCTTACAAA
31621963 AAAATA-TTAGAATTCTTACAAA
1 AAAATATTTA-AATTCTTACAAA
*
31621985 ATAATA
1 AAAATA
31621991 AAAACTTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (22 bp):
AAAATATTTAAATTCTTACAAA
Found at i:31625906 original size:523 final size:524
Alignment explanation
Indices: 31624964--31626419 Score: 1757
Period size: 523 Copynumber: 2.8 Consensus size: 524
31624954 TAGGTGCTTG
* * * * * * *
31624964 AATTTGACTTGTTCTTGAACAGTGTCCATGGCA-CCTTTTAAGGGGTTTTAATTATCGGTTAGCA
1 AATTTGACTTATTGTTGAACAGTCTCAAAGG-AGCCTTTTAAGGGGTTTTAGTTATCAGTTAGCA
* * * * *
31625028 TTTTGTTTCAA-TGGAGGGGAGTTCAATCTTCTTGGTGAGTTTAGTGAATTATTAATTGTGTTTC
65 TTGTGTGTCAATTGGAGGGGAGTTCAATCCTCTTGGTGAGTTTTGTG-A--ACTAA-TGTGTTTC
* * ** * * * *
31625092 CTCTGTTTCTCTGCTAGTTGTGTGTGAAATAC--TGTGTTGACTCTGCATGTGTAA---GTAGTC
126 CTTTGTTTCTTTGCTAACTATATGTGAAATACTTTGTGTTGACTCTGCATATGTAAGTTGTAGCC
* * * *
31625152 CATGTAGGATAATTTGGCATTTTGGTGTGATTGACTAGTTTGAGCAATGGAAGAATT-AGCTTAG
191 CATGTAGG---A--TGACA--TTGGTGAGATTGACTAGTTTGAGCAAAGGAAGAATTGACCTTAG
* * ** *
31625216 TAGACTATGTGCTCCAATTTGACTTCTTGTTGAGAAGTGTCAATGGAGATTTTTAAGGGGTTTTA
249 -AGACTAGGTGCTCAAATTTGACTTCTTGTTGAGCGGTGTCAATGGAGCTTTTTAAGGGGTTTT-
* * * *
31625281 ATTAT-GCGTT-AGTGTTGTATCAATGGAGGGGAGTTCAATCATCTTGGTGAGTTCAGTGAACTG
312 ATTATGGCTTTGCGTG-TGTGTCAATGGAGGGGAGTTCAATCATCTTGGTGAGTTTAGTGAACTG
* *
31625344 TTAATTGTGTTTCCCCTGTTTCTTCACTAACTAAATGGGAAATTCTTTCTGTTGACCATGCATAC
376 TTAATTGTGTTTCCTCTGTTTCTTCACTAACTAAATGGGAAATACTTTCTGTTGACCATGCATAC
* * * * *
31625409 GGAAGTAG-TAGCTTATCTGGGATA-TGTTGATGAGATTGACTAGTTTGAGCAAAGGAAGACTTA
441 GGAAGTAGCT-GCTTATATAGGATACT-TTGATGAGATTGACGAGTTTGAGAAAAGGAAGAATTA
* *
31625472 ACTTAATAGACTAGG-TGCTCA
504 ACTCAATAGACT-GGACGCTCA
* * * * ** *
31625493 GATTTGACTTCTTGTTGAGCAGTCTCAATGGAGGTTTTTAA-GGGTTTTAGTTATCTGTTAGCAT
1 AATTTGACTTATTGTTGAACAGTCTCAAAGGAGCCTTTTAAGGGGTTTTAGTTATCAGTTAGCAT
*
31625557 TGTGTGTCAATTGGAGGGGAGTTCAATCCTCTTGGTGAGTTTTGTGAACT-A-GT-TTTCTTTTG
66 TGTGTGTCAATTGGAGGGGAGTTCAATCCTCTTGGTGAGTTTTGTGAACTAATGTGTTTCCTTTG
31625619 TTTCTTTGCTAACTATATGTGAAATACTTTGTGTTGACTCTGCATATGTAAGTTGTAGCCCATGT
131 TTTCTTTGCTAACTATATGTGAAATACTTTGTGTTGACTCTGCATATGTAAGTTGTAGCCCATGT
* ** *
31625684 AGGATGACATTGGTGAGCTTGACTAGTTTGAGTGAGGGAAGAATTTGACCTTAGAGACTAGGTGC
196 AGGATGACATTGGTGAGATTGACTAGTTTGAGCAAAGGAAGAA-TTGACCTTAGAGACTAGGTGC
* *
31625749 TCAAATTTGACTTCATGTTGAGCGGTGTCAATGGGGCTTTTTAAGGGGTTTTATTATGGCTTTGC
260 TCAAATTTGACTTCTTGTTGAGCGGTGTCAATGGAGCTTTTTAAGGGGTTTTATTATGGCTTTGC
* *
31625814 GTTGTGTGTCAAT-GATCAGGGAGTTCAATCATCTCGGTGAGTTTAGTGAACTGTTAATTGTGTT
325 G-TGTGTGTCAATGGA--GGGGAGTTCAATCATCTTGGTGAGTTTAGTGAACTGTTAATTGTGTT
* * ** * *
31625878 TCCTCTGTTTCTTCCCTAACTGAATGGGAAATACTTTCTGTTGACTTTGCATATGGCAGTAGCTG
387 TCCTCTGTTTCTTCACTAACTAAATGGGAAATACTTTCTGTTGACCATGCATACGGAAGTAGCTG
31625943 CTTATATAGGATACTTTGATGAGATTGACGAGTTTGAGAAAAGGAAGAATTAACTCAATAGACTG
452 CTTATATAGGATACTTTGATGAGATTGACGAGTTTGAGAAAAGGAAGAATTAACTCAATAGACTG
31626008 GACGCTCA
517 GACGCTCA
* *
31626016 AATTTGACTTATTGTTGAACAGTGTCAAAGGAGCCTTTTAAGGGGGTTTTTGTTATCAGTTAGCA
1 AATTTGACTTATTGTTGAACAGTCTCAAAGGAGCCTTTTAA-GGGGTTTTAGTTATCAGTTAGCA
*
31626081 TTGTGTGTCAATTGGA-GGGAGTTCAATCCTCTTGGTGAGTTCTGTGAACTAGTAATCGTGTTTC
65 TTGTGTGTCAATTGGAGGGGAGTTCAATCCTCTTGGTGAGTTTTGTGAAC---TAAT-GTGTTTC
*
31626145 CTTTGTTTCTTTGCTAACTATATGTGAAATACTTTGTGTTGACTCTGCATATTTAAGTTGTAGCC
126 CTTTGTTTCTTTGCTAACTATATGTGAAATACTTTGTGTTGACTCTGCATATGTAAGTTGTAGCC
* *
31626210 CATGTAGGATAACATTGGTGAGATTGACTAGTTTGAGCAAAGGAAGAATTGACTTTAGAGACTAG
191 CATGTAGGATGACATTGGTGAGATTGACTAGTTTGAGCAAAGGAAGAATTGACCTTAGAGACTAG
** * * *
31626275 GTGCTTGAATTTGACTTCTTGTTCAACGGTGTCAATGGAGCCTTTTAAGGGGTTTTAGTTATTGG
256 GTGCTCAAATTTGACTTCTTGTTGAGCGGTGTCAATGGAGCTTTTTAAGGGGTTTTA-TTA-TGG
* ** * * * *
31626340 -TTAGCGCCATGTGTCAATGGAGGGGAGTT-AAGCCTCTTGGTGAGTTTAGTAAACTATTAATTG
319 CTTTGCG-TGTGTGTCAATGGAGGGGAGTTCAATCATCTTGGTGAGTTTAGTGAACTGTTAATTG
31626403 TGTTTCCTCTGTTTCTT
383 TGTTTCCTCTGTTTCTT
31626420 TGCTTGTGAA
Statistics
Matches: 804, Mismatches: 94, Indels: 58
0.84 0.10 0.06
Matches are distributed among these distances:
520 34 0.04
521 64 0.08
522 50 0.06
523 198 0.25
524 56 0.07
525 37 0.05
526 2 0.00
527 14 0.02
528 32 0.04
529 110 0.14
530 75 0.09
531 127 0.16
532 5 0.01
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.38
Consensus pattern (524 bp):
AATTTGACTTATTGTTGAACAGTCTCAAAGGAGCCTTTTAAGGGGTTTTAGTTATCAGTTAGCAT
TGTGTGTCAATTGGAGGGGAGTTCAATCCTCTTGGTGAGTTTTGTGAACTAATGTGTTTCCTTTG
TTTCTTTGCTAACTATATGTGAAATACTTTGTGTTGACTCTGCATATGTAAGTTGTAGCCCATGT
AGGATGACATTGGTGAGATTGACTAGTTTGAGCAAAGGAAGAATTGACCTTAGAGACTAGGTGCT
CAAATTTGACTTCTTGTTGAGCGGTGTCAATGGAGCTTTTTAAGGGGTTTTATTATGGCTTTGCG
TGTGTGTCAATGGAGGGGAGTTCAATCATCTTGGTGAGTTTAGTGAACTGTTAATTGTGTTTCCT
CTGTTTCTTCACTAACTAAATGGGAAATACTTTCTGTTGACCATGCATACGGAAGTAGCTGCTTA
TATAGGATACTTTGATGAGATTGACGAGTTTGAGAAAAGGAAGAATTAACTCAATAGACTGGACG
CTCA
Found at i:31626087 original size:266 final size:265
Alignment explanation
Indices: 31624695--31626597 Score: 1458
Period size: 265 Copynumber: 7.2 Consensus size: 265
31624685 GTGCTTGAAA
* * ** * * * * * * * *
31624695 TTGACTTCTTCTTGAATGGTGTCAATGGCGCC-TATAAGAGGTTTTAATTATCAGCTAGCACTAT
1 TTGACTTATTGTTGAACAGTGTCAATGGAGCCTTTTAAGGGGTTTTAGTTATCGGTTAGCATTGT
* * * * * * *
31624759 GTGTCAATGGAGGGGAGTTCAGTCCTCTTGGCGGGTTTAGTGAATTATTAATCGTGTTTCCTCTG
66 GTGTCAATGGAAGGGAGTTCAATCCTCTTGGTGAGTTTAGTGAACTGTTAATTGTGTTTCCTCTG
* * * *** * ** * * * * *
31624824 ATTCTTCACTAGCTGCGTGTGAAATACTTGGTGTTGGCTCTGTATATGTAAGTAGTAACCCATAT
131 TTTCTTCGCTAACTATATGGGAAATACTTTCTGTTGACTCTGCATATGGAAGTAGTAGCCCATGT
* * * * *
31624889 AGGATTAGCCCATTGATGTGATTGAAC-AGTTTGAGCAAAGGAAAAACTTAGTAGACT-AGGACC
196 AGGA-TA--ACATTGATGAGATTG-ACTAGTTTGAGCAAAGGAAGAA--T--TA-ACTCAAGA-G
**
31624952 ACTAGGTGCTTGAAT
251 ACTAGGTGCTCAAAT
* * * * *
31624967 TTGACTTGTTCTTGAACAGTGTCCATGGCA-CCTTTTAAGGGGTTTTAATTATCGGTTAGCATTT
1 TTGACTTATTGTTGAACAGTGTCAATGG-AGCCTTTTAAGGGGTTTTAGTTATCGGTTAGCATTG
* * * * *
31625031 TGTTTCAATGGAGGGGAGTTCAATCTTCTTGGTGAGTTTAGTGAATTATTAATTGTGTTTCCTCT
65 TGTGTCAATGGAAGGGAGTTCAATCCTCTTGGTGAGTTTAGTGAACTGTTAATTGTGTTTCCTCT
** * * * * * *
31625096 GTTTC-TCTGCTAGTTGTGTGTGAAATAC--TGTGTTGACTCTGCATGTGTAAGTAGT---CCAT
130 GTTTCTTC-GCTAACTATATGGGAAATACTTTCTGTTGACTCTGCATATGGAAGTAGTAGCCCAT
* * * * *
31625155 GTAGGATAATTTGGCATTTTGGTGTGATTGACTAGTTTGAGCAATGGAAGAATTAGCT-TAGTAG
194 GTAGGATAA-----CA--TTGATGAGATTGACTAGTTTGAGCAAAGGAAGAATTAACTCAAG-AG
* *
31625219 ACTATGTGCTCCAAT
251 ACTAGGTGCTCAAAT
* ** *
31625234 TTGACTTCTTGTTGAGA-AGTGTCAATGGAGATTTTTAAGGGGTTTTAATTAT-GCGTTAG---T
1 TTGACTTATTGTTGA-ACAGTGTCAATGGAGCCTTTTAAGGGGTTTTAGTTATCG-GTTAGCATT
* * * * *
31625294 GTTGTATCAATGGAGGGGAGTTCAATCATCTTGGTGAGTTCAGTGAACTGTTAATTGTGTTTCCC
64 G-TGTGTCAATGGAAGGGAGTTCAATCCTCTTGGTGAGTTTAGTGAACTGTTAATTGTGTTTCCT
* * * * **
31625359 CTGTTTCTTCACTAACTAAATGGGAAATTCTTTCTGTTGAC-CATGCATACGGAAGTAGTAGCTT
128 CTGTTTCTTCGCTAACTATATGGGAAATACTTTCTGTTGACTC-TGCATATGGAAGTAGTAGCCC
* * ** * * *
31625423 ATCTGGGAT-ATGTTGATGAGATTGACTAGTTTGAGCAAAGGAAGACTTAACTTAATAGACTAGG
192 ATGTAGGATAACATTGATGAGATTGACTAGTTTGAGCAAAGGAAGAATTAACTCAAGAGACTAGG
*
31625487 TGCTCAGAT
257 TGCTCAAAT
* * * ** *
31625496 TTGACTTCTTGTTGAGCAGTCTCAATGGAGGTTTTTAA-GGGTTTTAGTTATCTGTTAGCATTGT
1 TTGACTTATTGTTGAACAGTGTCAATGGAGCCTTTTAAGGGGTTTTAGTTATCGGTTAGCATTGT
* * * *
31625560 GTGTCAATTGGAGGGGAGTTCAATCCTCTTGGTGAGTTTTGTGAAC---T-A--GT-TTTCTTTT
66 GTGTCAA-TGGAAGGGAGTTCAATCCTCTTGGTGAGTTTAGTGAACTGTTAATTGTGTTTCCTCT
* * * * *
31625618 GTTTCTTTGCTAACTATATGTGAAATACTTTGTGTTGACTCTGCATATGTAAGTTGTAGCCCATG
130 GTTTCTTCGCTAACTATATGGGAAATACTTTCTGTTGACTCTGCATATGGAAGTAGTAGCCCATG
* * * ** * * *
31625683 TAGGATGACATTGGTGAGCTTGACTAGTTTGAGTGAGGGAAGAATTTGAC-CTTAGAGACTAGGT
195 TAGGATAACATTGATGAGATTGACTAGTTTGAGCAAAGGAAGAA-TTAACTC-AAGAGACTAGGT
31625747 GCTCAAAT
258 GCTCAAAT
* * * * * *
31625755 TTGACTTCA-TGTTGAGCGGTGTCAATGGGGCTTTTTAAGGGGTTTTA-TTAT-GGCTTTGCGTT
1 TTGACTT-ATTGTTGAACAGTGTCAATGGAGCCTTTTAAGGGGTTTTAGTTATCGG-TTAGCATT
* *
31625817 GTGTGTCAAT-GATCAGGGAGTTCAATCATCTCGGTGAGTTTAGTGAACTGTTAATTGTGTTTCC
64 GTGTGTCAATGGA--AGGGAGTTCAATCCTCTTGGTGAGTTTAGTGAACTGTTAATTGTGTTTCC
* * *
31625881 TCTGTTTCTTCCCTAACTGA-ATGGGAAATACTTTCTGTTGACTTTGCATATGGCAGTAGCT-GC
127 TCTGTTTCTTCGCTAACT-ATATGGGAAATACTTTCTGTTGACTCTGCATATGGAAGTAG-TAGC
** * * * * *
31625944 TTATATAGGAT-ACTTTGATGAGATTGACGAGTTTGAGAAAAGGAAGAATTAACTCAATAGACT-
190 CCATGTAGGATAACATTGATGAGATTGACTAGTTTGAGCAAAGGAAGAATTAACTCAAGAGACTA
*
31626007 GGACGCTCAAAT
255 GG-TGCTCAAAT
* * *
31626019 TTGACTTATTGTTGAACAGTGTCAAAGGAGCCTTTTAAGGGGGTTTTTGTTATCAGTTAGCATTG
1 TTGACTTATTGTTGAACAGTGTCAATGGAGCCTTTTAA-GGGGTTTTAGTTATCGGTTAGCATTG
*
31626084 TGTGTCAATTGG-AGGGAGTTCAATCCTCTTGGTGAGTTCT-GTGAACTAG-TAATCGTGTTTCC
65 TGTGTCAA-TGGAAGGGAGTTCAATCCTCTTGGTGAGTT-TAGTGAACT-GTTAATTGTGTTTCC
* * * * ** *
31626146 TTTGTTTCTTTGCTAACTATATGTGAAATACTTTGTGTTGACTCTGCATATTTAAGTTGTAGCCC
127 TCTGTTTCTTCGCTAACTATATGGGAAATACTTTCTGTTGACTCTGCATATGGAAGTAGTAGCCC
* * **
31626211 ATGTAGGATAACATTGGTGAGATTGACTAGTTTGAGCAAAGGAAGAATTGACTTTAGAGACTAGG
192 ATGTAGGATAACATTGATGAGATTGACTAGTTTGAGCAAAGGAAGAATTAACTCAAGAGACTAGG
**
31626276 TGCTTGAAT
257 TGCTCAAAT
* * * * ****
31626285 TTGACTTCTTGTTCAACGGTGTCAATGGAGCCTTTTAAGGGGTTTTAGTTATTGGTTAGCGCCAT
1 TTGACTTATTGTTGAACAGTGTCAATGGAGCCTTTTAAGGGGTTTTAGTTATCGGTTAGCATTGT
* * * *
31626350 GTGTCAATGGAGGGGAGTT-AAGCCTCTTGGTGAGTTTAGTAAACTATTAATTGTGTTTCCTCTG
66 GTGTCAATGGAAGGGAGTTCAATCCTCTTGGTGAGTTTAGTGAACTGTTAATTGTGTTTCCTCTG
* * * * * *
31626414 TTTCTT---T-GC--T-TGTGAAATAC--TGTGTTGACTCTGCATATGTAACTAGTAG-CCATAT
131 TTTCTTCGCTAACTATATGGGAAATACTTTCTGTTGACTCTGCATATGGAAGTAGTAGCCCATGT
* * * * * * ** *
31626469 -GGATAACATCGGTGAGATTGACTGGTTTGAGCGATGGAGGAATTAACTTGATAGACTAGGTGCT
196 AGGATAACATTGATGAGATTGACTAGTTTGAGCAAAGGAAGAATTAACTCAAGAGACTAGGTGCT
***
31626533 CGTGT
261 CAAAT
* ** ** * *
31626538 TTGACTTCTTCCTGAATGGTGTCAATGGGGCCTTTTAAGGGGCTTTAGTTATCGGTTAGC
1 TTGACTTATTGTTGAACAGTGTCAATGGAGCCTTTTAAGGGGTTTTAGTTATCGGTTAGC
31626598 TGTGTTTAGT
Statistics
Matches: 1339, Mismatches: 227, Indels: 149
0.78 0.13 0.09
Matches are distributed among these distances:
253 111 0.08
254 5 0.00
255 26 0.02
257 73 0.05
258 35 0.03
259 102 0.08
260 10 0.01
261 19 0.01
262 84 0.06
263 13 0.01
264 135 0.10
265 251 0.19
266 172 0.13
267 92 0.07
268 14 0.01
269 1 0.00
270 10 0.01
271 25 0.02
272 56 0.04
273 105 0.08
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (265 bp):
TTGACTTATTGTTGAACAGTGTCAATGGAGCCTTTTAAGGGGTTTTAGTTATCGGTTAGCATTGT
GTGTCAATGGAAGGGAGTTCAATCCTCTTGGTGAGTTTAGTGAACTGTTAATTGTGTTTCCTCTG
TTTCTTCGCTAACTATATGGGAAATACTTTCTGTTGACTCTGCATATGGAAGTAGTAGCCCATGT
AGGATAACATTGATGAGATTGACTAGTTTGAGCAAAGGAAGAATTAACTCAAGAGACTAGGTGCT
CAAAT
Found at i:31632959 original size:3 final size:3
Alignment explanation
Indices: 31632951--31632987 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
31632941 TTTTGGTTTG
31632951 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
31632988 GAATGAGACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:31634598 original size:2 final size:2
Alignment explanation
Indices: 31634593--31634623 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
31634583 TATGTGTGTG
31634593 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
31634624 GAATATTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:31639848 original size:153 final size:153
Alignment explanation
Indices: 31639651--31639956 Score: 603
Period size: 153 Copynumber: 2.0 Consensus size: 153
31639641 TCAAAGAGGA
31639651 GAGGAAAAGATGAAAATATGATGACAATGTCATCTTTTCTTTTTATTTTAACTTATATACCATAA
1 GAGGAAAAGATGAAAATATGATGACAATGTCATCTTTTCTTTTTATTTTAACTTATATACCATAA
31639716 TTAACACTAATTAATTAAAGATTAAACTAATTAAGCTTTGTTTAATTATCAATAATCATAGCTAT
66 TTAACACTAATTAATTAAAGATTAAACTAATTAAGCTTTGTTTAATTATCAATAATCATAGCTAT
31639781 CTATATAAAATAATAGGTCTAAT
131 CTATATAAAATAATAGGTCTAAT
31639804 GAGGAAAAGATGAAAATATGATGACAATGTCATCTTTTCTTTTTATTTTAACTTATATACCATAA
1 GAGGAAAAGATGAAAATATGATGACAATGTCATCTTTTCTTTTTATTTTAACTTATATACCATAA
*
31639869 TTAACACTAATTAATTAAAGATTAAACTAATTAAGCTTTGTTTAATTATCAATAATCATAGTTAT
66 TTAACACTAATTAATTAAAGATTAAACTAATTAAGCTTTGTTTAATTATCAATAATCATAGCTAT
31639934 CTATATAAAATAATAGGTCTAAT
131 CTATATAAAATAATAGGTCTAAT
31639957 ATTTTATTTG
Statistics
Matches: 152, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
153 152 1.00
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.39
Consensus pattern (153 bp):
GAGGAAAAGATGAAAATATGATGACAATGTCATCTTTTCTTTTTATTTTAACTTATATACCATAA
TTAACACTAATTAATTAAAGATTAAACTAATTAAGCTTTGTTTAATTATCAATAATCATAGCTAT
CTATATAAAATAATAGGTCTAAT
Found at i:31640557 original size:60 final size:59
Alignment explanation
Indices: 31640443--31640560 Score: 148
Period size: 60 Copynumber: 2.0 Consensus size: 59
31640433 TTTTGTCAGT
* * * *
31640443 CAACCATGAAAAGTTATAAAATGGTCACTCAACTATTAATAAATTTCTTTTTTGGTCATC
1 CAACCATGAAAAGTTACAAAATAGTCACCCAACTATTAAT-AATTTCTTGTTTGGTCATC
* *
31640503 CAACTATGAAAAGTTACAAAATAGTCACCCAACTATTCAAT-TTTGTCTTGTTTGGTCA
1 CAACCATGAAAAGTTACAAAATAGTCACCCAACTATT-AATAATT-TCTTGTTTGGTCA
31640561 CTAGCTGGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
59 2 0.04
60 45 0.90
61 3 0.06
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (59 bp):
CAACCATGAAAAGTTACAAAATAGTCACCCAACTATTAATAATTTCTTGTTTGGTCATC
Found at i:31642719 original size:11 final size:10
Alignment explanation
Indices: 31642668--31642744 Score: 100
Period size: 11 Copynumber: 7.2 Consensus size: 10
31642658 ACTTAATCCT
31642668 TTCTCTCAAA
1 TTCTCTCAAA
*
31642678 TTCTCCCAAA
1 TTCTCTCAAA
31642688 TTCTCTCTAATA
1 TTCTCTC-AA-A
31642700 TTCTCTCAAA
1 TTCTCTCAAA
31642710 TTCTTCTCAAA
1 TTC-TCTCAAA
31642721 TTCCTCTCAAA
1 TT-CTCTCAAA
31642732 TTCCTCTCAAA
1 TT-CTCTCAAA
31642743 TT
1 TT
31642745 ATTTTTAAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
10 19 0.31
11 33 0.54
12 9 0.15
ACGTcount: A:0.27, C:0.31, G:0.00, T:0.42
Consensus pattern (10 bp):
TTCTCTCAAA
Found at i:31642781 original size:28 final size:29
Alignment explanation
Indices: 31642741--31642796 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
31642731 ATTCCTCTCA
31642741 AATTATTTTTAAAAAAGCTTT-AATTTTT
1 AATTATTTTTAAAAAAGCTTTGAATTTTT
*
31642769 AATTATTTTTAAAAAAGTTTTGAATTTT
1 AATTATTTTTAAAAAAGCTTTGAATTTT
31642797 ATTTTTTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (29 bp):
AATTATTTTTAAAAAAGCTTTGAATTTTT
Found at i:31642815 original size:14 final size:15
Alignment explanation
Indices: 31642786--31642815 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
31642776 TTTAAAAAAG
31642786 TTTTGAATTTTATTT
1 TTTTGAATTTTATTT
31642801 TTTTGAATTTT-TTT
1 TTTTGAATTTTATTT
31642815 T
1 T
31642816 AGATCGTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.77
Consensus pattern (15 bp):
TTTTGAATTTTATTT
Found at i:31643925 original size:7 final size:7
Alignment explanation
Indices: 31643913--31643937 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
31643903 TAGTCAATTG
31643913 GTATTTA
1 GTATTTA
31643920 GTATTTA
1 GTATTTA
31643927 GTATTTA
1 GTATTTA
31643934 GTAT
1 GTAT
31643938 ATATAACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (7 bp):
GTATTTA
Found at i:31644505 original size:30 final size:30
Alignment explanation
Indices: 31644429--31644507 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 30
31644419 GACGACGAAG
*
31644429 CAGGCCCATCAACGAG-GCCCAGACAATCAC
1 CAGGCCCATCAAC-AGCACCCAGACAATCAC
* * * *
31644459 CCGGCCCATTATCAGCACCCATACAATCAC
1 CAGGCCCATCAACAGCACCCAGACAATCAC
*
31644489 CAGGCCCAGCAACAGCACC
1 CAGGCCCATCAACAGCACC
31644508 GACACAGTCA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
29 2 0.05
30 37 0.95
ACGTcount: A:0.32, C:0.43, G:0.16, T:0.09
Consensus pattern (30 bp):
CAGGCCCATCAACAGCACCCAGACAATCAC
Found at i:31644616 original size:18 final size:18
Alignment explanation
Indices: 31644580--31644622 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
31644570 TGTCAGGTGC
* **
31644580 GTATTCTAGCCCTTTTAT
1 GTATCCTAGCCCTGATAT
31644598 GTATCCTAGCCCTGATAT
1 GTATCCTAGCCCTGATAT
*
31644616 GTTTCCT
1 GTATCCT
31644623 TTTTCTAGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.16, C:0.26, G:0.14, T:0.44
Consensus pattern (18 bp):
GTATCCTAGCCCTGATAT
Found at i:31656979 original size:31 final size:31
Alignment explanation
Indices: 31656919--31656982 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
31656909 TTACAAAATG
*
31656919 GTCACTAAACTATTTAAAAGTTTTCATTTAA
1 GTCACTAAACTATTCAAAAGTTTTCATTTAA
* * * *
31656950 GTCACTGAATTATTCAAAATTTTTTATTTAA
1 GTCACTAAACTATTCAAAAGTTTTCATTTAA
31656981 GT
1 GT
31656983 TAATGGGTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.45
Consensus pattern (31 bp):
GTCACTAAACTATTCAAAAGTTTTCATTTAA
Found at i:31658285 original size:155 final size:156
Alignment explanation
Indices: 31657992--31658303 Score: 617
Period size: 155 Copynumber: 2.0 Consensus size: 156
31657982 CGTCAAAGTG
31657992 TAATTTTATCTTTATTAATTTAAAATTTTAAAAATTTCTAAATGACCTAAATAGTAATTTTCCAT
1 TAATTTTATCTTTATTAATTTAAAATTTTAAAAATTTCTAAATGACCTAAATAGTAATTTTCCAT
31658057 TTTAAGGGGGTCGGGCCCCTGCCAGCCCCCGGATTCGCCTCTATTTCATGAAAAATTTTGATAAT
66 TTTAAGGGGGTCGGGCCCCTGCCAGCCCCCGGATTCGCCTCTATTTCATGAAAAATTTTGATAAT
31658122 TCTTAACAGTGAATTTATTAAATGAA
131 TCTTAACAGTGAATTTATTAAATGAA
31658148 TAATTTTATC-TTATTAATTTAAAATTTTAAAAATTTCTAAATGACCTAAATAGTAATTTTCCAT
1 TAATTTTATCTTTATTAATTTAAAATTTTAAAAATTTCTAAATGACCTAAATAGTAATTTTCCAT
31658212 TTTAAGGGGGTCGGGCCCCTGCCAGCCCCCGGATTCGCCTCTATTTCATGAAAAATTTTGATAAT
66 TTTAAGGGGGTCGGGCCCCTGCCAGCCCCCGGATTCGCCTCTATTTCATGAAAAATTTTGATAAT
31658277 TCTTAACAGTGAATTTATTAAATGAA
131 TCTTAACAGTGAATTTATTAAATGAA
31658303 T
1 T
31658304 TTTAAATAAA
Statistics
Matches: 156, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
155 146 0.94
156 10 0.06
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (156 bp):
TAATTTTATCTTTATTAATTTAAAATTTTAAAAATTTCTAAATGACCTAAATAGTAATTTTCCAT
TTTAAGGGGGTCGGGCCCCTGCCAGCCCCCGGATTCGCCTCTATTTCATGAAAAATTTTGATAAT
TCTTAACAGTGAATTTATTAAATGAA
Found at i:31660049 original size:20 final size:20
Alignment explanation
Indices: 31660024--31660063 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
31660014 CATTGAAAAT
*
31660024 ATTTTTTTAATGGTTTATTA
1 ATTTTTTCAATGGTTTATTA
31660044 ATTTTTTCAATGGTTTATTA
1 ATTTTTTCAATGGTTTATTA
31660064 GATAAAGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.03, G:0.10, T:0.62
Consensus pattern (20 bp):
ATTTTTTCAATGGTTTATTA
Found at i:31660928 original size:21 final size:21
Alignment explanation
Indices: 31660904--31660946 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
31660894 TGTTATAACT
31660904 TTTTTTATTTACCAAAATATA
1 TTTTTTATTTACCAAAATATA
31660925 TTTTTTATTTACCAAAATATA
1 TTTTTTATTTACCAAAATATA
31660946 T
1 T
31660947 CAAAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTTTTATTTACCAAAATATA
Found at i:31661195 original size:11 final size:11
Alignment explanation
Indices: 31661179--31661208 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
31661169 GTTGTTGCGG
31661179 AAAAGAAGAGA
1 AAAAGAAGAGA
*
31661190 AAAAGAGGAGA
1 AAAAGAAGAGA
31661201 AAAAGAAG
1 AAAAGAAG
31661209 GTGTTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (11 bp):
AAAAGAAGAGA
Found at i:31661271 original size:19 final size:21
Alignment explanation
Indices: 31661233--31661271 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
31661223 AATAATTGAT
*
31661233 TATATTGTTGTTATTATTTTG
1 TATATTGTTGTTAATATTTTG
31661254 TATATT-TTG-TAATATTTT
1 TATATTGTTGTTAATATTTT
31661272 TTGTTTTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (21 bp):
TATATTGTTGTTAATATTTTG
Found at i:31661333 original size:3 final size:3
Alignment explanation
Indices: 31661317--31661351 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
31661307 AAAATAATAG
*
31661317 TAT TAGT TAG TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT T
31661352 GTTGTTGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:31661356 original size:3 final size:3
Alignment explanation
Indices: 31661350--31661690 Score: 675
Period size: 3 Copynumber: 114.0 Consensus size: 3
31661340 ATTATTATTA
31661350 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
31661398 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
31661446 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
31661494 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
31661542 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
31661590 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
31661638 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
31661686 -TG TTG
1 TTG TTG
31661691 GATGTGTATT
Statistics
Matches: 337, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
2 2 0.01
3 335 0.99
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:31662145 original size:18 final size:18
Alignment explanation
Indices: 31662122--31662157 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
31662112 GGTTGGTGGT
31662122 GAAGAAGAAGGTGCTGGC
1 GAAGAAGAAGGTGCTGGC
*
31662140 GAAGAAGAAGGTGGTGGC
1 GAAGAAGAAGGTGCTGGC
31662158 AATCATTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.08, G:0.47, T:0.11
Consensus pattern (18 bp):
GAAGAAGAAGGTGCTGGC
Found at i:31665996 original size:14 final size:14
Alignment explanation
Indices: 31665977--31666005 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
31665967 GATACTTCCA
31665977 TTACGGGACTCCCG
1 TTACGGGACTCCCG
31665991 TTACGGGACTCCCG
1 TTACGGGACTCCCG
31666005 T
1 T
31666006 CAATTGGGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.34, G:0.28, T:0.24
Consensus pattern (14 bp):
TTACGGGACTCCCG
Found at i:31667665 original size:27 final size:27
Alignment explanation
Indices: 31667607--31667666 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
31667597 CCCCAATGGT
**
31667607 ATTGGCACCATTGGTGCAACCAATTGC
1 ATTGGCACCATTGGTGCAACCAATCCC
* * **
31667634 TTTGGCACCTTTGGTGCCGCCAATCCC
1 ATTGGCACCATTGGTGCAACCAATCCC
31667661 ATTGGC
1 ATTGGC
31667667 GTGACCAATG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.18, C:0.30, G:0.23, T:0.28
Consensus pattern (27 bp):
ATTGGCACCATTGGTGCAACCAATCCC
Found at i:31667758 original size:24 final size:24
Alignment explanation
Indices: 31667731--31667776 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
31667721 TTTGTTTTTT
*
31667731 TATATATTTTAGTAAATAAAAATA
1 TATATATATTAGTAAATAAAAATA
*
31667755 TATATATATTGGTAAATAAAAA
1 TATATATATTAGTAAATAAAAA
31667777 AAGTTATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (24 bp):
TATATATATTAGTAAATAAAAATA
Found at i:31667784 original size:26 final size:25
Alignment explanation
Indices: 31667730--31667789 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
31667720 TTTTGTTTTT
* *
31667730 TTATATATTTTAGTAAATAAAAATA
1 TTATATATATTAGTAAATAAAAAAA
*
31667755 -TATATATATTGGTAAATAAAAAAA
1 TTATATATATTAGTAAATAAAAAAA
31667779 GTTATA-ATATT
1 -TTATATATATT
31667790 TTGATAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 21 0.70
25 5 0.17
26 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.42
Consensus pattern (25 bp):
TTATATATATTAGTAAATAAAAAAA
Found at i:31668269 original size:25 final size:25
Alignment explanation
Indices: 31668213--31668269 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
31668203 AAAATAATTT
**
31668213 TAAACAAATTTATATTAATATTACTA
1 TAAA-AAATTTATATTAATATTAAAA
31668239 TAAAAAATTTATAATTAA-ATTAAAA
1 TAAAAAATTTAT-ATTAATATTAAAA
*
31668264 TTAAAA
1 TAAAAA
31668270 TATGTTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 18 0.67
26 9 0.33
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.39
Consensus pattern (25 bp):
TAAAAAATTTATATTAATATTAAAA
Found at i:31678643 original size:30 final size:29
Alignment explanation
Indices: 31678600--31678657 Score: 107
Period size: 30 Copynumber: 2.0 Consensus size: 29
31678590 AAGGAAATAA
31678600 ATCCTAATTCCTAAGAATCAGTAATTGAT
1 ATCCTAATTCCTAAGAATCAGTAATTGAT
31678629 ATCCTAATTTCCTAAGAATCAGTAATTGA
1 ATCCTAA-TTCCTAAGAATCAGTAATTGA
31678658 GATTAGTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (29 bp):
ATCCTAATTCCTAAGAATCAGTAATTGAT
Found at i:31684701 original size:15 final size:15
Alignment explanation
Indices: 31684681--31684711 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
31684671 TTATCTTCAA
31684681 ACACTGATGTAGTTG
1 ACACTGATGTAGTTG
*
31684696 ACACTGATGTATTTG
1 ACACTGATGTAGTTG
31684711 A
1 A
31684712 GTCAAACCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (15 bp):
ACACTGATGTAGTTG
Found at i:31689590 original size:10 final size:10
Alignment explanation
Indices: 31689561--31689622 Score: 72
Period size: 10 Copynumber: 6.2 Consensus size: 10
31689551 ATAGTTTTTT
* *
31689561 AAATTACAAC
1 AAATTATAAA
*
31689571 AAATTTTAAA
1 AAATTATAAA
31689581 AACA-TATAAA
1 AA-ATTATAAA
31689591 AAATTATAAA
1 AAATTATAAA
31689601 AAATTATAAA
1 AAATTATAAA
*
31689611 ACATTATAAA
1 AAATTATAAA
31689621 AA
1 AA
31689623 TTACGAAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
9 1 0.02
10 42 0.95
11 1 0.02
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.27
Consensus pattern (10 bp):
AAATTATAAA
Found at i:31689595 original size:30 final size:29
Alignment explanation
Indices: 31689561--31689631 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
31689551 ATAGTTTTTT
* *
31689561 AAATTACAACAAATTTTAAAAACA-TATAAA
1 AAATTACAAAAAATTAT-AAAACATTAT-AA
*
31689591 AAATTATAAAAAATTATAAAACATTATAA
1 AAATTACAAAAAATTATAAAACATTATAA
*
31689620 AAATTACGAAAA
1 AAATTACAAAAA
31689632 TAAATGAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
29 18 0.51
30 17 0.49
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.27
Consensus pattern (29 bp):
AAATTACAAAAAATTATAAAACATTATAA
Found at i:31689631 original size:20 final size:20
Alignment explanation
Indices: 31689561--31689631 Score: 56
Period size: 20 Copynumber: 3.5 Consensus size: 20
31689551 ATAGTTTTTT
* * *
31689561 AAATTACAACAAATTTTAAA
1 AAATTAGAAAAAATTATAAA
*
31689581 AACA-TATAAAAAATTATAAA
1 AA-ATTAGAAAAAATTATAAA
* *
31689601 AAATTATAAAACATTAT-AA
1 AAATTAGAAAAAATTATAAA
31689620 AAATTACGAAAA
1 AAATTA-GAAAA
31689632 TAAATGAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
19 9 0.21
20 33 0.77
21 1 0.02
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.27
Consensus pattern (20 bp):
AAATTAGAAAAAATTATAAA
Found at i:31690080 original size:46 final size:46
Alignment explanation
Indices: 31690013--31690102 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
31690003 TATAGCAACA
* *
31690013 AAAGCAAGAACCATCGTCTTTAAATTTTTATATAATCTAAAAGACT
1 AAAGCAAGAACCATCGGCTTTAAATTTTTATATAAACTAAAAGACT
31690059 AAAGCAAGAACCATCGGCTTTAAATTTTTATATAAACTAAAAGA
1 AAAGCAAGAACCATCGGCTTTAAATTTTTATATAAACTAAAAGA
31690103 TTACGTTCAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.30
Consensus pattern (46 bp):
AAAGCAAGAACCATCGGCTTTAAATTTTTATATAAACTAAAAGACT
Found at i:31692625 original size:2 final size:2
Alignment explanation
Indices: 31692618--31692643 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
31692608 AAATTTTTAA
31692618 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
31692644 TTTCCTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:31695373 original size:407 final size:408
Alignment explanation
Indices: 31694602--31695423 Score: 1630
Period size: 407 Copynumber: 2.0 Consensus size: 408
31694592 AGAAATGAAT
31694602 ATATC-ATATATTAAATTTCATGTATTAAAATTATATTTTATAATATATTTTTATAAACTAAAGT
1 ATATCTATATATTAAATTTCATGTATTAAAATTATATTTTATAATATATTTTTATAAACTAAAGT
31694666 TAAGAAATCATTAGTAAAAAATGAATTGAAAGCAAGACAAAGCAAAATATGATGCAAAATCTATA
66 TAAGAAATCATTAGTAAAAAATGAATTGAAAGCAAGACAAAGCAAAATATGATGCAAAATCTATA
31694731 TTACTATATATATAAAAGGAAGCCCTAAGACCTTCTCTTCTTTCACACGCAATTATATATATTTT
131 TTACTATATATATAAAAGGAAGCCCTAAGACCTTCTCTTCTTTCACACGCAATTATATATATTTT
31694796 TACATTATTAATATAATAATTAAATTTCAATTTCCATCCCTAAACTACATTCAGACATTCAGATT
196 TACATTATTAATATAATAATTAAATTTCAATTTCCATCCCTAAACTACATTCAGACATTCAGATT
31694861 TAAGATTTAATTTTTATGCTTTAATTTTTTATTATTTGGCTCTTTTATGTTTAAAATGTTATTAG
261 TAAGATTTAATTTTTATGCTTTAATTTTTTATTATTTGGCTCTTTTATGTTTAAAATGTTATTAG
31694926 TTAGTCTAAATATTTTATTTTGATTAAAATACTAACGTGACTTTTAAAAATTGTTGATACTGTTA
326 TTAGTCTAAATATTTTATTTTGATTAAAATACTAACGTGACTTTTAAAAATTGTTGATACTGTTA
31694991 AAATTCTTTATTAAATTC
391 AAATTCTTTATTAAATTC
31695009 ATATCTATATATTAAA-TTCATGTATTAAAATTATATTTTATAATATATTTTTATAAACTAAAGT
1 ATATCTATATATTAAATTTCATGTATTAAAATTATATTTTATAATATATTTTTATAAACTAAAGT
31695073 TAAGAAATCATTAGTAAAAAATGAATTGAAAGCAAGACAAAGCAAAATATGATGCAAAATCTATA
66 TAAGAAATCATTAGTAAAAAATGAATTGAAAGCAAGACAAAGCAAAATATGATGCAAAATCTATA
31695138 TTACTATATATATAAAAGGAAGCCCTAAGACCTTCTCTTCTTTCACACGCAATTATATATATTTT
131 TTACTATATATATAAAAGGAAGCCCTAAGACCTTCTCTTCTTTCACACGCAATTATATATATTTT
31695203 TACATTATTAATATAATAATTAAATTTCAATTTCCATCCCTAAACTACATTCAGACATTCAGATT
196 TACATTATTAATATAATAATTAAATTTCAATTTCCATCCCTAAACTACATTCAGACATTCAGATT
31695268 TAAGATTTAATTTTTATGCTTTAATTTTTTATTATTTGGCTCTTTTATGTTTAAAATGTTATTAG
261 TAAGATTTAATTTTTATGCTTTAATTTTTTATTATTTGGCTCTTTTATGTTTAAAATGTTATTAG
31695333 TTAGTCTAAATATTTTATTTTGATTAAAATACTAACGTGACTTTTAAAAATTGTTGATACTGTTA
326 TTAGTCTAAATATTTTATTTTGATTAAAATACTAACGTGACTTTTAAAAATTGTTGATACTGTTA
31695398 AAATTCTTTATTAAATTC
391 AAATTCTTTATTAAATTC
31695416 ATATCTAT
1 ATATCTAT
31695424 TACAATGTCA
Statistics
Matches: 414, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
407 404 0.98
408 10 0.02
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (408 bp):
ATATCTATATATTAAATTTCATGTATTAAAATTATATTTTATAATATATTTTTATAAACTAAAGT
TAAGAAATCATTAGTAAAAAATGAATTGAAAGCAAGACAAAGCAAAATATGATGCAAAATCTATA
TTACTATATATATAAAAGGAAGCCCTAAGACCTTCTCTTCTTTCACACGCAATTATATATATTTT
TACATTATTAATATAATAATTAAATTTCAATTTCCATCCCTAAACTACATTCAGACATTCAGATT
TAAGATTTAATTTTTATGCTTTAATTTTTTATTATTTGGCTCTTTTATGTTTAAAATGTTATTAG
TTAGTCTAAATATTTTATTTTGATTAAAATACTAACGTGACTTTTAAAAATTGTTGATACTGTTA
AAATTCTTTATTAAATTC
Found at i:31701867 original size:3 final size:3
Alignment explanation
Indices: 31701859--31701889 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
31701849 CCCTTCTTTA
31701859 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
31701890 GTTAATTTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:31702376 original size:131 final size:129
Alignment explanation
Indices: 31702154--31702487 Score: 374
Period size: 135 Copynumber: 2.5 Consensus size: 129
31702144 TTCTTATTGA
* * * *
31702154 TTGATTTAGCTGTTCTTAGTTCTTT--AAACTACAGCCTTTGCTTTCGTGTTCTTTCAGTTC-AA
1 TTGATTT-GCTGTTCTTAGCTCTTTGCAAATTACAG-CTTTGTTTTTGTGTTCTTTCAGTTCAAA
*
31702216 TTAAAATGGGTTTGTCTGTTTTTAC-TTTTTCTGTACTGTTTGATTCTTATTGACTGAC-CCTTT
64 TTAAAACGGGTTTGTCTGTTTTTACTTTTTTCTGTACTGTTTGATTCTTATTGACTG-CTCCTTT
31702279 TG
128 TG
31702281 TTGATTCTGCTGTTCTTAGCTCTTTGCAAATTACAGTCTTTGATTTTTGTGTTCTTTCAGTTCAA
1 TTGATT-TGCTGTTCTTAGCTCTTTGCAAATTACAG-CTTTG-TTTTTGTGTTCTTTCAGTTCAA
* * * * *
31702346 ATTTAAACGGGTTTGTCTGTTTTTACTTTTTTTTTTTGTATTGTTTGATTTTTATTGATTGCTCC
63 ATTAAAACGGGTTTGTCTGTTTTTAC---TTTTTTCTGTACTGTTTGATTCTTATTGACTGCTCC
31702411 TTTTG
125 TTTTG
* * * *
31702416 TTGATTTTACTGTTCTTAGCTATTGGCAAACTGCACAGCATTTGCTTTTTGTGTTCTTTCAGTTC
1 TTGA-TTTGCTGTTCTTAGCTCTTTGCAAA-T-TACAGC-TTTG-TTTTTGTGTTCTTTCAGTTC
31702481 -AATTAAA
61 AAATTAAA
31702488 GACTGAAATT
Statistics
Matches: 176, Mismatches: 17, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
127 22 0.12
128 1 0.01
129 13 0.07
130 18 0.10
131 25 0.14
134 1 0.01
135 58 0.33
136 10 0.06
137 28 0.16
ACGTcount: A:0.17, C:0.15, G:0.16, T:0.52
Consensus pattern (129 bp):
TTGATTTGCTGTTCTTAGCTCTTTGCAAATTACAGCTTTGTTTTTGTGTTCTTTCAGTTCAAATT
AAAACGGGTTTGTCTGTTTTTACTTTTTTCTGTACTGTTTGATTCTTATTGACTGCTCCTTTTG
Found at i:31705247 original size:18 final size:19
Alignment explanation
Indices: 31705213--31705248 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
31705203 CTTCTTTCTG
31705213 TAGAATTGCAAAGATGAAA
1 TAGAATTGCAAAGATGAAA
*
31705232 TAGAATTG-AGAGATGAA
1 TAGAATTGCAAAGATGAA
31705249 GAATTTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.50, C:0.03, G:0.25, T:0.22
Consensus pattern (19 bp):
TAGAATTGCAAAGATGAAA
Found at i:31709242 original size:21 final size:21
Alignment explanation
Indices: 31709216--31709256 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
31709206 TTCAAGAGTT
*
31709216 TGCTATTTAATGATGTGCTTC
1 TGCTATTTAAAGATGTGCTTC
31709237 TGCTATTTAAAGATGTGCTT
1 TGCTATTTAAAGATGTGCTT
31709257 TTACTTTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.12, G:0.20, T:0.46
Consensus pattern (21 bp):
TGCTATTTAAAGATGTGCTTC
Found at i:31715380 original size:103 final size:106
Alignment explanation
Indices: 31715173--31715383 Score: 277
Period size: 103 Copynumber: 2.0 Consensus size: 106
31715163 GGTGATTTGA
* * * *
31715173 TATCAATTAGTTCTATTGTTAATTACTTGATATTTGATTTCAGACATGGCTAGTTAGCTAGATTA
1 TATCAATTAGTTCTATTGTCAATTACTTGATATTTGATTTCAGACATGGC-AGTTAGCAAAATCA
* *
31715238 AGTCTATGTTTAACTGTGTGGGGTACCTACTAGATTAATATG
65 AGTCTATGTTTAACTGTGAGGAGTACCTACTAGATTAATATG
* * *
31715280 TATCAATTAGTTCTATTGTCGATTACTTGATCTTTTATTTC-GCACAT-G-A-TTAGCAAAATCA
1 TATCAATTAGTTCTATTGTCAATTACTTGATATTTGATTTCAG-ACATGGCAGTTAGCAAAATCA
* *
31715341 AGTCTATGTTTAACTGTGAGGATTTCCTACTAGATTAATATG
65 AGTCTATGTTTAACTGTGAGGAGTACCTACTAGATTAATATG
31715383 T
1 T
31715384 TGTATTTATA
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
103 48 0.52
104 1 0.01
106 2 0.02
107 41 0.45
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.42
Consensus pattern (106 bp):
TATCAATTAGTTCTATTGTCAATTACTTGATATTTGATTTCAGACATGGCAGTTAGCAAAATCAA
GTCTATGTTTAACTGTGAGGAGTACCTACTAGATTAATATG
Found at i:31719181 original size:12 final size:12
Alignment explanation
Indices: 31719164--31719198 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
31719154 ATCAAGTAAG
31719164 TGATTCTGATTA
1 TGATTCTGATTA
*
31719176 TGATTCTGATGA
1 TGATTCTGATTA
*
31719188 TGATTTTGATT
1 TGATTCTGATT
31719199 TCAGCATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.23, C:0.06, G:0.20, T:0.51
Consensus pattern (12 bp):
TGATTCTGATTA
Found at i:31721796 original size:4 final size:4
Alignment explanation
Indices: 31721787--31721829 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
31721777 CTAACTCCCC
31721787 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
31721830 GACAAACAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:31722115 original size:93 final size:94
Alignment explanation
Indices: 31721992--31722208 Score: 255
Period size: 93 Copynumber: 2.4 Consensus size: 94
31721982 TAAGTCCCTG
* * * * *
31721992 TTTTTTTTTTTGCATTCACTTGGGCACTTGAACTTTTATAATGTATCAAAAAGACCCTTAAA-TT
1 TTTTTTTTTTTGCACTCAATTGGGCACTTGAACTTTCAAAATGTATCAAAAAGACCCTCAAATTT
31722056 TTTACAAAAAAA-AGCAATTAAGCCCTTAC
66 TTTACAAAAAAACA-CAATTAAGCCCTTAC
* * * *
31722085 TTTTTTTTTTTGCACTCAATTTGGCACTTGAACTTTCAAAATGTATTAAAAAGGCTCTCAAATTT
1 TTTTTTTTTTTGCACTCAATTGGGCACTTGAACTTTCAAAATGTATCAAAAAGACCCTCAAATTT
*
31722150 TTTTCAAAAAAACACAATTAAGCCC---C
66 TTTACAAAAAAACACAATTAAGCCCTTAC
**** *
31722176 TGCCCTTTTTTGCACTCAATTGGGTACTTGAAC
1 TTTTTTTTTTTGCACTCAATTGGGCACTTGAAC
31722209 CGCCCTTAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
91 28 0.26
93 53 0.50
94 24 0.23
95 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.39
Consensus pattern (94 bp):
TTTTTTTTTTTGCACTCAATTGGGCACTTGAACTTTCAAAATGTATCAAAAAGACCCTCAAATTT
TTTACAAAAAAACACAATTAAGCCCTTAC
Found at i:31722305 original size:25 final size:26
Alignment explanation
Indices: 31722270--31722336 Score: 75
Period size: 25 Copynumber: 2.5 Consensus size: 26
31722260 CATGTGGCAA
31722270 AAAAATGATAAAAATA-AAA-ATTAAT
1 AAAAAT-ATAAAAATATAAATATTAAT
* *
31722295 AAAAGTTATAAAAATATTAAATTTTAAT
1 AAAA-ATATAAAAATA-TAAATATTAAT
31722323 AAAAATATAAAAAT
1 AAAAATATAAAAAT
31722337 TAGAAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
25 13 0.37
26 1 0.03
27 12 0.34
28 9 0.26
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (26 bp):
AAAAATATAAAAATATAAATATTAAT
Found at i:31722307 original size:19 final size:17
Alignment explanation
Indices: 31722270--31722364 Score: 63
Period size: 18 Copynumber: 5.4 Consensus size: 17
31722260 CATGTGGCAA
*
31722270 AAAAATGATAAAA--AT
1 AAAAATTATAAAATTAT
31722285 AAAAATTAATAAAAGTTAT
1 AAAAATT-ATAAAA-TTAT
*
31722304 AAAAA-TATTAAATTTTAAT
1 AAAAATTA-TAAA-ATT-AT
*
31722323 AAAAA-TATAAAAATTAGA
1 AAAAATTAT-AAAATTA-T
31722341 AAAAATTATAAAATGTAT
1 AAAAATTATAAAAT-TAT
31722359 AAAAAT
1 AAAAAT
31722365 GCCCTTTAAC
Statistics
Matches: 64, Mismatches: 5, Indels: 19
0.73 0.06 0.22
Matches are distributed among these distances:
15 6 0.09
16 6 0.09
17 2 0.03
18 26 0.41
19 24 0.38
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.29
Consensus pattern (17 bp):
AAAAATTATAAAATTAT
Found at i:31722315 original size:18 final size:18
Alignment explanation
Indices: 31722283--31722364 Score: 69
Period size: 19 Copynumber: 4.4 Consensus size: 18
31722273 AATGATAAAA
* *
31722283 ATAAAAATTAATAAAAGTT
1 ATAAAAA-TATTAAAAATT
**
31722302 ATAAAAATATTAAATTTT
1 ATAAAAATATTAAAAATT
31722320 AATAAAAATA-TAAAAATT
1 -ATAAAAATATTAAAAATT
*
31722338 AGAAAAA-ATTATAAAATGT
1 ATAAAAATATTA-AAAAT-T
31722357 ATAAAAAT
1 ATAAAAAT
31722365 GCCCTTTAAC
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
16 1 0.02
17 8 0.16
18 19 0.37
19 23 0.45
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.32
Consensus pattern (18 bp):
ATAAAAATATTAAAAATT
Found at i:31722365 original size:10 final size:9
Alignment explanation
Indices: 31722283--31722364 Score: 62
Period size: 10 Copynumber: 8.9 Consensus size: 9
31722273 AATGATAAAA
31722283 ATAAAAATT
1 ATAAAAATT
*
31722292 AATAAAAGTT
1 -ATAAAAATT
31722302 ATAAAAA-T
1 ATAAAAATT
**
31722310 ATTAAATTTT
1 A-TAAAAATT
31722320 AATAAAAA-T
1 -ATAAAAATT
31722329 ATAAAAATT
1 ATAAAAATT
*
31722338 AGAAAAAATT
1 A-TAAAAATT
31722348 AT-AAAATGT
1 ATAAAAAT-T
31722357 ATAAAAAT
1 ATAAAAAT
31722365 GCCCTTTAAC
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
8 14 0.25
9 16 0.28
10 26 0.46
11 1 0.02
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:31722646 original size:9 final size:9
Alignment explanation
Indices: 31722599--31722670 Score: 60
Period size: 9 Copynumber: 8.0 Consensus size: 9
31722589 NNNATGTTTA
*
31722599 ATAAATTTT
1 ATAATTTTT
31722608 ATAATTTTATT
1 ATAA-TTT-TT
*
31722619 ATAA-TTTA
1 ATAATTTTT
*
31722627 ATAATTGTT
1 ATAATTTTT
31722636 ATAATTTTT
1 ATAATTTTT
*
31722645 ATTGATTTTT
1 A-TAATTTTT
31722655 AT--TTTTT
1 ATAATTTTT
31722662 ATAATTTTT
1 ATAATTTTT
31722671 TTCCACATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
7 7 0.14
8 5 0.10
9 23 0.45
10 10 0.20
11 6 0.12
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (9 bp):
ATAATTTTT
Found at i:31724300 original size:32 final size:33
Alignment explanation
Indices: 31724231--31724302 Score: 85
Period size: 35 Copynumber: 2.2 Consensus size: 33
31724221 CCGACGGCCC
* *
31724231 GCCCGAAATATGGGAGGGTTCGGGTAAAAACATAG
1 GCCCGAAATATGGGA--GTTCGGGCAAAAAAATAG
31724266 GCCCGAAATATGGGA-TT-GGGCAAAAAAATGAG
1 GCCCGAAATATGGGAGTTCGGGCAAAAAAAT-AG
31724298 GCCCG
1 GCCCG
31724303 TTTAAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 10 0.29
32 9 0.26
35 15 0.44
ACGTcount: A:0.35, C:0.17, G:0.33, T:0.15
Consensus pattern (33 bp):
GCCCGAAATATGGGAGTTCGGGCAAAAAAATAG
Found at i:31733437 original size:27 final size:27
Alignment explanation
Indices: 31733388--31733450 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
31733378 AAAACATGTT
*
31733388 ATTAATA-TT-TATTCAAAATTTAAGA
1 ATTAATATTTATATTCAAAAGTTAAGA
* * *
31733413 TTTAATATTTATATTTAAAAGTTAATA
1 ATTAATATTTATATTCAAAAGTTAAGA
31733440 ATTAAT-TTTAT
1 ATTAATATTTAT
31733451 TTGGTTTGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
25 6 0.19
26 7 0.23
27 18 0.58
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (27 bp):
ATTAATATTTATATTCAAAAGTTAAGA
Found at i:31734816 original size:22 final size:21
Alignment explanation
Indices: 31734786--31734851 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 21
31734776 TTTTTATTTT
31734786 AAAA-ATTTTTAAAAATTAAA
1 AAAATATTTTTAAAAATTAAA
* **
31734806 AAAAGTATTTTAAAAATATTTTA
1 AAAA-TATTTTTAAAA-ATTAAA
31734829 AAAATA-TTTT-AAAATTAAA
1 AAAATATTTTTAAAAATTAAA
31734848 AAAA
1 AAAA
31734852 ATTAAAAAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
19 8 0.22
20 7 0.19
21 3 0.08
22 11 0.30
23 8 0.22
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
AAAATATTTTTAAAAATTAAA
Found at i:31734825 original size:11 final size:11
Alignment explanation
Indices: 31734780--31734842 Score: 78
Period size: 11 Copynumber: 5.9 Consensus size: 11
31734770 GGCCCATTTT
31734780 TATTTTAAAAA
1 TATTTTAAAAA
31734791 T-TTTT-AAAA
1 TATTTTAAAAA
**
31734800 -ATTAAAAAAA
1 TATTTTAAAAA
31734810 GTATTTTAAAAA
1 -TATTTTAAAAA
31734822 TATTTTAAAAA
1 TATTTTAAAAA
31734833 TATTTTAAAA
1 TATTTTAAAA
31734843 TTAAAAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
9 6 0.14
10 8 0.18
11 22 0.50
12 8 0.18
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:31734843 original size:10 final size:10
Alignment explanation
Indices: 31734780--31734843 Score: 51
Period size: 10 Copynumber: 6.1 Consensus size: 10
31734770 GGCCCATTTT
31734780 TATTTTAAAA
1 TATTTTAAAA
31734790 -ATTTTTAAAA
1 TA-TTTTAAAA
**
31734800 -ATTAAAAAAA
1 TATT-TTAAAA
31734810 GTATTTTAAAAA
1 -TATTTT-AAAA
31734822 TATTTTAAAAA
1 TATTTT-AAAA
31734833 TATTTTAAAA
1 TATTTTAAAA
31734843 T
1 T
31734844 TAAAAAAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
9 3 0.07
10 18 0.40
11 17 0.38
12 7 0.16
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (10 bp):
TATTTTAAAA
Found at i:31743162 original size:11 final size:11
Alignment explanation
Indices: 31743143--31743188 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 11
31743133 TTTTTCCTTT
31743143 TTTTCTTTTTTC
1 TTTT-TTTTTTC
31743155 TTTTTTTTTTC
1 TTTTTTTTTTC
31743166 TCTTTTTTCTCTTC
1 T-TTTTTT-T-TTC
31743180 TTTTTTTTT
1 TTTTTTTTT
31743189 GGCCTGCTGC
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 9 0.29
12 11 0.35
13 7 0.23
14 4 0.13
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:31743169 original size:20 final size:21
Alignment explanation
Indices: 31743140--31743187 Score: 73
Period size: 20 Copynumber: 2.3 Consensus size: 21
31743130 CCTTTTTTCC
31743140 TTTTTTTCTTTTTTCT-TT-T
1 TTTTTTTCTTTTTTCTCTTCT
31743159 TTTTTTCTCTTTTTTCTCTTCT
1 TTTTTT-TCTTTTTTCTCTTCT
31743181 TTTTTTT
1 TTTTTTT
31743188 TGGCCTGCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.23
20 10 0.38
21 3 0.12
22 7 0.27
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTTTCTTTTTTCTCTTCT
Found at i:31743171 original size:27 final size:24
Alignment explanation
Indices: 31743132--31743188 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 24
31743122 AATTGAACCC
*
31743132 TTTTTTCCTTTTTTTCTTTTTTCTTT
1 TTTTTTCCTTTTTTTC--TCTTCTTT
*
31743158 TTTTTTTCTCTTTTTTCTCTTCTTT
1 TTTTTTCCT-TTTTTTCTCTTCTTT
31743183 TTTTTT
1 TTTTTT
31743189 GGCCTGCTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 13 0.46
26 8 0.29
27 7 0.25
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (24 bp):
TTTTTTCCTTTTTTTCTCTTCTTT
Found at i:31743174 original size:9 final size:9
Alignment explanation
Indices: 31743131--31743183 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 9
31743121 AAATTGAACC
31743131 CTTTTTTC-
1 CTTTTTTCT
31743139 CTTTTTT-T
1 CTTTTTTCT
31743147 CTTTTTTCTTT
1 CTTTTTTC--T
*
31743158 TTTTTTTCT
1 CTTTTTTCT
31743167 CTTTTTTCT
1 CTTTTTTCT
31743176 CTTCTTTT
1 CTT-TTTT
31743184 TTTTTGGCCT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
8 14 0.37
9 12 0.32
10 4 0.11
11 8 0.21
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (9 bp):
CTTTTTTCT
Found at i:31743483 original size:17 final size:17
Alignment explanation
Indices: 31743457--31743525 Score: 68
Period size: 17 Copynumber: 3.9 Consensus size: 17
31743447 GTTAAAATTT
*
31743457 TTTTTTTTCCTTTTTCC
1 TTTTTCTTCCTTTTTCC
*
31743474 TTTTTCTTCCTTCTT-C
1 TTTTTCTTCCTTTTTCC
*
31743490 TTCTTCCTTCCTTCTTTCTC
1 TT-TTTCTTCCTT-TTTC-C
*
31743510 TTTTTCTTCTTTTTTC
1 TTTTTCTTCCTTTTTC
31743526 TCCTTCTTCT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
16 3 0.07
17 22 0.52
18 6 0.14
19 8 0.19
20 3 0.07
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTCTTCCTTTTTCC
Found at i:31743992 original size:30 final size:29
Alignment explanation
Indices: 31743882--31744037 Score: 156
Period size: 29 Copynumber: 5.2 Consensus size: 29
31743872 GGCCCAAGTA
*
31743882 TAATTTTAGGAAAATTTAGGAGTCAAAATG
1 TAATTTTA-GAAAATTTAGGGGTCAAAATG
* * * *
31743912 CAATTTCA-AATAGTTTATGGGTCAAAATG
1 TAATTTTAGAA-AATTTAGGGGTCAAAATG
*
31743941 TAA-TTTAGAAAAAGTTTTAGGGGTCAAAATA
1 TAATTTTAG-AAAA--TTTAGGGGTCAAAATG
31743972 TAATTTTAGGAAAATTTAGGGGTCAAAATG
1 TAATTTTA-GAAAATTTAGGGGTCAAAATG
* *
31744002 CAATTTTA-AAATTTTTAGGGGTCAAAATG
1 TAATTTTAGAAA-ATTTAGGGGTCAAAATG
31744031 TAATTTT
1 TAATTTT
31744038 TATTTTTTGT
Statistics
Matches: 104, Mismatches: 14, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
28 8 0.08
29 40 0.38
30 30 0.29
31 17 0.16
32 8 0.08
33 1 0.01
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.36
Consensus pattern (29 bp):
TAATTTTAGAAAATTTAGGGGTCAAAATG
Found at i:31745339 original size:64 final size:66
Alignment explanation
Indices: 31745238--31745369 Score: 223
Period size: 64 Copynumber: 2.0 Consensus size: 66
31745228 CCGAAATTAA
31745238 AAATACCTCAACGTGACCCGAAGCTCAACTCACCTCTGTATTATGAGTTGA-TTT-AAAAAAAAA
1 AAATACCTCAACGTGACCCGAAGCTCAACTCACCTCTGTATTATGAGTTGATTTTGAAAAAAAAA
31745301 G
66 G
* *
31745302 AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTGAAAAAAAA
1 AAATACCTCAACGTGACCCGAAGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTGAAAAAAAA
31745367 AG
65 AG
31745369 A
1 A
31745370 CAGAAATTTT
Statistics
Matches: 63, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
64 49 0.78
66 3 0.05
67 11 0.17
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (66 bp):
AAATACCTCAACGTGACCCGAAGCTCAACTCACCTCTGTATTATGAGTTGATTTTGAAAAAAAAA
G
Found at i:31746240 original size:1 final size:1
Alignment explanation
Indices: 31746236--31746296 Score: 59
Period size: 1 Copynumber: 61.0 Consensus size: 1
31746226 TTTTTCTCTG
* * * * * * *
31746236 TTTTTTTTTATTTTTTTTGTTTTGTTTTGTTTTTTTATTTTTTGTTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
31746297 AGGCATAATA
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.03, C:0.00, G:0.08, T:0.89
Consensus pattern (1 bp):
T
Found at i:31746249 original size:10 final size:10
Alignment explanation
Indices: 31746238--31746296 Score: 66
Period size: 10 Copynumber: 5.7 Consensus size: 10
31746228 TTTCTCTGTT
*
31746238 TTTTTTTATTT
1 TTTTTTT-TTG
31746249 TTTTTGTTTTG
1 TTTTT-TTTTG
31746260 TTTTGTTTTT-
1 TTTT-TTTTTG
*
31746270 TTATTTTTTG
1 TTTTTTTTTG
31746280 TTTTTTTTTG
1 TTTTTTTTTG
31746290 TTTTTTT
1 TTTTTTT
31746297 AGGCATAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
9 5 0.12
10 19 0.45
11 15 0.36
12 3 0.07
ACGTcount: A:0.03, C:0.00, G:0.08, T:0.88
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:31746268 original size:25 final size:25
Alignment explanation
Indices: 31746234--31746297 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
31746224 TCTTTTTCTC
31746234 TGTTTT-TTTTTATT-TTTTTTGTTT
1 TGTTTTGTTTTT-TTATTTTTTGTTT
31746258 TGTTTTGTTTTTTTATTTTTTGTTT
1 TGTTTTGTTTTTTTATTTTTTGTTT
*
31746283 TTTTTTGTTTTTTTA
1 TGTTTTGTTTTTTTA
31746298 GGCATAATAC
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
24 8 0.22
25 29 0.78
ACGTcount: A:0.05, C:0.00, G:0.09, T:0.86
Consensus pattern (25 bp):
TGTTTTGTTTTTTTATTTTTTGTTT
Found at i:31753803 original size:35 final size:35
Alignment explanation
Indices: 31753764--31753875 Score: 84
Period size: 35 Copynumber: 3.1 Consensus size: 35
31753754 ACATGAATTG
*
31753764 TTTTTAAAAAAACCCGAAAATTT-TGAAACACGAGA
1 TTTTT-AAAAAACACGAAAATTTATGAAACACGAGA
*** *
31753799 TTTTTTTGAAACACGAAAATTTATGAAACACGATCAA
1 TTTTTAAAAAACACGAAAATTTATGAAACACGA--GA
*** * *
31753836 TTTTTTTTAAA-ACGAAAATTTTTGAAAAACGAGAA
1 TTTTTAAAAAACACGAAAATTTATGAAACACGAG-A
31753871 TTTTT
1 TTTTT
31753876 TTTTGAAAAC
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
34 13 0.20
35 21 0.33
36 19 0.30
37 11 0.17
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.35
Consensus pattern (35 bp):
TTTTTAAAAAACACGAAAATTTATGAAACACGAGA
Found at i:31753807 original size:18 final size:17
Alignment explanation
Indices: 31753784--31753915 Score: 70
Period size: 18 Copynumber: 7.2 Consensus size: 17
31753774 AACCCGAAAA
31753784 TTTTGAAACACGAGATTT
1 TTTTGAAACACGA-ATTT
**
31753802 TTTTGAAACACGAAAAT
1 TTTTGAAACACGAATTT
*
31753819 TTATGAAACACGATCAATTT
1 TTTTGAAACACG---AATTT
* **
31753839 TTTTTAAA-ACGAAAAT
1 TTTTGAAACACGAATTT
*
31753855 TTTTGAAAAACGAGAATTTTT
1 TTTTGAAACAC--GAA--TTT
*
31753876 TTTTGAAAACACGGAA-AT
1 TTTTG-AAACAC-GAATTT
*
31753894 TTTTGAAACATGGAATTT
1 TTTTGAAACA-CGAATTT
31753912 TTTT
1 TTTT
31753916 TTTTGAAAAC
Statistics
Matches: 86, Mismatches: 17, Indels: 22
0.69 0.14 0.18
Matches are distributed among these distances:
16 10 0.12
17 23 0.27
18 24 0.28
19 6 0.07
20 9 0.10
21 9 0.10
22 5 0.06
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (17 bp):
TTTTGAAACACGAATTT
Found at i:31753827 original size:17 final size:16
Alignment explanation
Indices: 31753773--31753831 Score: 64
Period size: 18 Copynumber: 3.5 Consensus size: 16
31753763 GTTTTTAAAA
*
31753773 AAACCCGAAAATTTTG
1 AAACACGAAAATTTTG
**
31753789 AAACACGAGATTTTTTTG
1 AAACACGA-A-AATTTTG
31753807 AAACACGAAAATTTATG
1 AAACACGAAAATTT-TG
31753824 AAACACGA
1 AAACACGA
31753832 TCAATTTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
16 10 0.29
17 12 0.34
18 13 0.37
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (16 bp):
AAACACGAAAATTTTG
Found at i:31753879 original size:21 final size:21
Alignment explanation
Indices: 31753854--31753994 Score: 63
Period size: 21 Copynumber: 7.1 Consensus size: 21
31753844 AAAACGAAAA
*
31753854 TTTTTGAAAA-ACGAGAATTTT
1 TTTTTGAAAACACG-GAAATTT
31753875 TTTTTGAAAACACGGAAA---
1 TTTTTGAAAACACGGAAATTT
* *
31753893 TTTTTG-AAACATGGAATTTTTT
1 TTTTTGAAAACACGGAA--ATTT
* *
31753915 TTTTTGAAAACA-AGAAA--A
1 TTTTTGAAAACACGGAAATTT
* * * *
31753933 TTTTCG-ATATACGGGAA--T
1 TTTTTGAAAACACGGAAATTT
*
31753951 -TTTTAAAAACACGGGAAATTT
1 TTTTTGAAAACAC-GGAAATTT
*
31753972 TTTTTGAAAACACGAAAATTT
1 TTTTTGAAAACACGGAAATTT
31753993 TT
1 TT
31753995 GAAACACTGG
Statistics
Matches: 88, Mismatches: 19, Indels: 26
0.66 0.14 0.20
Matches are distributed among these distances:
17 15 0.17
18 18 0.20
19 4 0.05
21 23 0.26
22 23 0.26
23 5 0.06
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (21 bp):
TTTTTGAAAACACGGAAATTT
Found at i:31753879 original size:39 final size:38
Alignment explanation
Indices: 31753836--31753954 Score: 107
Period size: 39 Copynumber: 3.1 Consensus size: 38
31753826 ACACGATCAA
31753836 TTTTTTTT-AAAACGAAAATTTTTGAAAAACGAGAA-TT
1 TTTTTTTTAAAAACGAAAATTTTTGAAAAACG-GAATTT
* * * *
31753873 TTTTTTTGAAAACACGGAAATTTTTGAAACATGGAATTT
1 TTTTTTTTAAAA-ACGAAAATTTTTGAAAAACGGAATTT
* * * *
31753912 TTTTTTTTGAAAACAAGAAAATTTTCGATATACGGGAATTT
1 TTTTTTTT-AAAA-ACGAAAATTTTTGAAAAAC-GGAATTT
31753953 TT
1 TT
31753955 AAAAACACGG
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
37 7 0.11
38 6 0.09
39 26 0.39
40 18 0.27
41 9 0.14
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.42
Consensus pattern (38 bp):
TTTTTTTTAAAAACGAAAATTTTTGAAAAACGGAATTT
Found at i:31753936 original size:23 final size:22
Alignment explanation
Indices: 31753893--31753936 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
31753883 AACACGGAAA
* * *
31753893 TTTTTGAAACATGGAATTTTTT
1 TTTTTGAAACAAGAAAATTTTT
31753915 TTTTTGAAAACAAGAAAATTTT
1 TTTTTG-AAACAAGAAAATTTT
31753937 CGATATACGG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.36, C:0.05, G:0.11, T:0.48
Consensus pattern (22 bp):
TTTTTGAAACAAGAAAATTTTT
Found at i:31753952 original size:57 final size:56
Alignment explanation
Indices: 31753912--31754019 Score: 162
Period size: 57 Copynumber: 1.9 Consensus size: 56
31753902 CATGGAATTT
* *
31753912 TTTTTTTTGAAAACAAGAAAATTTTCGATATACGGGAATTTTTAAAAACACGGGAAA
1 TTTTTTTTGAAAACAAGAAAATTTTCGAAACACGGGAATTTTT-AAAACACGGGAAA
* * *
31753969 TTTTTTTTGAAAACACGAAAATTTTTGAAACACTGGAATTTTTAAAACACG
1 TTTTTTTTGAAAACAAGAAAATTTTCGAAACACGGGAATTTTTAAAACACG
31754020 AAGATTTTTG
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
56 8 0.17
57 38 0.83
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (56 bp):
TTTTTTTTGAAAACAAGAAAATTTTCGAAACACGGGAATTTTTAAAACACGGGAAA
Found at i:31753954 original size:40 final size:37
Alignment explanation
Indices: 31753836--31753954 Score: 109
Period size: 40 Copynumber: 3.1 Consensus size: 37
31753826 ACACGATCAA
*
31753836 TTTTTTTT-AAAAC-GAAAATTTTTGAAAAACGAGAA-T
1 TTTTTTTTGAAAACAGAAAATTTTTG--AAACGGGAATT
* *
31753872 TTTTTTTTGAAAACACGGAAATTTTTGAAACATGGAATTT
1 TTTTTTTTGAAAACA-GAAAATTTTTGAAAC-GGGAA-TT
*
31753912 TTTTTTTTGAAAACAAGAAAATTTTCGATATACGGGAATT
1 TTTTTTTTGAAAAC-AGAAAATTTTTGA-A-ACGGGAATT
31753952 TTT
1 TTT
31753955 AAAAACACGG
Statistics
Matches: 68, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
36 8 0.12
37 9 0.13
38 3 0.04
39 10 0.15
40 30 0.44
41 6 0.09
42 2 0.03
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.42
Consensus pattern (37 bp):
TTTTTTTTGAAAACAGAAAATTTTTGAAACGGGAATT
Found at i:31753981 original size:22 final size:21
Alignment explanation
Indices: 31753950--31753994 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
31753940 TATACGGGAA
*
31753950 TTTTTAAAAACACGGGAAATTT
1 TTTTTAAAAACAC-GAAAATTT
*
31753972 TTTTTGAAAACACGAAAATTT
1 TTTTTAAAAACACGAAAATTT
31753993 TT
1 TT
31753995 GAAACACTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (21 bp):
TTTTTAAAAACACGAAAATTT
Found at i:31754018 original size:34 final size:35
Alignment explanation
Indices: 31753972--31754068 Score: 162
Period size: 34 Copynumber: 2.8 Consensus size: 35
31753962 CGGGAAATTT
31753972 TTTTTGAAAACACGAAAATTTTTGAAACACTG-GAA
1 TTTTTGAAAACACGAAAATTTTTGAAACA-TGAGAA
*
31754007 TTTTT-AAAACACGAAGATTTTTGAAACATGAGAA
1 TTTTTGAAAACACGAAAATTTTTGAAACATGAGAA
31754041 TTTTTGAAAACACGAAAATTTTTGAAAC
1 TTTTTGAAAACACGAAAATTTTTGAAAC
31754069 CCGATTTTTT
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
33 2 0.03
34 30 0.52
35 26 0.45
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.33
Consensus pattern (35 bp):
TTTTTGAAAACACGAAAATTTTTGAAACATGAGAA
Found at i:31754068 original size:17 final size:17
Alignment explanation
Indices: 31753773--31754068 Score: 139
Period size: 17 Copynumber: 16.2 Consensus size: 17
31753763 GTTTTTAAAA
*
31753773 AAACCCGAAAA-TTTTG
1 AAACACGAAAATTTTTG
**
31753789 AAACACGAGATTTTTTTG
1 AAACACGA-AAATTTTTG
*
31753807 AAACACGAAAATTTATG
1 AAACACGAAAATTTTTG
* *
31753824 AAACACGATCAATTTTTTTT
1 AAACACGA--AA-ATTTTTG
31753844 AAA-ACGAAAATTTTTG
1 AAACACGAAAATTTTTG
* *
31753860 AAAAACGAGAATTTTTTTTTG
1 AAACACGA-AA---ATTTTTG
*
31753881 AAAACACGGAAATTTTTG
1 -AAACACGAAAATTTTTG
* **
31753899 AAACATGGAATTTTTTTTTTTG
1 AAACA-CGAA----AATTTTTG
* *
31753921 AAAACAAGAAAATTTTCG
1 -AAACACGAAAATTTTTG
* * ** *
31753939 ATATACGGGAATTTTTAA
1 AAACACGAAAATTTTT-G
*
31753957 AAACACGGGAAATTTTTTTTG
1 AAACAC--GAAA--ATTTTTG
31753978 AAAACACGAAAATTTTTG
1 -AAACACGAAAATTTTTG
* *
31753996 AAACACTG-GAATTTTTA
1 AAACAC-GAAAATTTTTG
*
31754013 AAACACGAAGATTTTTG
1 AAACACGAAAATTTTTG
* *
31754030 AAACATGAGAATTTTTG
1 AAACACGAAAATTTTTG
31754047 AAAACACGAAAATTTTTG
1 -AAACACGAAAATTTTTG
31754065 AAAC
1 AAAC
31754069 CCGATTTTTT
Statistics
Matches: 207, Mismatches: 47, Indels: 51
0.68 0.15 0.17
Matches are distributed among these distances:
16 16 0.08
17 79 0.38
18 54 0.26
19 6 0.03
20 13 0.06
21 8 0.04
22 26 0.13
23 5 0.02
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (17 bp):
AAACACGAAAATTTTTG
Found at i:31755109 original size:8 final size:8
Alignment explanation
Indices: 31755096--31755138 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
31755086 CAAATTGAAC
31755096 CCTTTTTT
1 CCTTTTTT
31755104 CCTTTTTTT
1 CC-TTTTTT
*
31755113 TCTTTTTT
1 CCTTTTTT
*
31755121 CTTTTTTT
1 CCTTTTTT
31755129 CTCTTTTTT
1 C-CTTTTTT
31755138 C
1 C
31755139 TCTTCTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
8 15 0.52
9 14 0.48
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (8 bp):
CCTTTTTT
Found at i:31755119 original size:17 final size:17
Alignment explanation
Indices: 31755097--31755149 Score: 72
Period size: 17 Copynumber: 3.0 Consensus size: 17
31755087 AAATTGAACC
31755097 CTTTTTTCCTTTTTTTT
1 CTTTTTTCCTTTTTTTT
31755114 CTTTTTT-CTTTTTTTCT
1 CTTTTTTCCTTTTTTT-T
31755131 CTTTTTTCTCTTCTTTTTT
1 CTTTTTTC-CTT-TTTTTT
31755150 TTTGGCCTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
16 8 0.25
17 15 0.47
19 4 0.12
20 5 0.16
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (17 bp):
CTTTTTTCCTTTTTTTT
Found at i:31755135 original size:24 final size:25
Alignment explanation
Indices: 31755097--31755152 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
31755087 AAATTGAACC
* * *
31755097 CTTTTTTCCTTTTTTTTCT-TTTTT
1 CTTTTTTTCTCTTTTTTCTCTTCTT
31755121 CTTTTTTTCTCTTTTTTCTCTTCTT
1 CTTTTTTTCTCTTTTTTCTCTTCTT
31755146 -TTTTTTT
1 CTTTTTTT
31755153 GGCCTGCTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (25 bp):
CTTTTTTTCTCTTTTTTCTCTTCTT
Found at i:31755138 original size:9 final size:9
Alignment explanation
Indices: 31755097--31755147 Score: 70
Period size: 9 Copynumber: 5.8 Consensus size: 9
31755087 AAATTGAACC
31755097 CTTTTTTC-
1 CTTTTTTCT
*
31755105 CTTTTTTTT
1 CTTTTTTCT
31755114 CTTTTTTCT
1 CTTTTTTCT
31755123 -TTTTTTCT
1 CTTTTTTCT
31755131 CTTTTTTCT
1 CTTTTTTCT
31755140 CTTCTTTT
1 CTT-TTTT
31755148 TTTTTGGCCT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
8 15 0.39
9 19 0.50
10 4 0.11
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
CTTTTTTCT
Found at i:31755152 original size:17 final size:16
Alignment explanation
Indices: 31755098--31755152 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 16
31755088 AATTGAACCC
31755098 TTTTTTC-CTTTTTTT
1 TTTTTTCTCTTTTTTT
31755113 TCTTTTT-TCTTTTTTTCT
1 T-TTTTTCTC-TTTTTT-T
*
31755131 CTTTTTTCTCTTCTTTT
1 -TTTTTTCTCTTTTTTT
31755148 TTTTT
1 TTTTT
31755153 GGCCTGCTGC
Statistics
Matches: 33, Mismatches: 1, Indels: 11
0.73 0.02 0.24
Matches are distributed among these distances:
15 1 0.03
16 11 0.33
17 7 0.21
18 11 0.33
19 3 0.09
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTTCTCTTTTTTT
Found at i:31755167 original size:16 final size:16
Alignment explanation
Indices: 31755148--31755192 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
31755138 CTCTTCTTTT
*
31755148 TTTTTGGCCTGCTGCC
1 TTTTGGGCCTGCTGCC
31755164 TTTTGGGCCTGC-G-C
1 TTTTGGGCCTGCTGCC
*
31755178 TGTTGGGCCTGCTGC
1 TTTTGGGCCTGCTGC
31755193 TGGCGTTGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 12 0.48
15 2 0.08
16 11 0.44
ACGTcount: A:0.00, C:0.29, G:0.33, T:0.38
Consensus pattern (16 bp):
TTTTGGGCCTGCTGCC
Found at i:31755185 original size:14 final size:15
Alignment explanation
Indices: 31755153--31755194 Score: 59
Period size: 14 Copynumber: 2.8 Consensus size: 15
31755143 CTTTTTTTTT
*
31755153 GGCCTGCTGCCTTTTG
1 GGCCTGCTG-CTGTTG
31755169 GGCCTGC-GCTGTTG
1 GGCCTGCTGCTGTTG
31755183 GGCCTGCTGCTG
1 GGCCTGCTGCTG
31755195 GCGTTGCGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 12 0.50
15 5 0.21
16 7 0.29
ACGTcount: A:0.00, C:0.31, G:0.38, T:0.31
Consensus pattern (15 bp):
GGCCTGCTGCTGTTG
Found at i:31755259 original size:17 final size:17
Alignment explanation
Indices: 31755226--31755263 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
31755216 TAGGCCTGTT
*
31755226 GTTGGGCCTGGCGTTGG
1 GTTGGGCCTGGCCTTGG
31755243 GTTGGGCCT-GCACTTGG
1 GTTGGGCCTGGC-CTTGG
31755260 GTTG
1 GTTG
31755264 TTTTTGGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.03, C:0.18, G:0.47, T:0.32
Consensus pattern (17 bp):
GTTGGGCCTGGCCTTGG
Found at i:31755891 original size:30 final size:29
Alignment explanation
Indices: 31755841--31755976 Score: 85
Period size: 29 Copynumber: 4.7 Consensus size: 29
31755831 TAAATGCAGT
* * * *
31755841 AAAATTTTTGGGGCCAAAACAAAATTTTGA
1 AAAAGTTTAGGGGTCAAAACAAAA-TTTCA
* *
31755871 GAAAGTTTAGGGGTCAAAACATAATTTCA
1 AAAAGTTTAGGGGTCAAAACAAAATTTCA
* *** *
31755900 AAAAGTTTATGGGTCAAAATGTAATTTTA
1 AAAAGTTTAGGGGTCAAAACAAAATTTCA
* * * ***
31755929 TGAAA-TTTAAGGGTTAAAATGCAATTTCA
1 -AAAAGTTTAGGGGTCAAAACAAAATTTCA
*
31755958 AAAAGTTTAGGGGTTAAAA
1 AAAAGTTTAGGGGTCAAAA
31755977 TATAATTTTT
Statistics
Matches: 86, Mismatches: 18, Indels: 5
0.79 0.17 0.05
Matches are distributed among these distances:
28 3 0.03
29 61 0.71
30 22 0.26
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.32
Consensus pattern (29 bp):
AAAAGTTTAGGGGTCAAAACAAAATTTCA
Found at i:31755913 original size:29 final size:29
Alignment explanation
Indices: 31755872--31755984 Score: 120
Period size: 29 Copynumber: 3.9 Consensus size: 29
31755862 AAATTTTGAG
*
31755872 AAAGTTTAGGGGTCAAAACATAATTTCAA
1 AAAGTTTAGGGGTCAAAATATAATTTCAA
* * * *
31755901 AAAGTTTATGGGTCAAAATGTAATTTTATG
1 AAAGTTTAGGGGTCAAAATATAATTTCA-A
* * **
31755931 AAA-TTTAAGGGTTAAAATGCAATTTCAA
1 AAAGTTTAGGGGTCAAAATATAATTTCAA
*
31755959 AAAGTTTAGGGGTTAAAATATAATTT
1 AAAGTTTAGGGGTCAAAATATAATTT
31755985 TTTTATTTTT
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.04
29 63 0.91
30 3 0.04
ACGTcount: A:0.42, C:0.05, G:0.18, T:0.35
Consensus pattern (29 bp):
AAAGTTTAGGGGTCAAAATATAATTTCAA
Found at i:31765373 original size:98 final size:97
Alignment explanation
Indices: 31765199--31765387 Score: 281
Period size: 98 Copynumber: 1.9 Consensus size: 97
31765189 TATAATCGGG
* * * * *
31765199 TCTCAATTGAGTTATTAAATTACTAAAAGACTTTTATTTTAACAAAGTAATAAATGTTAACTCAA
1 TCTCAACTCAGTTATTAAATTACTAAAAGACTCTTATTTTAACAAAGCAATAAATATTAACTCAA
* *
31765264 GGGTATTTTTATCCTTTTATATAAAATATCAAA
66 GGGTATCTTTAT-CTTTTACATAAAATATCAAA
*
31765297 TCTCAACTCAGTTGTTAAATTACTAAAATG-CTCTTATTTTAACAAAGCAATAAATATTAACTCA
1 TCTCAACTCAGTTATTAAATTACTAAAA-GACTCTTATTTTAACAAAGCAATAAATATTAACTCA
31765361 AGGGTATCTTTATCTTTTACATAAAAT
65 AGGGTATCTTTATCTTTTACATAAAAT
31765388 CTAGAAATAA
Statistics
Matches: 82, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
97 13 0.16
98 68 0.83
99 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.40
Consensus pattern (97 bp):
TCTCAACTCAGTTATTAAATTACTAAAAGACTCTTATTTTAACAAAGCAATAAATATTAACTCAA
GGGTATCTTTATCTTTTACATAAAATATCAAA
Found at i:31765570 original size:17 final size:18
Alignment explanation
Indices: 31765537--31765570 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
31765527 AATTCTTTTG
*
31765537 TTATAACATTTTTTAATT
1 TTATAACATTTTATAATT
31765555 TTATAA-ATTTTATAAT
1 TTATAACATTTTATAAT
31765571 CTAGTATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (18 bp):
TTATAACATTTTATAATT
Found at i:31765778 original size:28 final size:28
Alignment explanation
Indices: 31765747--31765800 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
31765737 ATTTTTTTTG
*
31765747 AAATTCTAATT-AATTTCACAAATTTTAA
1 AAATTCTAATTAAATCTC-CAAATTTTAA
*
31765775 AAATTTTAATTAAATCTCCAAATTTT
1 AAATTCTAATTAAATCTCCAAATTTT
31765801 TTTGAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (28 bp):
AAATTCTAATTAAATCTCCAAATTTTAA
Found at i:31769457 original size:17 final size:17
Alignment explanation
Indices: 31769435--31769476 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
31769425 TTACGATAAT
31769435 ATAATTTTATCA-TTTTA
1 ATAATTTTAT-ATTTTTA
*
31769452 ATAA-TTTATATTTTTT
1 ATAATTTTATATTTTTA
31769468 ATAATTTTA
1 ATAATTTTA
31769477 AAGAACCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 1 0.05
16 13 0.59
17 8 0.36
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
ATAATTTTATATTTTTA
Found at i:31783891 original size:56 final size:56
Alignment explanation
Indices: 31783821--31783936 Score: 153
Period size: 56 Copynumber: 2.1 Consensus size: 56
31783811 TTTATCTTCC
* * *
31783821 TGAACTTGATAATTGTTCCTATATT-GGGTTGAACTTTTTTTATCCAAATTAATCCT
1 TGAACTTGACAATTGTTCCTATATTAGGCTTAAACTTTTTTT-TCCAAATTAATCCT
* * *
31783877 TGAACTTGACAATTGTTCCTATATTAAGGCTTAAACTTTTTTTTCTAAGTTAGTCCT
1 TGAACTTGACAATTGTTCCTATATT-AGGCTTAAACTTTTTTTTCCAAATTAATCCT
31783934 TGA
1 TGA
31783937 TATTTCCTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
56 24 0.46
57 14 0.27
58 14 0.27
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.46
Consensus pattern (56 bp):
TGAACTTGACAATTGTTCCTATATTAGGCTTAAACTTTTTTTTCCAAATTAATCCT
Found at i:31796023 original size:28 final size:28
Alignment explanation
Indices: 31795990--31796050 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 28
31795980 AAAAATGTTA
*
31795990 TAACATGAT-AACGTAAGTGACTAAAACG
1 TAACAT-ATAAACATAAGTGACTAAAACG
* *
31796018 TAACATTTCAAACATAAGTGACTAAAATG
1 TAACATAT-AAACATAAGTGACTAAAACG
31796047 TAAC
1 TAAC
31796051 TTGAGAGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 1 0.04
28 6 0.21
29 21 0.75
ACGTcount: A:0.48, C:0.15, G:0.13, T:0.25
Consensus pattern (28 bp):
TAACATATAAACATAAGTGACTAAAACG
Found at i:31801205 original size:18 final size:17
Alignment explanation
Indices: 31801158--31801205 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
31801148 TTAATTCTAG
31801158 AAAATCAATAAATATTTA
1 AAAATC-ATAAATATTTA
* *
31801176 AATATTATTAAATATTATA
1 AAAATCA-TAAATATT-TA
31801195 AAAATCATAAA
1 AAAATCATAAA
31801206 AATGTTATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
17 1 0.04
18 16 0.67
19 7 0.29
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAATCATAAATATTTA
Found at i:31802877 original size:29 final size:29
Alignment explanation
Indices: 31802834--31802914 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 29
31802824 CATTCAGCCG
*
31802834 TCTTTTTT-TGTATTATTTTGGTAAATAA
1 TCTTTTTTGTATATTATTTTGGTAAATAA
* ** *
31802862 TCTTTTTTGTATATTATTTTAGTATTTTTA
1 TCTTTTTTGTATATTATTTTGGTA-AATAA
31802892 T-TTTTTTGTA-A-TATTTTGGTAAA
1 TCTTTTTTGTATATTATTTTGGTAAA
31802915 AAACCCTGGT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
27 9 0.21
28 9 0.21
29 22 0.51
30 3 0.07
ACGTcount: A:0.23, C:0.02, G:0.10, T:0.64
Consensus pattern (29 bp):
TCTTTTTTGTATATTATTTTGGTAAATAA
Found at i:31803650 original size:26 final size:27
Alignment explanation
Indices: 31803608--31803661 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
31803598 TTTTTATCAA
*
31803608 ATACAAATACTATATTAAATAAAA-ATC
1 ATACAAATACTACATTAAA-AAAATATC
31803635 ATAC-AATACTACATTAAAAAAATATC
1 ATACAAATACTACATTAAAAAAATATC
31803661 A
1 A
31803662 AATTAAAGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 4 0.16
26 17 0.68
27 4 0.16
ACGTcount: A:0.59, C:0.13, G:0.00, T:0.28
Consensus pattern (27 bp):
ATACAAATACTACATTAAAAAAATATC
Found at i:31814932 original size:2 final size:2
Alignment explanation
Indices: 31814883--31814917 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
31814873 AAGGCATAAA
31814883 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
31814918 TAAACTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:31815145 original size:11 final size:12
Alignment explanation
Indices: 31815115--31815150 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
31815105 GTTCACACAT
*
31815115 TCGATTATAATA
1 TCGATAATAATA
31815127 TCGATAATAATA
1 TCGATAATAATA
31815139 T-GATAATAATA
1 TCGATAATAATA
31815150 T
1 T
31815151 TGTATAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 11 0.48
12 12 0.52
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (12 bp):
TCGATAATAATA
Found at i:31815679 original size:26 final size:28
Alignment explanation
Indices: 31815631--31815684 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 28
31815621 TTTGTCACTG
*
31815631 TTTTAAAACAAAAAAACAGAACCCTTCC
1 TTTTAAAACAAAAAAACAAAACCCTTCC
*
31815659 TTTTAAAA-AAAAAAA-AAAACCTTTCC
1 TTTTAAAACAAAAAAACAAAACCCTTCC
31815685 CCTCCTCCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 9 0.38
27 7 0.29
28 8 0.33
ACGTcount: A:0.54, C:0.20, G:0.02, T:0.24
Consensus pattern (28 bp):
TTTTAAAACAAAAAAACAAAACCCTTCC
Found at i:31819584 original size:84 final size:83
Alignment explanation
Indices: 31819417--31819622 Score: 195
Period size: 84 Copynumber: 2.5 Consensus size: 83
31819407 AATTTAGTTT
* * * * *
31819417 TCTTATAAATAAA-AATATTATAAATTAATATATAGTAAAATTGTACTTTGATCTCTTAAAATGA
1 TCTTATAAATAAAGAA-ATTATAAATTAATATATAGTAAAATTGTACTTTAACCCCTAAAAATAA
**** *
31819481 ATTCTTTTTCAATTCAATCC
65 AAAAATTAT-AATTCAATCC
*
31819501 TCTTATAAATAAAGAAATTATAAATTAATGTATAGTAAAATTGTACTTTAACCCCCTAAAAATAA
1 TCTTATAAATAAAGAAATTATAAATTAATATATAGTAAAATTGTACTTTAA-CCCCTAAAAAT-A
*
31819566 AAAAAATTAT-ATTTAATCC
64 AAAAAATTATAATTCAATCC
* * * *
31819585 -CTTTAAAAATTATGAAATTATAAATTAATACATA-TAAA
1 TC-TTATAAATAAAGAAATTATAAATTAATATATAGTAAA
31819623 CTTATATTTT
Statistics
Matches: 101, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
83 5 0.05
84 81 0.80
85 10 0.10
86 5 0.05
ACGTcount: A:0.48, C:0.10, G:0.04, T:0.38
Consensus pattern (83 bp):
TCTTATAAATAAAGAAATTATAAATTAATATATAGTAAAATTGTACTTTAACCCCTAAAAATAAA
AAAATTATAATTCAATCC
Found at i:31821567 original size:19 final size:19
Alignment explanation
Indices: 31821530--31821576 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
31821520 ATATTTTAAC
31821530 CTAAATAATAATTTAAATA
1 CTAAATAATAATTTAAATA
* *
31821549 TTAAATAAGTGATTT-AATA
1 CTAAATAA-TAATTTAAATA
31821568 CTAAA-AATA
1 CTAAATAATA
31821577 TCAGATGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
17 1 0.04
18 2 0.09
19 15 0.65
20 5 0.22
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.36
Consensus pattern (19 bp):
CTAAATAATAATTTAAATA
Found at i:31829860 original size:26 final size:22
Alignment explanation
Indices: 31829831--31829886 Score: 58
Period size: 26 Copynumber: 2.4 Consensus size: 22
31829821 CACAAATTTT
31829831 TATAATATATTTTTTAGGATTAATAA
1 TATAATATATTTTTT--G-TT-ATAA
* *
31829857 TATAAGAAATTTTTTGTTATAA
1 TATAATATATTTTTTGTTATAA
31829879 TATAATAT
1 TATAATAT
31829887 TTATAACTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 10 0.38
23 2 0.08
24 1 0.04
26 13 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (22 bp):
TATAATATATTTTTTGTTATAA
Found at i:31830601 original size:2 final size:2
Alignment explanation
Indices: 31830594--31830618 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
31830584 NNNNNNNNNN
31830594 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
31830619 TTTCAAGCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:31830742 original size:24 final size:24
Alignment explanation
Indices: 31830715--31830760 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
31830705 ACTTTGAGAA
31830715 GCCTAATTAAAATTTTCAAAAAGT
1 GCCTAATTAAAATTTTCAAAAAGT
31830739 GCCTAATTAAAATTTTCAAAAA
1 GCCTAATTAAAATTTTCAAAAA
31830761 TTATAAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.33
Consensus pattern (24 bp):
GCCTAATTAAAATTTTCAAAAAGT
Found at i:31832836 original size:61 final size:61
Alignment explanation
Indices: 31832689--31832843 Score: 170
Period size: 61 Copynumber: 2.6 Consensus size: 61
31832679 GCCAACTGGC
* * * * * * * *
31832689 GACCAAAAAAG-ACAAAATTGTATAGTTGGATGATTATTTTGTAATTTTTTATAGTTGGGT
1 GACCAAAAAAGAAAAAAAATATATAGTTGGGTGATCATTTTGTAACTTTTCATAGTTGGAT
* *** *
31832749 GGCCAAAATAAGAAATTTACTA-ATAGTTGGGTGATCATTTTGTAACTTTTCATAGTTGGAT
1 GACCAAAA-AAGAAAAAAAATATATAGTTGGGTGATCATTTTGTAACTTTTCATAGTTGGAT
31832810 GACCAAAAAAGAAAAAAAATATATAGTTGGGTGA
1 GACCAAAAAAGAAAAAAAATATATAGTTGGGTGA
31832844 CTACTAACAT
Statistics
Matches: 75, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
60 16 0.21
61 56 0.75
62 3 0.04
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (61 bp):
GACCAAAAAAGAAAAAAAATATATAGTTGGGTGATCATTTTGTAACTTTTCATAGTTGGAT
Found at i:31837472 original size:15 final size:14
Alignment explanation
Indices: 31837447--31837491 Score: 56
Period size: 13 Copynumber: 3.1 Consensus size: 14
31837437 CAATTCATCA
31837447 TATATTTTAAAATAT
1 TATA-TTTAAAATAT
31837462 TCATATTTAAAAT-T
1 T-ATATTTAAAATAT
*
31837476 TATATTAAAAATAT
1 TATATTTAAAATAT
31837490 TA
1 TA
31837492 AAATATTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 10 0.37
14 5 0.19
15 9 0.33
16 3 0.11
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
TATATTTAAAATAT
Found at i:31843580 original size:153 final size:154
Alignment explanation
Indices: 31843296--31843584 Score: 413
Period size: 153 Copynumber: 1.9 Consensus size: 154
31843286 GTAAAAATAT
* *
31843296 CAAAACCTACAACTTGCAACAAACAATGATCCCTTTCCCGGGACTTAAAACATCGGTCGCAACAC
1 CAAAACCTACAACTTGCAACAAACAATGATCCCTTTCCCGAGACTTAAAACATCAGTCGCAACAC
* *
31843361 GATGTTATGATCATTATTTTGTGATTGCAGCTCTTTCTACCTCTTATATTCACCACAATTGGCCA
66 GATGTTATGATCATTATTTTGTGATTCCAGCTCTTTCTACCTCTTATATTCACCACAATTGACCA
31843426 AAGTAGCATGTATGATTGATCCAC
131 AAGTAGCATGTATGATTGATCCAC
* * * **
31843450 CAAAGCCTACAACTTGCAATAGACAATGA-CCCTTTTCCCGAGACTT-AAACATCAGTTTCAACA
1 CAAAACCTACAACTTGCAACAAACAATGATCCC-TTTCCCGAGACTTAAAACATCAGTCGCAACA
* * * * *
31843513 TGATGTTATGATCCTTGTTTTGTGATTCCGGC-CTTTTCTACCTCTTATATTCATCACAATTGAC
65 CGATGTTATGATCATTATTTTGTGATTCCAGCTC-TTTCTACCTCTTATATTCACCACAATTGAC
31843577 CAAAGTAG
129 CAAAGTAG
31843585 GTAAAAGTAC
Statistics
Matches: 119, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
152 1 0.01
153 80 0.67
154 38 0.32
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (154 bp):
CAAAACCTACAACTTGCAACAAACAATGATCCCTTTCCCGAGACTTAAAACATCAGTCGCAACAC
GATGTTATGATCATTATTTTGTGATTCCAGCTCTTTCTACCTCTTATATTCACCACAATTGACCA
AAGTAGCATGTATGATTGATCCAC
Found at i:31845797 original size:15 final size:15
Alignment explanation
Indices: 31845777--31845806 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
31845767 TTTTTTATTT
31845777 AAAAATACAAGTTCA
1 AAAAATACAAGTTCA
31845792 AAAAATACAAGTTCA
1 AAAAATACAAGTTCA
31845807 GTTGCTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (15 bp):
AAAAATACAAGTTCA
Found at i:31855785 original size:126 final size:125
Alignment explanation
Indices: 31855608--31855874 Score: 446
Period size: 126 Copynumber: 2.1 Consensus size: 125
31855598 AATATTAGGT
* *
31855608 AAATAAATATAAAAAG-AAATATAATAGAAATAAGAATGTGAAACTAATTAATTTAATAATAAAA
1 AAATAAATA-AAAAGGAAAATATAATAGAAATAAGAATATGAAACTAATTAATTTAATAATAAAA
31855672 TAGCAAAAATAACAAAAAGGGGCTAAATTGAGTTTTAAAACAGAAATTTAGGGCAAATCAG
65 TAGCAAAAATAACAAAAAGGGGCTAAATTGAGTTTTAAAACAGAAATTTAGGGCAAATCAG
* * * * *
31855733 AAATAAATAAAAAGGAAAATAATAATAGTAATAATAATATTAGATTAATTAATTTAATAATAAAA
1 AAATAAATAAAAAGGAAAAT-ATAATAGAAATAAGAATATGAAACTAATTAATTTAATAATAAAA
31855798 TAGCAAAAATAACAAAAAGGGGCTAAATTGAGTTTTAAAACAGAAATTTAGGGCAAATCAG
65 TAGCAAAAATAACAAAAAGGGGCTAAATTGAGTTTTAAAACAGAAATTTAGGGCAAATCAG
31855859 AAATAAATAAAAAGGA
1 AAATAAATAAAAAGGA
31855875 CAAGGACCAA
Statistics
Matches: 133, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
124 5 0.04
125 13 0.10
126 115 0.86
ACGTcount: A:0.58, C:0.05, G:0.13, T:0.24
Consensus pattern (125 bp):
AAATAAATAAAAAGGAAAATATAATAGAAATAAGAATATGAAACTAATTAATTTAATAATAAAAT
AGCAAAAATAACAAAAAGGGGCTAAATTGAGTTTTAAAACAGAAATTTAGGGCAAATCAG
Found at i:31855987 original size:24 final size:27
Alignment explanation
Indices: 31855937--31856004 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 27
31855927 AAAAATAAAA
31855937 ATTTACCAAAATATTATAACTTTTTTT
1 ATTTACCAAAATATTATAACTTTTTTT
* *
31855964 ATTTACTAAAATATTACT--TTTTTTATT
1 ATTTACCAAAATATTA-TAACTTTTT-TT
31855991 ATTTACCAAAATAT
1 ATTTACCAAAATAT
31856005 ATCAAAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 5 0.14
27 30 0.83
28 1 0.03
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (27 bp):
ATTTACCAAAATATTATAACTTTTTTT
Found at i:31856310 original size:19 final size:19
Alignment explanation
Indices: 31856283--31856389 Score: 128
Period size: 19 Copynumber: 5.7 Consensus size: 19
31856273 TCAACTCACT
*
31856283 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
**
31856302 TTTTAATTTAATAA-AATA
1 TTTTAATTTAATAACTCTA
* *
31856320 TTCTCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
*
31856339 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACTCTA
* *
31856357 TTCTCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
31856376 TTTTAATTTAATAA
1 TTTTAATTTAATAA
31856390 ATAAATAAAA
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
18 29 0.41
19 42 0.59
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (19 bp):
TTTTAATTTAATAACTCTA
Found at i:31856333 original size:37 final size:37
Alignment explanation
Indices: 31856288--31856390 Score: 197
Period size: 37 Copynumber: 2.8 Consensus size: 37
31856278 TCACTTTTTT
31856288 ATTTAATAACTCTATTTTAATTTAATAAAATATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAAATATTCTC
*
31856325 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAAATATTCTC
31856362 ATTTAATAACTCTATTTTAATTTAATAAA
1 ATTTAATAACTCTATTTTAATTTAATAAA
31856391 TAAATAAAAA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.49
Consensus pattern (37 bp):
ATTTAATAACTCTATTTTAATTTAATAAAATATTCTC
Found at i:31856752 original size:28 final size:29
Alignment explanation
Indices: 31856694--31856764 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 29
31856684 TTTTTTTTTT
31856694 ATATTTTGGTAAATAATAAAAAAAAAGTA
1 ATATTTTGGTAAATAATAAAAAAAAAGTA
**
31856723 ATATTTTGGTAAATAA-AAAAAAGTTA-TA
1 ATATTTTGGTAAATAATAAAAAA-AAAGTA
31856751 ATATTTTGGTAAAT
1 ATATTTTGGTAAAT
31856765 TTTTATTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
28 22 0.56
29 17 0.44
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (29 bp):
ATATTTTGGTAAATAATAAAAAAAAAGTA
Found at i:31857909 original size:33 final size:33
Alignment explanation
Indices: 31857867--31857937 Score: 142
Period size: 33 Copynumber: 2.2 Consensus size: 33
31857857 AGCTTGGCCC
31857867 TAACGTGTAAAGAAATATAATATTCCTAACTTT
1 TAACGTGTAAAGAAATATAATATTCCTAACTTT
31857900 TAACGTGTAAAGAAATATAATATTCCTAACTTT
1 TAACGTGTAAAGAAATATAATATTCCTAACTTT
31857933 TAACG
1 TAACG
31857938 ACATTGTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (33 bp):
TAACGTGTAAAGAAATATAATATTCCTAACTTT
Found at i:31860458 original size:30 final size:29
Alignment explanation
Indices: 31860395--31860467 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 29
31860385 ATTATATATA
* *
31860395 TGAATTTTAATTTGGTACAATTATACACG
1 TGAAATTTAATTTGGTACAAATATACACG
** * *
31860424 TGAAATTATAATTTGGTTTAAATATATACT
1 TGAAATT-TAATTTGGTACAAATATACACG
31860454 TGAAACTTTAATTT
1 TGAAA-TTTAATTT
31860468 TGATTTAATC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
29 6 0.17
30 28 0.78
31 2 0.06
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.45
Consensus pattern (29 bp):
TGAAATTTAATTTGGTACAAATATACACG
Found at i:31861229 original size:70 final size:69
Alignment explanation
Indices: 31861073--31861207 Score: 204
Period size: 70 Copynumber: 2.0 Consensus size: 69
31861063 TATGGATCTT
*
31861073 GAAGGAACCTCAAAATATATAATGAAAACTACTCCATTGACAAGATATAAATTATTAAGCCTTGA
1 GAAGGAACCACAAAATATATAATGAAAACTACTCCATTGACAAGATATAAA-TATTAAGCCTTGA
*
31861138 AATTT
65 AATTA
* *
31861143 GAAGGAACCTCAAAATATATAATGAAAACTACTCCATTGACAATATAT-AA-ATT-AGCCTTGAA
1 GAAGGAACCACAAAATATATAATGAAAACTACTCCATTGACAAGATATAAATATTAAGCCTTGAA
31861205 ATT
66 ATT
31861208 CCAGACATTG
Statistics
Matches: 64, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
66 12 0.19
67 3 0.05
69 2 0.03
70 47 0.73
ACGTcount: A:0.46, C:0.15, G:0.11, T:0.28
Consensus pattern (69 bp):
GAAGGAACCACAAAATATATAATGAAAACTACTCCATTGACAAGATATAAATATTAAGCCTTGAA
ATTA
Found at i:31870057 original size:33 final size:34
Alignment explanation
Indices: 31870015--31870213 Score: 111
Period size: 33 Copynumber: 5.9 Consensus size: 34
31870005 GGAATGTTTA
31870015 AATG-TAAGACCATAGCTGGGCTATGGCA-TTTT
1 AATGATAAGACCATAGCTGGGCTATGGCACTTTT
* ** * * * *
31870047 AATGAAAAGACCATAATTGGGTTATGACACCTTG
1 AATGATAAGACCATAGCTGGGCTATGGCACTTTT
* * * * * *
31870081 AACG-TAAGACCATGGTTGGACCATGGCAGTATAGTT
1 AATGATAAGACCATAGCTGGGCTATGGCACT-T--TT
* *
31870117 ACATGTGTAAGACCATAGCTGGGCTATGGCA-TTCT
1 A-ATG-ATAAGACCATAGCTGGGCTATGGCACTTTT
* * ***
31870152 AATGATAAGACCATAACTGGGTTATGGCACTACA
1 AATGATAAGACCATAGCTGGGCTATGGCACTTTT
* * *
31870186 AATG-TAAGACCATGGCAGGGCCATGGCA
1 AATGATAAGACCATAGCTGGGCTATGGCA
31870214 ATTGCATGTG
Statistics
Matches: 124, Mismatches: 34, Indels: 17
0.71 0.19 0.10
Matches are distributed among these distances:
32 4 0.03
33 77 0.62
34 15 0.12
35 2 0.02
36 2 0.02
37 3 0.02
38 1 0.01
39 20 0.16
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (34 bp):
AATGATAAGACCATAGCTGGGCTATGGCACTTTT
Found at i:31870162 original size:105 final size:101
Alignment explanation
Indices: 31869984--31870177 Score: 291
Period size: 105 Copynumber: 1.9 Consensus size: 101
31869974 AATTGACGGA
*
31869984 TAAGACCATGGTTGGACCATGGGAATGTTTAAATGTAAGACCATAGCTGGGCTATGGCATTTTAA
1 TAAGACCATGGTTGGACCATGGGAATGTTTAAATGTAAGACCATAGCTGGGCTATGGCATTCTAA
*
31870049 TGAAAAGACCATAATTGGGTTATGACACCTTGAACG
66 TGAAAAGACCATAACTGGGTTATGACACCTTGAACG
* *
31870085 TAAGACCATGGTTGGACCATGGCAGTATAG-TTACATGTGTAAGACCATAGCTGGGCTATGGCAT
1 TAAGACCATGGTTGGACCATGG--GAAT-GTTTA-A-ATGTAAGACCATAGCTGGGCTATGGCAT
*
31870149 TCTAATGATAAGACCATAACTGGGTTATG
61 TCTAATGAAAAGACCATAACTGGGTTATG
31870178 GCACTACAAA
Statistics
Matches: 83, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
101 22 0.27
103 6 0.07
104 2 0.02
105 53 0.64
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.28
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGGAATGTTTAAATGTAAGACCATAGCTGGGCTATGGCATTCTAA
TGAAAAGACCATAACTGGGTTATGACACCTTGAACG
Done.