Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold806

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6053
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.28

Warning! 1020 characters in sequence are not A, C, G, or T


Found at i:1676 original size:29 final size:29

Alignment explanation


    Indices: 1634--1706  Score: 119
    Period size: 29  Copynumber: 2.5  Consensus size: 29

       1624 TTAGATATTA

                                 * *     
       1634 TTAAATATGTCCTAATTAGTTTAGGTGTT
          1 TTAAATATGTCCTAATTAGTTCAAGTGTT

                *                        
       1663 TTAATTATGTCCTAATTAGTTCAAGTGTT
          1 TTAAATATGTCCTAATTAGTTCAAGTGTT

                           
       1692 TTAAATATGTCCTAA
          1 TTAAATATGTCCTAA

       1707 ACTAATACAT


Statistics
Matches: 40,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  29   40  1.00

ACGTcount: A:0.30, C:0.10, G:0.14, T:0.47


Consensus pattern (29 bp):   
TTAAATATGTCCTAATTAGTTCAAGTGTT

Found at i:3228 original size:17 final size:17

Alignment explanation


    Indices: 3208--3244  Score: 74
    Period size: 17  Copynumber: 2.2  Consensus size: 17

       3198 GCTTAAAAAC

                             
       3208 AAGAATGAACCAACACT
          1 AAGAATGAACCAACACT

                             
       3225 AAGAATGAACCAACACT
          1 AAGAATGAACCAACACT

               
       3242 AAG
          1 AAG

       3245 GAAAATGTTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.54, C:0.22, G:0.14, T:0.11


Consensus pattern (17 bp):   
AAGAATGAACCAACACT
Done.