Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold980

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3637
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.31


Found at i:1699 original size:100 final size:100

Alignment explanation


    Indices: 1526--1724  Score: 389
    Period size: 100  Copynumber: 2.0  Consensus size: 100

       1516 GGTCCACTCT

                                                                 *           
       1526 TCTTCGATCTTCGCTTTCAACACTTTTCCATAAATTTTACTTATCGTTCCTGTTACCGCTAACCC
          1 TCTTCGATCTTCGCTTTCAACACTTTTCCATAAATTTTACTTATCGTTCCTGTCACCGCTAACCC

                                               
       1591 TCTGTAGTTCCCACAGTCATCCTTCCTTCCTTTTC
         66 TCTGTAGTTCCCACAGTCATCCTTCCTTCCTTTTC

                                                                             
       1626 TCTTCGATCTTCGCTTTCAACACTTTTCCATAAATTTTACTTATCGTTCCTGTCACCGCTAACCC
          1 TCTTCGATCTTCGCTTTCAACACTTTTCCATAAATTTTACTTATCGTTCCTGTCACCGCTAACCC

                                              
       1691 TCTGTAGTTCCCACAGTCATCCTTCCTTCCTTTT
         66 TCTGTAGTTCCCACAGTCATCCTTCCTTCCTTTT

       1725 TTATGCGACG


Statistics
Matches: 98,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 100   98  1.00

ACGTcount: A:0.17, C:0.33, G:0.08, T:0.42


Consensus pattern (100 bp):   
TCTTCGATCTTCGCTTTCAACACTTTTCCATAAATTTTACTTATCGTTCCTGTCACCGCTAACCC
TCTGTAGTTCCCACAGTCATCCTTCCTTCCTTTTC
Done.