Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4645

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 303

Length: 506
ACGTcount: A:0.48, C:0.08, G:0.11, T:0.33


Found at i:347 original size:31 final size:30

Alignment explanation


    Indices: 304--371  Score: 84
    Period size: 31  Copynumber: 2.2  Consensus size: 30

        294 TAAAAGATGC

                *                          
        304 ATATGTATTATAAAATGTC-AACGCGTATAT
          1 ATATATATTATAAAA-GTCAAACGCGTATAT

                                  *        
        334 ATATATATATATAAAAGTCAAATGCGTATAT
          1 ATATATAT-TATAAAAGTCAAACGCGTATAT

              *    
        365 ATGTATA
          1 ATATATA

        372 AAAGTCATGA


Statistics
Matches: 33,  Mismatches: 3, Indels: 3
        0.85            0.08        0.08

Matches are distributed among these distances:
  30   10  0.30
  31   23  0.70

ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37


Consensus pattern (30 bp):   
ATATATATTATAAAAGTCAAACGCGTATAT
Done.