Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold485
Parameters: 2 7 7 80 10 50 1000
Length:  155029

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7038--7076
19
2.0
21
85
10
55
69
5
10
15
1.34
7275--7350
21
3.7
21
91
7
129
36
10
10
42
1.74
8534--8563
1
30.0
1
93
0
51
96
0
3
0
0.21
21634--21669
15
2.5
14
86
8
54
44
8
0
47
1.33
22218--22278
27
2.5
23
72
20
61
21
0
3
75
0.94
22223--22280
16
3.7
16
78
15
59
20
0
3
75
0.94
23623--23701
5
15.4
5
71
23
58
77
1
1
20
0.91
23616--23683
4
16.2
4
77
17
59
75
0
1
23
0.89
23616--23701
30
2.8
29
87
8
118
76
1
1
20
0.91
23619--23702
8
10.1
8
71
14
55
77
1
1
20
0.90
23616--23703
40
2.2
39
79
15
101
76
1
1
21
0.92
27744--27772
12
2.4
12
100
0
58
6
13
34
44
1.71
30103--30150
10
4.9
10
76
2
53
66
2
6
25
1.26
30173--30208
15
2.5
14
86
8
54
44
8
0
47
1.33
34402--34438
17
2.2
17
90
0
56
16
18
24
40
1.90
47921--48055
50
2.7
51
87
1
191
25
22
29
22
1.99
49689--49801
43
2.6
42
83
2
127
33
25
15
24
1.95
49701--49803
43
2.4
43
83
6
136
32
27
17
23
1.97
51815--51890
24
3.2
24
88
5
109
22
25
3
48
1.67
51895--52189
33
8.8
32
72
7
158
27
25
16
30
1.96
52011--52255
101
2.4
101
93
0
409
26
24
17
31
1.97
51892--52153
134
2.0
134
93
0
452
27
25
16
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51895--52186
134
2.2
134
89
1
442
27
25
16
30
1.97
58653--58686
11
2.8
12
91
8
52
35
8
11
44
1.72
61673--61726
25
2.2
25
86
0
72
22
20
44
12
1.85
62034--62146
41
2.8
41
89
2
156
27
26
16
29
1.97
62242--62277
18
1.9
18
88
5
54
52
0
0
47
1.00
63931--63981
13
4.0
12
80
12
57
76
0
19
3
0.94
64326--64379
18
2.9
19
75
10
58
44
0
12
42
1.43
67715--67745
13
2.4
13
100
0
62
12
16
48
22
1.80
69632--69661
13
2.2
14
94
5
53
20
0
6
73
1.05
70666--70731
21
3.0
21
77
12
78
59
0
1
39
1.07
71254--71308
27
2.0
28
82
3
67
40
3
1
54
1.28
76312--76351
11
3.6
11
93
0
71
15
35
0
50
1.44
79041--79195
42
3.7
42
77
8
138
45
18
20
15
1.85
79055--79119
21
3.1
21
65
12
53
47
20
20
12
1.81
79067--79131
21
3.1
21
71
2
60
49
18
18
13
1.80
82624--82681
28
2.0
29
83
9
75
41
13
17
27
1.87
88021--88104
29
2.6
34
71
21
90
15
8
22
53
1.68
92212--92270
17
3.5
17
72
22
54
76
6
16
0
1.00
96044--96103
3
20.3
3
82
3
59
1
35
1
61
1.16
96459--96484
12
2.2
12
100
0
52
23
0
0
76
0.78
96512--96578
9
7.2
9
72
21
50
34
1
1
62
1.13
97119--97150
15
2.1
16
88
11
50
31
3
0
65
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100766--101046
140
2.0
140
92
0
463
35
13
20
30
1.91
103357--103389
2
16.5
2
100
0
66
0
48
0
51
1.00
104098--104188
30
3.0
30
98
0
173
40
20
8
29
1.83
106722--106755
17
2.0
17
88
0
50
11
14
5
67
1.39
107717--107744
3
9.3
3
100
0
56
35
0
32
32
1.58
109698--109734
2
18.5
2
94
0
65
48
0
2
48
1.15
110215--110239
2
12.5
2
100
0
50
52
0
0
48
1.00
112353--112415
31
2.0
31
87
0
90
44
9
11
34
1.73
114804--114876
19
3.8
19
72
10
60
28
4
1
65
1.19
120234--120275
22
1.9
22
85
0
57
0
42
0
57
0.99
130035--130079
24
1.9
24
90
4
74
35
0
2
62
1.08
130176--130203
9
3.1
9
100
0
56
57
10
0
32
1.33
130146--130287
68
2.1
66
94
2
248
45
9
4
40
1.58
130276--130317
16
2.6
16
92
0
66
42
7
2
47
1.43
130146--130309
68
2.5
66
86
10
216
45
9
4
40
1.55
132938--132976
20
1.9
21
84
5
53
61
7
0
30
1.24
134173--134205
16
2.1
16
94
0
57
39
6
33
21
1.78
134419--134460
15
2.7
16
82
14
52
52
2
0
45
1.13
134428--134469
15
2.9
15
82
10
52
52
0
0
47
1.00
134635--134682
26
1.9
25
84
16
64
52
2
0
45
1.12
134590--134818
92
2.5
92
83
8
236
47
3
3
44
1.38
149856--149900
23
2.0
22
82
4
54
40
2
17
40
1.62

Tables:   1

The End!