Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4668

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 301

Length: 503
ACGTcount: A:0.51, C:0.13, G:0.14, T:0.21


Found at i:150 original size:3 final size:3

Alignment explanation


    Indices: 144--200  Score: 71
    Period size: 3  Copynumber: 19.0  Consensus size: 3

        134 TAAATAAAAA

                     *                    *                             
        144 AAT AAT AGT AAT AAT AATT AAT AGT AAT AAT AAT AAT AAT AAT AAT
          1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT

             *             
        190 ACT AA- AAT AAT
          1 AAT AAT AAT AAT

        201 TAACTAAATA


Statistics
Matches: 46,  Mismatches: 6, Indels: 4
        0.82            0.11        0.07

Matches are distributed among these distances:
   2    2  0.04
   3   41  0.89
   4    3  0.07

ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33


Consensus pattern (3 bp):   
AAT

Done.