Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1929

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1202
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36


Found at i:1061 original size:38 final size:38

Alignment explanation


    Indices: 1018--1103  Score: 154
    Period size: 38  Copynumber: 2.3  Consensus size: 38

       1008 AGATAATCCT

                       *                          
       1018 GTCATTTATCCTGTTTGTTTGAATAATTTCAACTTCCA
          1 GTCATTTATCCGGTTTGTTTGAATAATTTCAACTTCCA

                                                 *
       1056 GTCATTTATCCGGTTTGTTTGAATAATTTCAACTTCCT
          1 GTCATTTATCCGGTTTGTTTGAATAATTTCAACTTCCA

                      
       1094 GTCATTTATC
          1 GTCATTTATC

       1104 ATTACAAATT


Statistics
Matches: 46,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  38   46  1.00

ACGTcount: A:0.22, C:0.19, G:0.12, T:0.48


Consensus pattern (38 bp):   
GTCATTTATCCGGTTTGTTTGAATAATTTCAACTTCCA
Done.