Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3363

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 456

Length: 760
ACGTcount: A:0.27, C:0.10, G:0.06, T:0.27

Warning! 229 characters in sequence are not A, C, G, or T


Found at i:423 original size:23 final size:23

Alignment explanation


    Indices: 380--424  Score: 56
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        370 TGCTTTTGTA

                          *        
        380 CCCTAAAACCCGAAGCTATTAAT
          1 CCCTAAAACCCGAAACTATTAAT

                 *                 
        403 CCCTATAACCCGTAAAC-ATTAA
          1 CCCTAAAACCCG-AAACTATTAA

        425 AATTAAAGGN


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  23   16  0.84
  24    3  0.16

ACGTcount: A:0.40, C:0.31, G:0.07, T:0.22


Consensus pattern (23 bp):   
CCCTAAAACCCGAAACTATTAAT
Done.