Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1819

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 763

Length: 1273
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34


Found at i:72 original size:19 final size:18

Alignment explanation


    Indices: 31--73  Score: 52
    Period size: 19  Copynumber: 2.3  Consensus size: 18

         21 TCAAATCATG

                          *   
         31 AATATTCAATCAAATTTT
          1 AATATTCAATCAAAATTT

                                
         49 AATATTCAAATCACAAATTT
          1 AATATTC-AATCA-AAATTT

                  
         69 -ATATT
          1 AATATT

         74 TTCTTTTTAT


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  18    7  0.32
  19   10  0.45
  20    5  0.23

ACGTcount: A:0.47, C:0.12, G:0.00, T:0.42


Consensus pattern (18 bp):   
AATATTCAATCAAAATTT

Found at i:207 original size:15 final size:15

Alignment explanation


    Indices: 187--216  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        177 GATCAAATTG

                     *     
        187 ATTAAATGTGTAAAT
          1 ATTAAATGTCTAAAT

                           
        202 ATTAAATGTCTAAAT
          1 ATTAAATGTCTAAAT

        217 TTATTATTAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40


Consensus pattern (15 bp):   
ATTAAATGTCTAAAT
Done.