Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1573

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 922

Length: 1538
ACGTcount: A:0.24, C:0.13, G:0.13, T:0.26

Warning! 370 characters in sequence are not A, C, G, or T


Found at i:796 original size:25 final size:25

Alignment explanation


    Indices: 768--817  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        758 GATTCAAAAG

                                     
        768 AAGAGAATTTTAATGAATTTTTTTC
          1 AAGAGAATTTTAATGAATTTTTTTC

                                     
        793 AAGAGAATTTTAATGAATTTTTTTC
          1 AAGAGAATTTTAATGAATTTTTTTC

        818 TTTAAAAATA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.36, C:0.04, G:0.12, T:0.48


Consensus pattern (25 bp):   
AAGAGAATTTTAATGAATTTTTTTC
Done.