Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold454
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 498277
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.28
Warning! 77531 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:273400 original size:44 final size:46
Alignment explanation
Indices: 273327--273422 Score: 178
Period size: 44 Copynumber: 2.1 Consensus size: 46
273317 TATTAAAAAT
273327 AATATTAGATTTAAATTTCCTATATTTAAATAATAATGGAATAGCG
1 AATATTAGATTTAAATTTCCTATATTTAAATAATAATGGAATAGCG
273373 AATATTAGATTT-AA-TTCCTATATTTAAATAATAATGGAATAGCG
1 AATATTAGATTTAAATTTCCTATATTTAAATAATAATGGAATAGCG
273417 AATATT
1 AATATT
273423 TAAAAAAGAA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
44 36 0.72
45 2 0.04
46 12 0.24
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (46 bp):
AATATTAGATTTAAATTTCCTATATTTAAATAATAATGGAATAGCG
Found at i:274084 original size:13 final size:13
Alignment explanation
Indices: 274066--274090 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
274056 AAAAGAATCC
274066 AAAGAAGAAAAAG
1 AAAGAAGAAAAAG
274079 AAAGAAGAAAAA
1 AAAGAAGAAAAA
274091 TCTGCAATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAGAAGAAAAAG
Found at i:274849 original size:44 final size:43
Alignment explanation
Indices: 274801--275045 Score: 134
Period size: 44 Copynumber: 5.6 Consensus size: 43
274791 CGATGCAGGA
*
274801 AGGCAAGACCTGCTATCTTCAACCTACTCCACTACAATCGAGGG
1 AGGCAAGACCTG-TATCTTCAACCTGCTCCACTACAATCGAGGG
* * * * * * *** *
274845 AGGCAAGGCTTGTGTCTTCGATCTGCTTCACTGTTGAT-GTAGGA
1 AGGCAAGACCTGTATCTTCAACCTGCTCCACT-ACAATCG-AGGG
* * *
274889 AGACAAGATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGG
1 AGGCAAGACCTG-TATCTTCAACCTGCTCCACTACAATCGAGGG
* * * * * * * * * *
274933 AGGCAAGGCTTGTGTCTTCGATCTGCTTCGCTGTCGAT-GTAGGA
1 AGGCAAGACCTGTATCTTCAACCTGCTCCACT-ACAATCG-AGGG
* *
274977 AGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGG
1 AGGCAAGACCTG-TATCTTCAACCTGCTCCACTACAATCGAGGG
** * *
275021 AGATAAGATCTGTAATTTTCAACCT
1 AGGCAAGACCTGT-ATCTTCAACCT
275046 ACTCTACAGC
Statistics
Matches: 140, Mismatches: 52, Indels: 18
0.67 0.25 0.09
Matches are distributed among these distances:
43 33 0.24
44 74 0.53
45 33 0.24
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (43 bp):
AGGCAAGACCTGTATCTTCAACCTGCTCCACTACAATCGAGGG
Found at i:274902 original size:88 final size:88
Alignment explanation
Indices: 274772--275022 Score: 430
Period size: 88 Copynumber: 2.9 Consensus size: 88
274762 GGACCATTGG
* * * *
274772 CTTCGATCTGCTTCACTATCGATGCAGGAAGGCAAGACCTGCTATCTTCAACCTACTCCACTACA
1 CTTCGATCTGCTTCACTGTCGATGTAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
*
274837 ATCGAGGGAGGCAAGGCTTGTGT
66 ACCGAGGGAGGCAAGGCTTGTGT
* *
274860 CTTCGATCTGCTTCACTGTTGATGTAGGAAGACAAGATCTGCTATCTTCAACCTGCTCCACTACA
1 CTTCGATCTGCTTCACTGTCGATGTAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
274925 ACCGAGGGAGGCAAGGCTTGTGT
66 ACCGAGGGAGGCAAGGCTTGTGT
*
274948 CTTCGATCTGCTTCGCTGTCGATGTAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
1 CTTCGATCTGCTTCACTGTCGATGTAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
275013 ACCGAGGGAG
66 ACCGAGGGAG
275023 ATAAGATCTG
Statistics
Matches: 153, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 153 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (88 bp):
CTTCGATCTGCTTCACTGTCGATGTAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
ACCGAGGGAGGCAAGGCTTGTGT
Found at i:275065 original size:44 final size:43
Alignment explanation
Indices: 275017--275242 Score: 109
Period size: 44 Copynumber: 5.1 Consensus size: 43
275007 ACTACAACCG
*
275017 AGGGAGATAAGATCTGT-AATTTTCAACCTACTCTACAGCTGGTC
1 AGGGAGATAAGA-CT-TAAATCTTCAACCTACTCTACAGCTGGTC
* * * * *
275061 AGGGAGCTAGGACTTACAATCTTCTACCTATTCTACTGCTGGTC
1 AGGGAGATAAGACTTA-AATCTTCAACCTACTCTACAGCTGGTC
* * ** * * * *
275105 AGGGAGCTAGGACTTACAGCCTTCCACATATTCCACTA-CTGGTC
1 AGGGAGATAAGACTTA-AATCTTCAACCTACTCTAC-AGCTGGTC
* * * * * *
275149 TA-GGAGCTAGGACTTACAATCTTCTACCTATTCCACTGCTGGTC
1 -AGGGAGATAAGACTTA-AATCTTCAACCTACTCTACAGCTGGTC
* * * * * *
275193 AGGGAGCTAGGACTTACAGTCTTCCAA-CTATTCCACTGCTGGTC
1 AGGGAGATAAGACTTA-AATCTT-CAACCTACTCTACAGCTGGTC
275237 AGGGAG
1 AGGGAG
275243 CTAGGATATA
Statistics
Matches: 156, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 149 0.96
45 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (43 bp):
AGGGAGATAAGACTTAAATCTTCAACCTACTCTACAGCTGGTC
Found at i:275243 original size:44 final size:44
Alignment explanation
Indices: 275054--275381 Score: 437
Period size: 44 Copynumber: 7.5 Consensus size: 44
275044 CTACTCTACA
*
275054 GCTGGTCAGGGAGCTAGGACTTACAATCTTCTACCTATTCTACT
1 GCTGGTCAGGGAGCTAGGACTTACAATCTTCTACCTATTCCACT
** * *
275098 GCTGGTCAGGGAGCTAGGACTTACAGCCTTCCACATATTCCACT
1 GCTGGTCAGGGAGCTAGGACTTACAATCTTCTACCTATTCCACT
*
275142 ACTGGTCTA-GGAGCTAGGACTTACAATCTTCTACCTATTCCACT
1 GCTGGTC-AGGGAGCTAGGACTTACAATCTTCTACCTATTCCACT
* * *
275186 GCTGGTCAGGGAGCTAGGACTTACAGTCTTCCAACTATTCCACT
1 GCTGGTCAGGGAGCTAGGACTTACAATCTTCTACCTATTCCACT
* *
275230 GCTGGTCAGGGAGCTAGGA-TATACAATCTT-TCGCCTATTCCAAT
1 GCTGGTCAGGGAGCTAGGACT-TACAATCTTCT-ACCTATTCCACT
* * * *
275274 GCTGTTCAGGGAGCTAGGTCTTTCAGTCTTCTACCTATTCCACT
1 GCTGGTCAGGGAGCTAGGACTTACAATCTTCTACCTATTCCACT
* *
275318 GTTGGTCAGGGAGCTAGGACTCACAATCTTCTACCTATTCCACT
1 GCTGGTCAGGGAGCTAGGACTTACAATCTTCTACCTATTCCACT
* *
275362 GCTGTTCAGGGAGATAGGAC
1 GCTGGTCAGGGAGCTAGGAC
275382 ATATAGTTTC
Statistics
Matches: 244, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
43 2 0.01
44 239 0.98
45 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.30
Consensus pattern (44 bp):
GCTGGTCAGGGAGCTAGGACTTACAATCTTCTACCTATTCCACT
Found at i:276676 original size:15 final size:17
Alignment explanation
Indices: 276652--276685 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
276642 GGCCTCTCCA
276652 TTTTACTTTTT-ATTTT
1 TTTTACTTTTTCATTTT
276668 TTTTA-TTTTTCATTTT
1 TTTTACTTTTTCATTTT
276684 TT
1 TT
276686 GGACTCAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTACTTTTTCATTTT
Found at i:276741 original size:48 final size:51
Alignment explanation
Indices: 276680--276784 Score: 128
Period size: 48 Copynumber: 2.1 Consensus size: 51
276670 TTATTTTTCA
* * * *
276680 TTTTTT-GGACTCAAAGTGCCCTTTAAGGGTTTTTACTTTGAT-CTTT-T-
1 TTTTTTCGAACTCAAAGCGCCCTTTAAGGGTTTTCACCTTGATCCTTTCTC
**
276727 TTTTTTCGAACTCAAAGCGCCCTTTGTGGGTTTTCACCTTGATCCTTTCTC
1 TTTTTTCGAACTCAAAGCGCCCTTTAAGGGTTTTCACCTTGATCCTTTCTC
276778 TTTTTTC
1 TTTTTTC
276785 AGGTGAAGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 6 0.12
48 30 0.62
49 4 0.08
50 1 0.02
51 7 0.15
ACGTcount: A:0.14, C:0.21, G:0.15, T:0.50
Consensus pattern (51 bp):
TTTTTTCGAACTCAAAGCGCCCTTTAAGGGTTTTCACCTTGATCCTTTCTC
Found at i:277900 original size:100 final size:99
Alignment explanation
Indices: 277724--277904 Score: 258
Period size: 100 Copynumber: 1.8 Consensus size: 99
277714 AGTAATAATT
* * *
277724 GCAAATATGTATTTTATTAAAATAATAACGTTCAGACATGAGCCTATTTCAAAAAGGAATTTCTA
1 GCAAAGATGTATTTCATTAAAATAACAACGTTCAGACATGAGCCTATTTCAAAAAGGAATTTCTA
*
277789 TCATTTTTAGGCTAAACATTTGCTCAAAAATGATC
66 TCA-TTCTAGGCTAAACATTTGCTCAAAAATGATC
* *
277824 GCAAAGATGTATTTCATTAAAATAACAACGTTCAGACATGAGCCTATTTCACAAA-GAAGTTTTT
1 GCAAAGATGTATTTCATTAAAATAACAACGTTCAGACATGAGCCTATTTCAAAAAGGAA-TTTCT
277888 ACTGC-TTCTAGGCTAAA
65 A-T-CATTCTAGGCTAAA
277905 AGCAACAAGT
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
99 3 0.04
100 67 0.93
101 1 0.01
102 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (99 bp):
GCAAAGATGTATTTCATTAAAATAACAACGTTCAGACATGAGCCTATTTCAAAAAGGAATTTCTA
TCATTCTAGGCTAAACATTTGCTCAAAAATGATC
Found at i:281507 original size:24 final size:25
Alignment explanation
Indices: 281478--281546 Score: 83
Period size: 24 Copynumber: 2.8 Consensus size: 25
281468 CAAATAATAA
281478 AATAATAATACAACATAACTTTTA-
1 AATAATAATACAACATAACTTTTAG
*
281502 AGTAATAATACATA-ATAA-TTTTAG
1 AATAATAATACA-ACATAACTTTTAG
281526 AATAATAATAC-ACGATAACTT
1 AATAATAATACAAC-ATAACTT
281547 CAAAAATATG
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
22 1 0.03
23 5 0.13
24 29 0.76
25 3 0.08
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.33
Consensus pattern (25 bp):
AATAATAATACAACATAACTTTTAG
Found at i:282417 original size:13 final size:13
Alignment explanation
Indices: 282399--282423 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
282389 AAAAGAATCC
282399 AAAGAAGAAAAAG
1 AAAGAAGAAAAAG
282412 AAAGAAGAAAAA
1 AAAGAAGAAAAA
282424 TCTGCAATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAGAAGAAAAAG
Found at i:285183 original size:125 final size:124
Alignment explanation
Indices: 284941--285310 Score: 508
Period size: 125 Copynumber: 3.0 Consensus size: 124
284931 CATGTTACTG
* * *
284941 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCAACTTGGTAGAAG
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCA-AAAGCATCCTGGTAGAAG
* *
285006 TGATTTTATACTATTTTCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCAACTA
65 CGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCAACTA
* * * * * * *
285066 TAGTAAAAACGCGTCCACGAGGGCGCGATTTTAGAAATTCTTCTCAAATAGCATCCTGCTTGAAG
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCAAA-AGCATCCTGGTAGAAG
* * * * ** *
285131 CGTTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATAATTT-TTTCAGGACGTACTG
65 CG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCAACTA
* *
285191 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCTTAAAGCATCCTGGTAAAAG
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTC-AAAAGCATCCTGGTAGAAG
285256 CGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACC
65 CGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACC
285311 TAAAAACCTT
Statistics
Matches: 209, Mismatches: 32, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
124 41 0.20
125 128 0.61
126 40 0.19
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (124 bp):
TAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCAAAAGCATCCTGGTAGAAGC
GATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCAACTA
Found at i:289981 original size:44 final size:44
Alignment explanation
Indices: 289926--290510 Score: 284
Period size: 44 Copynumber: 13.3 Consensus size: 44
289916 CTGTAACCTC
* **
289926 AGGGAGGTAAGATCTGCCATCTTTGATCTACTCCACTACTGTCT
1 AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACTACTGTCT
* ** * * * *
289970 GGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACTACTGTCT
* * * * *
290014 AGGGAGAT-AGAAT-TACTAGCTTCAATGTACTCCACTGTAAC-CTC-
1 AGGGAGATAAG-ATCTGCCATCTTCAATCTACTCCAC--T-ACTGTCT
* ** *
290058 AGGGAGGTAAGATCTGCCATCTTTGATATACTCCACTACTGTCT
1 AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACTACTGTCT
** * * * *
290102 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACTACTGTCT
* * * * *
290146 AGGGAGAT-AGAAT-TACTAGCTTCAATGTACTCCACTGTAAC-CTC-
1 AGGGAGATAAG-ATCTGCCATCTTCAATCTACTCCAC--T-ACTGTCT
* * *
290190 AGGGAGGTAAAATCTGCCA-CATTCGATCTACTCCACTACTGTCT
1 AGGGAGATAAGATCTGCCATC-TTCAATCTACTCCACTACTGTCT
** * * * * *
290234 AGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACTACTGTCT
* ** * * * ***
290278 AGGGAGAT-AGAAT-TACCGGCTTCAATATACTCCGCTGCAACCT
1 AGGGAGATAAG-ATCTGCCATCTTCAATCTACTCCACTACTGTCT
* * * * * *
290321 CAGGGAGGTAAAATCTGTCATCTTCGATCTGCTCCACTACTGTTT
1 -AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACTACTGTCT
* ** * * * * *
290366 AGGAAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACTACTGTCT
* ** *
290410 AGGGAGAT-AGAAT-TACCGGCTTCAATGTACTCCACTGTAACT-TC-
1 AGGGAGATAAG-ATCTGCCATCTTCAATCTACTCCAC--T-ACTGTCT
* * *
290454 AGGGAGGTAAAATCTGCCATCCTT-GATCTACTCCACTACTGTCT
1 AGGGAGATAAGATCTGCCAT-CTTCAATCTACTCCACTACTGTCT
290498 AGGGAGATAAGAT
1 AGGGAGATAAGAT
290511 TTGTTTTCTT
Statistics
Matches: 387, Mismatches: 123, Indels: 62
0.68 0.22 0.11
Matches are distributed among these distances:
42 7 0.02
43 81 0.21
44 219 0.57
45 73 0.19
46 7 0.02
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACTACTGTCT
Found at i:290047 original size:132 final size:132
Alignment explanation
Indices: 289882--290510 Score: 1035
Period size: 132 Copynumber: 4.8 Consensus size: 132
289872 CACGCCAACT
* * *
289882 AGGGAGATAGGATTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAGATCTGCCATC
1 AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATC
* *
289947 TTTGATCTACTCCACTACTGTCTGGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGC
66 TTTGATCTACTCCACTACTGTCTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGC
290012 CC
131 CC
* *
290014 AGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAGATCTGCCATC
1 AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATC
* *
290079 TTTGATATACTCCACTACTGTCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGC
66 TTTGATCTACTCCACTACTGTCTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGC
290144 CC
131 CC
*
290146 AGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCA-C
1 AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATC
*
290210 ATTCGATCTACTCCACTACTGTCTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTG
66 -TTTGATCTACTCCACTACTGTCTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTG
290275 CCC
130 CCC
* * * * *
290278 AGGGAGATAGAATTACCGGCTTCAATATACTCCGCTGCAACCTCAGGGAGGTAAAATCTGTCATC
1 AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATC
* * * *
290343 TTCGATCTGCTCCACTACTGTTTAGGAAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGC
66 TTTGATCTACTCCACTACTGTCTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGC
290408 CC
131 CC
* *
290410 AGGGAGATAGAATTACCGGCTTCAATGTACTCCACTGTAACTTCAGGGAGGTAAAATCTGCCATC
1 AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATC
*
290475 CTTGATCTACTCCACTACTGTCTAGGGAGATAAGAT
66 TTTGATCTACTCCACTACTGTCTAGGGAGATAAGAT
290511 TTGTTTTCTT
Statistics
Matches: 467, Mismatches: 28, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
131 1 0.00
132 465 1.00
133 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (132 bp):
AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATC
TTTGATCTACTCCACTACTGTCTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGC
CC
Found at i:294975 original size:13 final size:13
Alignment explanation
Indices: 294957--294981 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
294947 AAATTGTCGA
294957 GGATAACAAAGAT
1 GGATAACAAAGAT
294970 GGATAACAAAGA
1 GGATAACAAAGA
294982 AATTGATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.24, T:0.12
Consensus pattern (13 bp):
GGATAACAAAGAT
Found at i:295373 original size:20 final size:21
Alignment explanation
Indices: 295350--295397 Score: 73
Period size: 20 Copynumber: 2.3 Consensus size: 21
295340 TTAGCCTCTC
295350 CATTTTT-ACTTTTCAT-TTTT
1 CATTTTTCA-TTTTCATCTTTT
295370 CATTTTTCATTTTCATCTTTT
1 CATTTTTCATTTTCATCTTTT
295391 CATTTTT
1 CATTTTT
295398 TCNNNNNNNN
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.69
Consensus pattern (21 bp):
CATTTTTCATTTTCATCTTTT
Found at i:295376 original size:14 final size:14
Alignment explanation
Indices: 295350--295397 Score: 64
Period size: 13 Copynumber: 3.5 Consensus size: 14
295340 TTAGCCTCTC
*
295350 CATTTTT-ACTTTT
1 CATTTTTCATTTTT
295363 CATTTTTCATTTTT
1 CATTTTTCATTTTT
295377 CA-TTTTCATCTTTT
1 CATTTTTCAT-TTTT
295391 CATTTTT
1 CATTTTT
295398 TCNNNNNNNN
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 14 0.45
14 13 0.42
15 4 0.13
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.69
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:295399 original size:8 final size:7
Alignment explanation
Indices: 295350--295397 Score: 64
Period size: 7 Copynumber: 7.0 Consensus size: 7
295340 TTAGCCTCTC
295350 CATTTTT
1 CATTTTT
*
295357 -ACTTTT
1 CATTTTT
295363 CATTTTT
1 CATTTTT
295370 CATTTTT
1 CATTTTT
295377 CA-TTTT
1 CATTTTT
295383 CATCTTTT
1 CAT-TTTT
295391 CATTTTT
1 CATTTTT
295398 TCNNNNNNNN
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
6 11 0.31
7 18 0.50
8 7 0.19
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:296341 original size:14 final size:14
Alignment explanation
Indices: 296324--296352 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
296314 GAAAAAATCC
296324 AAAAGAATGAAAGA
1 AAAAGAATGAAAGA
296338 AAAAGAATGAAAGA
1 AAAAGAATGAAAGA
296352 A
1 A
296353 TATTTGCTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.07
Consensus pattern (14 bp):
AAAAGAATGAAAGA
Found at i:297279 original size:349 final size:348
Alignment explanation
Indices: 296636--297330 Score: 1345
Period size: 349 Copynumber: 2.0 Consensus size: 348
296626 CATGATTGGG
296636 AAACGGATTTTTTTGCACTAGATGAGTCATCAAGCTTAACAACACCCATGTTGATGAGTTTTTCA
1 AAACGGATTTTTTTGCACTAGATGAGTCATCAAGCTTAACAACACCCATGTTGATGAGTTTTTCA
296701 ACTAGCTTTTTGAAGGTAATGCAATTCTCGATAGAGTGCCCCGTAATTCTTGCATGGTAGTCACA
66 ACTAGCTTTTTGAAGGTAATGCAATTCTCGATAGAGTGCCCCGTAATTCTTGCATGGTAGTCACA
296766 TTGTGCGTTCGCATCATACCACTTGGGATACAGAGGTTGTGGGGGTTTTAAGTAGGAAGGGGAAA
131 TTGTGCGTTCGCATCATACCACTTGGGATACAGAGGTTGTGGGGGTTTTAAGTAGGAAGGGGAAA
296831 CAACGTGTGCATCGAATAAGCTTTGGTACAGCTCCTTATACGACATCGAAATTGGCGTGAACTGG
196 CAACGTGTGCATCGAATAAGCTTTGGTACAGCTCCTTATACGACATCGAAATTGGCGTGAACTGG
*
296896 AGCTTCTCAATACCTGGTTTCACTCCATATTCCTGTCTCATTGAACTTTGTTGACTAGCAACCCC
261 AGCTTCTCAATACCTGGTTTCACTCCAGATTCCTGTCTCATTGAACTTTGTTGACTAGCAACCCC
296961 CTTTCCTGGATGACTTACAGCACC
326 CTTTCCT-GATGACTTACAGCACC
296985 AAACGGATTTTTTTGCACTAGATGAGTCATCAAGCTTAACAACACCCATGTTGATGAGTTTTTCA
1 AAACGGATTTTTTTGCACTAGATGAGTCATCAAGCTTAACAACACCCATGTTGATGAGTTTTTCA
*
297050 ACTAGCTTTTTGAAGGTAATGCAATTCTCGATTGAGTGCCCCGTAATTCTTGCATGGTAGTCACA
66 ACTAGCTTTTTGAAGGTAATGCAATTCTCGATAGAGTGCCCCGTAATTCTTGCATGGTAGTCACA
*
297115 TTGTGCGTTCGCATCATACCACTTGGGATACGGAGGTTGTGGGGGTTTTAAGTAGGAAGGGGAAA
131 TTGTGCGTTCGCATCATACCACTTGGGATACAGAGGTTGTGGGGGTTTTAAGTAGGAAGGGGAAA
297180 CAACGTGTGCATCGAATAAGCTTTGGTACAGCTCCTTATACGACATCGAAATTGGCGTGAACTGG
196 CAACGTGTGCATCGAATAAGCTTTGGTACAGCTCCTTATACGACATCGAAATTGGCGTGAACTGG
*
297245 AGCTTCTCAGTACCTGGTTTCACTCCAGATTCCTGTCTCATTGAACTTTGTTGACTAGCAACCCC
261 AGCTTCTCAATACCTGGTTTCACTCCAGATTCCTGTCTCATTGAACTTTGTTGACTAGCAACCCC
297310 CTTTCCTGATGACTTACAGCA
326 CTTTCCTGATGACTTACAGCA
297331 ATTGATTTAG
Statistics
Matches: 342, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
348 14 0.04
349 328 0.96
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.31
Consensus pattern (348 bp):
AAACGGATTTTTTTGCACTAGATGAGTCATCAAGCTTAACAACACCCATGTTGATGAGTTTTTCA
ACTAGCTTTTTGAAGGTAATGCAATTCTCGATAGAGTGCCCCGTAATTCTTGCATGGTAGTCACA
TTGTGCGTTCGCATCATACCACTTGGGATACAGAGGTTGTGGGGGTTTTAAGTAGGAAGGGGAAA
CAACGTGTGCATCGAATAAGCTTTGGTACAGCTCCTTATACGACATCGAAATTGGCGTGAACTGG
AGCTTCTCAATACCTGGTTTCACTCCAGATTCCTGTCTCATTGAACTTTGTTGACTAGCAACCCC
CTTTCCTGATGACTTACAGCACC
Found at i:298659 original size:13 final size:13
Alignment explanation
Indices: 298641--298666 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
298631 GTTCAATTTT
298641 TTTACTAGAAAAC
1 TTTACTAGAAAAC
298654 TTTACTAGAAAAC
1 TTTACTAGAAAAC
298667 AAATCTCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
TTTACTAGAAAAC
Found at i:308310 original size:2 final size:2
Alignment explanation
Indices: 308303--308333 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
308293 GCACTAAAGT
*
308303 AG AG AG AG AG AG AG AG AG AG AG AG AA AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
308334 TTGGATTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (2 bp):
AG
Found at i:308385 original size:171 final size:173
Alignment explanation
Indices: 308092--308440 Score: 576
Period size: 171 Copynumber: 2.0 Consensus size: 173
308082 GAGCTTATAA
*
308092 GAGCATAAACTATACCACATCAATATGCACTAAAGTAGAGAGAGAGGGAGAGAGAGAGAAAGAGA
1 GAGCATAAACTACACCACATCAATATGCACTAAAGTAGAGAGAGA-GGAGAGAGAGAG-AAGAGA
* *
308157 CAGAGATTGGAATCATGAATGTAAAGTTGTTTTTAAGCTTGATTTATAAAAGAATCATGCTAGGA
64 AAGAGATTGGAATCATGAATGTAAAATTGTTTTTAAGCTTGATTTATAAAAGAATCATGCTAGGA
*
308222 AAATACTGGGATTAGTAGTAAGTGAGGCTTTATTTAGGGCTATTT
129 AAATACTGGGATTAATAGTAAGTGAGGCTTTATTTAGGGCTATTT
308267 GAGCATAAACTACACCACATCAATATGCACTAAAGTAGAGAGAGA-GAGAGAGAGAG-AGAGAAA
1 GAGCATAAACTACACCACATCAATATGCACTAAAGTAGAGAGAGAGGAGAGAGAGAGAAGAGAAA
* * * * *
308330 GAGATTGGATTCATGAATGTAAAATTGTTTTTAAGCTTGATTTATGAAGGAATCATGTTGGGAAA
66 GAGATTGGAATCATGAATGTAAAATTGTTTTTAAGCTTGATTTATAAAAGAATCATGCTAGGAAA
*
308395 ATACTGGGTTTAATAGTAAGTGAGGCTTTATTTAGGGCTATTT
131 ATACTGGGATTAATAGTAAGTGAGGCTTTATTTAGGGCTATTT
308438 GAG
1 GAG
308441 TAACCATTGG
Statistics
Matches: 164, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
171 109 0.66
173 11 0.07
175 44 0.27
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.28
Consensus pattern (173 bp):
GAGCATAAACTACACCACATCAATATGCACTAAAGTAGAGAGAGAGGAGAGAGAGAGAAGAGAAA
GAGATTGGAATCATGAATGTAAAATTGTTTTTAAGCTTGATTTATAAAAGAATCATGCTAGGAAA
ATACTGGGATTAATAGTAAGTGAGGCTTTATTTAGGGCTATTT
Found at i:325401 original size:13 final size:13
Alignment explanation
Indices: 325383--325407 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
325373 ACTATTTCTA
325383 AATAAGTATTTTT
1 AATAAGTATTTTT
325396 AATAAGTATTTT
1 AATAAGTATTTT
325408 ATTAGTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (13 bp):
AATAAGTATTTTT
Found at i:337563 original size:6 final size:6
Alignment explanation
Indices: 337537--337578 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
337527 GTAGTTCCGT
* * *
337537 CTCTGC CTCCGG CTCTAG CTCTGG CTCTGG CTCTGG CTCTGG
1 CTCTGG CTCTGG CTCTGG CTCTGG CTCTGG CTCTGG CTCTGG
337579 TGCATGATAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.02, C:0.38, G:0.29, T:0.31
Consensus pattern (6 bp):
CTCTGG
Found at i:339737 original size:19 final size:19
Alignment explanation
Indices: 339681--339738 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 19
339671 ATATATATTT
339681 AAATA-TTTTTAATA-AAA
1 AAATATTTTTTAATATAAA
* * *
339698 AATTATATTTT-ATTTAAA
1 AAATATTTTTTAATATAAA
339716 AAATATTTTTTAATATAAA
1 AAATATTTTTTAATATAAA
339735 AAAT
1 AAAT
339739 TAATTCGCGC
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
17 6 0.19
18 16 0.50
19 10 0.31
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AAATATTTTTTAATATAAA
Found at i:342456 original size:14 final size:13
Alignment explanation
Indices: 342434--342469 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
342424 TAAATTTAGC
342434 TTAAATTTTTTCAA
1 TTAAATTTTTT-AA
*
342448 TTTAATTTTTTAA
1 TTAAATTTTTTAA
342461 TTAAATTTT
1 TTAAATTTT
342470 AATTTTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (13 bp):
TTAAATTTTTTAA
Found at i:343069 original size:2 final size:2
Alignment explanation
Indices: 343062--343096 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
343052 TTATGTTTTC
343062 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
343097 ATGATTATGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:345815 original size:26 final size:26
Alignment explanation
Indices: 345766--345816 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
345756 ACAATTAATC
**
345766 ATAATTTTTATGTCATGTTATTTTTT
1 ATAATTTTTATGTCATAATATTTTTT
345792 ATAATTTTTATGCTCATAAT-TTTTT
1 ATAATTTTTATG-TCATAATATTTTT
345817 ATTCACAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.63
Consensus pattern (26 bp):
ATAATTTTTATGTCATAATATTTTTT
Found at i:346580 original size:23 final size:23
Alignment explanation
Indices: 346533--346580 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
346523 AAAATTTATT
* **
346533 TATTTATTCAATCAGTTTTTTAA
1 TATTTATTCAATAAGTTTTAAAA
*
346556 TATTTATTTAATAAGTTTTAAAA
1 TATTTATTCAATAAGTTTTAAAA
346579 TA
1 TA
346581 ATTCAAGTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (23 bp):
TATTTATTCAATAAGTTTTAAAA
Found at i:350889 original size:42 final size:42
Alignment explanation
Indices: 350819--350958 Score: 133
Period size: 42 Copynumber: 3.3 Consensus size: 42
350809 GCCCGAAGGC
* * *
350819 TGAACAAAAGCAC-ATAAGCGCTAAACAGAAACCCATAAGGGT
1 TGAACAAAAGCTCAAT-AGAGCTGAACAGAAACCCATAAGGGT
** * * *
350861 TGAACGGAAGCTTATTAGAGCTGAACAGAAACCTATAAGGGT
1 TGAACAAAAGCTCAATAGAGCTGAACAGAAACCCATAAGGGT
* **
350903 TAAACAAAAGCTCAATAGAGCTGAATGGAAACCCATTAA-GGT
1 TGAACAAAAGCTCAATAGAGCTGAACAGAAACCCA-TAAGGGT
350945 TGAACAGAAA-CTCA
1 TGAACA-AAAGCTCA
350959 TATGAGTTAA
Statistics
Matches: 78, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
42 71 0.91
43 7 0.09
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.17
Consensus pattern (42 bp):
TGAACAAAAGCTCAATAGAGCTGAACAGAAACCCATAAGGGT
Found at i:353217 original size:14 final size:14
Alignment explanation
Indices: 353198--353225 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
353188 GAGGCTGAAT
353198 ATGACAGAGATTAA
1 ATGACAGAGATTAA
353212 ATGACAGAGATTAA
1 ATGACAGAGATTAA
353226 GTATAGCCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.21, T:0.21
Consensus pattern (14 bp):
ATGACAGAGATTAA
Found at i:359093 original size:24 final size:25
Alignment explanation
Indices: 359060--359109 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
359050 TGTAAATCAG
359060 AAAAATATCTC-TAGA-AATTTTCT
1 AAAAATATCTCTTAGATAATTTTCT
359083 AAAAATAATCTCTTTAGATAATTTTCT
1 AAAAAT-ATCTC-TTAGATAATTTTCT
359110 CTCTACAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 6 0.26
24 5 0.22
26 4 0.17
27 8 0.35
ACGTcount: A:0.42, C:0.12, G:0.04, T:0.42
Consensus pattern (25 bp):
AAAAATATCTCTTAGATAATTTTCT
Found at i:361222 original size:28 final size:28
Alignment explanation
Indices: 361183--361340 Score: 167
Period size: 28 Copynumber: 5.7 Consensus size: 28
361173 GTGTCCACTG
* * *
361183 TTTTCAAATTTTATAGTTTTGCCCCTAT
1 TTTTCAGATTTTACAGTTTTACCCCTAT
* *
361211 TTTTCAGATTTTATAGTTTTACCTCTAT
1 TTTTCAGATTTTACAGTTTTACCCCTAT
*
361239 TTTTGAGATTTTACAGTTTTACCCCTAAT
1 TTTTCAGATTTTACAGTTTTACCCCT-AT
* * *
361268 TTTT-AGATTTTCCAGTTTTGCCTCTAT
1 TTTTCAGATTTTACAGTTTTACCCCTAT
* *
361295 TTTTCAGATTTTACAGTTTT-CCCTTGT
1 TTTTCAGATTTTACAGTTTTACCCCTAT
* * *
361322 TATTCATATTTTATAGTTT
1 TTTTCAGATTTTACAGTTT
361341 GGACCTAGAA
Statistics
Matches: 112, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
27 26 0.23
28 80 0.71
29 6 0.05
ACGTcount: A:0.20, C:0.16, G:0.09, T:0.55
Consensus pattern (28 bp):
TTTTCAGATTTTACAGTTTTACCCCTAT
Found at i:361258 original size:56 final size:55
Alignment explanation
Indices: 361183--361340 Score: 192
Period size: 56 Copynumber: 2.8 Consensus size: 55
361173 GTGTCCACTG
* *
361183 TTTTCAAATTTTATAGTTTTGCCCCTATTTTTCAGATTTTATAGTTTTACCTCTAT
1 TTTTCAGATTTTACAGTTTT-CCCCTATTTTTCAGATTTTATAGTTTTACCTCTAT
* ** *
361239 TTTTGAGATTTTACAGTTTTACCCCTAATTTTT-AGATTTTCCAGTTTTGCCTCTAT
1 TTTTCAGATTTTACAGTTTT-CCCCT-ATTTTTCAGATTTTATAGTTTTACCTCTAT
* * * *
361295 TTTTCAGATTTTACAGTTTTCCCTTGTTATTCATATTTTATAGTTT
1 TTTTCAGATTTTACAGTTTTCCCCTATTTTTCAGATTTTATAGTTT
361341 GGACCTAGAA
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
54 4 0.05
55 15 0.17
56 61 0.71
57 6 0.07
ACGTcount: A:0.20, C:0.16, G:0.09, T:0.55
Consensus pattern (55 bp):
TTTTCAGATTTTACAGTTTTCCCCTATTTTTCAGATTTTATAGTTTTACCTCTAT
Found at i:361353 original size:84 final size:84
Alignment explanation
Indices: 361197--361354 Score: 192
Period size: 84 Copynumber: 1.9 Consensus size: 84
361187 CAAATTTTAT
* * * *
361197 AGTTTTGCCCCTATTTTTCAGATTTTATAGTTTTACCTCTATTTTTGAGATTTTACAGTTTTACC
1 AGTTTTGCCCCTATTTTTCAGATTTTACAGTTTTACCTCTATTATTCAGATTTTACAGTTTGACC
**
361262 CCTAATTTTTAGATTTTCC
66 CAGAATTTTTAGATTTTCC
* * * * *
361281 AGTTTTGCCTCTATTTTTCAGATTTTACAGTTTTCCCT-TGTTATTCATATTTTATAGTTTGGAC
1 AGTTTTGCCCCTATTTTTCAGATTTTACAGTTTTACCTCTATTATTCAGATTTTACAGTTT-GAC
*
361345 CTAGAATTTT
65 CCAGAATTTT
361355 ATGTTGTGAC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
83 17 0.28
84 44 0.72
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.53
Consensus pattern (84 bp):
AGTTTTGCCCCTATTTTTCAGATTTTACAGTTTTACCTCTATTATTCAGATTTTACAGTTTGACC
CAGAATTTTTAGATTTTCC
Found at i:361732 original size:69 final size:69
Alignment explanation
Indices: 361650--361787 Score: 258
Period size: 69 Copynumber: 2.0 Consensus size: 69
361640 TACATGTTAT
*
361650 CAACATAATGAAACAGATAATATGTTAGTGTTAATATTGACACTACCCTATTGAAATACCTGTTA
1 CAACATAATGAAACAGATAATATGTTAGTGTTAATATTGACACTACCCTATTGAAATACATGTTA
361715 AAGC
66 AAGC
*
361719 CAACATAATGAAACATATAATATGTTAGTGTTAATATTGACACTACCCTATTGAAATACATGTTA
1 CAACATAATGAAACAGATAATATGTTAGTGTTAATATTGACACTACCCTATTGAAATACATGTTA
361784 AAGC
66 AAGC
361788 ATGTTAAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.31
Consensus pattern (69 bp):
CAACATAATGAAACAGATAATATGTTAGTGTTAATATTGACACTACCCTATTGAAATACATGTTA
AAGC
Found at i:365301 original size:2 final size:2
Alignment explanation
Indices: 365294--365318 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
365284 TGAGATACTA
365294 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
365319 GACTAAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:370593 original size:2 final size:2
Alignment explanation
Indices: 370586--370621 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
370576 TTTTATCATG
370586 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
370622 TATATATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:371169 original size:12 final size:13
Alignment explanation
Indices: 371145--371173 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
371135 GTCCTCAATA
371145 TATTTAGTTTATT
1 TATTTAGTTTATT
371158 TATTTA-TTTATT
1 TATTTAGTTTATT
371170 TATT
1 TATT
371174 AAAAATAGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.72
Consensus pattern (13 bp):
TATTTAGTTTATT
Found at i:379420 original size:27 final size:27
Alignment explanation
Indices: 379390--379441 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
379380 TGATTCTTTC
*
379390 ATTCTTTTCGATTTTCTTCCAAATTTT
1 ATTCTTTTAGATTTTCTTCCAAATTTT
379417 ATTCTTTTAGATTTTCTTCCAAATT
1 ATTCTTTTAGATTTTCTTCCAAATT
379442 AATCTTGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.04, T:0.58
Consensus pattern (27 bp):
ATTCTTTTAGATTTTCTTCCAAATTTT
Found at i:380200 original size:8 final size:8
Alignment explanation
Indices: 380187--380241 Score: 51
Period size: 8 Copynumber: 7.0 Consensus size: 8
380177 GTTCAAACTC
380187 AAAAAAAT
1 AAAAAAAT
380195 AAAAAAAT
1 AAAAAAAT
*
380203 -CAAAAAT
1 AAAAAAAT
380210 CAAAAAAAT
1 -AAAAAAAT
*
380219 TAAAAAA-
1 AAAAAAAT
**
380226 CCAAAAAT
1 AAAAAAAT
380234 AAAAAAAT
1 AAAAAAAT
380242 CAAAGAAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
7 11 0.30
8 20 0.54
9 6 0.16
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAAAAT
Found at i:380213 original size:24 final size:24
Alignment explanation
Indices: 380185--380250 Score: 89
Period size: 24 Copynumber: 2.7 Consensus size: 24
380175 GAGTTCAAAC
*
380185 TCAAAAAAATAAAAAAATCAAAAA
1 TCAAAAAAATAAAAAAACCAAAAA
*
380209 TCAAAAAAATTAAAAAACCAAAAA
1 TCAAAAAAATAAAAAAACCAAAAA
380233 T-AAAAAAATCAAAGAAAA
1 TCAAAAAAAT-AAA-AAAA
380251 ATAGGAGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
23 8 0.22
24 25 0.68
25 4 0.11
ACGTcount: A:0.77, C:0.09, G:0.02, T:0.12
Consensus pattern (24 bp):
TCAAAAAAATAAAAAAACCAAAAA
Found at i:383351 original size:44 final size:43
Alignment explanation
Indices: 383284--383406 Score: 140
Period size: 44 Copynumber: 2.8 Consensus size: 43
383274 TGAATATTTC
* *
383284 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGACGCCA
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGACGACA
* * *
383327 GAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAGGACA
1 -AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGACGACA
* * * *
383371 ATATCCTATCTCCCTGA-AGTTATAGTGGAGCGGATT
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATT
383407 AAAATAAAGG
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
42 1 0.01
43 28 0.42
44 38 0.57
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (43 bp):
AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGACGACA
Found at i:383401 original size:43 final size:44
Alignment explanation
Indices: 383284--383488 Score: 136
Period size: 44 Copynumber: 4.8 Consensus size: 44
383274 TGAATATTTC
* * * *
383284 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGACGCCAG
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGACGACAG
* * *
383328 AGATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCGAGGACA-
1 AGATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGACGACAG
* * * * ** * *
383371 ATATCCTATCTCCCTGAAGTTATAGTGGAGCGGAT-TAAAATAA
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGACGACAG
* ** * *
383414 AGGATCCTATCTCTCTGAAGTTACAGCAGAGCAGGTC-AC-ATA-
1 A-GATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGACGACAG
* *
383456 A-AGCCTTATCTCCCTGAAGTTACAGTGGGGCAG
1 AGATCC-TATCTCCCTGAAGTTACAGTGGAGCAG
383489 GTTGAATATG
Statistics
Matches: 128, Mismatches: 27, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
40 3 0.02
41 23 0.18
42 4 0.03
43 32 0.25
44 66 0.52
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (44 bp):
AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGACGACAG
Found at i:383489 original size:41 final size:42
Alignment explanation
Indices: 383377--383529 Score: 118
Period size: 44 Copynumber: 3.6 Consensus size: 42
383367 GACAATATCC
* *
383377 TATCTCCCTGAAGTTATAGTGGAGC-GGATTAAAATA-AAGGATCC-
1 TATCTCCCTGAAGTTACAGTGGAGCAGG-TT-CAATACAA-G--CCT
* **
383421 TATCTCTCTGAAGTTACAGCAGAGCAGG-TCACATA-AAGCCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGGTTCA-ATACAAGCCT
* * *
383462 TATCTCCCTGAAGTTACAGTGGGGCAGGTTGAATATGCAAGTCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGGTTCAATA--CAAGCCT
*
383506 TATCTCCCTGAGGTTACAGTGGAG
1 TATCTCCCTGAAGTTACAGTGGAG
383530 TAGACCGAAG
Statistics
Matches: 89, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
40 2 0.02
41 27 0.30
42 4 0.04
43 6 0.07
44 48 0.54
45 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (42 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGGTTCAATACAAGCCT
Found at i:384684 original size:44 final size:44
Alignment explanation
Indices: 384621--384994 Score: 458
Period size: 44 Copynumber: 8.6 Consensus size: 44
384611 NNNNNNNNNN
384621 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATC
384665 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATC
384709 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATC
384753 TTATCTCCCTTAAGCAGTAG-GGAGCAGATCGAAGACGGCGAATC
1 TTATCTCCC-TAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATC
* *
384797 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATC
* * * * * * ** * *
384841 TTATCTTCCTAAGCAATAGTGAAGTAGATC-TAGGCCACCAGTC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATC
** * ** *
384884 CAATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATTG-TAGATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA-ATC
* * **
384928 TTATCTTCCTAAGCAGTAGTGGAGCGGATC---G-CATC-AAGTC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAA-TC
*
384968 TTATCTCCTTAAGCAGTAGTGGAGCAG
1 TTATCTCCCTAAGCAGTAGTGGAGCAG
384995 GCAGAAGAAA
Statistics
Matches: 285, Mismatches: 39, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.00
40 27 0.09
41 1 0.00
43 39 0.14
44 207 0.73
45 10 0.04
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (44 bp):
TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATC
Found at i:384777 original size:88 final size:87
Alignment explanation
Indices: 384621--385085 Score: 457
Period size: 88 Copynumber: 5.4 Consensus size: 87
384611 NNNNNNNNNN
384621 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTAAGCAGTAGTG
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTAAGCAGTAGTG
384686 GAGCAGATCGAAGACGGCGAATC
66 GAGCAGATC-AAGACGGCGAATC
384709 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTTAAGCAGTAG-
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCC-TAAGCAGTAGT
384773 GGAGCAGATCGAAGACGGCGAATC
65 GGAGCAGATC-AAGACGGCGAATC
* * * *
384797 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCCTAAGCAATAGTG
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTAAGCAGTAGTG
* * * * ** * *
384862 AAGTAGATCTAGGCCACCAGTC
66 GAGCAGATCAAGACGGCGAATC
** * ** * *
384884 CAATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATTG-TAGATCTTATCTTCCTAAGCAGTAGT
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA-ATCTTATCTCCCTAAGCAGTAGT
* **
384948 GGAGCGGATC--G-CATC-AAGTC
65 GGAGCAGATCAAGACGGCGAA-TC
* * ** * *
384968 TTATCTCCTTAAGCAGTAGTGGAGCAG-GCAGAAGA-AACCAATCCTATCTCCCTAA--AGTTAC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGACGGCGAATCTTATCTCCCTAAGCAG-T--
* * **
385029 AGTGGAGCAGATTAAAACCAC-AGATC
62 AGTGGAGCAGATCAAGACGGCGA-ATC
* *
385055 TTATCTCCCTAAGCAGTAGTAGAGTAGATCG
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCG
385086 CATCAAGTCT
Statistics
Matches: 320, Mismatches: 43, Indels: 29
0.82 0.11 0.07
Matches are distributed among these distances:
81 2 0.01
82 1 0.00
83 15 0.05
84 45 0.14
85 1 0.00
86 1 0.00
87 108 0.34
88 137 0.43
89 10 0.03
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (87 bp):
TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATCAAGACGGCGAATC
Found at i:385873 original size:2 final size:2
Alignment explanation
Indices: 385866--386667 Score: 1604
Period size: 2 Copynumber: 401.0 Consensus size: 2
385856 TTTTATCATG
385866 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
385908 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
385950 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
385992 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386034 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386076 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386118 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386160 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386202 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386244 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386286 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386328 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386370 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386412 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386454 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386496 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386538 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386580 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386622 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
386664 CA CA
1 CA CA
386668 TATATTTTTC
Statistics
Matches: 800, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 800 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:391201 original size:23 final size:26
Alignment explanation
Indices: 391147--391203 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 26
391137 TACAAGGACT
391147 TATGACATATTTTAACCTAGTATAAAA
1 TATGA-ATATTTTAACCTAGTATAAAA
*
391174 TATGAATATTTTAA-TTA-TAT-AAA
1 TATGAATATTTTAACCTAGTATAAAA
391197 TATGAAT
1 TATGAAT
391204 GTTTAGCTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 10 0.34
24 3 0.10
25 2 0.07
26 9 0.31
27 5 0.17
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (26 bp):
TATGAATATTTTAACCTAGTATAAAA
Found at i:407531 original size:78 final size:79
Alignment explanation
Indices: 407431--407587 Score: 307
Period size: 78 Copynumber: 2.0 Consensus size: 79
407421 ACCATTATTC
407431 TCAATTAAAAATAAATCACAGAACCAATTAAAGTTATTGGTCTTCAAAATTCCATCTATCTTCAG
1 TCAATTAAAAATAAATCACAGAACCAATTAAAGTTATTGGTCTTCAAAATTCCATCTATCTTCAG
407496 AGGCGAAGTCAGAA
66 AGGCGAAGTCAGAA
407510 TCAATT-AAAATAAATCACAGAACCAATTAAAGTTATTGGTCTTCAAAATTCCATCTATCTTCAG
1 TCAATTAAAAATAAATCACAGAACCAATTAAAGTTATTGGTCTTCAAAATTCCATCTATCTTCAG
407574 AGGCGAAGTCAGAA
66 AGGCGAAGTCAGAA
407588 AACTTTTATG
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
78 72 0.92
79 6 0.08
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (79 bp):
TCAATTAAAAATAAATCACAGAACCAATTAAAGTTATTGGTCTTCAAAATTCCATCTATCTTCAG
AGGCGAAGTCAGAA
Found at i:408280 original size:13 final size:13
Alignment explanation
Indices: 408262--408287 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
408252 TTTCTCAAAG
408262 ATTTTCTCTTTTA
1 ATTTTCTCTTTTA
408275 ATTTTCTCTTTTA
1 ATTTTCTCTTTTA
408288 GATGGTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTTTCTCTTTTA
Found at i:409508 original size:15 final size:14
Alignment explanation
Indices: 409487--409522 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
409477 ATAATCCTTA
*
409487 ATAATTATCTTAAT
1 ATAATTATCCTAAT
409501 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
409516 ATAATTA
1 ATAATTA
409523 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:411965 original size:135 final size:136
Alignment explanation
Indices: 411693--411973 Score: 386
Period size: 135 Copynumber: 2.1 Consensus size: 136
411683 CAGATTGAAT
* * *
411693 TCATGTTTAATGTCCCGGCGGACTATTTATAATGCCATAGTCAAGCTATGGTCTTACACAATTGA
1 TCATATTTAATGTCCCGGCGGACTATTTATAATGCCATAGCCAAGCTATGATCTTACACAATTGA
* * *
411758 ATGCCCGTGTTTACTATCCCGATGGACTACCTATGTTGCCAGGGTCAAGCCAAGGCCTTACACCT
66 ACGCCCGTGTTTACTATCCCGATGAACTACCTATGTTGCCAGGGCCAAGCCAAGGCCTTACACCT
411823 AAGATC
131 AAGATC
** * *
411829 TCATATTTAATGTCTTGGTGGACTCTTTATAATGCCATAGCCAAGCTATGATCTTACACAATT-A
1 TCATATTTAATGTCCCGGCGGACTATTTATAATGCCATAGCCAAGCTATGATCTTACACAATTGA
* * * * * * *
411893 ACGCTCGTGTTTATTGTCCCGATGAACTACCTATGTTGCCATGGCCAAGCCAGGGTCTTACACTT
66 ACGCCCGTGTTTACTATCCCGATGAACTACCTATGTTGCCAGGGCCAAGCCAAGGCCTTACACCT
411958 GAA-ATC
131 -AAGATC
411964 TCATATTTAA
1 TCATATTTAA
411974 GATCCCAGCG
Statistics
Matches: 127, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
135 69 0.54
136 58 0.46
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.32
Consensus pattern (136 bp):
TCATATTTAATGTCCCGGCGGACTATTTATAATGCCATAGCCAAGCTATGATCTTACACAATTGA
ACGCCCGTGTTTACTATCCCGATGAACTACCTATGTTGCCAGGGCCAAGCCAAGGCCTTACACCT
AAGATC
Found at i:413143 original size:25 final size:25
Alignment explanation
Indices: 413115--413176 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 25
413105 ATTAAGTTAG
413115 TTAAATATATTTATAAT-ATATTATT
1 TTAAATATATTTATAATAATA-TATT
*
413140 TTAAATATATATT-TTATAATATATT
1 TTAAATATAT-TTATAATAATATATT
413165 TTAAATA-ATTTA
1 TTAAATATATTTA
413177 GTTAATTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
23 2 0.06
24 2 0.06
25 24 0.73
26 5 0.15
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (25 bp):
TTAAATATATTTATAATAATATATT
Found at i:413146 original size:14 final size:14
Alignment explanation
Indices: 413090--413164 Score: 59
Period size: 14 Copynumber: 5.2 Consensus size: 14
413080 AATATTTTTA
413090 ATTATTTTAAATAT
1 ATTATTTTAAATAT
413104 AATTAAGTTAGTTAAATAT
1 -ATT-A-TT--TTAAATAT
*
413123 A-T-TTAT-AATAT
1 ATTATTTTAAATAT
413134 ATTATTTTAAATAT
1 ATTATTTTAAATAT
413148 A-TATTTTATAATAT
1 ATTATTTTA-AATAT
413162 ATT
1 ATT
413165 TTAAATAATT
Statistics
Matches: 49, Mismatches: 2, Indels: 18
0.71 0.03 0.26
Matches are distributed among these distances:
11 6 0.12
12 2 0.04
13 10 0.20
14 14 0.29
15 4 0.08
16 1 0.02
17 3 0.06
18 1 0.02
19 8 0.16
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (14 bp):
ATTATTTTAAATAT
Found at i:413172 original size:14 final size:14
Alignment explanation
Indices: 413118--413173 Score: 59
Period size: 14 Copynumber: 4.2 Consensus size: 14
413108 AAGTTAGTTA
413118 AATATA-TTTATAAT
1 AATATATTTTA-AAT
413132 -ATATTATTTTAAAT
1 AATA-TATTTTAAAT
413146 -ATATATTTT--AT
1 AATATATTTTAAAT
413157 AATATATTTTAAAT
1 AATATATTTTAAAT
413171 AAT
1 AAT
413174 TTAGTTAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
11 2 0.05
12 9 0.24
13 9 0.24
14 13 0.35
15 4 0.11
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
AATATATTTTAAAT
Found at i:413175 original size:10 final size:12
Alignment explanation
Indices: 413118--413175 Score: 50
Period size: 12 Copynumber: 4.8 Consensus size: 12
413108 AAGTTAGTTA
413118 AATATA-TTTAT
1 AATATATTTTAT
*
413129 AATATATTATTTTAA
1 -A-ATA-TATTTTAT
413144 ATATATATTTTAT
1 A-ATATATTTTAT
413157 AATATATTTTA-
1 AATATATTTTAT
413168 AATA-ATTT
1 AATATATTT
413176 AGTTAATTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
10 4 0.10
11 4 0.10
12 11 0.27
13 11 0.27
14 7 0.17
15 4 0.10
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
AATATATTTTAT
Found at i:429593 original size:41 final size:40
Alignment explanation
Indices: 429547--429644 Score: 135
Period size: 41 Copynumber: 2.4 Consensus size: 40
429537 CAGAACACCG
*
429547 GCATTAAGCCTGCTAGACATATAGTCTGAAA-ATTTTTACC
1 GCATTAAGCCTGCTAGACATATAGTCCGAAATA-TTTTACC
*
429587 GACATTAAGCCTGCTAGACGTATAGTCCGAAATATTTTACCC
1 G-CATTAAGCCTGCTAGACATATAGTCCGAAATATTTTA-CC
*
429629 GCGTTAAGCCTGCTAG
1 GCATTAAGCCTGCTAG
429645 GCACAAAGGC
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
40 1 0.02
41 47 0.90
42 4 0.08
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (40 bp):
GCATTAAGCCTGCTAGACATATAGTCCGAAATATTTTACC
Found at i:429985 original size:37 final size:37
Alignment explanation
Indices: 429866--429985 Score: 111
Period size: 37 Copynumber: 3.2 Consensus size: 37
429856 ATATAAGAAA
*
429866 CATACTTTAATTTCCAACTCAATAACTTGATTAAATG
1 CATACATTAATTTCCAACTCAATAACTTGATTAAATG
* * * *
429903 CATACA-TATATGTTCGAATCTCCCTATAA-TT-ATAAAATT
1 CATACATTA-AT-TTCCAA-CT--CAATAACTTGATTAAATG
* *
429942 CATACATTAATTCCCAACTCAATAACTTGATTATATG
1 CATACATTAATTTCCAACTCAATAACTTGATTAAATG
429979 CATACAT
1 CATACAT
429986 ATTTATATTC
Statistics
Matches: 64, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
35 5 0.08
36 4 0.06
37 21 0.33
38 9 0.14
39 16 0.25
40 4 0.06
41 5 0.08
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.37
Consensus pattern (37 bp):
CATACATTAATTTCCAACTCAATAACTTGATTAAATG
Found at i:432411 original size:9 final size:9
Alignment explanation
Indices: 432397--432433 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
432387 TATAGTTTGA
432397 TATTCGAAT
1 TATTCGAAT
432406 TATTCGAAT
1 TATTCGAAT
*
432415 TATTCGAGT
1 TATTCGAAT
432424 TATTCGAAT
1 TATTCGAAT
432433 T
1 T
432434 TGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:435676 original size:25 final size:25
Alignment explanation
Indices: 435648--435696 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
435638 CACTTCACTT
* *
435648 AACTTTTAG-TTTTTTTTCTTCAAAA
1 AACTCTTAGATTTTCTTT-TTCAAAA
435673 AACTCTTAGATTTTCTTTTTCAAA
1 AACTCTTAGATTTTCTTTTTCAAA
435697 CTTATCCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.29, C:0.14, G:0.04, T:0.53
Consensus pattern (25 bp):
AACTCTTAGATTTTCTTTTTCAAAA
Found at i:442135 original size:11 final size:12
Alignment explanation
Indices: 442119--442155 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
442109 AGAAAACTCA
442119 AAAAAT-AAAGT
1 AAAAATAAAAGT
*
442130 AAAAATAAAAAT
1 AAAAATAAAAGT
442142 AAAAATAAAAGT
1 AAAAATAAAAGT
442154 AA
1 AA
442156 GTAAATGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 6 0.26
12 17 0.74
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (12 bp):
AAAAATAAAAGT
Found at i:442140 original size:6 final size:6
Alignment explanation
Indices: 442119--442151 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
442109 AGAAAACTCA
*
442119 AAAAAT -AAAGT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
442152 GTAAGTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:442173 original size:28 final size:23
Alignment explanation
Indices: 442118--442173 Score: 58
Period size: 27 Copynumber: 2.3 Consensus size: 23
442108 AAGAAAACTC
442118 AAAAAATAAAGTAAAAATAAAAA
1 AAAAAATAAAGTAAAAATAAAAA
*
442141 TAAAAATAAAAGTAAGTAAATGAAAAA
1 AAAAAAT-AAAGTAA--AAAT-AAAAA
*
442168 GAAAAA
1 AAAAAA
442174 GAACTCAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 6 0.22
24 7 0.26
26 4 0.15
27 10 0.37
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (23 bp):
AAAAAATAAAGTAAAAATAAAAA
Found at i:442983 original size:44 final size:44
Alignment explanation
Indices: 442909--443013 Score: 158
Period size: 44 Copynumber: 2.4 Consensus size: 44
442899 GATATGCTCT
*
442909 ACTACTGCTTAGGGTGACAAAATCTACAATCTTCAACCTACTCC
1 ACTACTGCTTAGGGTGACAAAATCCACAATCTTCAACCTACTCC
* * *
442953 ACTACTGCTTAGGGTGACAGAATCCGCAATCTTCAACCTACTCT
1 ACTACTGCTTAGGGTGACAAAATCCACAATCTTCAACCTACTCC
442997 ACTA-TCGCTTAGGGTGA
1 ACTACT-GCTTAGGGTGA
443014 TAGGACTAAT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
43 1 0.02
44 55 0.98
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (44 bp):
ACTACTGCTTAGGGTGACAAAATCCACAATCTTCAACCTACTCC
Found at i:443186 original size:132 final size:132
Alignment explanation
Indices: 442949--454522 Score: 5860
Period size: 132 Copynumber: 88.1 Consensus size: 132
442939 CTTCAACCTA
* *
442949 CTCCACTACTGCTTAGGGTGACAGAATCCGCAATCTTCAACCTACTCTACTA-TCGCTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTG
* * * *
443013 ATAGGACTAATGGTTTAAATGTGCATCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
443078 CTG
130 CTG
* * * * * *
443081 CTCCACTACTGTTTAAGGTGACAGAATCTGTAATCTTCAACCTACTACACTACTACTTAGGGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
*
443146 TA-GATCTAATGGCTTAAATCTGCTTCTCCATTGTATTGGGAAGATAAGATTCACCATCTTCGAT
66 TAGGA-CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
443210 CTG
130 CTG
* * * * *
443213 CTTCACTACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTTCTTAGGATGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
*
443278 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
443343 TG
131 TG
* * * *
443345 CAT-CACTACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGATA
1 C-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * * *
443409 ATATGACTAATGGCTTAAATCTGCTTCTCCACGGTATTGGGAAGATCAGATTCACCATCTTCAAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
443474 CTA
130 CTG
* * *
443477 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACAGCTTTGGGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
443542 TTA-GACTAATGGCTTAAATCTGCTTCTCCACTATCTTGAGAAGATAAGAGTCACCATCTTCGAT
66 -TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
443606 CCG
130 CTG
* ** * *
443609 CTCTAC-AAGGTCTTAGGGTAACAGAATCTGCATTCTTCAACCTACTCCACT-CTGCTTAGGGTG
1 CTCCACTACTG-CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * *
443672 ATAGGACTACTGGCTTAAATCTGTTTCTCCACTGTATTGGGAAGATAAGGTTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
443737 CTA
130 CTG
* * * * * * *
443740 TTCCACTACTACTTAGGGTGACAGAATCTGCAAACATT-AATCGACTCCATTACTTCTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATC-TTCAACCTACTCCACTACTGCTTAGGGTG
*
443804 ATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
443869 CTAG
130 CT-G
* * *
443873 -TCCAGTAATGCTTAGGGTG-CAGAATCTACAATCTTCAACCTACTCCACT-CTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
443935 TAGCACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
444000 TAG
131 T-G
* * *
444003 -TCCAGTAATGCTTAGGGTG-CAGAATCTACAATCTTCAACCTACTCCACT-CTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
444065 TAGCACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
444130 TAG
131 T-G
* * *
444133 -TCCAGTAATGCTTAGGGTG-CAGAATCTACAATCTTCAACCTACTCCACT-CTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
444195 TAGCACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
444260 TAG
131 T-G
* * *
444263 -TCCAGTAATGCTTAGGGTG-CAGAATCTACAATCTTCAACCTACTCCACT-CTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
444325 TAGCACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
444390 TAG
131 T-G
* * *
444393 -TCCAGTAATGCTTAGGGTG-CAGAATCTACAATCTTCAACCTACTCCACT-CTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * ** *
444455 TAGCACTAATGGCTTAAATCTGCTTCTCCACTGTATGGGGAAGATAAGATTCATTATATTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
444520 AG
131 TG
* * * * **
444522 CTCCACTACTGTTTAGGGTGGCAGAATCTGTAATCTGCAACCTACTCCACTACTGCTTAGGAAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
444587 TAGGTCTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
444652 TAG
131 T-G
* * * **
444655 -TCCAGTAATGCTTAGGGTG-CAGAATCTACAATCTTCAACCTACTCCACTACTGCTTAGGAAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * * ** *
444718 TTGGACTAATGGCTTACATTTACTTCTCCACTATCTTAAGAAGATATA-ATTGACCATCTTCGAT
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATA-AGATTCACCATCTTCGAT
*
444782 CCG
130 CTG
* *
444785 CTGCC-CTACTGCTTAGGGTGACAAAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTG
1 CT-CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * *
444849 ATAGCACTAATGACTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
444914 AC-G
130 -CTG
* *
444917 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCGACCTACTCCACTACTTCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * **
444982 TAGGACCAATGGCTTCAATCTACTTCTCCACTGTATTGGGAAGATGAGATTCAGTATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
445047 TG
131 TG
* * * *
445049 TTCCACTACTGCTTAGGGGGACAGAATCTGCAATTTTCAACCTACTCCAGTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
445114 TAGGACTAACGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCAAT-
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
445178 TCG
131 T-G
* * * * * *
445181 CTCCACAACTGTTTAGGGTGACAAAATCTGTAATCTTCAACCTACTCCACTACTGCTTTGGGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
445246 TAAGTCTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGAAAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
445311 TA
131 TG
*
445313 CTCCACTACTGCTTAGGATGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAT-
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG-TG
* * * ** * * * *
445377 ATTGGACTAATGGCTTACATCTGCTTCTCCACTATCCTGAGAAGGTATGATTCACCATCTTCGAA
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
445442 CCG
130 CTG
* * * *
445445 CTGCATTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGGTTAGGGTAA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * *
445510 TAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACAATCTTCAATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
445575 TG
131 TG
* * * * * *
445577 CTTCACTACTGGTTAGGGTGACAGAATCTGTAATCTTCAACCGACTCCACTACTGTTTAGGATGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
445642 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
445707 CG
131 TG
* * *
445709 CTCCACAACTGCTTAGGGTAACAGAATCTGCAATCTTCAACCTACTCAACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
445774 TAGGACTAATGGCTTAAATTTGCTTCTCCACTGTATTGGGAAGATAAGAATCATCATATTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
445839 TG
131 TG
* * * * *
445841 C-CTCACTACTGTTTAGGGTGACAGAATCTGCAATCCTGAACCAACTCCACT-GTGGCTTAGGGA
1 CTC-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGG-
*
445904 T-ATAGGACTAATGGCTTAAATCTGCTTTTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
63 TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
445968 ATCTG
128 ATCTG
* * *
445973 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTGCTGCTGAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
446038 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACGATAAGATTCACAATCTTCAACC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
446103 TA
131 TG
* * * * * * * * *
446105 CTCCACCACTGCTTAGGGTGAAAGAA-CT--AATGGCTTAAATCTTCTTCTCCACTG-TATTGGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGGG
* * * * * * * * * * *
446166 AAGATAAGA-TGCAT--CAT-ATTC-GATCTGCTCCACTACTACTTAGGG-TGA-CAGAATCTGC
63 -TGATAGGACT-AATGGCTTAAATCTG--CTTCTCCACT-GTA-TT-GGGAAGATAAGATTC-AC
* * *
446224 AATCTTCTG-CCTA
120 CATCTTC-GATCTG
* * * * * * * * *
446237 CTCCACTACTG-TTGAGGGTGATAGGA-CT--AATGGCTTAAATCTGCTTCTCCACTG-TATTGG
1 CTCCACTACTGCTT-AGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGG
* * * * * * * * * * *
446297 GACT-ATAAGATTCACAAT--CTTCAACCTACTCCACCACTGCT-TAGGG-TGAT-AGA-ACA-A
62 G--TGATAGGA--C-TAATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACC
**
446354 ATGGCTTAAATCTG
121 AT--CTTCGATCTG
* * * * ** * * * * * * *
446368 CTTCTCCACTG-TATTGGGAAAATAAGATTCAT-C-ATATTCGATCTACACCACTACTGTTTAGG
1 CTCCACTACTGCT-TAGGG-TGA-CAGAATC-TGCAATCTTCAACCTACTCCACTACTGCTTAGG
* ** * * * * * * * * *
446430 GTGACAAAATCTATAAT--ATTTAACCTACTCCACTACTGCTCA--GGG-AGATAGGACT-A--A
62 GTGATAGGA-C--TAATGGCTTAAATCTGCTTCTCCACTG-T-ATTGGGAAGATAAGATTCACCA
** *
446487 TGGCTTAAATCTA
122 T--CTTCGATCTG
* * * * * ** * * * * * *
446500 CTTCTCCACTGTATTTGGAAGATAAGATTC-ACCATCTTCGATCTACTCCACTACTGCTTAGGGT
1 CTCCACTACTG-CTTAGGGTGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
* * * * * * * * * *
446564 GACAGAATCTGCAA--CCTTCAACCTAC-TCTACTACTGCT-TAGGG-TGATAGGATT-A--ATG
64 GATAGGA-CT--AATGGCTTAAATCTGCTTCT-CCACTG-TATTGGGAAGATAAGATTCACCAT-
**
446621 GCTTAAATCTG
123 -CTTCGATCTG
* * * * * * * * * * * * *
446632 CTTCTCCACTG-TATTGGGCAGATAAGATTC-ACCATCTTCGATCTGCAT-CACTACTGGTTAGG
1 CTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAACCTAC-TCCACTACTGCTTAGG
* * * * ** * * * * * * * * * ****
446694 GTTACAGAATCTGATATCTTGAA-CCGACTCCACTACTGCT-TAGGG-TGATAGGACT-AGTGGC
62 GTGATAGGA-CTAATGGCTTAAATCTG-CTTCTCCACTG-TATTGGGAAGATAAGATTCACCATC
** *
446755 TTAAATCTC
124 TTCGATCTG
* * * * * * * * * * * *
446764 CTTCTCCACTG-TATTGGGAAGATAAGATTC-ACCATCTTCGATC-GCTCCACTACTGCTTAGGG
1 CTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG
* ** * ** * * * * * *** *
446826 TGACA-G---AAT--CTGCAATCTTCAAC-CTAGCT-TA--GGG-TGATAGGACTAATGGT-TTA
63 TGATAGGACTAATGGCTTAAATCTGCTTCTCCA-CTGTATTGGGAAGATAAGATTCACCATCTTC
*
446879 AATCTG
127 GATCTG
* * * ** ** * * * * *
446885 CTTCTCCACTG--TATTGTGA-AGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGATTAG
1 CTCCACTACTGCTTAGGGTGACAG--AATCTGCA--ATCTTCAACCTAC-TCCACTACTGCTTAG
* * * * * * * * * * * * *
446946 TGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGGG-TGATAGGACT-A--A
61 GGTGATAGGA-CT--AATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACCA
**
447004 TGGCTTAAATCTG
122 T--CTTCGATCTG
* * * * * * * * * * *
447017 CTTCTCCACTG-TATTGGGATGATA-AGAT-TAACCATCTTCGATCTGCTCCACTATTGCTTAGG
1 CTCCACTACTGCT-TAGGG-TGACAGA-ATCT-GCAATCTTCAACCTACTCCACTACTGCTTAGG
* * * * * * * * * * **
447079 GTGACAGAATCTGCAAT--CTTCAACCT-ATTC-CAGTACTGCT-TTGGG-TGATAGGACTAATT
62 GTGATAGGA-CT--AATGGCTTAAATCTGCTTCTC--CACTG-TATTGGGAAGATAAGATTCACC
**
447138 A-CTTAAATCTG
121 ATCTTCGATCTG
** * * * * * * * * * *
447149 CTTTACCACTG-TATTGGGAAGATA-AGAT-T-CATTATATACGATCTGCTCCACTACTGTTTAG
1 CTCCACTACTGCT-TAGGG-TGACAGA-ATCTGCA--ATCTTCAACCTACTCCACTACTGCTTAG
* ** * * * * * * * *
447210 GGTGACAAAATCTGTAAT--CTTCAATCTACTCCACTACTGCT-TAGGG--GGT-AG-GTCTA--
61 GGTGATAGGA-C--TAATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTC-ACC
**
447266 ATGGCTTAAATCTG
121 AT--CTTCGATCTG
* *** ** ** * * * * * * * *
447280 TTTTTCTACTTTATTAGGAAGATAAGATTC-ACCATCTTCGATCTAGTCCACTAATGCTTAGGGT
1 CTCCACTAC-TGCTTAGGGTGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
* * *** * * * * * * * * * *
447344 GACAGAATCTAAAATCTTCAACCTACTACACTACTGT-TTAGGG-TGACAA-AATCTACAATCTT
64 GATAGGA-CTAATGGCTTAAATCTGCTTCTCCACTGTATT-GGGAAGATAAGATTC-ACCATCTT
* *
447406 CAAT-TAA
126 CGATCT-G
* * * * * * * * * * *
447413 CTCCACTACTGCTTAGGATGATAGGA-CT--AATGCCTTAAATCTGCTTCTCCA-TGGTATTGGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGGG
* * ** * * * * * * * *
447474 AAGATCA-GATTCACCAT--CTTCGATCTGCATCACTACTGT-TTAGGG-TGA-CAGAATCTGCA
63 -TGAT-AGGACT-A--ATGGCTTAAATCTGCTTCTCCACTGTATT-GGGAAGATAAGATTC-ACC
* * *
447533 ATCTGC-AACCG
121 ATCTTCGATCTG
* * * * * * * * * * * *
447544 ACTCCACTAGTTCTTAGGATGATAGGA-CT--AATGGCTTAAATCTCCTTCTCCACTG-TATTGG
1 -CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGG
* * * ** * * * * * * *
447605 GAAGATAAGATTCACCAT--CTTCGATCTGCTCCACTACTGCT-TAGGG-TGA-CAGAATC-CGC
62 G-TGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCAC-C
* ** * *
447664 AATATTTAACCTA
121 -ATCTTCGATCTG
* * * ** * * * * * *
447677 CTCAACTACTGCTTAGGGTGATAGGA-CAAACGA-CTTAAATCTGCTTTCCACGA-T-ATT-GGG
1 CTCCACTACTGCTTAGGGTGACAGAATC-TGCAATCTTCAACCTAC--TCCACTACTGCTTAGGG
* * * ** * * * * * * * * * *
447737 AAGATAAGATTCACCAT--CTTCGATCTACTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAA
63 -TGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTC-ACCA
* * * *
447797 CCTTCAACCTA
122 TCTTCGATCTG
* * * * * * * * *
447808 CTCCACTACTGCTTAGGGTGATAGGAT-T--AATGGCTTAAATCTGCTTCTCCACTG-TATTGGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGGG
* * * ** * * * * * * * *
447869 AAGATAAGATTCACCAT--CTTCTATCTGCATCACTACTGGT-TAGGG-TG-TCAGAATCTGA-A
63 -TGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGATAAG-AT-TCACC
* *
447928 ATCTTC-AACCG
121 ATCTTCGATCTG
* * * * * * * * * *
447939 ACTCCACTACTGCTTAGGGTGATAGGA-CT--AGTGGCTTAAATCTCCTTCTCCACTG-TATTGG
1 -CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGG
** * * ** * * * * * * * * *
448000 GAAAATAAGATTCACCAT--CTTCGATCTACTCCACTACTGCTCTGCTTAGGGGACAGAA-ATCC
62 G-TGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACTG---T-ATT-GGGAAGATAAGATTC
* * * * *
448062 GCAATC-TCAACCTA
118 ACCATCTTCGATCTG
* * * * * * * * * * *
448076 CTCTACTACTGCATAGGGTGATAGGA-CT--AATGGCTTAAATCTGCTTCTCCACTG-TATTGGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGGG
* * * ** * * * * * * * * ***
448137 AAGATAAGATTCACCAT--CTTCGATCTGCATCACTACTGGT-TAGCG-TGA-CAGAATCTGTAA
63 -TGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGATAAGATTC-ACCA
* ** * *
448197 TTTTTAACCTA
122 TCTTCGATCTG
* * * * * * * * *
448208 CTCCACTACTGCTTAGGGTGATAGGAA----AAATGGCTTAAATCTGCTTCTCCACTG-TATTGG
1 CTCCACTACTGCTTAGGGTGACA-GAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGG
** * * *** ** * * * * ** * * * *
448268 AAAGATAAGATTAACCATCTTCGATCTGCTCCACTACTG-CTTGGGGTGA-CAGAATCTGCAATC
62 -GTGATAGGACTAA-TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTC-ACCATC
* * *
448331 TTCAACCTA
124 TTCGATCTG
** * * * * * * * * *
448340 CTCCGGTACTGCTTTGGGTGATAGGA-CT--AATGGCTTAAATCTGCTTCACCACTGAATT-GGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTG-CTTAGGG
* * * * ** ** * * * * * * *
448401 AAGATAAGATTCAT-TATATGCGATCTGCTCCACTACTGT-TTAGGG-TGACAAAATCTGTA--A
63 -TGATAGGACTAATGGCT-T-AAATCTGCTTCTCCACTGTATT-GGGAAGATAAGAT-T-CACCA
* * *
448461 TCTTCAACCTA
122 TCTTCGATCTG
* ** * * * ** *** * * *
448472 CTCCACTACTGCTTAGGGAGTTAG-GTCT--AATAGCTTAAATCTGTTTTTCTATTGTATTAGGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTG-CTTAGGG
* * * ** * * * * * * * * *
448534 AGATAAGATTCACCAT--CTTCGATCTAG-TCCACTAATGCT-TAGGG-TGA-CAGAATCTACAA
63 TGATAGGACT-A--ATGGCTTAAATCT-GCTTCTCCACTG-TATTGGGAAGATAAGATTC-ACCA
* * *
448593 TCTTCAACCTA
122 TCTTCGATCTG
* * ** * ** * *
448604 CTCCACTACTACTTAGGGAGATTGGA-CT--AATAGCTTACATTTGCTTCTCAACTA-T-CTT-G
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTT-CA--ACCTACTCCACTACTGCTTAG
** * * ** * * * * * * * *
448663 AGAAGATATGATTCACCAT--CTTCGATCCGCTGCACTAC--TACTTAGGG-TGA-CAGAATCTG
61 -GGTGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACTGTA-TT-GGGAAGATAAGATTC-A
* * * *
448722 CAATCTTCAACCTA
119 CCATCTTCGATCTG
* * * * * * * *
448736 CTCCACTACTGCTTAGGGTTATAGGA-CT--AATGGCTT-ATATCTGCTTC-TTCACTG-TATTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCA-ACCTACTCCACT-ACTGCT-TAG
* * * * * ** * * * * * ***
448795 GGAAGATAAGATTAACGATCTTCGATCTGC-TCTACTACTGCT-TAGGG-TGA-CAGAATCTGTA
61 GG-TGATAGGACTAATG-GCTTAAATCTGCTTCT-CCACTG-TATTGGGAAGATAAGATTC-ACC
* * * *
448856 ATTTTCAACCTA
121 ATCTTCGATCTG
* * * * * ** * * * * *
448868 CTCTAGTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATTTGCTTCTCTATTG-TATTGGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGGG
* * * * *** ** * * * * ** * ***
448929 AAGATAAGATTCATCATATTCGATCTGCTCCACTACTGT-TTAGGG-TGA-CCGAATCTGTAATC
63 -TGATAGGACTAAT-GGCTTAAATCTGCTTCTCCACTGTATT-GGGAAGATAAGATTC-ACCATC
* * *
448991 TTCAACCTA
124 TTCGATCTG
* * * * * * * * *
449000 CTCCACTACTGCTTAGGGTGAGAGGA-CT--AATGGCTTAAATCTGCTTCTCCACTG-TATTGGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGGG
* * * ** * * * ** * * ***
449061 AAGATAAGATTCACCAT--CTTCGATCTGTTTCACTACTGGT-TT-GGCTGA-CAGAATCTGTAA
63 -TGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGATAAGATTC-ACCA
* *
449121 TCTTC-AACCG
122 TCTTCGATCTG
* * * * * * * * * * *
449131 ACTCCACTACTGCTTAGGGTGATAGGAGTAGTG---GCTTAAATCTCCTTCTCCACTGTATTAGG
1 -CTCCACTACTGCTTAGGGTGACA-GAAT-CTGCAATCTTCAACCTACTCCACTACTG-CTTAGG
** * * ** * * * *
449193 AAGATAAGATTCACCAT--CTTCGATCTG---CTCCACTACTACTTAGGG-TGA-CAGAATC-CG
62 GTGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACT-GTA-TT-GGGAAGATAAGATTCAC-
* * *
449250 CAATCTTCAACCTA
120 C-ATCTTCGATCTG
* * * * * * * * * * * * *
449264 CTCTACTACCGCTTAGGGTGATAGGA-C--AAATGGCTTAAATCTGCTTCTCCACTGTATTAGGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTG-CTTAGGG
* * * * ** * * * * * * ***
449326 AGATAAGATTCACCAT--ATTTGATATGCTCCACTACTGT-TT---AAGGTGACAGAATCTGTAA
63 TGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT-A-AGATTC-ACCA
* * *
449385 TCTTCAACCTA
122 TCTTCGATCTG
* * * * * * * * *
449396 CTGCACTACTGCTTAGGGAGATAG-ATCT--AATGGCTTAAATCTGCTTCTCGACTG--TAGTGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCTTA--GG
* * * * ** ** * *** * * * * * *
449456 GAAGATAAGATTCATCATCTTCGATCTGCATCAGTACTGGT-TAGGG-TGA-CAGAATCTGCAAT
62 G-TGATAGGACTAAT-GGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGATAAGATTC-ACCAT
* *
449518 CTTC-AACCG
123 CTTCGATCTG
* * * * * * *
449527 ACTCCACTACTTCTTAGGATGATAGGA-CTG--ATGGATTAAATCTACTTCTCCACTA-T-CTTA
1 -CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAA-C--CTACTCCACTACTGCTTA
* ** * * ** ** * * * * * * * *
449587 AGAAGATAAGATTCACCAT--CTTCGATCCACTTCACAACTCCT-TAGGGTA-A-CAGAATCTGC
60 GGGTGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGATAAGATTC-AC
* * * *
449647 AATCTTCAACCTA
120 CATCTTCGATCTG
* * * * * * * * * * *
449660 CTCAACTACTACTTAGGGTGATAGGA-CT--AATGGCTTAAATCTGCCCCTCCACTG-TATTGGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGGG
* * * * * * * * *
449721 AAGATAAGATTCACCAT--CTTCAAT-T--TGCTCCACTACTACTTAGGGTAACAGAATG-TGCA
63 -TGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACT-GTA-TT-GGG-AAGATAA-GATTCA
* *
449780 --ATCTT-TAACTG
119 CCATCTTCGATCTG
* ** * * * * *
449791 ACTCCACTACTTCTTAGGGTGACAGAATCTTTAATCTTCAACCGACTGCACTACAGCTTTGGGAG
1 -CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * * * * *
449856 ATTGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGAGAAGAGAAGATTCACCATATTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
449921 CCG
130 CTG
* * * * *
449924 CTCCACAAC-GTCTTAGGGTAACAGAATCTGCAATCTTTAACCTACTCTACT-CTGCTTAGGGTC
1 CTCCACTACTG-CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * *
449987 ATAGGACTACTGGCTTAAATCTGCTTCTCCACCGTATTGGGAAGATAAGATTCACCATATTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
450052 CTA
130 CTG
*
450055 CTCCACTACTGCTTAGGGTGACAGATTCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
450120 TAAGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAATATAAGATTCACCATCTTCAATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
450185 TG
131 TG
* * * *
450187 CAT-CACTACTGGTTAGGGTGACAGAATTTGCAATCTTCAA-CTGACTCCACTACTGCTTATGAT
1 C-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGT
* *
450250 GATAGGACTAATGCCTTAAATCTGCTTCTCCA-TGGTATTGGGAAGATCAGATTCACCATCTTCG
64 GATAGGACTAATGGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGATAAGATTCACCATCTTCG
*
450314 ATCTA
128 ATCTG
* * * *
450319 CACCACTACTCCTTAGGGTGACAGAATCTTCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
450384 TAGGACGAATGGCTTAGATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCAGCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
450449 TC
131 TG
* * * *
450451 CTCCACTATTACTTAGGGGGACAGAATCTGGAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * * *
450516 TAGGACTAATGACTTAAATCTGCTTCTCCACTGTTTTGGGAAAATAAGATTCGCCAGCTTTGATA
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
450581 TC
131 TG
* *
450583 CTCCACTATTACTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
450648 TAGGACCAATGACTTAAATCTGCTTCTCCACTGTATTGGGTATATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
450713 TT
131 TG
* ** * * * *
450715 CTCCTCTACTGCTTAATGTGACAGAATCTGCAATTTTAAACCTACACCACGACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * *
450780 TAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
450845 TG
131 TG
** *
450847 CTCCACTACTATTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
450912 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTTGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
450977 TG
131 TG
* * * *
450979 CTTCACAACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
451044 TAGGACCAATGACTTAAATCTGCTTCTCCACTGTATTGGGTATATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
451109 TT
131 TG
* ** * * * *
451111 CTCCTCTACTGCTTAATGTGACAGAATCTGCAATTTTAAACCTACACCACGACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * ** * *
451176 TAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATCAGATTTATTATATTTGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
451241 TG
131 TG
* * * *
451243 CT----T-C-AC--A-----ACTGAATCTACAA--TTCAA-CTGACTCCACTACTGCTTAGGATG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTG
*
451292 ATAGGACTAATGCCTTAAATCTGCTTCTCCA-TGGTATTGGGAAGATCAA-ATTCACCATCTTCG
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGAT-AAGATTCACCATCTTCG
451355 ATCTG
128 ATCTG
* *
451360 CTCCACTACTCCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTCAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
451425 TAGGA-TGAATGGCTGAAATCTGCTTCTCCATTGTATTGGGAAGATAAGAGTCACTATCTTCGAT
66 TAGGACT-AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
451489 CTG
130 CTG
* * * *
451492 CTCCACTATTACGTAGGGTGACAGAATCTGCAATCGTCAACCTACTCCACTACTGCTT-GGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
451556 TAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAATATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
451621 TG
131 TG
* * * * * * *
451623 CTCCTCTACCGCTTAAGGTGAAAGAATCTGTAATTTTCAACCTACTCTACTACTGCCTT-GGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG-CTTAGGGTG
*
451687 ATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
451752 CTG
130 CTG
* * *
451755 CAT-CACTACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTGCTGCTTAGGGTG
1 C-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* *
451819 ATAGGACTAGTGGCTTATATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
451884 CTG
130 CTG
* *
451887 CAT-CACTACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTA-GG-G
1 C-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
451949 -T--GA-T-A-GG---AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
452005 CTG
130 CTG
* * *
452008 CAT-CACTACTGGTTAGGGTGACAGAATTTGCAATCTTCAA-CTGACTCCACTACTGCTTAGGAT
1 C-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGT
* * ** * *
452071 GATAAGACTAATGCCTTAAAGGTACTTCTCCA-TGGTATTGGGAAGATCAGATTCACCATCTTCG
64 GATAGGACTAATGGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGATAAGATTCACCATCTTCG
452135 ATCTG
128 ATCTG
* * *
452140 CACCACTACTCCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * *
452205 TAGGACGAATGGCTTAAATCTGCTTCTCCACTGTATTGGTAAAATAAGATTCAACAGCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
452270 TC
131 TG
* * *
452272 CTCCACTATTACTTAGGGTGACAGAATCTGGAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
452337 TAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCAGCTTCGATA
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
452402 TC
131 TG
** * * *
452404 CTTTACTATTACTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * ** * *
452469 TAGGACGAATGGCTTAAATCTGCTTCTCCACTGTATGGGGAAGATAAGATTCATTATATTCGATT
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
452534 TG
131 TG
* * * * * * * * * *
452536 CTCCACTACTGTTTAGGGAAGATGAGATTC-ACGATCTTCGATCTACAT-CACTACTGGTTAGAG
1 CTCCACTACTGCTTAGGG-TGA-CAGAATCTGCAATCTTCAACCTAC-TCCACTACTGCTTAGGG
* * * * * * * * ** * * *
452599 TGACAGAATCTGTAAT--CTTCAA-CCGACTCCACTACTG-CTTACGATGATAGGACT-A--ATG
63 TGATAGGA-C--TAATGGCTTAAATCTG-CTTCTCCACTGTATTGGGAAGATAAGATTCACCAT-
**
452657 GCTTAAATCTG
123 -CTTCGATCTG
* * * ** * * * ** * *
452668 CTTCTCCACTG--TATGGG-GA-AGATAAGATTCATTATATTCGATTTGCTCCACTACTGTTTAG
1 CTCCACTACTGCTTA-GGGTGACAG--AATCTGCA--ATCTTCAACCTACTCCACTACTGCTTAG
* * * * * ** * * * * * * * **
452729 GGAAGAT-GAGATTCACGATCTTCGATCTACATCACTACTG-GTT-AG-AG-TGACAGAATCTGT
61 GG-TGATAG-GACTAATG-GCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT-A-AGATTC-AC
* * *
452789 AATCTTC-AACCG
120 CATCTTCGATCTG
* *
452801 ACTCCACTACTGC-T----T-AC----T-TGAAATCTTCAA-CTGACTCCACTACTGCTTAGGAT
1 -CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGT
* *
452854 GATAGGACTAATGCCTTAAATCTGCTTCTCCA-TGGTATTGGGAAGATCAGATTCACCATCTTCG
64 GATAGGACTAATGGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGATAAGATTCACCATCTTCG
452918 ATCTG
128 ATCTG
* * *
452923 CACCACTACTTCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
452988 TAGGACGAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCAGT-TTCGAT
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA-TCTTCGAT
*
453052 CTC
130 CTG
* * * * *
453055 CTCCACTATTACTTAGGGTGACAGAATCTGGAATCTTCAACCTACTCCACTAATGCTTAGGCTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * *
453120 TAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGAGAAAATAAGATTCACCAGCTTCGATA
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
453185 TC
131 TG
* *
453187 CTCCACTATTACTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * *
453252 TAGGACCAATGACTTAAATCTGTTTCTCCACTGTATTGGGTATATAAGATTCACAATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
453317 TT
131 TG
* ** * * * *
453319 CTCCTCTACTGCTTAATGTGACAGAATCTGTAATTTTAAACCTACTCCACTACTACTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
453384 TAGGACAAATGGCTTAAATCTGCCTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
453449 TG
131 TG
* * * *
453451 CTCCACTGCTGTTTAGGGTGACTGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
453516 TAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAGGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
453581 TA
131 TG
*
453583 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * *
453648 TAGGACGAATGGCTGAAATCTGCTTCTCCATTGTATTGGGAAGATAAGAGTCACTATCTTCCATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
453713 TG
131 TG
* * * *
453715 CTCCACTATTACGTAGGGTGACAGAATCTGCAATCGTCAACCTACTCCACTACTGCTT-GGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
453779 TAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAATATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
453844 TG
131 TG
* * * * * *
453846 CTCCTCTACCGCTTAAGGTGAAAGAATCTGCAATTTTCAACCTACTCTACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
*
453911 TAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
453976 TG
131 TG
* * *
453978 CAT-CACTACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTGCTGCTTAGGGTG
1 C-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
454042 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
454107 C-G
130 CTG
* * * *
454109 CTCCACTACTGCTTAGGGTGACAGAACCTGCAATCTTTAACCTACTCCAGTACTGGTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
*
454174 TAGCACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
454239 TG
131 TG
* * * *
454241 CAT-CACTACTGGTTAGAGTGACAGAATCTGTAATCTTCAACCGACTCCACTACTGCTTAGGGTG
1 C-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
*
454305 ATAGGACTATTGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
454370 CTG
130 CTG
* * * *
454373 CTCCACTACTGCTTAGGGTGACAGAACCTGCAATCTTTAACCTACTCCAGTACTGGTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * ** * *
454438 TAGCACTAATGGCTTAAATCTGCTTCTCCACTGTATGGGGAAGATAAGATTCATTATATTCGATT
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
454503 TG
131 TG
*
454505 CTCCACTACTGTTTAGGG
1 CTCCACTACTGCTTAGGG
454523 AAGATGAGAT
Statistics
Matches: 9621, Mismatches: 1358, Indels: 926
0.81 0.11 0.08
Matches are distributed among these distances:
116 5 0.00
117 79 0.01
118 4 0.00
119 15 0.00
120 14 0.00
121 176 0.02
122 58 0.01
123 8 0.00
124 15 0.00
125 2 0.00
126 7 0.00
127 8 0.00
128 6 0.00
129 79 0.01
130 687 0.07
131 1079 0.11
132 6915 0.72
133 225 0.02
134 66 0.01
135 58 0.01
136 102 0.01
137 12 0.00
139 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
TG
Found at i:445505 original size:44 final size:44
Alignment explanation
Indices: 445451--445637 Score: 109
Period size: 44 Copynumber: 4.2 Consensus size: 44
445441 ACCGCTGCAT
*
445451 TACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC
1 TACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC
* * * * *
445495 TACTGGTTAGGGTAATAGGA-CT--AATGGCTTAAATCTGCTTCTCCAC
1 TACTGGTTAGGGTGACAGAATCTGCAAT--CTTCAA-C--CTACTCCAC
* * * * * * * *
445541 TA-T-ATT-GGGAAGATAAGATTC-ACAATCTTCAATCTGCTTCAC
1 TACTGGTTAGGG-TGA-CAGAATCTGCAATCTTCAACCTACTCCAC
* *
445583 TACTGGTTAGGGTGACAGAATCTGTAATCTTCAACCGACTCCAC
1 TACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC
*
445627 TACTGTTTAGG
1 TACTGGTTAGG
445638 ATGATAGGAC
Statistics
Matches: 102, Mismatches: 27, Indels: 28
0.65 0.17 0.18
Matches are distributed among these distances:
41 3 0.03
42 9 0.09
43 16 0.16
44 49 0.48
45 11 0.11
46 11 0.11
47 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
TACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC
Found at i:446105 original size:88 final size:88
Alignment explanation
Indices: 446003--446175 Score: 274
Period size: 88 Copynumber: 2.0 Consensus size: 88
445993 ACAGAATCTG
* ** * *
446003 CAATCTTCAGCCTACTCCACTGCTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACCACTGCTGAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
*
446068 CTGTATTGGGACGATAAGATTCA
66 CTGTATTGGGAAGATAAGATTCA
* *
446091 CAATCTTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTTCTTCTCCA
1 CAATCTTCAACCTACTCCACCACTGCTGAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
446156 CTGTATTGGGAAGATAAGAT
66 CTGTATTGGGAAGATAAGAT
446176 GCATCATATT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 77 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (88 bp):
CAATCTTCAACCTACTCCACCACTGCTGAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
CTGTATTGGGAAGATAAGATTCA
Found at i:446154 original size:352 final size:351
Alignment explanation
Indices: 445739--446833 Score: 1236
Period size: 352 Copynumber: 3.1 Consensus size: 351
445729 ACAGAATCTG
* *
445739 CAATCTTCAACCTACTCAACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAT-TTGCTTCTCC
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGAACTAATGGCTTAAATCTT-CTTCTCC
*
445803 ACTGTATTGGGAAGATAAGAATCATCATATTCGATCTGC-CTCACTACTGTTTAGGGTGACAGAA
65 ACTGTATTGGGAAGATAAGAATCATCATATTCGATCTGCTC-CACTACTGCTTAGGGTGACAGAA
* *
445867 TCTGCAATCCTGAACCAACTCCACT-GTGGCTTAGGGAT-ATAGGACTAATGGCTTAAATCTGCT
129 TCTGCAATCCTGAACCTACTCCACTACT-GCTTAGGG-TGATAGGACTAATGGCTTAAATCTGCT
*
445930 TTTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGAC
192 TCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGAC
* * *
445995 AGAATCTGCAATCTTCAGCCTACTCCACTGCTGCTGAGGGTGATAGGACTAATGGCTTAAATCTG
257 AGAATCTG-AATCTTAAACCTACTCCACTGCTGCTGAGGGTGATAGGACTAATGGCTTAAATCTA
*
446060 CTTCTCCACTGTATTGGGACGATAAGATTCA
321 CTTCTCCACTGTATTGGGAAGATAAGATTCA
* *
446091 CAATCTTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTTCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGAACTAATGGCTTAAATCTTCTTCTCCA
*
446156 CTGTATTGGGAAGATAAG-ATGCATCATATTCGATCTGCTCCACTACTACTTAGGGTGACAGAAT
66 CTGTATTGGGAAGATAAGAAT-CATCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAAT
446220 CTGCAATCTTCTG--CCTACTCCACTACTG-TTGAGGGTGATAGGACTAATGGCTTAAATCTGCT
130 CTGCAATC--CTGAACCTACTCCACTACTGCTT-AGGGTGATAGGACTAATGGCTTAAATCTGCT
** * * * * * *
446282 TCTCCACTGTATTGGGACTATAAGATTCACAATCTTCAACCTACTCCACCACTGCTTAGGGTGAT
192 TCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGAC
* * ** *** * * * *** **
446347 AGAA-C-AAATGGCTTAAATCTGCTTCTCCACTG-TATTG-GGAAAATAAGATTCATCATATTCG
257 AGAATCTGAAT--CTTAAA-C--CTACTCCACTGCTGCTGAGGGTGATAGGACTAAT-GGCTTAA
** * * * * *
446408 ATCTACACCACTACTGT-TTAGGG-TGACAA-AATCTA
316 ATCTACTTCTCCACTGTATT-GGGAAGATAAGATTC-A
* * * * * * *
446443 TAATATTTAACCTACTCCACTACTGCTCAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGAACTAATGGCTTAAATCTTCTTCTCCA
* * * * *
446508 CTGTATTTGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATC
66 CTGTATTGGGAAGATAAGAATCATCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
* * *
446573 TGCAA-CCTTCAACCTACTCTACTACTGCTTAGGGTGATAGGATTAATGGCTTAAATCTGCTTCT
131 TGCAATCC-TGAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCT
* * *
446637 CCACTGTATTGGGCAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGGTTAGGGTTACAG
195 CCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAG
* * * * * *
446701 AATCTGATATCTTGAACCGACTCCACTACTGCTTAGGGTGATAGGACTAGTGGCTTAAATCTCCT
259 AATCTGA-ATCTTAAACCTACTCCACTGCTGCTGAGGGTGATAGGACTAATGGCTTAAATCTACT
446766 TCTCCACTGTATTGGGAAGATAAGATTCA
323 TCTCCACTGTATTGGGAAGATAAGATTCA
* * * * *
446795 CCATCTTCGATC-GCTCCACTACTGCTTAGGGTGACAGAA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGAA
446834 TCTGCAATCT
Statistics
Matches: 603, Mismatches: 110, Indels: 61
0.78 0.14 0.08
Matches are distributed among these distances:
349 4 0.01
350 9 0.01
351 55 0.09
352 482 0.80
353 37 0.06
354 14 0.02
355 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (351 bp):
CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGAACTAATGGCTTAAATCTTCTTCTCCA
CTGTATTGGGAAGATAAGAATCATCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
TGCAATCCTGAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTC
CACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAA
TCTGAATCTTAAACCTACTCCACTGCTGCTGAGGGTGATAGGACTAATGGCTTAAATCTACTTCT
CCACTGTATTGGGAAGATAAGATTCA
Found at i:446159 original size:220 final size:220
Alignment explanation
Indices: 445910--446570 Score: 1034
Period size: 220 Copynumber: 3.0 Consensus size: 220
445900 GGGATATAGG
* * *
445910 ACTAATGGCTTAAATCTGCTTTTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
1 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCT
*
445975 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTGCTGCTGAGGGTGATA
66 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTACTGCTGAGGGTGATA
446040 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACGATAAGATTCACAATCTTCAACCTA
131 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACGATAAGATTCACAATCTTCAACCTA
446105 CTCCACCACTGCTTAGGGTGAAAGA
196 CTCCACCACTGCTTAGGGTGAAAGA
* *
446130 ACTAATGGCTTAAATCTTCTTCTCCACTGTATTGGGAAGATAAGATGCATCATATTCGATCTGCT
1 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCT
* * *
446195 CCACTACTACTTAGGGTGACAGAATCTGCAATCTTCTGCCTACTCCACTACTGTTGAGGGTGATA
66 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTACTGCTGAGGGTGATA
*
446260 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACTATAAGATTCACAATCTTCAACCTA
131 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACGATAAGATTCACAATCTTCAACCTA
*
446325 CTCCACCACTGCTTAGGGTGATAGA
196 CTCCACCACTGCTTAGGGTGAAAGA
* * * *
446350 ACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTACA
1 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCT
* * ** * * * * *
446415 CCACTACTGTTTAGGGTGACAAAATCTATAATATTTAACCTACTCCACTACTGCTCAGGGAGATA
66 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTACTGCTGAGGGTGATA
* * * * * *
446480 GGACTAATGGCTTAAATCTACTTCTCCACTGTATTTGGAAGATAAGATTCACCATCTTCGATCTA
131 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACGATAAGATTCACAATCTTCAACCTA
* *
446545 CTCCACTACTGCTTAGGGTGACAGA
196 CTCCACCACTGCTTAGGGTGAAAGA
446570 A
1 A
446571 TCTGCAACCT
Statistics
Matches: 403, Mismatches: 38, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
220 403 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (220 bp):
ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCT
CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTACTGCTGAGGGTGATA
GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACGATAAGATTCACAATCTTCAACCTA
CTCCACCACTGCTTAGGGTGAAAGA
Found at i:446197 original size:88 final size:88
Alignment explanation
Indices: 446003--446218 Score: 263
Period size: 88 Copynumber: 2.5 Consensus size: 88
445993 ACAGAATCTG
* * ** * * *
446003 CAATCTTCAGCCTACTCCACTGCTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
1 CAATATTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
* *
446068 CTGTATTGGGACGATAAGATTCA
66 CTGTATTGGGAAGATAAGATGCA
* *
446091 CAATCTTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTTCTTCTCCA
1 CAATATTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
446156 CTGTATTGGGAAGATAAGATGCA
66 CTGTATTGGGAAGATAAGATGCA
* * * * * *
446179 TC-ATATTCGATCTGCTCCACTACTACTTAGGGTGACAGAA
1 -CAATATTCAACCTACTCCACCACTGCTTAGGGTGAAAGAA
446219 TCTGCAATCT
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
88 110 0.99
89 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (88 bp):
CAATATTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
CTGTATTGGGAAGATAAGATGCA
Found at i:446317 original size:88 final size:87
Alignment explanation
Indices: 446223--446433 Score: 273
Period size: 88 Copynumber: 2.4 Consensus size: 87
446213 ACAGAATCTG
* *
446223 CAATCTTCTGCCTACTCCACTACTGTTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTC-GCCTACTCCACTACTGTT-AGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCA
**
446288 CTGTATTGGGACTATAAGATTCA-
64 CTGTATTGGGAAAATAAGATTCAT
* *
446311 CAATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTC-GCCTACTCCACTACTG-TTAGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCA
446376 CTGTATTGGGAAAATAAGATTCAT
64 CTGTATTGGGAAAATAAGATTCAT
* * *
446400 C-ATATTCGATCTACACCACTACTGTTTAGGGTGA
1 CAATCTTCG-CCTACTCCACTACTG-TTAGGGTGA
446434 CAAAATCTAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
88 104 0.97
89 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (87 bp):
CAATCTTCGCCTACTCCACTACTGTTAGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCACT
GTATTGGGAAAATAAGATTCAT
Found at i:447332 original size:517 final size:517
Alignment explanation
Indices: 446335--447368 Score: 1493
Period size: 517 Copynumber: 2.0 Consensus size: 517
446325 CTCCACCACT
*
446335 GCTTAGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCAT
1 GCTTAGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCAC
* * *
446400 CATATTCGATCTACACCACTACTGTTTAGGGTGACAAAATCTATAATATTTAACCTACTCCACTA
66 CATATTCGATCTACACCACTACTGATTAGGGTGACAAAATCTACAATATTCAACCTACTCCACTA
* *
446465 CTGCTCAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTTGGAAGATAAGATTC
131 CTGCTCAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTA
*
446530 ACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAACCTTCAACCTACTCTAC
196 ACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAACCTTCAACCTACTCCAC
* * *
446595 TACTGCTTAGGGTGATAGGATTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGCAGATAAGAT
261 TACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
* * * * *
446660 TCACCATCTTCGATCTGCATCACTACTGGTTAGGGTTACAGAATCTGATATCTTGAACCGACTCC
326 TCACCATATACGATCTGCATCACTACTGGTTAGGGTGACAAAATCTGATATCTTCAACCGACTCC
* *
446725 ACTACTGCTTAGGGTGATAGGACTAGTGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGATAAG
391 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTAGGAAGATAAG
* **
446790 ATTCACCATCTTCGATCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
456 ATTCACCATCTTCGATCGCTCCACTAATGCTTAGGGTGACAGAATCTAAAATCTTCAACCTA
* * * * *
446852 GCTTAGGGTGATAGGACTAATGGTTTAAATCTGCTTCTCCACTGTATTGTGAAGATAAGATTCAC
1 GCTTAGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCAC
* * * * * * *
446917 CATCTTCGATCTGCATCACTACTGATTAGTGTGACAGAATCTGCAATCTTCAACCTACTCCACTA
66 CATATTCGATCTACACCACTACTGATTAGGGTGACAAAATCTACAATATTCAACCTACTCCACTA
* * * *
446982 CTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGATGATAAGATTA
131 CTGCTCAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTA
* * * * *
447047 ACCATCTTCGATCTGCTCCACTATTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTATTCCAG
196 ACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAACCTTCAACCTACTCCAC
* *
447112 TACTGCTTTGGGTGATAGGACTAATTACTTAAATCTGCTT-TACCACTGTATTGGGAAGATAAGA
261 TACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCT-CCACTGTATTGGGAAGATAAGA
** * * *
447176 TTCATTATATACGATCTGC-TCCACTACTGTTTAGGGTGACAAAATCTG-TAATCTTCAATCTAC
325 TTCACCATATACGATCTGCAT-CACTACTGGTTAGGGTGACAAAATCTGAT-ATCTTCAACCGAC
* * ** * * *
447239 TCCACTACTGCTTAGGG-GGTAGGTCTAATGGCTTAAATCTGTTTTTCTACTTTATTAGGAAGAT
388 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTAGGAAGAT
447303 AAGATTCACCATCTTCGATCTAG-TCCACTAATGCTTAGGGTGACAGAATCTAAAATCTTCAACC
453 AAGATTCACCATCTTCGATC--GCTCCACTAATGCTTAGGGTGACAGAATCTAAAATCTTCAACC
447367 TA
516 TA
447369 CTACACTACT
Statistics
Matches: 457, Mismatches: 55, Indels: 10
0.88 0.11 0.02
Matches are distributed among these distances:
516 61 0.13
517 395 0.86
518 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (517 bp):
GCTTAGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCAC
CATATTCGATCTACACCACTACTGATTAGGGTGACAAAATCTACAATATTCAACCTACTCCACTA
CTGCTCAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTA
ACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAACCTTCAACCTACTCCAC
TACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
TCACCATATACGATCTGCATCACTACTGGTTAGGGTGACAAAATCTGATATCTTCAACCGACTCC
ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTAGGAAGATAAG
ATTCACCATCTTCGATCGCTCCACTAATGCTTAGGGTGACAGAATCTAAAATCTTCAACCTA
Found at i:447420 original size:44 final size:44
Alignment explanation
Indices: 447326--447429 Score: 138
Period size: 44 Copynumber: 2.4 Consensus size: 44
447316 TTCGATCTAG
* *
447326 TCCACTAATGCTTAGGGTGACAGAATCTAAAATCTTCAACCTAC
1 TCCACTACTGCTTAGGGTGACAAAATCTAAAATCTTCAACCTAC
* * * *
447370 TACACTACTGTTTAGGGTGACAAAATCTACAATCTTCAA-TTAAC
1 TCCACTACTGCTTAGGGTGACAAAATCTAAAATCTTCAACCT-AC
447414 TCCACTACTGCTTAGG
1 TCCACTACTGCTTAGG
447430 ATGATAGGAC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 1 0.02
44 50 0.98
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (44 bp):
TCCACTACTGCTTAGGGTGACAAAATCTAAAATCTTCAACCTAC
Found at i:447529 original size:176 final size:175
Alignment explanation
Indices: 447197--447552 Score: 468
Period size: 176 Copynumber: 2.0 Consensus size: 175
447187 CGATCTGCTC
** *
447197 CACTACTGTTTAGGGTGACAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAGGGGGTAGG
1 CACTACTGTTTAGGGTGACAAAATCTACAATCTTCAATCTACTCCACTACTGCTTAGGGGATAGG
* * * * * *
447262 TCTAATGGCTTAAATCTGTTTTTCTACTTTATTAGGAAGATAAGATTCACCATCTTCGATCTAGT
66 ACTAATGCCTTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATTCACCATCTTCGATCTAGT
* *
447327 CCACTAATGCTTAGGGTGACAGAATCTAAAATCTTCAACCTACTA
131 CCACTAATGCTTAGGGTGACAGAATCTAAAATCTGCAACCGACTA
*
447372 CACTACTGTTTAGGGTGACAAAATCTACAATCTTCAAT-TAACTCCACTACTGCTTAGGATGATA
1 CACTACTGTTTAGGGTGACAAAATCTACAATCTTCAATCT-ACTCCACTACTGCTTAGG-GGATA
* *
447436 GGACTAATGCCTTAAATCTGCTTCTCCA-TGGTATTGGGAAGATCAGATTCACCATCTTCGATCT
64 GGACTAATGCCTTAAATCTGCTTCTCCACT-GTATTAGGAAGATAAGATTCACCATCTTCGATCT
* * ** *
447500 -G-CATCACTACTGTTTAGGGTGACAGAATCTGCAATCTGCAACCGACTC
128 AGTC--CACTAATGCTTAGGGTGACAGAATCTAAAATCTGCAACCGACTA
447548 CACTA
1 CACTA
447553 GTTCTTAGGA
Statistics
Matches: 157, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
174 2 0.01
175 56 0.36
176 99 0.63
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (175 bp):
CACTACTGTTTAGGGTGACAAAATCTACAATCTTCAATCTACTCCACTACTGCTTAGGGGATAGG
ACTAATGCCTTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATTCACCATCTTCGATCTAGT
CCACTAATGCTTAGGGTGACAGAATCTAAAATCTGCAACCGACTA
Found at i:449827 original size:44 final size:44
Alignment explanation
Indices: 449748--449844 Score: 122
Period size: 44 Copynumber: 2.2 Consensus size: 44
449738 CTTCAATTTG
* * *
449748 CTCCACTACTACTTAGGGTAACAGAATGTGCAATCTTTAACTGA
1 CTCCACTACTACTTAGGGTAACAGAATCTGCAATCTTCAACCGA
* * **
449792 CTCCACTACTTCTTAGGGTGACAGAATCTTTAATCTTCAACCGA
1 CTCCACTACTACTTAGGGTAACAGAATCTGCAATCTTCAACCGA
*
449836 CTGCACTAC
1 CTCCACTAC
449845 AGCTTTGGGA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (44 bp):
CTCCACTACTACTTAGGGTAACAGAATCTGCAATCTTCAACCGA
Found at i:449830 original size:176 final size:175
Alignment explanation
Indices: 449627--449985 Score: 456
Period size: 176 Copynumber: 2.0 Consensus size: 175
449617 TTCACAACTC
* *
449627 CTTAGGGTAACAGAATCTGCAATCTTCAACCTACT-CAACTACTA-CTTAGGGTGATAGGACTAA
1 CTTAGGGTAACAGAATCTGCAATCTTCAACCGACTGC-ACTAC-AGCTTAGGGAGATAGGACTAA
* * * * ** *
449690 TGGCTTAAATCTGCCCCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCAATTTGCTCCACT
64 TGGCTTAAATCTGCCCCTCCACTATATTGAGAAGAGAAGATTCACCATATTCAATCCGCTCCACA
* *
449755 AC-TACTTAGGGTAACAGAATGTGCAATCTTTAA-CTGACTCCACTACTT
129 ACGT-CTTAGGGTAACAGAATCTGCAATCTTTAACCT-ACTCCACT-CTG
* ** * *
449803 CTTAGGGTGACAGAATCTTTAATCTTCAACCGACTGCACTACAGCTTTGGGAGATTGGACTAATG
1 CTTAGGGTAACAGAATCTGCAATCTTCAACCGACTGCACTACAGCTTAGGGAGATAGGACTAATG
** * *
449868 GCTTAAATCTGCTTCTCCACTATCTTGAGAAGAGAAGATTCACCATATTCGATCCGCTCCACAAC
66 GCTTAAATCTGCCCCTCCACTATATTGAGAAGAGAAGATTCACCATATTCAATCCGCTCCACAAC
*
449933 GTCTTAGGGTAACAGAATCTGCAATCTTTAACCTACTCTACTCTG
131 GTCTTAGGGTAACAGAATCTGCAATCTTTAACCTACTCCACTCTG
449978 CTTAGGGT
1 CTTAGGGT
449986 CATAGGACTA
Statistics
Matches: 158, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
175 11 0.07
176 143 0.91
177 4 0.03
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (175 bp):
CTTAGGGTAACAGAATCTGCAATCTTCAACCGACTGCACTACAGCTTAGGGAGATAGGACTAATG
GCTTAAATCTGCCCCTCCACTATATTGAGAAGAGAAGATTCACCATATTCAATCCGCTCCACAAC
GTCTTAGGGTAACAGAATCTGCAATCTTTAACCTACTCCACTCTG
Found at i:452604 original size:177 final size:176
Alignment explanation
Indices: 452416--453040 Score: 758
Period size: 177 Copynumber: 3.6 Consensus size: 176
452406 TTACTATTAC
* *
452416 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACGAATGG
1 TTAGAGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTA-GGAGATAGGACGAATGG
452481 CTTAAATCTGCTTCTCCACTGTATGGGGAAGATAAGATTCATTATATTCGATTTGCTCCACTACT
65 CTTAAATCTGCTTCTCCACTGTATGGGGAAGATAAGATTCATTATATTCGATTTGCTCCACTACT
452546 GTTTAGGGAAGATGAGATTCACGATCTTCGATCTACATCACTACTGG
130 GTTTAGGGAAGATGAGATTCACGATCTTCGATCTACATCACTACTGG
* * *
452593 TTAGAGTGACAGAATCTGTAATCTTCAACCGACTCCACTACTGCTTACGATGATAGGACTAATGG
1 TTAGAGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGA-GATAGGACGAATGG
452658 CTTAAATCTGCTTCTCCACTGTATGGGGAAGATAAGATTCATTATATTCGATTTGCTCCACTACT
65 CTTAAATCTGCTTCTCCACTGTATGGGGAAGATAAGATTCATTATATTCGATTTGCTCCACTACT
452723 GTTTAGGGAAGATGAGATTCACGATCTTCGATCTACATCACTACTGG
130 GTTTAGGGAAGATGAGATTCACGATCTTCGATCTACATCACTACTGG
* * *
452770 TTAGAGTGACAGAATCTGTAATCTTCAACCGACTCCACTACTGCTT---A-CT-TGA--AAT--C
1 TTAGAGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGAGATAGGACGAATGGC
* * * * * * * * * *** ** * * * *
452826 TTCAA-CTGACTCCACTACTGCT-T-AGGATGATAGGACT-AATGCCTTAAATCTGCTTCTCCA-
66 TTAAATCTG-CTTCTCCACTG-TATGGGGAAGATAAGATTCATTATATTCGATTTGCTCCACTAC
* * * * **
452886 TGGTATT-GGGAAGATCAGATTCACCATCTTCGATCTGCACCACTACTTC
129 T-GT-TTAGGGAAGATGAGATTCACGATCTTCGATCTACATCACTACTGG
* *
452935 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACGAATGG
1 TTAGAGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTA-GGAGATAGGACGAATGG
* *
453000 CTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCA
65 CTTAAATCTGCTTCTCCACTGTATGGGGAAGATAAGATTCA
453041 CCAGTTTCGA
Statistics
Matches: 384, Mismatches: 45, Indels: 38
0.82 0.10 0.08
Matches are distributed among these distances:
164 1 0.00
165 94 0.24
166 15 0.04
167 14 0.04
168 1 0.00
169 4 0.01
170 1 0.00
171 4 0.01
172 1 0.00
173 3 0.01
174 2 0.01
175 14 0.04
176 14 0.04
177 216 0.56
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (176 bp):
TTAGAGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGAGATAGGACGAATGGC
TTAAATCTGCTTCTCCACTGTATGGGGAAGATAAGATTCATTATATTCGATTTGCTCCACTACTG
TTTAGGGAAGATGAGATTCACGATCTTCGATCTACATCACTACTGG
Found at i:453514 original size:44 final size:42
Alignment explanation
Indices: 453451--453644 Score: 117
Period size: 44 Copynumber: 4.4 Consensus size: 42
453441 ATTCGATCTG
* * *
453451 CTCCACTGCTGTTTAGGGTGACTGAATCTGTAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGA-TGAATCT-CAATCTTCAACCTA
* * * *
453495 CTCCACTACTGCTTAGGGTGATAGGA-CT-AATGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGTGAT-GAATCTCAAT--CTTCAACCTA
* * * * * * *
453538 CTTCTCTACTG-TATTGGGAGGATAAGAT-TCACCATCTTCGATCTA
1 CTCCACTACTGCT-TAGGG-TGATGA-ATCTCA--ATCTTCAACCTA
*
453583 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGA-TGAATCT-CAATCTTCAACCTA
453627 CTCCACTACTGCTTAGGG
1 CTCCACTACTGCTTAGGG
453645 AGATAGGACG
Statistics
Matches: 113, Mismatches: 23, Indels: 28
0.69 0.14 0.17
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 23 0.20
44 58 0.51
45 23 0.20
46 3 0.03
47 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.31
Consensus pattern (42 bp):
CTCCACTACTGCTTAGGGTGATGAATCTCAATCTTCAACCTA
Found at i:454535 original size:177 final size:176
Alignment explanation
Indices: 454335--454698 Score: 518
Period size: 177 Copynumber: 2.1 Consensus size: 176
454325 CTGCTTCTCC
* *
454335 ACTGTATT-GGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGA
1 ACTGT-TTAGGGAAGATAAGATTCACCATCTTCGATCTACAT-CACTACTGCTTAGAGTGACAGA
* * * * * *
454398 ACCTGCAATCTTTAACCTACTCCAGTACTGGTTAGGGTGATAGCACTAATGGCTTAAATCTGCTT
64 ACCTGCAATCTTCAACCGACTCCACTACTGCTTACGATGATAGCACTAATGGCTTAAATCTGCTT
* * *
454463 CTCCACTGTATGGGGAAGATAAGATTCATTATATTCGATTTGC-TCCACT
129 CTCCACTGTAT-GGGAAAATAAGATTCATCATATTCGATCTGCAT-CACT
* * * *
454512 ACTGTTTAGGGAAGATGAGATTCACGATCTTCGATCTACATCACTACTGGTTAGAGTGACAGAAT
1 ACTGTTTAGGGAAGATAAGATTCACCATCTTCGATCTACATCACTACTGCTTAGAGTGACAGAAC
* *
454577 CTGTAATCTTCAACCGACTCCACTACTGCTTACGATGATAGGACTAATGGCTTAAATCTGCTTCT
66 CTGCAATCTTCAACCGACTCCACTACTGCTTACGATGATAGCACTAATGGCTTAAATCTGCTTCT
454642 CCACTGTATGGGAAAATAAGATTCATCATATTCGATCTGCATCACT
131 CCACTGTATGGGAAAATAAGATTCATCATATTCGATCTGCATCACT
454688 ACTGTTTAGGG
1 ACTGTTTAGGG
454699 TGACAGAATC
Statistics
Matches: 167, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
176 45 0.27
177 121 0.72
178 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (176 bp):
ACTGTTTAGGGAAGATAAGATTCACCATCTTCGATCTACATCACTACTGCTTAGAGTGACAGAAC
CTGCAATCTTCAACCGACTCCACTACTGCTTACGATGATAGCACTAATGGCTTAAATCTGCTTCT
CCACTGTATGGGAAAATAAGATTCATCATATTCGATCTGCATCACT
Found at i:454864 original size:132 final size:132
Alignment explanation
Indices: 454512--455534 Score: 1331
Period size: 132 Copynumber: 7.8 Consensus size: 132
454502 TTGCTCCACT
* * * * * *
454512 ACTGT-TTAGGGAAGATGAGATTCACGATCTTCGATCTACAT-CACTACTGGTTAGAGTGACAGA
1 ACTGTATT-GGGAAGATAAGATTCACCATATTCGATCT-CCTCCACTACTGTTTAGGGTGACAGA
* * *
454575 ATCTGTAATCTTCAACCGACTCCACTACTGCTTA-CGATGATAGGACTAATGGCTTAAATCTGCT
64 ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGA-GATAGGACTAATGGCTTAAATCTGCT
454639 TCTCC
128 TCTCC
* * *
454644 ACTGTA-TGGGAAAATAAGATTCATCATATTCGATCTGCAT-CACTACTGTTTAGGGTGACAGAA
1 ACTGTATTGGGAAGATAAGATTCACCATATTCGATCT-CCTCCACTACTGTTTAGGGTGACAGAA
* * *
454707 TCTGCAATCTCCAACCAACTGCACTA-TGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTT
65 TCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTT
454771 CTCC
129 CTCC
* * ** *
454775 ACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTACTTAGGGTGACAGATT
1 ACTGTATTGGGAAGATAAGATTCACCATATTCGATCTCCTCCACTACTGTTTAGGGTGACAGAAT
* ** *
454840 CTGCAATCTTTAACCTACTCCACTACTGCTTAGGGTTATAGGACTAATGGCTTAAATCTGTTTCT
66 CTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCT
454905 CC
131 CC
* * * **
454907 ACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTGACTACTGTTTAGGGTGACAGAAT
1 ACTGTATTGGGAAGATAAGATTCACCATATTCGATCTCCTCCACTACTGTTTAGGGTGACAGAAT
* * * *
454972 TTGTAATCTTTAACCAACTCCACTA-TGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
66 CTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
455036 TCC
130 TCC
* * * ** *
455039 ACTGTATAGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTACTCAGGGTGACAGAAT
1 ACTGTATTGGGAAGATAAGATTCACCATATTCGATCTCCTCCACTACTGTTTAGGGTGACAGAAT
* * * *
455104 CTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGATTAATTGCTTAAATCCGCTTCT
66 CTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCT
455169 CC
131 CC
* * * * *
455171 ACTGTATTAGGAAGATAAGATTAACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAAT
1 ACTGTATTGGGAAGATAAGATTCACCATATTCGATCTCCTCCACTACTGTTTAGGGTGACAGAAT
* * * *
455236 CTGCAATCTTCAACCTACTCCAGTACTGCTTAGGGTGATAGGACTAATGGCTTAAATTTGCTTTT
66 CTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCT
455301 CC
131 CC
* * * * *
455303 ATTGTATTGGGAAGATTAGATTCATCATATTCGATCTGCTCCACTACTGTTTAAGGTGACAGAAT
1 ACTGTATTGGGAAGATAAGATTCACCATATTCGATCTCCTCCACTACTGTTTAGGGTGACAGAAT
* * * * * *
455368 CTGTAATCTTTAACCTACTACACTACTACTTAGGGAGATAGGTCTAATGGCTTAAATCTGTTTCT
66 CTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCT
*
455433 CT
131 CC
* *
455435 ACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAAT
1 ACTGTATTGGGAAGATAAGATTCACCATATTCGATCTCCTCCACTACTGTTTAGGGTGACAGAAT
* *
455500 CTGTAATCTTCAACCTACTCTACTACTGCTTAGGG
66 CTGCAATCTTCAACCTACTCCACTACTGCTTAGGG
455535 TGACAGAATA
Statistics
Matches: 781, Mismatches: 102, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
130 1 0.00
131 115 0.15
132 663 0.85
133 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (132 bp):
ACTGTATTGGGAAGATAAGATTCACCATATTCGATCTCCTCCACTACTGTTTAGGGTGACAGAAT
CTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCT
CC
Found at i:455527 original size:44 final size:44
Alignment explanation
Indices: 455473--455581 Score: 155
Period size: 44 Copynumber: 2.5 Consensus size: 44
455463 ATTCGATCTG
* * *
455473 CTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATATGCAATCTTCAACCTA
* *
455517 CTCTACTACTGCTTAGGGTGACAGAATATGCAATCTTTAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATATGCAATCTTCAACCTA
* *
455561 CTCCACTACTTCTTAGAGTGA
1 CTCCACTACTGCTTAGGGTGA
455582 TAGGACTAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGTGACAGAATATGCAATCTTCAACCTA
Found at i:455641 original size:132 final size:132
Alignment explanation
Indices: 455521--459667 Score: 5574
Period size: 132 Copynumber: 31.5 Consensus size: 132
455511 AACCTACTCT
* * * *
455521 ACTACTGCTTAGGGTGACAGAATATGCAATCTTTAACCTACTCCACTACTTCTTAGAGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * *
455586 ACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTAACCATCTTCGATCTACT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
455651 CC
131 CC
* * * *
455653 ACTACTGCTTAGGGTGACAAAATCTTCAATCTTCAACCTATTCGACTACTGCTTAGGGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* ** * * * *
455718 ACTAATGGCATAAATCTGCTTCTTAAGTGTACTGGGAACATAAGATTCACAATCTTCGATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
455783 CC
131 CC
*
455785 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
*
455850 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCCATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
455915 CC
131 CC
* * * *
455917 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACCGACTCCACTACTTCTTAGGGTGGTAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* *
455982 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTTCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
456047 CC
131 CC
* * * * * * * *
456049 ACTATTGCTTAGGGTGGCAGAATCTGCAAACTTCGACCTACTCGACTACTTCCTAGGGTGGTAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * * * *
456114 ACTAATGGCTTAAATCTGCTTCTCCACTCTATTGGGAAGATATGATTAATCATATTCGATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
456179 CC
131 CC
* * * * * * *
456181 ACTACTGTTTAGGGTGACAAAATCTGCAATCTTTAACCTACCCCACCACTGCTCAGGGAGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * * * * * *
456246 ACTAATGCCTTAAATCTACTTCTCCACTGTATTTGGAAGATAAGATTCACAATCCTCGATCTACG
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
456311 CC
131 CC
* * * * *
456313 AGTACTGCTTAGGGTGACAAAATCTGCAATCTTCAACTTACTCCACTACAGCTTAGGGAGACT-G
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA-TAG
* * *
456377 GACTAATGGCTTAAATCTGCTTCTCCACTATCTTGAGAAGATAAGATTCACCATCTTCGAT-TCG
65 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCT-G
456441 CTCC
129 CTCC
* * * * *
456445 ACAACTTCTTAGGGTAACAGAATCTGCAATCTTCAACCTACTCCACTTCTTCTTAGGGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * *
456510 ACTAATGGCTTAAATCTGCTTCTCCACTATCTTGAGAAGATAAGATTCACCATCTTCGAT-TCGC
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCT-GC
456574 TCC
130 TCC
* * * * * *
456577 ACAACTTCTTAGGGTAACAGAATCTGCCATCTTCAACCTACTCCACTTCTTCTTAGGGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * *
456642 ACTAGTGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
456707 CC
131 CC
* * * * *
456709 ACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCATTATTGCTTAGGATGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * *
456774 ACTAATGGCTTAAATATGCTTCTCCAATGTATTGGGACGATAAGATTCACCATCTTCGA--T-CT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
456836 --
131 CC
* *
456836 ACT-C--CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ATG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-G
* * * * *
456897 GACAAATGGCTTAAATCTGTTTCTTCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGC
65 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
456962 TCC
130 TCC
* * * * *
456965 ACTATTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTGCACTACTGTTTAGGGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * * *
457030 ACTAATGGCTTAAATCTGCTTCTCCTCTATATTAGGAAGATAAGATTAACCATCTTCGATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
457095 CC
131 CC
* * * *
457097 ACTACTACTTAGGGTGACAGAATCTGCAATCTTGAACCGACTCCACTACTTCTTAGGGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* *
457162 ACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
457227 CC
131 CC
* * * *
457229 AAC-ACTGCTTAGGGTGGCAGAATCTGTAATCTTCAACCTACTCCACCACTGCTTAGGATGATAG
1 -ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* *
457293 GACTAATGGCTTAAATCTGCTACTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTAC
65 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
457358 TCC
130 TCC
* * * *
457361 AAC-ACTGCTTAGGGTGGCAGAATCTGTAATCTTCAACCTACTCCACCACTGCTTAGGATGATAG
1 -ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * * *
457425 GACTAATGGCTTAAATATGCTTCTCTAATGTATTCGGAAGATAAGATTCACCATCTTCGATCTCC
65 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
*
457490 TTC
130 TCC
* * *
457493 ACTACTCCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTATGGTGA-ATG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-G
* * * *
457557 GACTAATGGCTTAAATCTGTTTCTTCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGC
65 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
457622 TCC
130 TCC
* * * * *
457625 ACTAATGTTTACGGTGACAGAATCTGTAATCTTCAACCTACTACACTACTGCTTAGGGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * * *
457690 ACTAATGGCTTAAATCTGCTTCTCCTCTGTATTAGGAAGATAAGATTAACCACCTTCGATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
457755 CC
131 CC
* * *
457757 ACTACTACTTAGGGTGACAGAATCTGCAATCTTGAA-CTGACTCCACTACTTCTTAGGGTGATAG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTGATAG
* * *
457821 GACTAAAGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTAC
65 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
457886 TCC
130 TCC
* * *
457889 ACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACCACTGCTTAGGATGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* *
457954 ACT--TGGCTTAAATCTGCTTCTCCACTGTACTGGGAAGATAAGATTCACCATCTTCGATCTACT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
458017 CC
131 CC
* *
458019 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACTA-TGGCTTAGGGAGATAG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAG
* *
458083 GACTATTGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTCC
65 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
458148 TCC
130 TCC
* * * ** * * *
458151 ACTATTACATAGGGTGACAGAATCTATAATCTTTAACCTACTCCACTACTCCTTAGGGAGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * **
458216 TCTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATT-ACCATCTTCGATCAACT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
458280 CC
131 CC
* * *
458282 ACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTATTCGACTACTGCTTAGGGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* **
458347 ACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATT-ACCATCTTCGATCAACT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
458411 CC
131 CC
* *
458413 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACTA-TGGCTTAGGGAGATAG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAG
* * * * *** * *
458477 GAGTATTGGCTTAAATTTGCTTCTCCATTGTATTGGGAAGATAAGATTCTTTATATTCGATCTAC
65 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
*
458542 TCA
130 TCC
* * * * * *
458545 ACTACTGTTTAAGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACGGCTTTGGGAGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
** * * ** * *
458610 TTTAATGGCTTAAATCTGATTCTCTACTGTAACGGGTAGATAAGATTCACCATCTTCGATCTACT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
458675 CC
131 CC
* * * * * *
458677 ACTACTGCTTAGGGTGACAGAATCTGAAATCCTCAACCTACTCCAGTACTGCTTATGGAGATTGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * * * * * * * * *
458742 ACTAATGGCTTACATTTACTTCTACACTATCTTGAGAAGAGATGATTCACCATCTTCGATCCGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
*
458807 GC
131 CC
458809 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
*
458874 ACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
458939 CC
131 CC
* * * * *
458941 ACTACTGCTTAAGGTGACAAAATTTGCAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * * * *
459006 ACTAATGACTTAACTCTGTTTCTCCACTGTTTTGGGAAGATAAGATTCATCA-CATTCGATCTGC
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC-TTCGATCTGC
459070 TCC
130 TCC
* * * *
459073 ACTACTGTTTAGGGTGAGAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ATG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-G
* * *
459137 GACTAATGGCTTAAATCTGCTTCTCCATTGTATTGGGAAGATAAGATTCATCATATTCGATCTGC
65 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
459202 TCC
130 TCC
* * * *
459205 ACTACTGTTTAGGGTGACAGAATCTGTAATCTTGAACCTACTCCACTACTGTTTAGGGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * *
459270 ACTAATGGCTTAAATCTGCTTCT-CATTTGTATTAGGAAGATAAGATTAACCATCTTCGATCTGC
66 ACTAATGGCTTAAATCTGCTTCTCCA-CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
459334 TCC
130 TCC
* * * * * * *
459337 ACTACTACTTAGGGGGATAGAATCTGCAATCTTAAACCGACTCCACTACTTCTTACGGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * **
459402 ACTAATGGCTTAAATCTACTTCTCCATTGTATTGGGAAGATAAGATTCACCATCTTCGATCTATT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
459467 CC
131 CC
* * * *
459469 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTGCTCTACCACTGCTTAGGATGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
* * * * * *
459534 ACTAATTGCTTAAATATGCTTCTCCTCTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
*
459599 TC
131 CC
* * * * *
459601 ACTACTGTTTAGGGTGAGAGAATCTACAATCTTCAACCAACTCCACTA-TGGCTTAGGGAGATAG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAG
459665 GAC
65 GAC
459668 NNNNNNNNNN
Statistics
Matches: 3539, Mismatches: 442, Indels: 68
0.87 0.11 0.02
Matches are distributed among these distances:
123 1 0.00
124 101 0.03
126 2 0.00
127 5 0.00
129 6 0.00
130 122 0.03
131 250 0.07
132 3040 0.86
133 12 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
CC
Found at i:455646 original size:176 final size:176
Alignment explanation
Indices: 455345--455713 Score: 560
Period size: 176 Copynumber: 2.1 Consensus size: 176
455335 GATCTGCTCC
* * * * *
455345 ACTACTGTTTAAGGTGACAGAATCTGTAATCTTTAACCTACTACACTACTACTTAGGGAGATAGG
1 ACTACTGCTTAGGGTGACAGAATATGCAATCTTTAACCTACTACACTACTACTTAGAGAGATAGG
* * * * *
455410 TCTAATGGCTTAAATCTGTTTCTCTACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCT
66 ACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTAACCATATTCGATCTACT
* * *
455475 CCACTACTGTTTAGGGTGACAGAATCTGT-AATCTTCAACCTACTCT
131 CCACTACTGCTTAGGGTGACAAAATCT-TCAATCTTCAACCTACTCG
* * *
455521 ACTACTGCTTAGGGTGACAGAATATGCAATCTTTAACCTACTCCACTACTTCTTAGAGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATATGCAATCTTTAACCTACTACACTACTACTTAGAGAGATAGG
*
455586 ACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTAACCATCTTCGATCTACT
66 ACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTAACCATATTCGATCTACT
*
455651 CCACTACTGCTTAGGGTGACAAAATCTTCAATCTTCAACCTATTCG
131 CCACTACTGCTTAGGGTGACAAAATCTTCAATCTTCAACCTACTCG
455697 ACTACTGCTTAGGGTGA
1 ACTACTGCTTAGGGTGA
455714 TAGGACTAAT
Statistics
Matches: 174, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
175 1 0.01
176 173 0.99
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (176 bp):
ACTACTGCTTAGGGTGACAGAATATGCAATCTTTAACCTACTACACTACTACTTAGAGAGATAGG
ACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTAACCATATTCGATCTACT
CCACTACTGCTTAGGGTGACAAAATCTTCAATCTTCAACCTACTCG
Found at i:455650 original size:88 final size:88
Alignment explanation
Indices: 455382--455669 Score: 239
Period size: 88 Copynumber: 3.3 Consensus size: 88
455372 AATCTTTAAC
* * * * *
455382 CTACTACACTACTACTTAGGGAGATAGGTCTAATGGCTTAAATCTGTTTCTCTACTGTATTGGGA
1 CTACTCCACTACTTCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGA
* * *
455447 AGATAAGATTCATCATATTCGAT
66 AGATAAGATTAACCATCTTCGAT
* * * * * *
455470 CTGCTCCACTACTGT-TTAGGGTGACAGAATCTGTAAT--CTTCAACCTAC-TCTACTACTGCT-
1 CTACTCCACTACT-TCTTAGGGTGATAGGA-C--TAATGGCTTAAATCTGCTTCT-CTACTG-TA
* * * * * * ** *
455530 TAGGG-TGA-CAGAATATGCAATCTTTAAC
60 TTGGGAAGATAAGATTA-ACCATCTTCGAT
*
455558 CTACTCCACTACTTCTTAGAGTGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGA
1 CTACTCCACTACTTCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGA
455623 AGATAAGATTAACCATCTTCGAT
66 AGATAAGATTAACCATCTTCGAT
*
455646 CTACTCCACTACTGCTTAGGGTGA
1 CTACTCCACTACTTCTTAGGGTGA
455670 CAAAATCTTC
Statistics
Matches: 145, Mismatches: 41, Indels: 28
0.68 0.19 0.13
Matches are distributed among these distances:
85 4 0.03
86 1 0.01
87 24 0.17
88 88 0.61
89 23 0.16
90 1 0.01
91 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (88 bp):
CTACTCCACTACTTCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGA
AGATAAGATTAACCATCTTCGAT
Found at i:455817 original size:44 final size:44
Alignment explanation
Indices: 455767--455976 Score: 144
Period size: 44 Copynumber: 4.8 Consensus size: 44
455757 ATAAGATTCA
*
455767 CAATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
1 CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
* * * * *
455811 CAATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGGA-CT-
1 CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
* * * * * * * * *
455853 -AATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTC-A
1 CAAT--CTTCAATCTGCTCCACTACTGCT-TAGGG-TGA-CAGAATCTG
* *
455899 CCATCTTCCATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
1 CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
* * *
455943 CAATCTTTAA-CCGACTCCACTACTTCTTAGGGTG
1 CAATCTTCAATCTG-CTCCACTACTGCTTAGGGTG
455977 GTAGGACTAA
Statistics
Matches: 123, Mismatches: 32, Indels: 22
0.69 0.18 0.12
Matches are distributed among these distances:
41 3 0.02
42 1 0.01
43 29 0.24
44 64 0.52
45 22 0.18
46 2 0.02
47 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (44 bp):
CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
Found at i:458315 original size:44 final size:44
Alignment explanation
Indices: 458266--458470 Score: 127
Period size: 44 Copynumber: 4.7 Consensus size: 44
458256 TAAGATTACC
* *
458266 ATCTTCGATCAACTCCACTACTGCTTAGGGTGACAGAATCTGTA
1 ATCTTCAATCAACTCCACTACTGCTTAGGGTGACAGAATCTGCA
* * * * * *
458310 ATCTTCAACCTATTCGACTACTGCTTAGGGTGATAGGA-CT--A
1 ATCTTCAATCAACTCCACTACTGCTTAGGGTGACAGAATCTGCA
* ** * * * * * * *
458351 ATGGCTTAAATCTGCTTCTCTACTG-TATTGGGAAGATA-AGAT-TACC
1 AT--CTTCAATCAACTCCACTACTGCT-TAGGG-TGACAGA-ATCTGCA
*
458397 ATCTTCGATCAACTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCAACTCCACTACTGCTTAGGGTGACAGAATCTGCA
*
458441 ATCTTCAACCAACTCCACTA-TGGCTTAGGG
1 ATCTTCAATCAACTCCACTACT-GCTTAGGG
458471 AGATAGGAGT
Statistics
Matches: 118, Mismatches: 31, Indels: 24
0.68 0.18 0.14
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 26 0.22
44 85 0.72
45 1 0.01
46 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
ATCTTCAATCAACTCCACTACTGCTTAGGGTGACAGAATCTGCA
Found at i:460437 original size:132 final size:132
Alignment explanation
Indices: 460200--463493 Score: 4293
Period size: 132 Copynumber: 25.0 Consensus size: 132
460190 NNNNNNNNNN
* *
460200 AGAATCTGCAATCTTCAACCTACTCCACTACTGTTTAGGGAGATAGGACTAATGGCTTAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
*
460265 CTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTAG-TTAGGG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACT-GCTTAGGG
460328 TGAC
129 TGAC
* * * *
460332 AGAATCTGTAATCTTCAACCCACTCCACTACTGTTTAGGGCGATAGGACTAATGGCTTAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* * *
460397 CTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTCCTTAGGGTG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
460462 AC
131 AC
* * *
460464 AGAATCTGCAATCTTCAACCTACTCCAGTATTGCTTAAGGTGA-ATGGACTAATGGCTTAAATCT
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCT
* * * * *
460528 GTTTCTTCACTGTACTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACT-CTTTAGGG
65 GCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC-TTAGGG
460592 TGAC
129 TGAC
* * * * *
460596 AGAATCTGTAATCTTCAACCCACTCCACTACTGTTTAGGGCGATAGGACTAATGGCTTAAATTTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* * * * * * * *
460661 CTTCTCCTCTGTAATAGGAAGATAAGAATAACCATCTTCGATCTGCTCCGCTACTACTTAGGGCG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
*
460726 AT
131 AC
* * * *
460728 AGAATCTGCAATCTTTAACCGACTCCACTACTTCTTAGGGTGATAGGACTAATGGCTTAAATCTA
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* *
460793 CTTCTCCAATGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
460858 AC
131 AC
* * *
460860 AGAATCTGCAATCTTCAACCTACTCCAGC-ACTGCTTAGGATGATAGGACTAATTGCTAAAATCT
1 AGAATCTGCAATCTTCAACCTACTCCA-CTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCT
* * * *
460924 GCTTCTCCACTGTATTGGGAA-ACTAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGG
65 GCTTCTCCACTGTATTGGGAAGA-TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGG
460988 TGAC
129 TGAC
* * **
460992 AGAATCTACAATCTTCAACCAACTCCACTA-TGGCTTAGGAAGATAGGACT-ATAGGCTTAAATC
1 AGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGGACTAAT-GGCTTAAATC
* * * *
461055 TGCTTCTCCACTGTATTGGGAAGATAAGGTTCACCATCTTCGATCTCCTCCACTATTACTTAGGG
64 TGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGG
461120 TGAC
129 TGAC
* * * * * **
461124 AGAATCTGTAATCTTCAACCTACTCCACTGCTGATTTGGGGGATAGGTTTAATGGCTTAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* **
461189 CTTCTCTACTGTATTGGGAAGATAAGATTCAAAATCTTCGATCTGCTCCACTACTGCTTAGGGTG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
*
461254 AT
131 AC
* * * * * *
461256 AGAATCTCCAATCTTCAACCTACTCCAGTACTGCTTAGGGGGATAGGATTAGTGGCTTAAATTTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* * * * * * *
461321 CTTCTCCATTGTATTGGGAAGATAAGATTCATCGTATTCGATCTGCTCAACTACTGTTTAAGGTG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
*
461386 GC
131 AC
* * * * * **
461388 AGAATCTGTAATCTTCAACCTACTCCACTGCTGATTTGGGGGATAGGTTTAATGGCTTAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* * * *
461453 CTTCTCTACTGTAATGGGTAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
461518 AC
131 AC
* * * * * * * * *
461520 AGAATCCGCAATCCTCAACCTACTCCACTACTGCTTAGGGAGATTGGGCTAATTGCTTACATTTA
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* * * ** * *
461585 CTTCTCCACTATCTTGAGAAGATGTGATTCACCATCTTCGATCCGCTGCACTACTGCTTAGGGTG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
461650 AC
131 AC
* * *
461652 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTGAGGGCTTAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* * * *
461717 TTTCTCCACTGTCTTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGGTTAAGGT
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGT
*
461781 GAT
130 GAC
* * * *
461784 AGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAGTGGCATAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* *
461849 CTTCTCCACTGTATTGGGAAGATAGGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
461914 AC
131 AC
* * *
461916 AGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ATGGACTTATGGCTTAAATCT
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCT
* * * * * * * *
461980 GTTTCTCTACTGTATTGGCAAGATAAGATTCATCATATTCGATCTGCTCCATTACAGTTTAGGGT
65 GCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGT
462045 GAC
130 GAC
* * *
462048 GGAATCTGCAATCTTCAACCTACTCCAATACTGCTTAAGGTGA-ATGGACTAATGGCTTAAATCT
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCT
* * * * *
462112 GTTTCTCCACTATATTGGGAAGATAAGATTCATCATATTCGATATGCTCCACTACT-CTTTAGGG
65 GCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC-TTAGGG
462176 TGAC
129 TGAC
* * * *
462180 AGAATCTGTAATCTTCAACCTACTCCACTACTGTTTAAGGTGATAGGAGTAATGGCTTAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* * * * *
462245 CTTCTCCTCTGTATTAGGAATG-TAAGATTAACTATCTTCGATCTGCTCCACTACTACTTAGGGT
66 CTTCTCCACTGTATTGGGAA-GATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGT
462309 GAC
130 GAC
* * * * *
462312 AGAATCTACAATCTTGAACCGACTCCACTACTTCTTAGGGTGATAGGACTAATGGCTTAAATCTA
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* *
462377 CTTCTCCACTGTATTGGGAAGGTAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
462442 AC
131 AC
* * * * *
462444 AGAATTTGCAATCTTCAACCTACTCCACCACTGCTTAGGATGATAGGTCTAATTGCTTAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* * * * * *
462509 CTTCCCCACTGTATTGGGAAAATAA-ATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
462573 AC
131 AC
* * * * *
462575 AAAATCTGCAATCTTCAAGCAACTCCACTA-TAGCTTAGGGAGATAGGACTATTGGCTTAAATCT
1 AGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTTAAATCT
* * * *
462639 GCTTCTCCACAGTATTGGGAAGATAAGATTCACCGTCTTCGATCTGCGCCACTACT-TTTAGGGT
65 GCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGT
462703 GAC
130 GAC
* * * *
462706 AGAATCTGTAATCTTCAACCTACTCCACTACTTCTTAGGGTCATAGGACTAATGACTTAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* * *
462771 CTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
462836 AC
131 AC
* * * * ** * * *
462838 AAAATCAGCATTCTTTAACCTACTCCACTACTGCAAAAGGTCATAAGACTAATGGCTTAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* ** * *
462903 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCAATCTGCTCCACTACTGCAAAAGGTT
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
462968 AC
131 AC
* * *
462970 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATACGACTAATGCCTTAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* * * * *
463035 CTTCTCCACTATATTGGGAAGATAACATTCACCATCTTCGATCTGCAT-CACTACGGGTTAAGGT
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGT
*
463099 TAC
130 GAC
* * * *
463102 AGAATCAGCAATCTTCAACCGACTCCACTACTGCTTAAGCTGATAGGACTAATGGCTTAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* * *
463167 ATTCTCCACTGTATTGGGAAGATAAGGTTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
463232 AC
131 AC
* * *
463234 AGAATCTGCAATCTTCAACCTGCTCCAATACTGCTTAAGGTGA-ACGGACTAATGGCTTAAATCT
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCT
* * * *
463298 GTTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGT
65 GCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGT
463363 GAC
130 GAC
* * *
463366 AGAATCTGTAATCTTCAACCTAATCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTG
1 AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* ** *
463431 CTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTTTAATCTACTCCACTACTGCTTAGGG
66 CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGG
463494 AGATTGGACT
Statistics
Matches: 2750, Mismatches: 382, Indels: 60
0.86 0.12 0.02
Matches are distributed among these distances:
130 1 0.00
131 239 0.09
132 2497 0.91
133 13 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
AC
Found at i:463481 original size:88 final size:88
Alignment explanation
Indices: 463376--463581 Score: 286
Period size: 88 Copynumber: 2.3 Consensus size: 88
463366 AGAATCTGTA
* * *
463376 ATCTTCAACCTAATCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCTACT
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* *
463441 GTATTGGGAAGATAAGATTCACC
66 ATATTGCGAAGATAAGATTCACC
* * *
463464 ATCTTTAATCTACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTACATCTGCTTCTCCACT
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* *
463529 ATCTTGCGAAGATATGATTCACC
66 ATATTGCGAAGATAAGATTCACC
* * * *
463552 ATCTTCGATCTGCTGCACTACTACTTAGGG
1 ATCTTCAATCTACTCCACTACTGCTTAGGG
463582 TGACAGAATC
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 103 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (88 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
ATATTGCGAAGATAAGATTCACC
Found at i:463562 original size:220 final size:220
Alignment explanation
Indices: 463244--463713 Score: 643
Period size: 220 Copynumber: 2.1 Consensus size: 220
463234 AGAATCTGCA
* * * * * *
463244 ATCTTCAACCTGCTCCAATACTGCTTAAGGTGAACGGACTAATGGCTTAAATCTGTTTCTCCACT
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGAACGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * **
463309 GTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTG
66 ATATTGCGAAGATAAGATTCACCATATTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTG
* * * * * *
463374 TAATCTTCAACCTAATCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCTA
131 CAATCTTCAACCGAATCCACTACTGCTTACGGAGATAGCACTAATGGCTTAAATCTACTTCTCCA
463439 CTGTATTGGGAAGATAAGATTCACC
196 CTGTATTGGGAAGATAAGATTCACC
* ** *
463464 ATCTTTAATCTACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTACATCTGCTTCTCCACT
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGAACGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * *
463529 ATCTTGCGAAGATATGATTCACCATCTTCGATCTGCTGCACTACTACTTAGGGTGACAGAATCTG
66 ATATTGCGAAGATAAGATTCACCATATTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTG
* * * *
463594 CAATCTTGAACCGACTCCACTACTTCTTACGGTGATAGCACTAATGGCTTAAATCTACTTCTCCA
131 CAATCTTCAACCGAATCCACTACTGCTTACGGAGATAGCACTAATGGCTTAAATCTACTTCTCCA
463659 CTGTATTGGGAAGATAAGATTCACC
196 CTGTATTGGGAAGATAAGATTCACC
* * * *
463684 ATCTTCGATCTGCTGCACTACTACTTAGGG
1 ATCTTCAATCTACTCCACTACTGCTTAGGG
463714 TGACAGAATC
Statistics
Matches: 216, Mismatches: 34, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
220 216 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (220 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGAGAACGGACTAATGGCTTAAATCTGCTTCTCCACT
ATATTGCGAAGATAAGATTCACCATATTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTG
CAATCTTCAACCGAATCCACTACTGCTTACGGAGATAGCACTAATGGCTTAAATCTACTTCTCCA
CTGTATTGGGAAGATAAGATTCACC
Found at i:463611 original size:132 final size:132
Alignment explanation
Indices: 463464--468193 Score: 5822
Period size: 132 Copynumber: 35.9 Consensus size: 132
463454 AAGATTCACC
* * * * *
463464 ATCTTTAATCTACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTACATCTGCTTCTCCACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * * *
463529 ATCTTGCGAAGATATGATTCACCATCTTCGATCTGCTGCACTACTACTTAGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
463594 CA
131 CA
* * * * * *
463596 ATCTTGAACCGACTCCACTACTTCTTACGGTGATAGCACTAATGGCTTAAATCTACTTCTCCACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* *
463661 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTGCACTACTACTTAGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
463726 CA
131 CA
* * * * * *
463728 ATCTTGAACCGACTCCACTACTTCTTACGGTGATAGCACTAATGGCTTAAATCTACTTCTCCACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * **
463793 GTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTATTTA-GG-GACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
463856 CA
131 CA
* * * *
463858 ATCTTCGACCAACTCCACTA-TGGCTTAGGGAGATAGGACTATTGGCTTAAATCTGCTTCTCCAC
1 ATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* * * *
463922 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTACTTAGGGTGACAGAATTT
65 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
*
463987 GTA
130 GCA
463990 ATCTTCAACCTACT-CATCTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
1 ATCTTCAACCTACTCCA-CTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* *
464054 TGTATTGGGAAGATAAGATTCACCATCTTCGATTTGCTCCACTACTGCTTAAGGTGACAGAATCT
65 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
464119 GCA
130 GCA
* * * * *
464122 GTCTTCAACCTACTCCACTACGGCCTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCAGT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * * * *
464187 ATATTGCGAAGATAACATTCACCATCTTCGATCTGCAT-CACTACTGGTTAAGGTTACAGAATCA
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCT
464251 GCA
130 GCA
* * * *
464254 ATCTTCAACCGACTCCACTACTGCTTAAGCTGATAGGACTAATGGCTTAAATCTGATTCTCCACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
*
464319 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
*
464384 TA
131 CA
* * *
464386 ATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ACGGACTAATGGCTTAAATCTGTTTCTCCAC
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCAC
* * *
464450 TGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCT
65 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
*
464515 GTA
130 GCA
*
464518 ATCTTCAACCTACTCCACTACTGCTTAGGGTCATAGGACTAATGGCTTAAATCTGCTTCTCCACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * ** * * *
464583 GTATT------A-AAGATTCATCGTCTTTAATCTACTCCACTATTGCTTTGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
*
464641 AA
131 CA
* * * * ** *
464643 ATCCTAAACCTACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTACCTCTGCTTCTACACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * * *
464708 ATATTGAGAAGATATGATTCACCATCTTCGATCCGCTGCACTACTACTTAGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
464773 CA
131 CA
* * *
464775 ATCTTCAACC-ACCTCCAGTACTGCTGAAGGTGA-ATGGACTAATGGCTTAAATCTGCTTCTCTC
1 ATCTTCAACCTA-CTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTC-C
* * *
464838 -CTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTCCTTAGGGTGACAGAAT
63 ACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAAT
464902 CTGCA
128 CTGCA
* * * * *
464907 ATCTTCAACC-ACCTCCAGTACTGCTGAAGGTGA-ATGGACTAATGGCTTAAATCTGTTTCTTCA
1 ATCTTCAACCTA-CTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCA
* * * *
464970 CTGTATTGGGAACATAAGATTCATCATATTCGATCTGCTCCAATACTGCTTAGGGTGACAGAATC
64 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
*
465035 TGTA
129 TGCA
* *
465039 ATCTTCAACCTACTACACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
*
465104 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
*
465169 TA
131 CA
* * *
465171 ATCTTCAACCTACTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCTCT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * *
465236 GTATTAGGAAGATAAGATTAACCATCTTTGATCTGCTCCACTACTACTTAGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
465301 CA
131 CA
* * * * * *
465303 ATCTTGAA-CTGACTCCACTACTTCTTACGGTGATAGGACTAATGGCTAAAATATACTTCTCCAC
1 ATCTTCAACCT-ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* *
465367 TGTATTGGGAAGATAAGGTTCACCATGTTCGATCTAG-TCCACTACTGCTTAGGGTGACAGAATC
65 TGTATTGGGAAGATAAGATTCACCATCTTCGATCT-GCTCCACTACTGCTTAGGGTGACAGAATC
465431 TGCA
129 TGCA
* * * * *
465435 ATCTTCAACCTACTCCACCACTGCTTAGGATGATAGGACTAATTGCTTAAATCTACTTCTCTACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * * **
465500 GTATTGGGAAAATAACATTCATCATATTCGATCTGCTTCACTACTATTTAGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
465565 CA
131 CA
* * *
465567 ATCTTCAACCAACTCCACTA-TGGCTTAGGGAGATAGGACTATTGGCTTAAATCTGCTTCTCCAC
1 ATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* * * *
465631 TGTATTGGGAAGATAAGATTCATCATATTC-AGTCTGCCCCACTACT-TTTAGGGTGACAGAAT-
65 TGTATTGGGAAGATAAGATTCACCATCTTCGA-TCTGCTCCACTACTGCTTAGGGTGACAGAATC
*
465693 TGTA
129 TGCA
465697 ATCTTCAACCTACT-CATCTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
1 ATCTTCAACCTACTCCA-CTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
*
465761 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCT
65 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
465826 GCA
130 GCA
* *
465829 ATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATATGCTTCTCCACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * * * * *
465894 ATATTGGGAAGATAACATTCACCATATTCGATCTGCAT-CACTACTGGTTAAGGTTATAGAATCA
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCT
465958 GCA
130 GCA
* * * ** * *
465961 ATCTTCAACCGACTCCACTACTGCTTTGGGAGATAGGTTTAATGGCTTAAATCTGCTTCTCTAAT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * * **
466026 GTAATGGGTAGATAAGATTCACCATATTCGATCTACTCCACTACAGCCGAGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
466091 CA
131 CA
* * * * * * *
466093 ATCCTCAACCTACTCTAGTACTGCTTAGGGAGATTGGACTAATGGCTTAAATTTGCTTCTCCACA
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * *
466158 GTATTGGAAAGATAAGATTCACCATCTTCGATCTGCTCCACAACTCCTTAGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
466223 CA
131 CA
* *
466225 ATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ATGGACTAATGGCTTAAATCTGCTTCTCCAC
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCAC
* * *
466289 TGTATTGGGAAGGTAAGATTCACCATCTTCGATCTGCTCCACAACTCCTTAGGGTGACAGAATCT
65 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
466354 GCA
130 GCA
* * * * *
466357 ATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ATGGACTAATGGCTTAAATCTGTTTCCCCTC
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCAC
* * * * * * *
466421 TGTATTAGGAAAATAAGATTCATCATATTCAATCTGCTCCACTACTGTTTAGGGTGACAAAATCT
65 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
466486 GCA
130 GCA
* * * *
466489 ATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ATGGACTAATGACTTAAATCTGTTTCTCCAC
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCAC
* * * * *
466553 TGTATTGGGAAGATAAGATTCATCATATAT-GATCTGCTCTACTACTGTTTAGGCTGACAGAATC
65 TGTATTGGGAAGATAAGATTCACCATCT-TCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
*
466617 TGTA
129 TGCA
* * * *
466621 ATCTTCAACCTACTCCACTACTGTTTAGGGTGATAGTACTAATTGCTTAAATCTGCTTCTCCTCT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * *
466686 GTATTAGGAAGATAAGATTAACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
466751 CA
131 CA
* * * * *
466753 ATCTTGAACCGACTCCACTACTTCTTAGGGTGATAGGACTAATGACTTAAATCTACTTCTCCACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * *
466818 GTATTGGGAAGATAAGATTCACCATCTTCGATCTACTGCATTACTGCTTAGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
466883 CA
131 CA
* * * * * * *
466885 ATCTCCAACCTAATCCACCACTGCTTAGGATGATAGGACTAATTGCTTAAATCTGCTTCTCTACA
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * * * *
466950 GTATTTGGAAAATAAGATTCATCATATTCGATCTGCTCAACTACTGTTTAAGGTGACA-AAGTCT
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAA-TCT
*
467014 GTA
130 GCA
* * * ** * * *
467017 ATCTGCAACCTACTCCACTACTGCTTTGGGAGATAGGTTTAATGGCGTAAATATGCTTCTCTACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * *
467082 GTAATGGGTAGATAAGATTCACCATCTTCGATCTGCTCTACTACTGCTTAGGGTGACAGAATCTC
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
467147 CA
131 CA
* * * * * * * * * *
467149 ATCTTGAACCTACTCCAATGCTGCTTAGGGGGAAAAGATTAATGGCTTAAATTTGCTTCCCCATT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * *
467214 GTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCAACTACTGTTTAAGGTGACA-AAGTCT
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAA-TCT
*
467278 GTA
130 GCA
* * * ** * * *
467281 ATCTGCAACCTACTCCACTACTGCTTTGGGAGATAGGTTTAATGGCGTAAATATGCTTCTCTACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * *
467346 GTAATGGGTAGATAAGATTCACCATCTTCGATCTGCTCTACTACTGCTTAGGGTGACAGAATCTC
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
467411 CA
131 CA
* * * * * * * * * *
467413 ATCTTGAACCTACTCCAATGCTGCTTAGGGGGAAAAGATTAATGGCTTAAATTTGCTTCCCCATT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * *
467478 GTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCAACTACTGTTTAAGGTGACA-AAGTCT
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAA-TCT
*
467542 GTA
130 GCA
* * * ** * * *
467545 ATCTGCAACCTACTCCACTACTGCTTTGGGAGATAGGTTTAATGGCGTAAATATGCTTCTCTACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * *
467610 GTAATGGGTAGATAAGATTCACCATCTTCGATCTGCTCTACTACTGCTTAGGGTGACAGAATCTC
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
467675 CA
131 CA
* * * * * * * * * *
467677 ATCTTGAACCTACTCCAATGCTGCTTAGGGGGAAAAGATTAATGGCTTAAATTTGCTTCCCCATT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * *
467742 GTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCAACTACTGTTTAAGGTGACA-AAGTCT
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAA-TCT
*
467806 GTA
130 GCA
* * * ** * * *
467809 ATCTGCAACCTACTCCACTACTGCTTTGGGAGATAGGTTTAATGGCGTAAATATGCTTCTCTACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * *
467874 GTAATGGGTAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTC
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
467939 CA
131 CA
* * * * * * *
467941 ATCTTGAACCTACTCCAATGCTGCTTAGGGTGATAAGATTAATGGCTTAAATTTGCTTCTCCATT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * *
468006 GTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCAACTACTGTTTAAGGTGACA-AAGTCT
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAA-TCT
*
468070 GTA
130 GCA
* * ** * *
468073 ATCTTCAACCTACTCCACTACTGCTTTGGGAGATAGGTTTAATGGCTTAAATATGCTTCTCTACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * *
468138 GTAATGGGTAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGA
66 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGA
468194 NNNNNNNNNN
Statistics
Matches: 3993, Mismatches: 555, Indels: 100
0.86 0.12 0.02
Matches are distributed among these distances:
125 106 0.03
126 1 0.00
129 3 0.00
130 210 0.05
131 60 0.02
132 3589 0.90
133 24 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
CA
Found at i:463639 original size:352 final size:352
Alignment explanation
Indices: 463123--463813 Score: 1026
Period size: 352 Copynumber: 2.0 Consensus size: 352
463113 TCTTCAACCG
* * *
463123 ACTCCACTACTGCTTAAGCTGATAGGACTAATGGCTTAAATCTGATTCTCCACTGTATTGGGAAG
1 ACTCCACTACTGCTTAAGCAGATAGGACTAATGGCTTAAATCTGATTCTCCACTATATTGCGAAG
* *
463188 ATAAGGTTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGCAATCTTCAAC
66 ATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAAC
* **
463253 CTGCTCCAATACTGCTTAAGGTGAACGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTGGGA
131 CTGCTCCAATACTGCTTAAGGTGAACGCACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGA
* ** *
463318 AGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCA
196 AGATAAGATTCACCATATTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCA
* * * * *
463383 ACCTAATCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGG
261 ACCGAATCCACTACTGCTTACGGAGATAGCACTAATGGCTTAAATCTACTTCTCCACTGTATTGG
*
463448 GAAGATAAGATTCACCATCTTTAATCT
326 GAAAATAAGATTCACCATCTTTAATCT
* * * * * *
463475 ACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTACATCTGCTTCTCCACTATCTTGCGAAG
1 ACTCCACTACTGCTTAAGCAGATAGGACTAATGGCTTAAATCTGATTCTCCACTATATTGCGAAG
* * *
463540 ATATGATTCACCATCTTCGATCTGCTGCACTACTACTTAGGGTGACAGAATCTGCAATCTTGAAC
66 ATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAAC
* * *
463605 C-GACTCCACTACTTCTTACGGTGATA-GCACTAATGGCTTAAATCTACTTCTCCACTGTATTGG
131 CTG-CTCCAATACTGCTTAAGGTGA-ACGCACTAATGGCTTAAATCTACTTCTCCACTGTATTGG
* *
463668 GAAGATAAGATTCACCATCTTCGATCTGCTGCACTACTACTTAGGGTGACAGAATCTGCAATCTT
194 GAAGATAAGATTCACCATATTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTT
* * * *
463733 GAACCGACTCCACTACTTCTTACGGTGATAGCACTAATGGCTTAAATCTACTTCTCCACTGTATT
259 CAACCGAATCCACTACTGCTTACGGAGATAGCACTAATGGCTTAAATCTACTTCTCCACTGTATT
463798 GGGAAAATAAGATTCA
324 GGGAAAATAAGATTCA
463814 TCATATTCGA
Statistics
Matches: 301, Mismatches: 36, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
351 1 0.00
352 299 0.99
353 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (352 bp):
ACTCCACTACTGCTTAAGCAGATAGGACTAATGGCTTAAATCTGATTCTCCACTATATTGCGAAG
ATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAAC
CTGCTCCAATACTGCTTAAGGTGAACGCACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGA
AGATAAGATTCACCATATTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCA
ACCGAATCCACTACTGCTTACGGAGATAGCACTAATGGCTTAAATCTACTTCTCCACTGTATTGG
GAAAATAAGATTCACCATCTTTAATCT
Found at i:463647 original size:484 final size:483
Alignment explanation
Indices: 462980--463975 Score: 1486
Period size: 484 Copynumber: 2.1 Consensus size: 483
462970 AGAATCTGCA
*
462980 ATCTTCAACCTACTCCACTACTGCTTA-GGATGATACGACTAATGCCTTAAATCTGCTTCTCCAC
1 ATCTTCAATCTACTCCACTACTGCTTAGGGATGATACGACTAATGCCTTAAATCTGCTTCTCCAC
* ** *
463044 TATATTGGGAAGATAACATTCACCATCTTCGATCTGCATCACTACGGGTTAAGGTTACAGAATCA
66 TATATTGCGAAGATAACATTCACCATCTTCGATCTGCATCACTACGACTTAAGGTGACAGAATCA
*
463109 GCAATCTTCAACCGACTCCACTACTGCTTAAGCTGATAGGACTAATGGCTTAAATCTGA-TTCTC
131 GCAATCTTCAACCGACTCCACTACTGCTTAAGCTGATAGCACTAATGGCTTAAATCT-ACTTCTC
* *
463173 CACTGTATTGGGAAGATAAGGTTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAA
195 CACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAA
* **
463238 TCTGCAATCTTCAACCTG-CTCCAATACTGCTTAAGGTGA-ACGGACTAATGGCTTAAATCTGTT
260 TCTGCAATCTTCAACC-GACTCCAATACTGCTTAAGGTGATA-GCACTAATGGCTTAAATCTACT
* *
463301 TCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGAC
323 TCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTCCACTACTATTTA-GG-GAC
*
463366 AGAATCTGTAATCTTCAACCTAA-TCCACTACT-GCTTAGGGAGATAGGACTAATGGCTTAAATC
386 AGAATCTGCAATCTTCAACC-AACTCCACTA-TGGCTTAGGGAGATAGGACTAATGGCTTAAATC
*
463429 TGCTTCTCTACTGTATTGGGAAGATAAGATTCACC
449 TGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
* ** * *
463464 ATCTTTAATCTACTCCACTACTGCTTAGGGA-GATTGGACTAATGGCTTACATCTGCTTCTCCAC
1 ATCTTCAATCTACTCCACTACTGCTTAGGGATGATACGACTAATGCCTTAAATCTGCTTCTCCAC
* ** * *
463528 TATCTTGCGAAGATATGATTCACCATCTTCGATCTGC-TGCACTACTACTTAGGGTGACAGAATC
66 TATATTGCGAAGATAACATTCACCATCTTCGATCTGCAT-CACTACGACTTAAGGTGACAGAATC
* * * * *
463592 TGCAATCTTGAACCGACTCCACTACTTCTTACGGTGATAGCACTAATGGCTTAAATCTACTTCTC
130 AGCAATCTTCAACCGACTCCACTACTGCTTAAGCTGATAGCACTAATGGCTTAAATCTACTTCTC
*
463657 CACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTGCACTACTACTTAGGGTGACAGAA
195 CACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAA
* * * *
463722 TCTGCAATCTTGAACCGACTCCACTACTTCTTACGGTGATAGCACTAATGGCTTAAATCTACTTC
260 TCTGCAATCTTCAACCGACTCCAATACTGCTTAAGGTGATAGCACTAATGGCTTAAATCTACTTC
*
463787 TCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTATTTAGGGACAGAA
325 TCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTCCACTACTATTTAGGGACAGAA
* *
463852 TCTGCAATCTTCGACCAACTCCACTATGGCTTAGGGAGATAGGACTATTGGCTTAAATCTGCTTC
390 TCTGCAATCTTCAACCAACTCCACTATGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
463917 TCCACTGTATTGGGAAGATAAGATTCACC
455 TCCACTGTATTGGGAAGATAAGATTCACC
* * * *
463946 ATCTTCGATCTCCTCCACTATTACTTAGGG
1 ATCTTCAATCTACTCCACTACTGCTTAGGG
463976 TGACAGAATT
Statistics
Matches: 462, Mismatches: 43, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
481 3 0.01
482 117 0.25
483 5 0.01
484 333 0.72
485 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (483 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGATGATACGACTAATGCCTTAAATCTGCTTCTCCAC
TATATTGCGAAGATAACATTCACCATCTTCGATCTGCATCACTACGACTTAAGGTGACAGAATCA
GCAATCTTCAACCGACTCCACTACTGCTTAAGCTGATAGCACTAATGGCTTAAATCTACTTCTCC
ACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAAT
CTGCAATCTTCAACCGACTCCAATACTGCTTAAGGTGATAGCACTAATGGCTTAAATCTACTTCT
CCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTCCACTACTATTTAGGGACAGAAT
CTGCAATCTTCAACCAACTCCACTATGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCT
CCACTGTATTGGGAAGATAAGATTCACC
Found at i:469434 original size:132 final size:132
Alignment explanation
Indices: 469197--472387 Score: 2248
Period size: 132 Copynumber: 24.2 Consensus size: 132
469187 NNNCATCATA
* *
469197 TTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
*
469262 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAGGATAAGATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
469327 TC
131 TC
* * * *
469329 TTCGATCTGCAT-TACTGCTGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTG
1 TTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
* *
469393 CTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATC
65 CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
469458 ATC
130 ATC
* *
469461 TTCGATCTGCTCCACTACT-CTTTAGGGTGATAGAATCTGCTATCTTCAACCTACTCCACTACTG
1 TTCGATCTGCTCCACTACTGC-TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
* *
469525 CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCACCATTGTATTGGGAAGATAAGATTCACC
65 CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
469590 ATC
130 ATC
* * *
469593 TTCTATTTTCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * * * *
469658 TTTGGGTGATAAGACAAATGGTTTAAATCTGCTTCT----TGTATTGGGATGATAAGATTCATCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
*
469719 TA
131 TC
* * *
469721 TTTGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * *
469786 GTAGGGAGATAGGTCTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
469851 TC
131 TC
* * * * *
469853 TTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTACAATCCTCATCCTGCTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * * ** * * * * *
469918 TTAGAGAGATTGGACTAATGGCTTACATCTGCTTCTCCACAATCTTGAGAAGGTATGATTCATCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
469983 T-
131 TC
* * * *
469984 TTCGATCCGCTGCACTACTTCTTAGGGTGACAGAATCTGCAATCTTTAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * *
470049 TTAGGGTGATAGAACTGATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGATAAGATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
470114 TC
131 TC
* * * *
470116 TTCGATCTG-TGCCTCTACT-TTTAGGGTAACAGAATCTGCAACCTTCAACCTACTCCACTACTG
1 TTCGATCTGCT-CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
*
470179 CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAAATTCACC
65 CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
470244 ATC
130 ATC
* * * * * * * * *
470247 TTCGATCTGATCCACTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTGCTTCTCCACT
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACT
* * * * ** * * * * *
470309 G-TATTGGGAAGATAAGATTCACCAT--CTTCGATCTGC-TCTACTACTCCT-TAGGG-TGA-CA
64 GCT-TAGGG-TGATAGGACT-A--ATGGCTTAAATCTGCTTCT-CCACT-GTATTGGGAAGATAA
* * *
470367 GAGTCTGCAATC
122 GATTC-ACCATC
* * * * ** ** * * *
470379 TTCAACCTACTCCACTACAGCTTAGGGAAATTGGA-CT--AATGGCTTAAATCTGCTTCTCCACT
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAA-C--CTACTCCACT
** * * ** *
470441 A-T-CTT-GAGAAGATAAGATTCACCAT--CTTCGATCTG---CTCCACTGCTACTTAGGG-TGA
61 ACTGCTTAG-GGTGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACTG-TA-TT-GGGAAGA
* * ***
470497 -CAGAATCTGTAATC
119 TAAGATTC-ACCATC
* * * * * * * * * * * *
470511 TT-TAACCGACCCCACTAC-GTCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTGCTTCTCCA
1 TTCGATCTG-CTCCACTACTG-CTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTA
* * ** ** * * * * *
470571 CTGTCTT-GGGAAGATATGATTCGCCAT--CTTCGATCTAC-TCGACTACTGCT-TAGGG-TGA-
62 CTG-CTTAGGG-TGATAGGA--C-TAATGGCTTAAATCTGCTTC-TCCACTG-TATTGGGAAGAT
* * * *
470629 CAGAATCTGCAATC
120 AAGATTC-ACCATC
* * * * * * * *
470643 TTC-AACCGACTCCACTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTCCTCCTCTAC
1 TTCGATCTG-CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTAC
* ** * ** * *** ** * * * *
470704 TG-TATTGGGAAAATAAGTTTCATCATATTCGATCTGCTTCACTAC--TATT--TAAGGTGACAG
63 TGCT-TAGGG-TGATAGGACTAAT-GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT-A-AG
* * *
470764 AATCTGCAATC
123 ATTC-ACCATC
* * * * * * * *
470775 TTCCA-CCGACTCCACTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTCCTCCTCTAC
1 TTCGATCTG-CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTAC
* ** * ** * *** ** * * * *
470836 TG-TATTGGGAAAATAAGTTTCATCATATTCGATCTGCTTCACTAC--TATT--TAAGGTGACAG
63 TGCT-TAGGG-TGATAGGACTAAT-GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT-A-AG
* * *
470896 AATCTGCAATC
123 ATTC-ACCATC
* * * * * * * *
470907 TTCCA-CCGACTCCACTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTCCTCCTCTAC
1 TTCGATCTG-CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTAC
* ** * ** * *** ** * * * *
470968 TG-TATTGGGAAAATAAGTTTCATCATATTCGATCTGCTTCACTAC--TATT--TAAGGTGACAG
63 TGCT-TAGGG-TGATAGGACTAAT-GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT-A-AG
* * *
471028 AATCTGCAATC
123 ATTC-ACCATC
* * * * * * * *
471039 TTCCA-CCGACTCCACTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTCCTCCTCTAC
1 TTCGATCTG-CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTAC
* ** * ** * *** ** * * * *
471100 TG-TATTGGGAAAATAAGTTTCATCATATTCGATCTGCTTCACTAC--TATT--TAAGGTGACAG
63 TGCT-TAGGG-TGATAGGACTAAT-GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT-A-AG
* * *
471160 AATCTGCAATC
123 ATTC-ACCATC
* * * * *
471171 TTCCA-CCGACTCCACTACTGCTTAGGGTGATAGAATCTGCAATCCTAAACCTACTCCACTACTG
1 TTCGATCTG-CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
* * * * * * * *
471235 CTTAGGGAGATTGGACTAATGGCTTACATCTGCTTCTCCACTATCTTGAGAAGATATGACTCACC
65 CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
471300 ATC
130 ATC
* * * * *
471303 TTTGATCCGCTGCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCAATACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * *
471368 TTAGGATGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTACTGGGAAGATAAGATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
471433 TC
131 TC
* * * *
471435 TTCGATCTG-TATCACTACTGGTTAGGGTGACAGAATCTGCTATCTTCAACCTTCTCCACTACTG
1 TTCGATCTGCT-CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
* *
471499 CTTAGGATGATAGGACTAATGGCATAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
65 CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
471564 ATC
130 ATC
* * *
471567 TTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGCTATCTTCAACCTTCTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * *
471632 TTAGTGTGATAGGACTAATGGCTTAAATCTGGTTCGCCACTGTATTGGGAAGATAAGATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
471697 TC
131 TC
***
471699 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCGGGTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * * *
471764 TT-GAGGTGATCGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTAGGACGATAAGATTCATC
66 TTAG-GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
*
471828 ATA
130 ATC
* * **
471831 TTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACACC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * *
471896 TTAGGGAGATAGGACTAATGGCTTAAATCTGTTTCTCTACTGTATTGGGAAAATAAGATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
471961 TC
131 TC
* * *
471963 TTCGATCTACTCCACTACTACTTAGGGTGACAGAATCTGCAATCCTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * * ** * * * *
472028 TTAGGGAGATTGGACTAATGGTTTACATCTGCTTCTCCACAATGTTGAGAGGATATGATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
472093 TC
131 TC
* * *
472095 TTCGATCCGCTGCACTACTTCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * *
472160 TTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAGGATAAGATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
472225 TC
131 TC
* * *
472227 TTCGATCTGCGCCACTACT-TTTAGGGTGACAGAATCTGCAACCTTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * *
472291 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGATAAAATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
472356 TC
131 TC
* *
472358 TTCGATCTGATCCACTAATGCTTAGGGTGA
1 TTCGATCTGCTCCACTACTGCTTAGGGTGA
472388 TAGGACTAAT
Statistics
Matches: 2659, Mismatches: 329, Indels: 142
0.85 0.11 0.05
Matches are distributed among these distances:
128 112 0.04
129 19 0.01
130 6 0.00
131 397 0.15
132 2034 0.76
133 62 0.02
134 6 0.00
135 23 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (132 bp):
TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
TC
Found at i:470318 original size:88 final size:88
Alignment explanation
Indices: 470169--470364 Score: 356
Period size: 88 Copynumber: 2.2 Consensus size: 88
470159 TTCAACCTAC
470169 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
470234 AAAATTCACCATCTTCGATCTGA
66 AAAATTCACCATCTTCGATCTGA
470257 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* *
470322 AAGATTCACCATCTTCGATCTGC
66 AAAATTCACCATCTTCGATCTGA
* *
470345 TCTACTACTCCTTAGGGTGA
1 TCCACTACTGCTTAGGGTGA
470365 CAGAGTCTGC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 104 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (88 bp):
TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
AAAATTCACCATCTTCGATCTGA
Found at i:470344 original size:45 final size:45
Alignment explanation
Indices: 470206--470345 Score: 119
Period size: 45 Copynumber: 3.2 Consensus size: 45
470196 AATGGCTTAA
*
470206 ATCTGCTTCTCCACTGTATTGGGAAGATAAAATTCACCATCTTCG
1 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
* * * * * * * * **
470251 ATCTGATCCACTACTGCT-TAGGG-TGATAGGACT-A--ATGGCTTAA
1 ATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACCAT--CTTCG
470294 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
1 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
470339 ATCTGCT
1 ATCTGCT
470346 CTACTACTCC
Statistics
Matches: 66, Mismatches: 21, Indels: 16
0.64 0.20 0.16
Matches are distributed among these distances:
41 2 0.03
42 1 0.02
43 20 0.30
44 13 0.20
45 27 0.41
46 1 0.02
47 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (45 bp):
ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
Found at i:470454 original size:220 final size:218
Alignment explanation
Indices: 470038--470501 Score: 705
Period size: 220 Copynumber: 2.1 Consensus size: 218
470028 TTTAACCTAC
*
470038 TCCACTACTGCTTAGGGTGATAGAACTGATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGAACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGAT
*
470103 AAGATTCACCATCTTCGATCTGTGCCTCTACTTTTAGGGTAACAGAATCTGCAACCTTCAACCTA
66 AAGATTCACCATCTTCGATCTGT-CCTCTACTCTTAGGGTAACAGAATCTGCAACCTTCAACCTA
* ** * *
470168 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
130 CTCCACTACAGCTTAGGGAAATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGAGAAGA
470233 TAAAATTCACCATCTTCGATCTGA
195 TAAAATTCACCATCTTCGATCTGA
* * *
470257 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGAACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGAT
* * *
470322 AAGATTCACCATCTTCGATCTG-CTCTACTACTCCTTAGGGTGACAGAGTCTGCAATCTTCAACC
66 AAGATTCACCATCTTCGATCTGTC-CT-CTACT-CTTAGGGTAACAGAATCTGCAACCTTCAACC
* *
470386 TACTCCACTACAGCTTAGGGAAATTGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGAGAA
128 TACTCCACTACAGCTTAGGGAAATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGAGAA
* *
470451 GATAAGATTCACCATCTTCGATCTGC
193 GATAAAATTCACCATCTTCGATCTGA
* * *
470477 TCCACTGCTACTTAGGGTGACAGAA
1 TCCACTACTGCTTAGGGTGATAGAA
470502 TCTGTAATCT
Statistics
Matches: 221, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
217 1 0.00
218 2 0.01
219 88 0.40
220 130 0.59
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (218 bp):
TCCACTACTGCTTAGGGTGATAGAACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGAT
AAGATTCACCATCTTCGATCTGTCCTCTACTCTTAGGGTAACAGAATCTGCAACCTTCAACCTAC
TCCACTACAGCTTAGGGAAATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGAGAAGAT
AAAATTCACCATCTTCGATCTGA
Found at i:471189 original size:44 final size:44
Alignment explanation
Indices: 471139--471238 Score: 119
Period size: 44 Copynumber: 2.3 Consensus size: 44
471129 CGATCTGCTT
* * **
471139 CACTACTATTTAAGGTGACAGAATCTGCAATCTTCCACCGACTC
1 CACTACTACTTAAGGTGACAGAATCTGCAATCCTAAACCGACTC
* * * *
471183 CACTACTGCTTAGGGTGATAGAATCTGCAATCCTAAACCTACTC
1 CACTACTACTTAAGGTGACAGAATCTGCAATCCTAAACCGACTC
*
471227 CACTACTGCTTA
1 CACTACTACTTA
471239 GGGAGATTGG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (44 bp):
CACTACTACTTAAGGTGACAGAATCTGCAATCCTAAACCGACTC
Found at i:471239 original size:44 final size:44
Alignment explanation
Indices: 471152--471241 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 44
471142 TACTATTTAA
* **
471152 GGTGACAGAATCTGCAATCTTCCACCGACTCCACTACTGCTTAG
1 GGTGACAGAATCTGCAATCCTAAACCGACTCCACTACTGCTTAG
* *
471196 GGTGATAGAATCTGCAATCCTAAACCTACTCCACTACTGCTTAG
1 GGTGACAGAATCTGCAATCCTAAACCGACTCCACTACTGCTTAG
471240 GG
1 GG
471242 AGATTGGACT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (44 bp):
GGTGACAGAATCTGCAATCCTAAACCGACTCCACTACTGCTTAG
Found at i:471321 original size:176 final size:176
Alignment explanation
Indices: 471020--471379 Score: 441
Period size: 176 Copynumber: 2.0 Consensus size: 176
471010 TACTATTTAA
* * ** *
471020 GGTGACAGAATCTGCAATCTTCCACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
1 GGTGATAGAATCTGCAATCCTAAACCGACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTA
* * * ** * * * *
471085 AATCTCCTCCTCTACTGTATTGGGAAAATAAGTTTCATCATATTCGATCTGCTTCACTACTATTT
66 AATCTCCTCCTCCACTATATTGAGAAAATAAGACTCACCATATTCGATCCGCTGCACTACTACTT
* *
471150 AAGGTGACAGAATCTGCAATCTTCCACCGACTCCACTACTGCTTAG
131 AAGGTGACAGAATCTGCAATCTTCAACCGACTCCAATACTGCTTAG
* *
471196 GGTGATAGAATCTGCAATCCTAAACCTACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTA
1 GGTGATAGAATCTGCAATCCTAAACCGACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTA
* * * * * * * * *
471261 CATCTGCTTCTCCACTATCTTGAGAAGATATGACTCACCATCTTTGATCCGCTGCACTACTGCTT
66 AATCTCCTCCTCCACTATATTGAGAAAATAAGACTCACCATATTCGATCCGCTGCACTACTACTT
* * *
471326 AGGGTGACAGAATCTGTAATCTTCAACCTACTCCAATACTGCTTAG
131 AAGGTGACAGAATCTGCAATCTTCAACCGACTCCAATACTGCTTAG
*
471372 GATGATAG
1 GGTGATAG
471380 GACTAATGGC
Statistics
Matches: 153, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
176 153 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (176 bp):
GGTGATAGAATCTGCAATCCTAAACCGACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTA
AATCTCCTCCTCCACTATATTGAGAAAATAAGACTCACCATATTCGATCCGCTGCACTACTACTT
AAGGTGACAGAATCTGCAATCTTCAACCGACTCCAATACTGCTTAG
Found at i:471744 original size:44 final size:44
Alignment explanation
Indices: 471564--471747 Score: 108
Period size: 44 Copynumber: 4.2 Consensus size: 44
471554 AAGATTCACC
* * *
471564 ATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGCT
1 ATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
* * * * *
471608 ATCTTCAACCTTCTCCACTACTGCTTAGTGTGATAGGA-CT--A
1 ATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
* * * * * * * * * * *
471649 ATGGCTTAAATCTGGTTCGCCACTG-TATTGGGAAGATAAGATTC-ACC
1 AT--CTTCAATCTGCTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCA
*
471696 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
471740 ATCTTCAA
1 ATCTTCAA
471748 CCTACTCGGG
Statistics
Matches: 95, Mismatches: 35, Indels: 20
0.63 0.23 0.13
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 24 0.25
44 43 0.45
45 21 0.22
46 2 0.02
47 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (44 bp):
ATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
Found at i:472432 original size:88 final size:88
Alignment explanation
Indices: 472280--472475 Score: 322
Period size: 88 Copynumber: 2.2 Consensus size: 88
472270 TTCAACCTAC
472280 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGAT
*
472345 AAAATTCACCATCTTCGATCTGA
66 AAAATTCACCATCATCGATCTGA
* * *
472368 TCCACTAATGCTTAGGGTGATAGGACTAATGGCTT-AATACTGCTTCTCCACTGTATTGGGAAGA
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAT-CTGCTTCTCCACTATATTGGAAAGA
* *
472432 TAAGATTCACCATCATCGATCTGC
65 TAAAATTCACCATCATCGATCTGA
472456 TCCACTACTGCTTAGGGTGA
1 TCCACTACTGCTTAGGGTGA
472476 CAGAATCTGC
Statistics
Matches: 100, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
87 3 0.03
88 97 0.97
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (88 bp):
TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGAT
AAAATTCACCATCATCGATCTGA
Found at i:472576 original size:220 final size:219
Alignment explanation
Indices: 472149--472605 Score: 709
Period size: 220 Copynumber: 2.1 Consensus size: 219
472139 TTCAACCTAC
* *
472149 TCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAGGAT
1 TCCACTAATGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGAT
* *
472214 AAGATTCACCATCTTCGATCTGCGCCACTACTTTTAGGGTGACAGAATCTGCAACCTTCAACCTA
66 AAGATTCACCATCATCGATCTGCGCCACTACTCTTAGGGTGACAGAATCTGCAACCTTCAACCTA
* *
472279 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGA
131 CACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGA
*
472344 TAAAATTCACCATCTTCGATCTGA
196 TAAAATTCACCATCTTCGATCTCA
* *
472368 TCCACTAATGCTTAGGGTGATAGGACTAATGGCTT-AATACTGCTTCTCCACTGTATTGGGAAGA
1 TCCACTAATGCTTAGGGTGATAGGACTAATGACTTAAAT-CTGCTTCTCCACTCTATTGGGAAGA
* * *
472432 TAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCC
65 TAAGATTCACCATCATCGATCTGCGCCACTACT-CTTAGGGTGACAGAATCTGCAACCTTCAACC
* * * *
472497 TACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATTTTCTTCTCCACTGTATTGGTAA
129 TACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAA
* * *
472562 GATAAGATTCACCATCTTTGATCTCC
194 GATAAAATTCACCATCTTCGATCTCA
*
472588 TCCACTATTGCTTAGGGT
1 TCCACTAATGCTTAGGGT
472606 AACAGAATCT
Statistics
Matches: 216, Mismatches: 20, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
218 3 0.01
219 87 0.40
220 126 0.58
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (219 bp):
TCCACTAATGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGAT
AAGATTCACCATCATCGATCTGCGCCACTACTCTTAGGGTGACAGAATCTGCAACCTTCAACCTA
CACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGA
TAAAATTCACCATCTTCGATCTCA
Found at i:472592 original size:132 final size:131
Alignment explanation
Indices: 472368--473042 Score: 874
Period size: 132 Copynumber: 5.1 Consensus size: 131
472358 TTCGATCTGA
*
472368 TCCACTAATGCTTAGGGTGATAGGACTAATGGCTT-AATACTGCTTCTCCACTGTATTGGGAAGA
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAT-CTGCTTCTCCACTGTATT-GGAAGA
* * * *
472432 TAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCC
64 TAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACC
472497 TAC
129 TAC
* * * *
472500 ACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATTTTCTTCTCCACTGTATTGGTAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG-AAGAT
* * *
472565 AAGATTCACCATCTTTGATCTCCTCCACTATTGCTTAGGGTAACAGAATCTGCAATCCTCAACCT
65 AAGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACCT
472630 AC
130 AC
* *
472632 TCCACTACTTCTTAGGGTGATAGGGA-TAATGGCTTATATCTGCTTCTCCACTGTATTGGAAAGA
1 TCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG-AAGA
* * * * * * * * * *
472696 TAAGATTCATCATATTCGATCTGCTCCACTATTGTTTAGGTTGACAAAATCCGCAATCTTTAACC
64 TAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACC
472761 TAC
129 TAC
* * *
472764 TCCACTACTGCTCTA-GGAGATAGGACTAATGGCTTAAATCTACTTCTCCTCTGTATTTGGAAGA
1 TCCACTACTGCT-TAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA-TTGGAAGA
* * *
472828 CAAGATTTACCATCTTCGATCTACTCCACTACTGCTTAGGGTAACAGAATCTGC-ATCTTCAACC
64 TAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACC
472892 TAC
129 TAC
* * * * * * *
472895 TCCACTACAGCTTAGAGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTCAGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT-GGAAGAT
** *
472960 AAGATTCACCATCTTCGATC-CGCTCCAAAACTGCTTAGGGTAACAGAATCTGAAATCTTCAACC
65 AAGATTCACCATCTTCGATCTC-CTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACC
473024 TAC
129 TAC
473027 TCCACTACTGCTTAGG
1 TCCACTACTGCTTAGG
473043 NNNNNNNNNN
Statistics
Matches: 470, Mismatches: 63, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
130 4 0.01
131 114 0.24
132 340 0.72
133 12 0.03
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (131 bp):
TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGAAGATA
AGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACCTA
C
Found at i:495682 original size:132 final size:131
Alignment explanation
Indices: 495435--496168 Score: 850
Period size: 132 Copynumber: 5.6 Consensus size: 131
495425 NNNNNNNNNN
* * *
495435 CACTATCTTGAGAAGATAAGATTCACCATCTTCGATCTGCTACACTACTACTTAGGGTGACAGAA
1 CACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCT-CACTACTGCTTAGGGTGACAGAA
* * *
495500 TCTGTAATCTTTAACCGACTCCACTAC-GTCTTAGGGTGATAGGACCAATGGCTTAAATCTGCTT
65 TCTGCAATCTTCAACCGACTCCACTACTG-CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
495564 CAC
129 CAC
* * * *
495567 CACTGTCTTGGGAAGATATGATTCACCATCTTCGATCTACTCGACTACTGCTTAGGGTGACAGAA
1 CACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC-ACTACTGCTTAGGGTGACAGAA
*
495632 TCTGCAATCTTCAACCGACTCCATTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTC
65 TCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTC
495697 AC
130 AC
* * * * ** *
495699 CACTGA-ATTGGGAAAATAAGTTTCATCATATTCGATCTGCTTCACTACTATTTAAGGTGACAGA
1 CACT-ATATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCACTACTGCTTAGGGTGACAGA
* * * *
495763 ATCTGCAATCTTCAACCAAGC-CCACCA-TGGCTTTGGGAGATAGGACTAATGGCTTAAATCTGC
64 ATCTGCAATCTTCAACCGA-CTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTTAAATCTGC
*
495826 TTCTC
127 TTCAC
* * **
495831 CACTGTATTAGGAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAA
1 CACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCT-CACTACTGCTTAGGGTGACAGAA
* * * * * * *
495896 TCTGCAATCTTCAGCCTACTCCCCTACTGGTGAGGGTGATAGGAGTAATGGCTTAAATCTGC-TG
65 TCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTC
495960 ATC
130 A-C
* * * *
495963 CACTATATTGGGAAGATAAGATTCACGATCTTCGATGTACTCCACTACTGCTTAGTGTGACAGAA
1 CACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCT-CACTACTGCTTAGGGTGACAGAA
* * * * * * * * *
496028 TCTGCAATCCTAAACCTACTCCACTATTGCTTAGGGAGATTGGACTAGTGGCTTACATCTTCTTC
65 TCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTC
*
496093 TC
130 AC
* * * *
496095 CACTATCTTGAGAAGATATGATTCACCATCTTCGAT-TCGCTGCACTACTGCTTAGGGTGACATA
1 CACTATATTGGGAAGATAAGATTCACCATCTTCGATCT-GCT-CACTACTGCTTAGGGTGACAGA
496159 ATCTGCAATC
64 ATCTGCAATC
496169 NNNNNNNNNN
Statistics
Matches: 510, Mismatches: 79, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
131 6 0.01
132 498 0.98
133 6 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (131 bp):
CACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCACTACTGCTTAGGGTGACAGAAT
CTGCAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCA
C
Found at i:497058 original size:88 final size:88
Alignment explanation
Indices: 496906--497101 Score: 365
Period size: 88 Copynumber: 2.2 Consensus size: 88
496896 TTCAACCTAC
496906 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
496971 AAAATTCACCATCTTCGATCTGA
66 AAAATTCACCATCTTCGATCTGA
* *
496994 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATTTGCTTCTCCACTGTATTGGTAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
*
497059 AAGATTCACCATCTTCGATCTGA
66 AAAATTCACCATCTTCGATCTGA
497082 TCCACTACTGCTTAGGGTGA
1 TCCACTACTGCTTAGGGTGA
497102 CAGAATGTGC
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
88 105 1.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (88 bp):
TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
AAAATTCACCATCTTCGATCTGA
Found at i:497200 original size:220 final size:219
Alignment explanation
Indices: 496815--497233 Score: 649
Period size: 220 Copynumber: 1.9 Consensus size: 219
496805 NNNNNNNATC
* *
496815 TGCTTCTCCACTCTATTGGGAAGATAAGATTCACCATCTTCGATCTGCGCCACAACTTTTAGGGT
1 TGCTTCTCCACTCTATTGGGAAGATAAGATTCACCATCTTCGATCTGAGCCACAACTCTTAGGGT
* * *
496880 GACAGAATCTGTAACCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAT
66 GACAGAATCTGCAACCTTCAACCTACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAAT
*
496945 CTGCTTCTCCACTGTATTGGGAAGATAAAATTCACCATCTTCGATCTGATCCACTACTGCTTAGG
131 CTGCTTCTCCACTGTATTGGGAAGATAAAATTCACCATCTTCGATCTCATCCACTACTGCTTAGG
497010 GTGATAGGACTAATGGCTTAAATT
196 GTGATAGGACTAATGGCTTAAATT
* * * *
497034 TGCTTCTCCACTGTATTGGTAAGATAAGATTCACCATCTTCGATCTGATCCACTACTGCTTAGGG
1 TGCTTCTCCACTCTATTGGGAAGATAAGATTCACCATCTTCGATCTGAGCCACAACT-CTTAGGG
* * *
497099 TGACAGAATGTGCAATCTTCAGCCTACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAA
65 TGACAGAATCTGCAACCTTCAACCTACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAA
* * * * * * *
497164 TTTGCTTCTCCACTGTATTGGTAAGATAAGATTCACCATCTTTGATCTCCTCCAGTATTGCTTAG
130 TCTGCTTCTCCACTGTATTGGGAAGATAAAATTCACCATCTTCGATCTCATCCACTACTGCTTAG
497229 GGTGA
195 GGTGA
497234 CAAAATCTGC
Statistics
Matches: 179, Mismatches: 20, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
219 52 0.29
220 127 0.71
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (219 bp):
TGCTTCTCCACTCTATTGGGAAGATAAGATTCACCATCTTCGATCTGAGCCACAACTCTTAGGGT
GACAGAATCTGCAACCTTCAACCTACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAAT
CTGCTTCTCCACTGTATTGGGAAGATAAAATTCACCATCTTCGATCTCATCCACTACTGCTTAGG
GTGATAGGACTAATGGCTTAAATT
Found at i:497226 original size:132 final size:131
Alignment explanation
Indices: 496994--498277 Score: 1640
Period size: 132 Copynumber: 9.7 Consensus size: 131
496984 TTCGATCTGA
*
496994 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATTTGCTTCTCCACTGTATTGGTAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG-AAGAT
* * *
497059 AAGATTCACCATCTTCGATCTGATCCACTACTGCTTAGGGTGACAGAATGTGCAATCTTCAGCCT
65 AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
497124 AC
130 AC
* * *
497126 ACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATTTGCTTCTCCACTGTATTGGTAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG-AAGAT
* * * * * *
497191 AAGATTCACCATCTTTGATCTCCTCCAGTATTGCTTAGGGTGACAAAATCTGCAATCCTCAACCT
65 AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
497256 AC
130 AC
* * *
497258 ACCACTACTTCTTAGGGTGATAGGGA-TAATGGCTTATATCTGCTTCTCCACTGTATTGGAAAGA
1 TCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG-AAGA
* * * * * * * * *
497322 TAACATCCATCATATTCGATCTGCTCCACTACTGTTTAGGTTGACAAAATCTGCAGTCTTTAACC
64 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
497387 TAC
129 TAC
* * *
497390 TCCACTACTGCTCT-GGGAGATAGGACTAATGGCTTAAATCTACTTCTCCTCTGTATTTGGAAGA
1 TCCACTACTGCT-TAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA-TTGGAAGA
* * * *
497454 CAAGATTCACCATCTTCGATCTACTTCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACC
64 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
497519 TAC
129 TAC
* * * * * * *
497522 TCCACTACAGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTCAGAAGAG
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT-GGAAGAT
** * * * *
497587 AAGATTCACCATCTTCGATCCACTCTACAACTGCTTAGGGTAACAGAATCTGTAATCTTCAACCT
65 AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
497652 AC
130 AC
* * * * *
497654 TCCAATACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTCAGAAGAG
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT-GGAAGAT
** * * * *
497719 AAGATTCACCATCTTCGATCCACTCTACAACTGCTTAGGGTAACAGAATATGCAATCTTCAACCT
65 AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
497784 AC
130 AC
*
497786 TCCACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT-GGAAGAT
* * * *
497851 AAGATTCACCATCTTC-ATTCTGCTCCACTACTACTTAGGGTAACAGAATCCGCAATCTTTAACC
65 AAGATTCACCATCTTCGA-TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
*
497915 GAC
129 TAC
* * * *
497918 TCCACTACTTCTTAGGGTAATAGGACTAATGGCTTAAATCTGCTTGTCCACTCTATTAGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT-GGAAGAT
* * * * *
497983 AAGATTTACCATTTTCGATCTACTCCAGTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCG
65 AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
498048 AC
130 AC
* *
498050 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAATCTGCTTGTCCACTGTATTGGGAAAA
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTT-AAATCTGCTTCTCCACTGTATT-GGAAGA
* * * * * *
498115 TAAGATTCATCATATTTGATCTGCTTCACTACTGTTTAGGGTGACAGAATCTGCAATCTTTAACC
64 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
*
498180 AAC
129 TAC
* * **
498183 TCCACCA-TGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTCAATTGGGAAGA
1 TCCACTACT-GCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT-GGAAGA
*
498247 TAAGATTCACCATCTTCGATTTGCTCCACTA
64 TAAGATTCACCATCTTCGATCTGCTCCACTA
Statistics
Matches: 1019, Mismatches: 123, Indels: 20
0.88 0.11 0.02
Matches are distributed among these distances:
131 7 0.01
132 888 0.87
133 124 0.12
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (131 bp):
TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGAAGATA
AGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
C
Done.