Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4685

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 300

Length: 501
ACGTcount: A:0.28, C:0.03, G:0.27, T:0.42


Found at i:356 original size:21 final size:20

Alignment explanation


    Indices: 324--364  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 20

        314 TTAAGGACTA

                   *            
        324 GGGATTATGGTTTAAGGGTT
          1 GGGATTAAGGTTTAAGGGTT

                           *     
        344 GGGATTTAAGGTTTATGGGTT
          1 GGGA-TTAAGGTTTAAGGGTT

        365 AGGGGTTAGG


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  20    4  0.22
  21   14  0.78

ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41


Consensus pattern (20 bp):   
GGGATTAAGGTTTAAGGGTT
Done.