Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 20 of 79
Found at i:6721852 original size:18 final size:18
Alignment explanation
Indices: 6721829--6721868 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
6721819 GTTGAATTTT
6721829 ATAATTTGAATAAGTCAA
1 ATAATTTGAATAAGTCAA
*
6721847 ATAATTTGAATAATTCAA
1 ATAATTTGAATAAGTCAA
6721865 ATAA
1 ATAA
6721869 AAAATTGGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (18 bp):
ATAATTTGAATAAGTCAA
Found at i:6728107 original size:37 final size:38
Alignment explanation
Indices: 6728045--6728136 Score: 109
Period size: 38 Copynumber: 2.5 Consensus size: 38
6728035 CTTGGTTCCA
* *
6728045 CATATTGTGGTGT--AGGGTGGATGGACCTATCAT-GGT
1 CATA-TGTGGTGTGCAGGGCGGATGGACCTATCATAGCT
* * *
6728081 CCTATGTGGTGTGCAGGGCGGATGGACTTATTATAGCT
1 CATATGTGGTGTGCAGGGCGGATGGACCTATCATAGCT
6728119 CATATGTGGTGTGCAGGG
1 CATATGTGGTGTGCAGGG
6728137 TTGTCGAAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
35 8 0.17
36 3 0.06
37 17 0.36
38 19 0.40
ACGTcount: A:0.18, C:0.13, G:0.37, T:0.32
Consensus pattern (38 bp):
CATATGTGGTGTGCAGGGCGGATGGACCTATCATAGCT
Found at i:6736096 original size:18 final size:18
Alignment explanation
Indices: 6736073--6736108 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
6736063 GGTAAGTTAT
6736073 TGAATTGAATTGTATGAG
1 TGAATTGAATTGTATGAG
6736091 TGAATTGAATTGTATGAG
1 TGAATTGAATTGTATGAG
6736109 CTTACTAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.28, T:0.39
Consensus pattern (18 bp):
TGAATTGAATTGTATGAG
Found at i:6744204 original size:23 final size:23
Alignment explanation
Indices: 6744178--6744262 Score: 125
Period size: 23 Copynumber: 3.7 Consensus size: 23
6744168 AAATTAGGTA
*
6744178 AAATTATGTTATGGTTTTTAAAT
1 AAATTAGGTTATGGTTTTTAAAT
*
6744201 AAATTATGTTATGGTTTTTAAAT
1 AAATTAGGTTATGGTTTTTAAAT
* *
6744224 AAATTAGGTTAGGGTTTTTAATT
1 AAATTAGGTTATGGTTTTTAAAT
*
6744247 AAATTAGGTTAAGGTT
1 AAATTAGGTTATGGTT
6744263 AGGGTTTTTA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.48
Consensus pattern (23 bp):
AAATTAGGTTATGGTTTTTAAAT
Found at i:6744263 original size:29 final size:29
Alignment explanation
Indices: 6744230--6745523 Score: 2570
Period size: 29 Copynumber: 44.6 Consensus size: 29
6744220 AAATAAATTA
*
6744230 GGTTAGGGTTTTTAATTAAATTAGGTTAA
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744259 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744288 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744317 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744346 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744375 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744404 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744433 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744462 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744491 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744520 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744549 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744578 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744607 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744636 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744665 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744694 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744723 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744752 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744781 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744810 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744839 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744868 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744897 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744926 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744955 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6744984 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745013 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745042 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745071 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745100 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745129 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745158 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745187 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745216 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745245 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745274 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745303 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745332 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745361 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745390 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745419 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
*
6745448 GGTTAGGGTTTTTAATTAAATTAGGGTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745477 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
6745506 GGTTAGGGTTTTTAATTA
1 GGTTAGGGTTTTTAATTA
6745524 CGATTTTTAT
Statistics
Matches: 1262, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 1262 1.00
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.45
Consensus pattern (29 bp):
GGTTAGGGTTTTTAATTAAATTAGGTTAG
Found at i:6747592 original size:32 final size:32
Alignment explanation
Indices: 6747551--6747619 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
6747541 GCCATTGATG
*
6747551 AAAATATAAAAAAAA-TTTAAAATTATTTTTAA
1 AAAATATAAAAAAAATTTTAAAATTA-TTTAAA
*
6747583 AAAATATAAAAAAAATTTTGAAATTATTTAAA
1 AAAATATAAAAAAAATTTTAAAATTATTTAAA
6747615 AAAAT
1 AAAAT
6747620 GAAATTGAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 25 0.74
33 9 0.26
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (32 bp):
AAAATATAAAAAAAATTTTAAAATTATTTAAA
Found at i:6747678 original size:22 final size:21
Alignment explanation
Indices: 6747653--6747703 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
6747643 TAATATGGAT
* *
6747653 TTGAGAGATTTTTGGAATGAAA
1 TTGAGAGA-TTTTGAAAGGAAA
6747675 TTGAGAGGATTTTGAAAGGAAA
1 TTGAGA-GATTTTGAAAGGAAA
6747697 TTGAGAG
1 TTGAGAG
6747704 TTTAAGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 1 0.04
22 23 0.88
23 2 0.08
ACGTcount: A:0.37, C:0.00, G:0.31, T:0.31
Consensus pattern (21 bp):
TTGAGAGATTTTGAAAGGAAA
Found at i:6747727 original size:52 final size:52
Alignment explanation
Indices: 6747656--6747754 Score: 171
Period size: 52 Copynumber: 1.9 Consensus size: 52
6747646 TATGGATTTG
* *
6747656 AGAGATTTTTGGAATGAAATTGAGAGGATTTTGAAAGGAAATTGAGAGTTTA
1 AGAGAATTTTGGAAGGAAATTGAGAGGATTTTGAAAGGAAATTGAGAGTTTA
*
6747708 AGAGAATTTTGGAAGGAAATTGAGAGGATTTTGGAAGGAAATTGAGA
1 AGAGAATTTTGGAAGGAAATTGAGAGGATTTTGAAAGGAAATTGAGA
6747755 TAGGATTTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.39, C:0.00, G:0.31, T:0.29
Consensus pattern (52 bp):
AGAGAATTTTGGAAGGAAATTGAGAGGATTTTGAAAGGAAATTGAGAGTTTA
Found at i:6747738 original size:22 final size:22
Alignment explanation
Indices: 6747708--6747754 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
6747698 TGAGAGTTTA
6747708 AGAGAATTTTGGAAGGAAATTG
1 AGAGAATTTTGGAAGGAAATTG
*
6747730 AGAGGATTTTGGAAGGAAATTG
1 AGAGAATTTTGGAAGGAAATTG
6747752 AGA
1 AGA
6747755 TAGGATTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.34, T:0.26
Consensus pattern (22 bp):
AGAGAATTTTGGAAGGAAATTG
Found at i:6755409 original size:11 final size:11
Alignment explanation
Indices: 6755393--6755428 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
6755383 CTTCATTCAT
*
6755393 ATCCCTCAATC
1 ATCCCTCAAGC
6755404 ATCCCTCAAGC
1 ATCCCTCAAGC
*
6755415 ATCCATCAAGC
1 ATCCCTCAAGC
6755426 ATC
1 ATC
6755429 ATTCTCTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.31, C:0.42, G:0.06, T:0.22
Consensus pattern (11 bp):
ATCCCTCAAGC
Found at i:6757149 original size:40 final size:40
Alignment explanation
Indices: 6757094--6757184 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
6757084 ATTTAGCCAC
*
6757094 ATGTGCAAACAGGGGTA-TCGAAGAATAAACAGTG-GCACGT
1 ATGTGCAAACAGGGGTACT-GAAGAACAAACAG-GAGCACGT
* *
6757134 ATGTGCAAATAGGGGTACTGAAGTACAAACAGGAGCACGT
1 ATGTGCAAACAGGGGTACTGAAGAACAAACAGGAGCACGT
6757174 ATGTGCAAACA
1 ATGTGCAAACA
6757185 TTCAATAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
39 1 0.02
40 43 0.96
41 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.29, T:0.18
Consensus pattern (40 bp):
ATGTGCAAACAGGGGTACTGAAGAACAAACAGGAGCACGT
Found at i:6757184 original size:20 final size:20
Alignment explanation
Indices: 6757128--6757184 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
6757118 ATAAACAGTG
* *
6757128 GCACGTATGTGCAAATAGGG
1 GCACGTATGTGCAAACAGGA
* * *
6757148 GTAC-TGAAGTACAAACAGGA
1 GCACGT-ATGTGCAAACAGGA
6757168 GCACGTATGTGCAAACA
1 GCACGTATGTGCAAACA
6757185 TTCAATAATT
Statistics
Matches: 27, Mismatches: 8, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
19 1 0.04
20 25 0.93
21 1 0.04
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.18
Consensus pattern (20 bp):
GCACGTATGTGCAAACAGGA
Found at i:6766379 original size:14 final size:16
Alignment explanation
Indices: 6766360--6766393 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
6766350 ATTAAAAATG
6766360 ATAAAATA-TATTT-A
1 ATAAAATATTATTTGA
6766374 ATAAAATATTATTTGA
1 ATAAAATATTATTTGA
6766390 ATAA
1 ATAA
6766394 TATTTAGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
15 5 0.28
16 5 0.28
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (16 bp):
ATAAAATATTATTTGA
Found at i:6771500 original size:15 final size:15
Alignment explanation
Indices: 6771480--6771513 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
6771470 GACATTATGA
*
6771480 ATTTCTGGTGATGTC
1 ATTTCTGGTGATGCC
*
6771495 ATTTCTTGTGATGCC
1 ATTTCTGGTGATGCC
6771510 ATTT
1 ATTT
6771514 GGATTAACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.15, G:0.21, T:0.50
Consensus pattern (15 bp):
ATTTCTGGTGATGCC
Found at i:6776405 original size:2 final size:2
Alignment explanation
Indices: 6776398--6776424 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6776388 TAAACAAATG
6776398 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
6776425 TTGTGTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6776917 original size:252 final size:252
Alignment explanation
Indices: 6776472--6776965 Score: 988
Period size: 252 Copynumber: 2.0 Consensus size: 252
6776462 TTTGTGCACA
6776472 CCTGTACGGACTGATTACTGATGATTACCAAGATCCAACATTTGTTGCGGACTTGAAGATACATG
1 CCTGTACGGACTGATTACTGATGATTACCAAGATCCAACATTTGTTGCGGACTTGAAGATACATG
6776537 TGACACAAGTTTAGCCTGGACTGGTAACCTTGCATGTATAATTTCAACTTGGCCAAGAAATTGAA
66 TGACACAAGTTTAGCCTGGACTGGTAACCTTGCATGTATAATTTCAACTTGGCCAAGAAATTGAA
6776602 TGTTTCATTAAAGGTTTAGCCTGAACTGGTAACTTGGCACGAATATGTATTCAGCTCAGGCAAGC
131 TGTTTCATTAAAGGTTTAGCCTGAACTGGTAACTTGGCACGAATATGTATTCAGCTCAGGCAAGC
6776667 AATTATTGTACCAGAGATACTTGTGTATCCAAGTCCATTTACTAGAGAGGATTTGTG
196 AATTATTGTACCAGAGATACTTGTGTATCCAAGTCCATTTACTAGAGAGGATTTGTG
6776724 CCTGTACGGACTGATTACTGATGATTACCAAGATCCAACATTTGTTGCGGACTTGAAGATACATG
1 CCTGTACGGACTGATTACTGATGATTACCAAGATCCAACATTTGTTGCGGACTTGAAGATACATG
6776789 TGACACAAGTTTAGCCTGGACTGGTAACCTTGCATGTATAATTTCAACTTGGCCAAGAAATTGAA
66 TGACACAAGTTTAGCCTGGACTGGTAACCTTGCATGTATAATTTCAACTTGGCCAAGAAATTGAA
6776854 TGTTTCATTAAAGGTTTAGCCTGAACTGGTAACTTGGCACGAATATGTATTCAGCTCAGGCAAGC
131 TGTTTCATTAAAGGTTTAGCCTGAACTGGTAACTTGGCACGAATATGTATTCAGCTCAGGCAAGC
6776919 AATTATTGTACCAGAGATACTTGTGTATCCAAGTCCATTTACTAGAG
196 AATTATTGTACCAGAGATACTTGTGTATCCAAGTCCATTTACTAGAG
6776966 TTCATCAAGC
Statistics
Matches: 242, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
252 242 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (252 bp):
CCTGTACGGACTGATTACTGATGATTACCAAGATCCAACATTTGTTGCGGACTTGAAGATACATG
TGACACAAGTTTAGCCTGGACTGGTAACCTTGCATGTATAATTTCAACTTGGCCAAGAAATTGAA
TGTTTCATTAAAGGTTTAGCCTGAACTGGTAACTTGGCACGAATATGTATTCAGCTCAGGCAAGC
AATTATTGTACCAGAGATACTTGTGTATCCAAGTCCATTTACTAGAGAGGATTTGTG
Found at i:6783252 original size:17 final size:18
Alignment explanation
Indices: 6783230--6783263 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6783220 ACAATGAGCA
6783230 AATTTTCCATTT-TAATC
1 AATTTTCCATTTATAATC
*
6783247 AATTTTTCATTTATAAT
1 AATTTTCCATTTATAAT
6783264 AAATCATTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (18 bp):
AATTTTCCATTTATAATC
Found at i:6784440 original size:28 final size:26
Alignment explanation
Indices: 6784377--6784440 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 26
6784367 TTAAATGTCA
* *
6784377 TTTTTAAAAATATTACAGAAATAGAC
1 TTTTTAAAAATATTACAAAAATAAAC
*
6784403 TATTTTTAAAAATATTTATAAAAATAAAC
1 --TTTTTAAAAATA-TTACAAAAATAAAC
6784432 TTTTATAAA
1 TTTT-TAAA
6784441 GACCCAAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 4 0.13
28 16 0.52
29 11 0.35
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.41
Consensus pattern (26 bp):
TTTTTAAAAATATTACAAAAATAAAC
Found at i:6785102 original size:6 final size:6
Alignment explanation
Indices: 6785091--6785135 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
6785081 GTATGGATGA
6785091 AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT AA-TTT AATT
1 AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT AATT
6785136 ATGCATATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 5 0.13
6 33 0.87
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
AATTTT
Found at i:6786643 original size:18 final size:19
Alignment explanation
Indices: 6786611--6786648 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
6786601 ATAAAATGGA
* *
6786611 AAAATGTATATGTAT-TAT
1 AAAATGTAAACGTATATAT
6786629 AAAATGTAAACGTATATAT
1 AAAATGTAAACGTATATAT
6786648 A
1 A
6786649 TAAACTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.50, C:0.03, G:0.11, T:0.37
Consensus pattern (19 bp):
AAAATGTAAACGTATATAT
Found at i:6786647 original size:26 final size:26
Alignment explanation
Indices: 6786585--6786634 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
6786575 TATGTATGTG
*
6786585 AAAATATGTATGAATTATAAAATGGA
1 AAAATATATATGAATTATAAAATGGA
* *
6786611 AAAATGTATATGTATTATAAAATG
1 AAAATATATATGAATTATAAAATG
6786635 TAAACGTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (26 bp):
AAAATATATATGAATTATAAAATGGA
Found at i:6786787 original size:3 final size:3
Alignment explanation
Indices: 6786779--6786812 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
6786769 GTATATATGT
6786779 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
6786813 CAAAAATAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:6788737 original size:3 final size:3
Alignment explanation
Indices: 6788729--6788753 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6788719 CTTTTTTAAA
6788729 ACT ACT ACT ACT ACT ACT ACT ACT A
1 ACT ACT ACT ACT ACT ACT ACT ACT A
6788754 TTATTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ACT
Found at i:6788758 original size:3 final size:3
Alignment explanation
Indices: 6788752--6788790 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
6788742 CTACTACTAC
6788752 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6788791 CAATGGATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:6795637 original size:21 final size:22
Alignment explanation
Indices: 6795585--6795637 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
6795575 ACCACTGTTT
*
6795585 CTAATCTCA-CTGCTACAGTAT
1 CTAATCTCACCTGCTACAGTAA
*
6795606 CCAATCTCACCT-CTACAGTAA
1 CTAATCTCACCTGCTACAGTAA
6795627 CTAATCTCACC
1 CTAATCTCACC
6795638 GCCACCGCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.30, C:0.36, G:0.06, T:0.28
Consensus pattern (22 bp):
CTAATCTCACCTGCTACAGTAA
Found at i:6805545 original size:92 final size:93
Alignment explanation
Indices: 6805426--6805611 Score: 365
Period size: 92 Copynumber: 2.0 Consensus size: 93
6805416 AATATATACT
6805426 TGAAACTTTAATTTTGATTTAATCATACACATTTAAATAAATAATCATCAATTTATTTTTATATT
1 TGAAACTTTAATTTTGATTTAATCATACACATTTAAATAAATAATCATCAATTTATTTTTATATT
6805491 GAATAAATATAAATATTTATGTATGCAA
66 GAATAAATATAAATATTTATGTATGCAA
6805519 TGAAACTTTAA-TTTGATTTAATCATACACATTTAAATAAATAATCATCAATTTATTTTTATATT
1 TGAAACTTTAATTTTGATTTAATCATACACATTTAAATAAATAATCATCAATTTATTTTTATATT
6805583 GAATAAATATAAATATTTATGTATGCAA
66 GAATAAATATAAATATTTATGTATGCAA
6805611 T
1 T
6805612 ATATAAACAT
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
92 82 0.88
93 11 0.12
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.44
Consensus pattern (93 bp):
TGAAACTTTAATTTTGATTTAATCATACACATTTAAATAAATAATCATCAATTTATTTTTATATT
GAATAAATATAAATATTTATGTATGCAA
Found at i:6806434 original size:17 final size:17
Alignment explanation
Indices: 6806412--6806448 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
6806402 AACCAAACAT
* *
6806412 AAAAATTGATTAAATAA
1 AAAAATTAAATAAATAA
6806429 AAAAATTAAATAAATAA
1 AAAAATTAAATAAATAA
6806446 AAA
1 AAA
6806449 TGAATCAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
AAAAATTAAATAAATAA
Found at i:6807265 original size:22 final size:20
Alignment explanation
Indices: 6807216--6807261 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
6807206 AACAAAATTT
6807216 TATATAAATACACCTTAAAA
1 TATATAAATACACCTTAAAA
* * *
6807236 AATATAAATATACCTTCAAA
1 TATATAAATACACCTTAAAA
6807256 TATATA
1 TATATA
6807262 TAAACTATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (20 bp):
TATATAAATACACCTTAAAA
Found at i:6809258 original size:13 final size:14
Alignment explanation
Indices: 6809240--6809272 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
6809230 GGAAAATTAC
6809240 TTTTGAGAAGTG-T
1 TTTTGAGAAGTGCT
6809253 TTTTGAGAAGTGCT
1 TTTTGAGAAGTGCT
6809267 TTTTGA
1 TTTTGA
6809273 AAAATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.21, C:0.03, G:0.27, T:0.48
Consensus pattern (14 bp):
TTTTGAGAAGTGCT
Found at i:6813209 original size:45 final size:45
Alignment explanation
Indices: 6813154--6813251 Score: 153
Period size: 45 Copynumber: 2.2 Consensus size: 45
6813144 ACAGTAGCAG
*
6813154 TAACAGTAACAGTATTCAACACACAAAGTG-CTGAATCTGTAACAA
1 TAACAGTAACAGTATTCAACACACAAAGTGTC-GAATCGGTAACAA
* *
6813199 TAACGGTAACAGTATTCAACACACAAAGTGTCGAATCGGTAACAG
1 TAACAGTAACAGTATTCAACACACAAAGTGTCGAATCGGTAACAA
6813244 TAACAGTA
1 TAACAGTA
6813252 GTCGGCATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 47 0.98
46 1 0.02
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.21
Consensus pattern (45 bp):
TAACAGTAACAGTATTCAACACACAAAGTGTCGAATCGGTAACAA
Found at i:6813497 original size:40 final size:41
Alignment explanation
Indices: 6813451--6813538 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 41
6813441 AATTCATTAC
* * *
6813451 TTCAGTAATTTCACAGTTCAATGCAGTACAC-ATAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTACACAAAAACAATA
** *
6813491 TTCAGTAACTTCACAATTCAATTTAGTACTCAAAAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTACACAAAAACAATA
6813532 TTCAGTA
1 TTCAGTA
6813539 TTCCATAATG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
40 26 0.63
41 15 0.37
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (41 bp):
TTCAGTAACTTCACAATTCAATGCAGTACACAAAAACAATA
Found at i:6814273 original size:34 final size:35
Alignment explanation
Indices: 6814229--6814295 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
6814219 CAGTAAAATA
*
6814229 TTTTCCGTAAAATGATTT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
*
6814263 TTTTCTGTAAAATGATTTACTGAAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTT
6814296 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.34, C:0.09, G:0.10, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
Found at i:6818745 original size:20 final size:18
Alignment explanation
Indices: 6818704--6818746 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
6818694 AAATATATAT
*
6818704 AATATATGATATATTTAA
1 AATATATGATATATTCAA
*
6818722 AATATATGGAATATATTCAC
1 AATATAT-G-ATATATTCAA
6818742 AATAT
1 AATAT
6818747 CCAATGTAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 7 0.33
19 1 0.05
20 13 0.62
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.40
Consensus pattern (18 bp):
AATATATGATATATTCAA
Found at i:6822248 original size:24 final size:24
Alignment explanation
Indices: 6822215--6822261 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
6822205 ATTTGTAAAT
6822215 GGGCTAATTGGGTTTAGTTTGTTG
1 GGGCTAATTGGGTTTAGTTTGTTG
*
6822239 GGGCTGATTGGGTTTAGTTTGTT
1 GGGCTAATTGGGTTTAGTTTGTT
6822262 TGGGTTATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.11, C:0.04, G:0.38, T:0.47
Consensus pattern (24 bp):
GGGCTAATTGGGTTTAGTTTGTTG
Found at i:6823528 original size:175 final size:175
Alignment explanation
Indices: 6823054--6823847 Score: 1283
Period size: 175 Copynumber: 4.5 Consensus size: 175
6823044 TACTCTACTG
*
6823054 TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATTT
1 TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
6823119 GCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAGG
66 GCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAGG
*
6823184 GAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGCGA
131 GAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGA
* *
6823229 TAAGATCCTTGGTTTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATT
1 TAAGATCCTTGG-TTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATC
* *
6823294 TGCTCCACTGTAATCTCAAGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATTAG
65 TGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAG
6823359 GGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGA
130 GGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGA
*
6823405 TAAGATCCTTGGTTTTAATCCGCTCCACTGCAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
1 TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
* *
6823470 ACTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGG
66 GCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAGG
6823535 GAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGA
131 GAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGA
****************
6823580 T-A-A-NNNNNNNNNNNNNNNNCTCCACTGTAATCTCAGGGAGATAGGGATTACTAGC-TCAATC
1 TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATA-GGATTACTAGCTTCAATC
*
6823641 TGCTCCACTGTAATCTCAAGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAG
65 TGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAG
6823706 GGAAATAAGGA-CTGGTGCGATCTACTCTACTGTAACTTCAGAGAGA
130 GGAAATAA-GACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGA
6823752 TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
1 TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
*
6823817 ACTCCACTGTAATCTCAGGGAGATAAGATCT
66 GCTCCACTGTAATCTCAGGGAGATAAGATCT
6823848 CTGGCTTCAA
Statistics
Matches: 563, Mismatches: 49, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
172 135 0.24
173 15 0.03
174 13 0.02
175 229 0.41
176 171 0.30
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (175 bp):
TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
GCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAGG
GAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGA
Found at i:6823789 original size:347 final size:350
Alignment explanation
Indices: 6823054--6823847 Score: 1319
Period size: 347 Copynumber: 2.3 Consensus size: 350
6823044 TACTCTACTG
*
6823054 TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATTT
1 TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
*
6823119 GCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAGG
66 ACTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAGG
*
6823184 GAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTGGTTTTTAAT
131 GAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGA-CCTTGGTTTTTAAT
*
6823249 CCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATTTGCTCCACTGTAATCTCAAG
195 CCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAAG
*
6823314 GAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATTAGGGAAATAAGACCTGGTGCGA
260 GAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAGGGAAATAAGACCTGGTGCGA
6823379 TCTACTCTACTGTAACTTCAGAGAGA
325 TCTACTCTACTGTAACTTCAGAGAGA
*
6823405 TAAGATCCTTGGTTTTAATCCGCTCCACTGCAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
1 TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
*
6823470 ACTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGG
66 ACTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAGG
**************
6823535 GAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGAT-A-A-NNNNNNNNNNNNNN
131 GAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGACCTTGGTTTTTAATC
**
6823597 NNCTCCACTGTAATCTCAGGGAGATAGGGATTACTAGC-TCAATCTGCTCCACTGTAATCTCAAG
196 CACTCCACTGTAATCTCAGGGAGATA-GGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAAG
6823661 GAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAGGGAAATAAGGA-CTGGTGCG
260 GAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAGGGAAATAA-GACCTGGTGCG
6823725 ATCTACTCTACTGTAACTTCAGAGAGA
324 ATCTACTCTACTGTAACTTCAGAGAGA
6823752 TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
1 TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
6823817 ACTCCACTGTAATCTCAGGGAGATAAGATCT
66 ACTCCACTGTAATCTCAGGGAGATAAGATCT
6823848 CTGGCTTCAA
Statistics
Matches: 417, Mismatches: 24, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
347 231 0.55
348 13 0.03
349 1 0.00
350 1 0.00
351 171 0.41
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (350 bp):
TAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
ACTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAGG
GAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGACCTTGGTTTTTAATC
CACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAAGG
AGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATATCAGGGAAATAAGACCTGGTGCGAT
CTACTCTACTGTAACTTCAGAGAGA
Found at i:6823861 original size:44 final size:45
Alignment explanation
Indices: 6823070--6823860 Score: 296
Period size: 44 Copynumber: 18.1 Consensus size: 45
6823060 CCTTGGTTTT
* * *
6823070 AATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTACTGGCTTC
* * *
6823114 AATTTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAAT-TCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT--ACTGGCTTC
** * * * *
6823160 GGTCTGTTCCACTGTAATATCAGGGAAATAAGA-C--CTGG-TGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTACTGGCTTC
* * * * * * *
6823201 GATCTACTCTACTGTAA-CTTCAGAGCGATAAGATC--CTTGGTTTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTAC-TGG-CTTC
** * *
6823246 AATCCACTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTACTGGCTTC
* * * *
6823290 AATTTGCTCCACTGTAATCTCAAGGAGATAAGATCTGAAAT-TCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT--ACTGGCTTC
** * * * * *
6823336 GGTCTGTTCCACTGTAATATTAGGGAAATAAGA-C--CTGG-TGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTACTGGCTTC
* * * * * *
6823377 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATC--CTTGGTTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTAC-TGGCTTC
* * * *
6823421 AATCCGCTCCACTGCAATCTCAGGGAGATAGGAT-TACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTACTGGCTTC
* * *
6823465 AATCTACTCCACTGTAATCTCAGGGAGATAAGATCTGAAAT-TCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT--ACTGGCTTC
** * * *
6823511 GGTCTGTTCCACTGTAATCTCAGGGAAATAAGA-C--CTGG-TGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTACTGGCTTC
* * * * **********
6823552 GATCTACTCTACTGTAA-CTTCAGAGAGAT-A-A--NNNNNNNNNN
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTACTGGCTTC
****** * *
6823593 NNNNNNCTCCACTGTAATCTCAGGGAGATAGGGAT-TACTAGC-TC
1 AATCTGCTCCACTGTAATCTCAGGGAGATA-AGATCTACTGGCTTC
* * *
6823637 AATCTGCTCCACTGTAATCTCAAGGAGATAAGATCTGAAAT-TCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT--ACTGGCTTC
** * * * * *
6823683 GGTCTGTTCCACTGTAATATCAGGGAAATAAG---GACTGG-TGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTACTGGCTTC
* * * * * *
6823724 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATC--CTTGGTTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTAC-TGGCTTC
* * *
6823768 AATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTACTGGCTTC
*
6823812 AATCTACTCCACTGTAATCTCAGGGAGATAAGATCT-CTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTACTGGCTTC
6823856 AATCT
1 AATCT
6823861 AATGTGATCT
Statistics
Matches: 538, Mismatches: 158, Indels: 102
0.67 0.20 0.13
Matches are distributed among these distances:
39 1 0.00
40 2 0.00
41 125 0.23
42 6 0.01
43 12 0.02
44 221 0.41
45 41 0.08
46 124 0.23
47 6 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.29
Consensus pattern (45 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTACTGGCTTC
Found at i:6827394 original size:46 final size:45
Alignment explanation
Indices: 6827327--6827679 Score: 219
Period size: 46 Copynumber: 8.1 Consensus size: 45
6827317 NNNNNNNNNN
* *
6827327 CTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCGATCTGCTCCA
* * * * *
6827373 CTGTAATCTCAGGGAAATAAGACCTG-A--C-GCGATCTACTCTA
1 CTGTAATCTCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCA
* * * *
6827414 CTGTAA-CTTCAGAGAGATAAGATCATTG-GTT-TT-AATCCGCTCCA
1 CTGTAATC-TCAGGGAGATAAGATC--TGAATTCTTCGATCTGCTCCA
* * **
6827458 CTGTAATCTCAGGGAGATAGGAT-T-ACCA-TCTTTGATCTGCTCTG
1 CTGTAATCTCAGGGAGATAAGATCTGA--ATTCTTCGATCTGCTCCA
* *
6827502 CTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCGATCTGCTCCA
* * * * *
6827548 CTGTAATCTCAGGGAAATAAGACCTG-A--C-GCGATCTACTCTA
1 CTGTAATCTCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCA
* * *
6827589 CTGTAA-CTTCAGAGAGATAAGATC---A-T-TT-AATCCGCTCCA
1 CTGTAATC-TCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCA
* *
6827628 CTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCGATCTGCTCCA
*
6827674 CCGTAA
1 CTGTAA
6827680 AATAAGACCT
Statistics
Matches: 230, Mismatches: 50, Indels: 54
0.69 0.15 0.16
Matches are distributed among these distances:
39 29 0.13
40 3 0.01
41 55 0.24
42 3 0.01
43 5 0.02
44 58 0.25
45 5 0.02
46 71 0.31
47 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (45 bp):
CTGTAATCTCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCA
Found at i:6829682 original size:12 final size:13
Alignment explanation
Indices: 6829665--6829695 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6829655 TTGACCTCTC
6829665 CTTTTTC-TTTTT
1 CTTTTTCTTTTTT
6829677 CTTTTTCTTTTTT
1 CTTTTTCTTTTTT
6829690 CTTTTT
1 CTTTTT
6829696 TTTCTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
CTTTTTCTTTTTT
Found at i:6829705 original size:7 final size:6
Alignment explanation
Indices: 6829665--6829695 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
6829655 TTGACCTCTC
6829665 CTTTTT CTTTTT CTTTTT CTTTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT C-TTTTT CTTTTT
6829696 TTTCTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
CTTTTT
Found at i:6829722 original size:9 final size:9
Alignment explanation
Indices: 6829710--6829782 Score: 68
Period size: 9 Copynumber: 8.3 Consensus size: 9
6829700 TATTTTTGAC
6829710 TTTGATTTT
1 TTTGATTTT
6829719 TTTG--TTT
1 TTTGATTTT
6829726 TTT-A--TT
1 TTTGATTTT
6829732 TTTGATTTTATT
1 TTTGA--TT-TT
6829744 TTTGATTTT
1 TTTGATTTT
6829753 TTTGATTTT
1 TTTGATTTT
6829762 TTTGA-TTT
1 TTTGATTTT
6829770 TTTGAATTTT
1 TTTG-ATTTT
6829780 TTT
1 TTT
6829783 TTGAGTCTGA
Statistics
Matches: 55, Mismatches: 0, Indels: 17
0.76 0.00 0.24
Matches are distributed among these distances:
6 5 0.09
7 7 0.13
8 7 0.13
9 21 0.38
10 8 0.15
12 7 0.13
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (9 bp):
TTTGATTTT
Found at i:6829726 original size:28 final size:26
Alignment explanation
Indices: 6829691--6829746 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
6829681 TTCTTTTTTC
6829691 TTTTTTTTCTATTTTTGACTTTGATTT
1 TTTTTTTTCTATTTTTGA-TTTGATTT
* *
6829718 TTTTGTTTTTTATTTTTGATTTTATTT
1 TTTT-TTTTCTATTTTTGATTTGATTT
6829745 TT
1 TT
6829747 GATTTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.11, C:0.04, G:0.07, T:0.79
Consensus pattern (26 bp):
TTTTTTTTCTATTTTTGATTTGATTT
Found at i:6829753 original size:34 final size:37
Alignment explanation
Indices: 6829710--6829786 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 37
6829700 TATTTTTGAC
6829710 TTTGATTTTTTTG-TTTTTT-A-TTTTTG-ATTTTATT
1 TTTGATTTTTTTGATTTTTTGATTTTTTGAATTTT-TT
6829744 TTTGATTTTTTTGATTTTTTTGATTTTTTGAATTTTTT
1 TTTGATTTTTTTGA-TTTTTTGATTTTTTGAATTTTTT
6829782 TTTGA
1 TTTGA
6829787 GTCTGAACTC
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
34 13 0.34
36 6 0.16
37 1 0.03
38 13 0.34
39 5 0.13
ACGTcount: A:0.13, C:0.00, G:0.10, T:0.77
Consensus pattern (37 bp):
TTTGATTTTTTTGATTTTTTGATTTTTTGAATTTTTT
Found at i:6829764 original size:12 final size:12
Alignment explanation
Indices: 6829715--6829786 Score: 58
Period size: 12 Copynumber: 5.8 Consensus size: 12
6829705 TTGACTTTGA
*
6829715 TTTTTTTGTTTT
1 TTTTTTTGATTT
6829727 TTATTTTTGATTT
1 TT-TTTTTGATTT
*
6829740 TATTTTTGATTT
1 TTTTTTTGATTT
6829752 TTTTGATTT--TTT
1 TTTT--TTTGATTT
*
6829764 TGATTTTTTGAATT
1 T--TTTTTTGATTT
6829778 TTTTTTTGA
1 TTTTTTTGA
6829787 GTCTGAACTC
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
12 30 0.61
13 10 0.20
14 9 0.18
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (12 bp):
TTTTTTTGATTT
Found at i:6832195 original size:30 final size:30
Alignment explanation
Indices: 6832138--6832199 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
6832128 GCTTTTCAAA
* * *
6832138 AATATTTACAAAATGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
6832168 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
6832198 AA
1 AA
6832200 AAATAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:6834592 original size:50 final size:50
Alignment explanation
Indices: 6834517--6834616 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
6834507 TGTTTCAACA
6834517 CCAGGATGAGTTTCTCTTCTTGCTCAGTGGCTAATTTTGCTGAAACAATC
1 CCAGGATGAGTTTCTCTTCTTGCTCAGTGGCTAATTTTGCTGAAACAATC
6834567 CCAGGATGAGTTTCTCTTCTTGCTCAGTGGCTAATTTTGCTGAAACAATC
1 CCAGGATGAGTTTCTCTTCTTGCTCAGTGGCTAATTTTGCTGAAACAATC
6834617 ACTGGCATAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (50 bp):
CCAGGATGAGTTTCTCTTCTTGCTCAGTGGCTAATTTTGCTGAAACAATC
Found at i:6843968 original size:71 final size:71
Alignment explanation
Indices: 6843889--6844048 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
6843879 TAAAACAGTT
* ** * *
6843889 CAGTCATCAAACAAGGACTAATCTGAATAAATTACAAAAATTCTAGGTTAAAATTGTAAATTTTG
1 CAGTCATCAAACAAGGACTAATCTGAACAAATTACAAAAATTCTAGGGCAAAATTATAAACTTTG
6843954 AGTACA
66 AGTACA
* *
6843960 CAGTCATCAAACAAGGACTAATCTGAACAAATTACAAAAATTTTGGGGCAAAATTATAAACTTTG
1 CAGTCATCAAACAAGGACTAATCTGAACAAATTACAAAAATTCTAGGGCAAAATTATAAACTTTG
6844025 AGTACA
66 AGTACA
6844031 CAGTCATCAAACAAGGAC
1 CAGTCATCAAACAAGGAC
6844049 CGTGTGATCG
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 82 1.00
ACGTcount: A:0.45, C:0.16, G:0.14, T:0.26
Consensus pattern (71 bp):
CAGTCATCAAACAAGGACTAATCTGAACAAATTACAAAAATTCTAGGGCAAAATTATAAACTTTG
AGTACA
Found at i:6870234 original size:31 final size:31
Alignment explanation
Indices: 6870167--6870235 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
6870157 ATCCAATGCT
* *
6870167 CAAATC-AATTCGACAATATATATCCATATA
1 CAAATCAAATTCGAAAATATATATCCACATA
* * * *
6870197 CGAATCAAATTCGAAAATTTATATCTACATG
1 CAAATCAAATTCGAAAATATATATCCACATA
6870228 CAAATCAA
1 CAAATCAA
6870236 TGTATATCCA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
30 5 0.16
31 26 0.84
ACGTcount: A:0.46, C:0.19, G:0.06, T:0.29
Consensus pattern (31 bp):
CAAATCAAATTCGAAAATATATATCCACATA
Found at i:6870284 original size:52 final size:53
Alignment explanation
Indices: 6870180--6870287 Score: 137
Period size: 52 Copynumber: 2.1 Consensus size: 53
6870170 ATCAATTCGA
* * * *
6870180 CAATATATATCCATATACGAATCAAATTCGAAAATTTATATCTACATGCAAAT
1 CAATATATATCCATATACGAAACAAATTCGAAAATTTATAACCACATACAAAT
* ** *
6870233 CAATGTATATCCATATAC-AAACAAATTCGGCAATTTATAACCATATACAAAT
1 CAATATATATCCATATACGAAACAAATTCGAAAATTTATAACCACATACAAAT
6870285 CAA
1 CAA
6870288 ATTTGGCAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
52 30 0.64
53 17 0.36
ACGTcount: A:0.46, C:0.19, G:0.06, T:0.30
Consensus pattern (53 bp):
CAATATATATCCATATACGAAACAAATTCGAAAATTTATAACCACATACAAAT
Found at i:6870296 original size:31 final size:31
Alignment explanation
Indices: 6870233--6870364 Score: 167
Period size: 31 Copynumber: 4.3 Consensus size: 31
6870223 ACATGCAAAT
6870233 CAATGTATATCCATATACAAA-CAAATTCGG
1 CAATGTATATCCATATACAAATCAAATTCGG
* * *
6870263 CAATTTATAACCATATACAAATCAAATTTGG
1 CAATGTATATCCATATACAAATCAAATTCGG
* * *
6870294 CAATGTATATCTATAAACAATTCAAATTCGG
1 CAATGTATATCCATATACAAATCAAATTCGG
** * *
6870325 CAATGTATATCTTTATAAAAATCAAATTCGA
1 CAATGTATATCCATATACAAATCAAATTCGG
6870356 CAATGTATA
1 CAATGTATA
6870365 AAACATATAC
Statistics
Matches: 87, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
30 19 0.22
31 68 0.78
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (31 bp):
CAATGTATATCCATATACAAATCAAATTCGG
Found at i:6884892 original size:37 final size:37
Alignment explanation
Indices: 6884842--6884916 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
6884832 TTTTACGGTT
*
6884842 GACGGAGGAGTTCCGTAGAGTACTGGCGGCATATTAA
1 GACGGAGAAGTTCCGTAGAGTACTGGCGGCATATTAA
6884879 GACGGAGAAGTTCCGTAGAGTACTGGCGGCATATTAA
1 GACGGAGAAGTTCCGTAGAGTACTGGCGGCATATTAA
6884916 G
1 G
6884917 TTCGCATTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.28, C:0.16, G:0.35, T:0.21
Consensus pattern (37 bp):
GACGGAGAAGTTCCGTAGAGTACTGGCGGCATATTAA
Found at i:6887872 original size:22 final size:22
Alignment explanation
Indices: 6887847--6887906 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 22
6887837 TTTGAACCAT
6887847 TACCAATTCGTACCAAATTCC-A
1 TACCAATTCGTACC-AATTCCAA
*
6887869 TACCATTTCGTACCAATTCCTAAA
1 TACCAATTCGTACCAATTCC--AA
*
6887893 TACCAAATCGTACC
1 TACCAATTCGTACC
6887907 TAAACCAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 6 0.19
22 13 0.41
24 13 0.41
ACGTcount: A:0.35, C:0.32, G:0.05, T:0.28
Consensus pattern (22 bp):
TACCAATTCGTACCAATTCCAA
Found at i:6891671 original size:40 final size:40
Alignment explanation
Indices: 6891626--6891752 Score: 102
Period size: 40 Copynumber: 3.2 Consensus size: 40
6891616 GGTATGTGAT
6891626 TATTGAGGACATGCTGAGCATGTCAAATGAATGTGAAAAG
1 TATTGAGGACATGCTGAGCATGTCAAATGAATGTGAAAAG
* * * * * **
6891666 TATTGA-GATATGATTATGTATG--AGATTG--TGTGACATATTT
1 TATTGAGGACATGCTGA-GCATGTCA-AATGAATGTGA-A-A-AG
*
6891706 TATTAAGGACATGCTGAGCATGTCAAATGAATGTGAAAAG
1 TATTGAGGACATGCTGAGCATGTCAAATGAATGTGAAAAG
6891746 TATTGAG
1 TATTGAG
6891753 ATATGATTAT
Statistics
Matches: 61, Mismatches: 16, Indels: 20
0.63 0.16 0.21
Matches are distributed among these distances:
37 5 0.08
38 2 0.03
39 11 0.18
40 25 0.41
41 11 0.18
42 2 0.03
43 5 0.08
ACGTcount: A:0.35, C:0.07, G:0.25, T:0.32
Consensus pattern (40 bp):
TATTGAGGACATGCTGAGCATGTCAAATGAATGTGAAAAG
Found at i:6891715 original size:80 final size:80
Alignment explanation
Indices: 6891625--6891784 Score: 311
Period size: 80 Copynumber: 2.0 Consensus size: 80
6891615 AGGTATGTGA
*
6891625 TTATTGAGGACATGCTGAGCATGTCAAATGAATGTGAAAAGTATTGAGATATGATTATGTATGAG
1 TTATTAAGGACATGCTGAGCATGTCAAATGAATGTGAAAAGTATTGAGATATGATTATGTATGAG
6891690 ATTGTGTGACATATT
66 ATTGTGTGACATATT
6891705 TTATTAAGGACATGCTGAGCATGTCAAATGAATGTGAAAAGTATTGAGATATGATTATGTATGAG
1 TTATTAAGGACATGCTGAGCATGTCAAATGAATGTGAAAAGTATTGAGATATGATTATGTATGAG
6891770 ATTGTGTGACATATT
66 ATTGTGTGACATATT
6891785 GCATATGCAT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.35
Consensus pattern (80 bp):
TTATTAAGGACATGCTGAGCATGTCAAATGAATGTGAAAAGTATTGAGATATGATTATGTATGAG
ATTGTGTGACATATT
Found at i:6896979 original size:215 final size:216
Alignment explanation
Indices: 6896566--6896993 Score: 635
Period size: 215 Copynumber: 2.0 Consensus size: 216
6896556 TAAACTGAAT
* * * * * * *
6896566 CTAATTCTGAAAATGTTGGATTAGTTGGATTGAAATTGAATGATATAAGCGTGTATTTGACCGAA
1 CTAATTCTAAAAAGGTTGGATTAGTTAGACTGAAATTGAATGATACAAGCGGGTATTCGACCGAA
* * * *
6896631 TACTTGCAGCAGACTCTAGACATAGAGCAGCGTTTGTATAGAATGAAGACAAATTAGTGCAGGGT
66 TACTTGCAGCAGACTCTAGACATAAAGCAGCGTTTGTATAGAATGAAGACAAAATAGTACACGGT
* * * * *
6896696 ATCGTGCTAAGGCCTATAGACATAGGCCAGGTAACTTGAGATCTTGCTCTTGAAAGAAGCAAGTC
131 ACCATGCTAAGGACTATAGACACAGGCCAGGTAACTTGAGATCTTGCTCTTAAAAGAAGCAAGTC
6896761 ACTTTAGGTCTCTTCTAAACC
196 ACTTTAGGTCTCTTCTAAACC
*
6896782 CTAATTCTAAAAAGGTTGGA-TAGTTAGACTGAAATTGAATGATACAAGCGGGTATTCGACTGAA
1 CTAATTCTAAAAAGGTTGGATTAGTTAGACTGAAATTGAATGATACAAGCGGGTATTCGACCGAA
* * *
6896846 TACTTGCAGCAGACTCTAGACATAAAGCAGTGTTTGTATAGAATTAAGACAAAATATTACACGGT
66 TACTTGCAGCAGACTCTAGACATAAAGCAGCGTTTGTATAGAATGAAGACAAAATAGTACACGGT
* *
6896911 ACCATGCTAAGGACTATAGACACAGGCCAGGTAACTTGAGATCTTGCT-TTCAAAAGAATCAGGT
131 ACCATGCTAAGGACTATAGACACAGGCCAGGTAACTTGAGATCTTGCTCTT-AAAAGAAGCAAGT
6896975 CACTTTAGGTCTCTTCTAA
195 CACTTTAGGTCTCTTCTAA
6896994 GTAGTAGAAT
Statistics
Matches: 189, Mismatches: 22, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
214 2 0.01
215 169 0.89
216 18 0.10
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.29
Consensus pattern (216 bp):
CTAATTCTAAAAAGGTTGGATTAGTTAGACTGAAATTGAATGATACAAGCGGGTATTCGACCGAA
TACTTGCAGCAGACTCTAGACATAAAGCAGCGTTTGTATAGAATGAAGACAAAATAGTACACGGT
ACCATGCTAAGGACTATAGACACAGGCCAGGTAACTTGAGATCTTGCTCTTAAAAGAAGCAAGTC
ACTTTAGGTCTCTTCTAAACC
Found at i:6897502 original size:26 final size:26
Alignment explanation
Indices: 6897456--6897555 Score: 110
Period size: 26 Copynumber: 3.8 Consensus size: 26
6897446 GGCACATTCC
* * *
6897456 ATCATAGTATCACACCCAAGTGTGTA
1 ATCACAGTATCACACCGAAGTGTGCA
* * **
6897482 ATCTCAATATCACACCGAAGTACGCA
1 ATCACAGTATCACACCGAAGTGTGCA
*
6897508 ATCGCAGTATCACACCGAAGTGTGCA
1 ATCACAGTATCACACCGAAGTGTGCA
**
6897534 ATCACAGTATTGCACCGAAGTG
1 ATCACAGTATCACACCGAAGTG
6897556 CTCATCAATT
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 60 1.00
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (26 bp):
ATCACAGTATCACACCGAAGTGTGCA
Found at i:6904256 original size:51 final size:51
Alignment explanation
Indices: 6904198--6904384 Score: 200
Period size: 51 Copynumber: 3.7 Consensus size: 51
6904188 CTGGTTGACA
* * * *
6904198 TAGTAGCCTACACATAGTACAACACATGTGACCATCA-CTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT-AGCTATCCGGTACACG
* * *
6904249 TAGTAGCCTGCACATAGTACTACACACGTGATCGA-AGCTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATAGCTATCCGGTACACG
* * * * * *
6904300 TAGTAGCCTGCACATAGTACTACTCATGCGACC-TATCTTTCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATAGCTATCCGGTACACG
* *
6904350 TAGTAGCCTGCACATAGTATTACACACGTGGCCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
6904385 CACTTTCACT
Statistics
Matches: 111, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
50 41 0.37
51 68 0.61
52 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATAGCTATCCGGTACACG
Found at i:6904356 original size:101 final size:101
Alignment explanation
Indices: 6904196--6904379 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 101
6904186 TACTGGTTGA
*
6904196 CATAGTAGCCTACACATAGTACAACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACAACACATGCGACCAT-ACTATCCGATACACGTAGTAGCCTGCA
6904261 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
65 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
* * * * * *
6904298 CATAGTAGCCTGCACATAGTACTACTCATGCGACC-TATCTTTCTGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACAACACATGCGACCATA-CTATCCGATACACGTAGTAGCCTGCA
*
6904362 CATAGTATTACACACGTG
65 CATAGTACTACACACGTG
6904380 GCCATCACTT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
100 1 0.01
101 41 0.56
102 31 0.42
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACAACACATGCGACCATACTATCCGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:6912685 original size:15 final size:15
Alignment explanation
Indices: 6912651--6912687 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
6912641 TCAATGCATA
*
6912651 AACATGAA-AGAAGT
1 AACATGAATAAAAGT
6912665 AA-ATGAATAAAAGT
1 AACATGAATAAAAGT
6912679 AACATGAAT
1 AACATGAAT
6912688 GCAATTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 5 0.25
14 9 0.45
15 6 0.30
ACGTcount: A:0.59, C:0.05, G:0.16, T:0.19
Consensus pattern (15 bp):
AACATGAATAAAAGT
Found at i:6932250 original size:22 final size:22
Alignment explanation
Indices: 6932207--6932271 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
6932197 CCTTTTTGAA
*
6932207 CCATTTCCATTTTCGTACCAAAT
1 CCATTACCA-TTTCGTACCAAAT
**
6932230 CCATTACCATTTCGTTTCAAAT
1 CCATTACCATTTCGTACCAAAT
* * *
6932252 CCCTTACCGTTTCATACCAA
1 CCATTACCATTTCGTACCAA
6932272 TTCCCAAATA
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
22 26 0.76
23 8 0.24
ACGTcount: A:0.26, C:0.32, G:0.05, T:0.37
Consensus pattern (22 bp):
CCATTACCATTTCGTACCAAAT
Found at i:6940724 original size:23 final size:23
Alignment explanation
Indices: 6940654--6940726 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
6940644 AATTTGTCTT
* *
6940654 TTCTGTGGAAGCCTTTATGGCTA
1 TTCTGTGGAAGCCTTTGTGGCTG
* *
6940677 TTATGTGGAAGCCTTTGTGGTTG
1 TTCTGTGGAAGCCTTTGTGGCTG
* *
6940700 TTCTGTGGAAGCCTTCGTAGCTG
1 TTCTGTGGAAGCCTTTGTGGCTG
6940723 TTCT
1 TTCT
6940727 AAATTGTGGA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.14, C:0.16, G:0.29, T:0.41
Consensus pattern (23 bp):
TTCTGTGGAAGCCTTTGTGGCTG
Found at i:6940951 original size:29 final size:30
Alignment explanation
Indices: 6940829--6940952 Score: 72
Period size: 30 Copynumber: 4.2 Consensus size: 30
6940819 ATAATCTAAC
* * * * *
6940829 ATGTGAGCCCTTGTGATGGGAACTTGCTAT
1 ATGTGAGCCCTTGTGGTAGAAACCTGGTAT
* * * * * *
6940859 GTGTGATCCCTTGTGGCA-AGAACTTGTTAC
1 ATGTGAGCCCTTGTGGTAGA-AACCTGGTAT
* *
6940889 ACGTGAGCCCTTGTGGTAGAAATCTGGTAT
1 ATGTGAGCCCTTGTGGTAGAAACCTGGTAT
* * * *
6940919 ATGTGAGCCTTTGTGGT-GGAACCTGTTGT
1 ATGTGAGCCCTTGTGGTAGAAACCTGGTAT
6940948 ATGTG
1 ATGTG
6940953 GAAGCCTTAT
Statistics
Matches: 70, Mismatches: 22, Indels: 5
0.72 0.23 0.05
Matches are distributed among these distances:
29 13 0.19
30 56 0.80
31 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.31, T:0.34
Consensus pattern (30 bp):
ATGTGAGCCCTTGTGGTAGAAACCTGGTAT
Found at i:6941440 original size:20 final size:21
Alignment explanation
Indices: 6941415--6941454 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
6941405 ATGTTTGTTA
6941415 TGTATGCATGTAT-ATAATGT
1 TGTATGCATGTATGATAATGT
*
6941435 TGTATGTATGTATGATAATG
1 TGTATGCATGTATGATAATG
6941455 CCTTGCTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.30, C:0.03, G:0.23, T:0.45
Consensus pattern (21 bp):
TGTATGCATGTATGATAATGT
Found at i:6942839 original size:30 final size:29
Alignment explanation
Indices: 6942805--6942870 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 29
6942795 AGAAAGATGG
*
6942805 AAAATGGCAACTCT-GTTATGTCTGTAACGA
1 AAAATGGC-ACTCTCGTTATGTCTATAA-GA
* *
6942835 AAAATGGCAGTTTCGTTATGTCTATAAGA
1 AAAATGGCACTCTCGTTATGTCTATAAGA
6942864 AAAATGG
1 AAAATGG
6942871 TTAGTGTTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 12 0.38
30 20 0.62
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (29 bp):
AAAATGGCACTCTCGTTATGTCTATAAGA
Found at i:6943850 original size:21 final size:21
Alignment explanation
Indices: 6943826--6943870 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
6943816 AAATAAAAAC
* *
6943826 AAAATAATA-ATGACAATACTA
1 AAAATAAAATATG-CAATAATA
6943847 AAAATAAAATATGCAATAATA
1 AAAATAAAATATGCAATAATA
6943868 AAA
1 AAA
6943871 GCATGTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (21 bp):
AAAATAAAATATGCAATAATA
Found at i:6944082 original size:8 final size:8
Alignment explanation
Indices: 6944069--6944155 Score: 58
Period size: 8 Copynumber: 10.8 Consensus size: 8
6944059 AAGGAATAAT
6944069 AAATAAGA
1 AAATAAGA
*
6944077 AAATAAGT
1 AAATAAGA
6944085 AAATAA-A
1 AAATAAGA
6944092 TAAATAA-A
1 -AAATAAGA
6944100 AGAAT--GA
1 A-AATAAGA
6944107 AAATAAGA
1 AAATAAGA
6944115 AAATAAGCGA
1 AAATAA--GA
*
6944125 AGGAATAA-T
1 A--AATAAGA
6944134 AAATAAGA
1 AAATAAGA
*
6944142 AAATAAGT
1 AAATAAGA
6944150 AAATAA
1 AAATAA
6944156 ACAAATAAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
6 3 0.05
7 8 0.12
8 44 0.69
9 1 0.02
10 3 0.05
12 5 0.08
ACGTcount: A:0.69, C:0.01, G:0.13, T:0.17
Consensus pattern (8 bp):
AAATAAGA
Found at i:6944124 original size:65 final size:65
Alignment explanation
Indices: 6944049--6944171 Score: 228
Period size: 65 Copynumber: 1.9 Consensus size: 65
6944039 ATTAAATATT
*
6944049 AAAAGAAGCGAAGGAATAATAAATAAGAAAATAAGTAAATAAATAAATAAAAGAATGAAAATAAG
1 AAAAGAAGCGAAGGAATAATAAATAAGAAAATAAGTAAATAAACAAATAAAAGAATGAAAATAAG
*
6944114 AAAATAAGCGAAGGAATAATAAATAAGAAAATAAGTAAATAAACAAATAAAAGAATGA
1 AAAAGAAGCGAAGGAATAATAAATAAGAAAATAAGTAAATAAACAAATAAAAGAATGA
6944172 TAATGAATAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 56 1.00
ACGTcount: A:0.67, C:0.02, G:0.15, T:0.15
Consensus pattern (65 bp):
AAAAGAAGCGAAGGAATAATAAATAAGAAAATAAGTAAATAAACAAATAAAAGAATGAAAATAAG
Found at i:6944146 original size:12 final size:12
Alignment explanation
Indices: 6944066--6944147 Score: 60
Period size: 12 Copynumber: 6.4 Consensus size: 12
6944056 GCGAAGGAAT
6944066 AATAAATAAGAA
1 AATAAATAAGAA
*
6944078 AATAAGTAA-ATA
1 AATAAATAAGA-A
6944090 AATAAATAA-AA
1 AATAAATAAGAA
6944101 GAATGAAAATAAGAA
1 -AAT--AAATAAGAA
**
6944116 AATAAGCGAAGGAA
1 AATAA-ATAA-GAA
6944130 TAATAAATAAGAA
1 -AATAAATAAGAA
6944143 AATAA
1 AATAA
6944148 GTAAATAAAC
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
11 2 0.04
12 28 0.50
13 5 0.09
14 14 0.25
15 7 0.12
ACGTcount: A:0.70, C:0.01, G:0.12, T:0.17
Consensus pattern (12 bp):
AATAAATAAGAA
Found at i:6944163 original size:16 final size:15
Alignment explanation
Indices: 6944063--6944155 Score: 66
Period size: 16 Copynumber: 5.8 Consensus size: 15
6944053 GAAGCGAAGG
6944063 AATAATAAATAAGAA
1 AATAATAAATAAGAA
6944078 AATAAGTAAATAA-ATA
1 AATAA-TAAATAAGA-A
*
6944094 AATAA-AAGA-ATGAA
1 AATAATAA-ATAAGAA
*
6944108 AATAAGAAAATAAGCGAA
1 AATAA-TAAATAA--GAA
6944126 GGAATAATAAATAAGAA
1 --AATAATAAATAAGAA
6944143 AATAAGTAAATAA
1 AATAA-TAAATAA
6944156 ACAAATAAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 23
0.71 0.03 0.26
Matches are distributed among these distances:
14 9 0.14
15 14 0.22
16 23 0.37
17 3 0.05
18 3 0.05
19 6 0.10
20 5 0.08
ACGTcount: A:0.69, C:0.01, G:0.12, T:0.18
Consensus pattern (15 bp):
AATAATAAATAAGAA
Found at i:6945402 original size:14 final size:14
Alignment explanation
Indices: 6945385--6945427 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
6945375 TATTTTTTTT
6945385 GTTTGGGTTGATTG
1 GTTTGGGTTGATTG
6945399 GTTT-GG-T--TT-
1 GTTTGGGTTGATTG
6945408 GTTTGGGTTGATTG
1 GTTTGGGTTGATTG
6945422 GTTTGG
1 GTTTGG
6945428 TTTATTTGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 10
0.71 0.00 0.29
Matches are distributed among these distances:
9 4 0.17
10 4 0.17
11 1 0.04
12 1 0.04
13 4 0.17
14 10 0.42
ACGTcount: A:0.05, C:0.00, G:0.42, T:0.53
Consensus pattern (14 bp):
GTTTGGGTTGATTG
Found at i:6945412 original size:23 final size:23
Alignment explanation
Indices: 6945382--6945460 Score: 140
Period size: 23 Copynumber: 3.4 Consensus size: 23
6945372 ATCTATTTTT
6945382 TTTGTTTGGGTTGATTGGTTTGG
1 TTTGTTTGGGTTGATTGGTTTGG
6945405 TTTGTTTGGGTTGATTGGTTTGG
1 TTTGTTTGGGTTGATTGGTTTGG
* *
6945428 TTTATTTGGGCTGATTGGTTTGG
1 TTTGTTTGGGTTGATTGGTTTGG
6945451 TTTGTTTGGG
1 TTTGTTTGGG
6945461 CTCAGAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 53 1.00
ACGTcount: A:0.05, C:0.01, G:0.38, T:0.56
Consensus pattern (23 bp):
TTTGTTTGGGTTGATTGGTTTGG
Found at i:6946023 original size:44 final size:44
Alignment explanation
Indices: 6945879--6946103 Score: 243
Period size: 44 Copynumber: 5.1 Consensus size: 44
6945869 TTTGTAACTC
* *
6945879 GTAGCTTTAATCTGTTCCACTGCAACTTTTTGGGAAATAAGATTT
1 GTAGCTTTAATCTGCTCCACTGCAAC-TTTAGGGAAATAAGATTT
* * * *
6945924 GTAGCTTTAATCTACTCCACTACAACTTTCAAGGAAATAAGGTTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTT-AGGGAAATAAGATTT
* *
6945969 GTAGCTTTAATCTGCTCCATTGCAACTTTAGGGAGATAAGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAAATAAGATTT
* * * *
6946013 GTAGCTTTAATATGCTCCACTGTAACTTCAGGGAAATAAGATTC
1 GTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAAATAAGATTT
* * * * * * ** *
6946057 GCAACTTCAATCCGCTCCACTACAACTTCAAAGAGATAAGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAAATAAGATTT
6946101 GTA
1 GTA
6946104 ACTCCAATCT
Statistics
Matches: 149, Mismatches: 30, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
44 88 0.59
45 61 0.41
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33
Consensus pattern (44 bp):
GTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAAATAAGATTT
Found at i:6946674 original size:29 final size:25
Alignment explanation
Indices: 6946614--6946664 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
6946604 TTTTAGAATA
6946614 TTTAAGAATAGCATTGTCCTTTCTT
1 TTTAAGAATAGCATTGTCCTTTCTT
*
6946639 TTTAAGAATAGCATTGTCGTTTCTT
1 TTTAAGAATAGCATTGTCCTTTCTT
6946664 T
1 T
6946665 CTCTAGAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (25 bp):
TTTAAGAATAGCATTGTCCTTTCTT
Found at i:6951543 original size:20 final size:20
Alignment explanation
Indices: 6951492--6951548 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
6951482 CAACAACATC
6951492 AAAAAATA-AA-AATAAAAT
1 AAAAAATACAATAATAAAAT
* *
6951510 -AATAATGACGATAATAAAAT
1 AAAAAAT-ACAATAATAAAAT
6951530 AAAAAATACAATAATAAAA
1 AAAAAATACAATAATAAAA
6951549 GCATGTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 5 0.16
18 1 0.03
19 1 0.03
20 19 0.61
21 5 0.16
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.19
Consensus pattern (20 bp):
AAAAAATACAATAATAAAAT
Found at i:6952949 original size:23 final size:23
Alignment explanation
Indices: 6952922--6952967 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
6952912 TTTTTTTGGA
6952922 TGATTGGTTTGGTTTCTTTGGGC
1 TGATTGGTTTGGTTTCTTTGGGC
6952945 TGATTGGTTTGGTTTCTTTGGGC
1 TGATTGGTTTGGTTTCTTTGGGC
6952968 CCAGATAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.04, C:0.09, G:0.35, T:0.52
Consensus pattern (23 bp):
TGATTGGTTTGGTTTCTTTGGGC
Found at i:6955534 original size:22 final size:24
Alignment explanation
Indices: 6955500--6955543 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
6955490 NTTGGACCAA
6955500 GATTTCCAAGA-T-TTGAAATCTT
1 GATTTCCAAGATTCTTGAAATCTT
**
6955522 GATTTCCTTGATTCTTGAAATC
1 GATTTCCAAGATTCTTGAAATC
6955544 GCTCAAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 9 0.50
23 1 0.06
24 8 0.44
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (24 bp):
GATTTCCAAGATTCTTGAAATCTT
Found at i:6955661 original size:69 final size:69
Alignment explanation
Indices: 6955491--6955641 Score: 284
Period size: 69 Copynumber: 2.2 Consensus size: 69
6955481 NNNNNNNNNN
6955491 TTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTCCTTGATTCTTGAAATCGCTCAAAACAGC
1 TTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTCCTTGATTCTTGAAATCGCTCAAAACAGC
6955556 AAAA
66 AAAA
*
6955560 TTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGC
1 TTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTCCTTGATTCTTGAAATCGCTCAAAACAGC
6955625 AAAA
66 AAAA
*
6955629 TTGGACCGAGATT
1 TTGGACCAAGATT
6955642 CGGTTTCTTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
69 80 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (69 bp):
TTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTCCTTGATTCTTGAAATCGCTCAAAACAGC
AAAA
Found at i:6962887 original size:18 final size:18
Alignment explanation
Indices: 6962864--6962900 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
6962854 GGAAAAAGAA
*
6962864 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAGGAT
6962882 ACATATAAGGGCTAGGAT
1 ACATATAAGGGCTAGGAT
6962900 A
1 A
6962901 TGCACCTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.08, G:0.27, T:0.24
Consensus pattern (18 bp):
ACATATAAGGGCTAGGAT
Found at i:6968122 original size:2 final size:2
Alignment explanation
Indices: 6968115--6968140 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6968105 AGGTCTTTTC
6968115 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
6968141 GTTTGTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:6971249 original size:6 final size:6
Alignment explanation
Indices: 6971240--6971267 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
6971230 AGGATTAAGA
6971240 CATGCT CATGCT CATGCT CATGCT CATG
1 CATGCT CATGCT CATGCT CATGCT CATG
6971268 TTACAGTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.32
Consensus pattern (6 bp):
CATGCT
Found at i:6971659 original size:135 final size:134
Alignment explanation
Indices: 6971418--6971660 Score: 432
Period size: 135 Copynumber: 1.8 Consensus size: 134
6971408 AACTGTTGAC
* *
6971418 TGCCAAAGCCAGCATTTGGATCTGATCATTATATAAAAACTTCGTCTTTCAGTTTTATCAGTCAA
1 TGCCAAAGCCAGCATTTGAATCTGATCATTATATAAAAACTTCGTCTATCAGTTTTATCAGTCAA
*
6971483 TGAGACAAAGATGTCAATTTCACTTTAGTTCGGGTTTTTGCATGACTTTCATATTCTCTCCCTTT
66 TGAGACAAAGATGTCAATTTCACTTTAGATCGGGTTTTTGCATGACTTTCATATTCTCTCCCTTT
6971548 TTTA
131 TTTA
*
6971552 TGCCAAAGCCAGCTTTTGAATCTGATCATTATATAAAAACTTCCGTCTATCAGTTTTATCAGTCA
1 TGCCAAAGCCAGCATTTGAATCTGATCATTATATAAAAACTT-CGTCTATCAGTTTTATCAGTCA
*
6971617 ATGAGACAAAGATGTCAATTTTACTTTAGATCGGGTTTTTGCAT
65 ATGAGACAAAGATGTCAATTTCACTTTAGATCGGGTTTTTGCAT
6971661 TTTGTTTTAG
Statistics
Matches: 103, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
134 40 0.39
135 63 0.61
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (134 bp):
TGCCAAAGCCAGCATTTGAATCTGATCATTATATAAAAACTTCGTCTATCAGTTTTATCAGTCAA
TGAGACAAAGATGTCAATTTCACTTTAGATCGGGTTTTTGCATGACTTTCATATTCTCTCCCTTT
TTTA
Found at i:6976562 original size:22 final size:21
Alignment explanation
Indices: 6976534--6976585 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
6976524 AAGGTGGAAG
* *
6976534 TTATGTGGTAGTTTATCTACGA
1 TTATGTGGTAG-TTATCGACAA
**
6976556 TTATGTGGCCGTTATCGACAA
1 TTATGTGGTAGTTATCGACAA
6976577 TTATGTGGT
1 TTATGTGGT
6976586 GGCTTGTCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.21, C:0.12, G:0.25, T:0.42
Consensus pattern (21 bp):
TTATGTGGTAGTTATCGACAA
Found at i:6991690 original size:21 final size:21
Alignment explanation
Indices: 6991657--6991717 Score: 104
Period size: 21 Copynumber: 2.9 Consensus size: 21
6991647 ATTGGGTGAA
*
6991657 TCAACTTTTACGAGCTTCTGT
1 TCAACTCTTACGAGCTTCTGT
*
6991678 TCAGCTCTTACGAGCTTCTGT
1 TCAACTCTTACGAGCTTCTGT
6991699 TCAACTCTTACGAGCTTCT
1 TCAACTCTTACGAGCTTCT
6991718 ATTGACATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.18, C:0.28, G:0.15, T:0.39
Consensus pattern (21 bp):
TCAACTCTTACGAGCTTCTGT
Found at i:6994499 original size:21 final size:22
Alignment explanation
Indices: 6994470--6994514 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
6994460 CTGATTGTAG
*
6994470 TTCTGCTA-CTGTTGATTATAAT
1 TTCTGCTACCTG-GGATTATAAT
6994492 TTCT-CTACCTGGGATTATAAT
1 TTCTGCTACCTGGGATTATAAT
6994513 TT
1 TT
6994515 TCCTAAGTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.22, C:0.16, G:0.13, T:0.49
Consensus pattern (22 bp):
TTCTGCTACCTGGGATTATAAT
Found at i:6998056 original size:25 final size:26
Alignment explanation
Indices: 6998028--6998077 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
6998018 TGACAAAAAC
6998028 TAATATA-TATATAATTAATT-TTATA
1 TAATATATTATAT-ATTAATTGTTATA
6998053 TAATATATTATATATTAATTGTTAT
1 TAATATATTATATATTAATTGTTAT
6998078 TGTCTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (26 bp):
TAATATATTATATATTAATTGTTATA
Found at i:7006316 original size:44 final size:43
Alignment explanation
Indices: 7006268--7006355 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 43
7006258 AGGGTAAATC
* * *
7006268 CAACAACCCATGTTTATCTTTTCCTATTTTTAAATTCTTCTTTT
1 CAACAACCCAAGATTATCTTCTCCTATTTTTAAATTCTT-TTTT
*
7006312 CAACAACCCAAGATTATCTTCTCCTATTTTTTAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTCCTATTTTTAAATTCTTTTTT
7006355 C
1 C
7006356 TAGGATAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 5 0.12
44 35 0.88
ACGTcount: A:0.24, C:0.24, G:0.02, T:0.50
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTTCTCCTATTTTTAAATTCTTTTTT
Found at i:7015240 original size:17 final size:17
Alignment explanation
Indices: 7015218--7015275 Score: 116
Period size: 17 Copynumber: 3.4 Consensus size: 17
7015208 AGCAATGATG
7015218 CATTGCTAGATGCCACT
1 CATTGCTAGATGCCACT
7015235 CATTGCTAGATGCCACT
1 CATTGCTAGATGCCACT
7015252 CATTGCTAGATGCCACT
1 CATTGCTAGATGCCACT
7015269 CATTGCT
1 CATTGCT
7015276 TGTATTATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 41 1.00
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.31
Consensus pattern (17 bp):
CATTGCTAGATGCCACT
Found at i:7015675 original size:49 final size:50
Alignment explanation
Indices: 7015580--7015682 Score: 118
Period size: 51 Copynumber: 2.1 Consensus size: 50
7015570 AAATATGGTA
** * *
7015580 GTTATAATTCTCTTTGGAAAGAATATAATGTTTTTTTAATATTTTCCACAT
1 GTTATAATTCTCTTTGGAAAGAATATAA-GCATGTTTAATACTTTCCACAT
* * * *
7015631 GTTATAATTCTTTTTGGAAAGAGTATAA-CATGTTTAATGCTTTCCATAT
1 GTTATAATTCTCTTTGGAAAGAATATAAGCATGTTTAATACTTTCCACAT
7015680 GTT
1 GTT
7015683 CTCTATAAGA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
49 18 0.41
51 26 0.59
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.48
Consensus pattern (50 bp):
GTTATAATTCTCTTTGGAAAGAATATAAGCATGTTTAATACTTTCCACAT
Found at i:7020467 original size:23 final size:25
Alignment explanation
Indices: 7020437--7020527 Score: 109
Period size: 23 Copynumber: 3.7 Consensus size: 25
7020427 TTTAGACTAA
7020437 TATTTAAA-T-ATATTTATTAATTC
1 TATTTAAACTAATATTTATTAATTC
* *
7020460 TATTTAAACTAATATTTAAATATATTT
1 TATTTAAACTAATATTT-ATTA-ATTC
7020487 TATTTAAACT--TATTTATTAATTC
1 TATTTAAACTAATATTTATTAATTC
*
7020510 TATTTAAATTAATATTTA
1 TATTTAAACTAATATTTA
7020528 AATATATCAA
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
23 20 0.35
24 4 0.07
25 17 0.30
26 3 0.05
27 13 0.23
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (25 bp):
TATTTAAACTAATATTTATTAATTC
Found at i:7020473 original size:27 final size:27
Alignment explanation
Indices: 7020443--7020524 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 27
7020433 CTAATATTTA
7020443 AATATATTTATTAATTCTATTTAAACT
1 AATATATTTATTAATTCTATTTAAACT
* * *
7020470 AATAT-TTAAATATATTTTATTTAAAC-
1 AATATATTTATTA-ATTCTATTTAAACT
*
7020496 --T-TATTTATTAATTCTATTTAAATT
1 AATATATTTATTAATTCTATTTAAACT
7020520 AATAT
1 AATAT
7020525 TTAAATATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 12
0.69 0.11 0.20
Matches are distributed among these distances:
23 12 0.29
24 6 0.14
26 6 0.14
27 18 0.43
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (27 bp):
AATATATTTATTAATTCTATTTAAACT
Found at i:7020501 original size:50 final size:50
Alignment explanation
Indices: 7020437--7020534 Score: 171
Period size: 50 Copynumber: 2.0 Consensus size: 50
7020427 TTTAGACTAA
7020437 TATTTAAATATATTTATTAATTCTATTTAAACTAATATTTAAATATATTT
1 TATTTAAATATATTTATTAATTCTATTTAAACTAATATTTAAATATATTT
*
7020487 TATTTAAACT-TATTTATTAATTCTATTTAAATTAATATTTAAATATAT
1 TATTTAAA-TATATTTATTAATTCTATTTAAACTAATATTTAAATATAT
7020535 CAAATGGTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
50 45 0.98
51 1 0.02
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (50 bp):
TATTTAAATATATTTATTAATTCTATTTAAACTAATATTTAAATATATTT
Found at i:7020863 original size:15 final size:15
Alignment explanation
Indices: 7020843--7020924 Score: 55
Period size: 15 Copynumber: 5.5 Consensus size: 15
7020833 ATCCCTAACT
7020843 CTTAACCCATAAACC
1 CTTAACCCATAAACC
*
7020858 CTTAACCCCTAAA-C
1 CTTAACCCATAAACC
*
7020872 CTTAAATCC-T-AACC
1 CTT-AACCCATAAACC
*
7020886 CTTAAACCACTAAACCC
1 CTTAACCCA-TAAA-CC
* **
7020903 CTAAACCTTTAAACC
1 CTTAACCCATAAACC
7020918 C-TAACCC
1 CTTAACCC
7020925 GAATCCCTAA
Statistics
Matches: 52, Mismatches: 9, Indels: 13
0.70 0.12 0.18
Matches are distributed among these distances:
13 6 0.12
14 13 0.25
15 20 0.38
16 6 0.12
17 7 0.13
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.22
Consensus pattern (15 bp):
CTTAACCCATAAACC
Found at i:7020876 original size:14 final size:14
Alignment explanation
Indices: 7020843--7020951 Score: 58
Period size: 14 Copynumber: 7.6 Consensus size: 14
7020833 ATCCCTAACT
*
7020843 CTTAACCCATAAACC
1 CTTAACCCCTAAA-C
7020858 CTTAACCCCTAAAC
1 CTTAACCCCTAAAC
** *
7020872 CTTAAATCCTAACC
1 CTTAACCCCTAAAC
*
7020886 CTTAAACCACTAAACCC
1 CTT-AACCCCTAAA--C
* **
7020903 CTAAACCTTTAAAC
1 CTTAACCCCTAAAC
* * *
7020917 CCTAA-CCCGAATC
1 CTTAACCCCTAAAC
*
7020930 CCTAACCCCTAAAC
1 CTTAACCCCTAAAC
*
7020944 TTTAACCC
1 CTTAACCC
7020952 AAATCCCTAA
Statistics
Matches: 69, Mismatches: 21, Indels: 9
0.70 0.21 0.09
Matches are distributed among these distances:
13 9 0.13
14 31 0.45
15 18 0.26
16 8 0.12
17 3 0.04
ACGTcount: A:0.37, C:0.40, G:0.01, T:0.22
Consensus pattern (14 bp):
CTTAACCCCTAAAC
Found at i:7022164 original size:12 final size:11
Alignment explanation
Indices: 7022147--7022203 Score: 53
Period size: 12 Copynumber: 4.9 Consensus size: 11
7022137 AAAATCATTT
7022147 TATTTAAACTAA
1 TATTTAAA-TAA
7022159 TATTTAAAT-A
1 TATTTAAATAA
**
7022169 TATTTATTAATTC
1 TATTTA--AATAA
7022182 TATTTAAACTAA
1 TATTTAAA-TAA
7022194 TATTTAAATA
1 TATTTAAATA
7022204 TTTAAATATG
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.18
11 5 0.13
12 20 0.53
13 6 0.16
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (11 bp):
TATTTAAATAA
Found at i:7022221 original size:35 final size:35
Alignment explanation
Indices: 7022138--7022226 Score: 117
Period size: 35 Copynumber: 2.5 Consensus size: 35
7022128 TTTCGAGCAA
*
7022138 AAATCATTTTATTTAAACTAATATTTAAATATATT
1 AAATAATTTTATTTAAACTAATATTTAAATATATT
* * *
7022173 TATTAATTCTATTTAAACTAATATTTAAATAT-TT
1 AAATAATTTTATTTAAACTAATATTTAAATATATT
*
7022207 AAATATGTTTTATTTAAACT
1 AAATA-ATTTTATTTAAACT
7022227 TAATTATTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
34 5 0.11
35 40 0.89
ACGTcount: A:0.43, C:0.06, G:0.01, T:0.51
Consensus pattern (35 bp):
AAATAATTTTATTTAAACTAATATTTAAATATATT
Found at i:7022234 original size:58 final size:57
Alignment explanation
Indices: 7022159--7022476 Score: 441
Period size: 58 Copynumber: 5.8 Consensus size: 57
7022149 TTTAAACTAA
7022159 TATTTAAA-TATATTTATTAATTCTATTTAAACTAATATTTAAATATTTAAATATGTTT
1 TATTTAAACT-TATTTATTAATTCTATTTAAACTAATATTTAAATATTTAAATAT-TTT
* *
7022217 TATTTAAACTTAATTATTATTTCTATTTAAACTAATATTTAAATATTTAAATATATTT
1 TATTTAAACTTATTTATTAATTCTATTTAAACTAATATTTAAATATTTAAATAT-TTT
*
7022275 TATTTAAAATTATTTATTAATTCTATTTAAACTAATATTT-AA-A--T--ATA-TTT
1 TATTTAAACTTATTTATTAATTCTATTTAAACTAATATTTAAATATTTAAATATTTT
*
7022325 TATTTAAACTTAATTATTAATTCTATTTAAACTAATATTTAAATATTTAAATATATTT
1 TATTTAAACTTATTTATTAATTCTATTTAAACTAATATTTAAATATTTAAATAT-TTT
7022383 TATTTAAACTTATTTATTAATTCTATTTAAACTAATATTT-AA-A--T--ATA-TTT
1 TATTTAAACTTATTTATTAATTCTATTTAAACTAATATTTAAATATTTAAATATTTT
*
7022433 TATTTAAACTTATTTATTAATTTTATTTAAACTAATATTATAAA
1 TATTTAAACTTATTTATTAATTCTATTTAAACTAATATT-TAAA
7022477 ATATATCAAA
Statistics
Matches: 239, Mismatches: 10, Indels: 28
0.86 0.04 0.10
Matches are distributed among these distances:
50 82 0.34
51 3 0.01
52 9 0.04
54 3 0.01
56 5 0.02
57 4 0.02
58 132 0.55
59 1 0.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (57 bp):
TATTTAAACTTATTTATTAATTCTATTTAAACTAATATTTAAATATTTAAATATTTT
Found at i:7022260 original size:50 final size:50
Alignment explanation
Indices: 7022200--7022482 Score: 350
Period size: 50 Copynumber: 5.3 Consensus size: 50
7022190 CTAATATTTA
* * *
7022200 AATATTTAAATATGTTTTATTTAAACTTAATTATTATTTCTATTTAAACTAATATTT
1 AATATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAAC-------T
*
7022257 AAATATTTAAATATATTTTATTTAAAATTATTTATTAATTCTATTTAAACT
1 -AATATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAACT
*
7022308 AATATTTAAATATATTTTATTTAAACTTAATTATTAATTCTATTTAAACTAATATTT
1 AATATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAAC-------T
7022365 AAATATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAACT
1 -AATATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAACT
*
7022416 AATATTTAAATATATTTTATTTAAACTTATTTATTAATTTTATTTAAACT
1 AATATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAACT
7022466 AATATTATAAAATATAT
1 AATATT-T-AAATATAT
7022483 CAAATGGTTT
Statistics
Matches: 207, Mismatches: 8, Indels: 26
0.86 0.03 0.11
Matches are distributed among these distances:
50 102 0.49
51 3 0.01
52 8 0.04
57 1 0.00
58 93 0.45
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (50 bp):
AATATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAACT
Found at i:7022279 original size:23 final size:24
Alignment explanation
Indices: 7022252--7022332 Score: 87
Period size: 23 Copynumber: 3.3 Consensus size: 24
7022242 TTTAAACTAA
7022252 TATTT-AAATATTTAAATATATTT
1 TATTTAAAATATTTAAATATATTT
* *
7022275 TATTTAAAATTATTT-ATTA-ATTC
1 TATTTAAAA-TATTTAAATATATTT
7022298 TATTTAAACTAATATTTAAATATATTT
1 TATTT-AA--AATATTTAAATATATTT
7022325 TATTTAAA
1 TATTTAAA
7022333 CTTAATTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
23 13 0.28
24 9 0.19
25 10 0.21
26 7 0.15
27 8 0.17
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
TATTTAAAATATTTAAATATATTT
Found at i:7022319 original size:108 final size:108
Alignment explanation
Indices: 7022200--7022476 Score: 493
Period size: 108 Copynumber: 2.6 Consensus size: 108
7022190 CTAATATTTA
*
7022200 AATATTTAAATATGTTTTATTTAAACTTAATTATTATTTCTATTTAAACTAATATTTAAATATTT
1 AATATTTAAATATATTTTATTTAAACTTAATTATTATTTCTATTTAAACTAATATTTAAATATTT
7022265 AAATATATTTTATTTAAAATTATTTATTAATTCTATTTAAACT
66 AAATATATTTTATTTAAAATTATTTATTAATTCTATTTAAACT
*
7022308 AATATTTAAATATATTTTATTTAAACTTAATTATTAATTCTATTTAAACTAATATTTAAATATTT
1 AATATTTAAATATATTTTATTTAAACTTAATTATTATTTCTATTTAAACTAATATTTAAATATTT
*
7022373 AAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAACT
66 AAATATATTTTATTTAAAATTATTTATTAATTCTATTTAAACT
*
7022416 AATATTTAAATATATTTTATTTAAACTTATTTATTAATTT-TATTTAAACTAATATTATAAA
1 AATATTTAAATATATTTTATTTAAACTTAATTATT-ATTTCTATTTAAACTAATATT-TAAA
7022477 ATATATCAAA
Statistics
Matches: 162, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
108 155 0.96
109 7 0.04
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (108 bp):
AATATTTAAATATATTTTATTTAAACTTAATTATTATTTCTATTTAAACTAATATTTAAATATTT
AAATATATTTTATTTAAAATTATTTATTAATTCTATTTAAACT
Found at i:7022351 original size:23 final size:23
Alignment explanation
Indices: 7022275--7022357 Score: 94
Period size: 23 Copynumber: 3.4 Consensus size: 23
7022265 AAATATATTT
*
7022275 TATTTAAAATTATTTATTAATTC
1 TATTTAAACTTATTTATTAATTC
* *
7022298 TATTTAAACTAATATTTAAATATATTT
1 TATTTAAACT--TATTT-ATTA-ATTC
*
7022325 TATTTAAACTTAATTATTAATTC
1 TATTTAAACTTATTTATTAATTC
7022348 TATTTAAACT
1 TATTTAAACT
7022358 AATATTTAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
23 22 0.44
24 3 0.06
25 9 0.18
26 3 0.06
27 13 0.26
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (23 bp):
TATTTAAACTTATTTATTAATTC
Found at i:7022390 original size:23 final size:22
Alignment explanation
Indices: 7022360--7022466 Score: 99
Period size: 23 Copynumber: 4.5 Consensus size: 22
7022350 TTTAAACTAA
7022360 TATTTAAA-TATTTAAATATATTT
1 TATTTAAACTATTT-AATA-ATTT
* *
7022383 TATTTAAACTTATTTATTAATTC
1 TATTTAAAC-TATTTAATAATTT
7022406 TATTTAAACTAATATTTAAATATATTT
1 TATTTAAAC---TATTT-AATA-ATTT
*
7022433 TATTTAAACTTATTTATTAATTT
1 TATTTAAAC-TATTTAATAATTT
7022456 TATTTAAACTA
1 TATTTAAACTA
7022467 ATATTATAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
22 2 0.03
23 33 0.46
24 6 0.08
25 15 0.21
26 3 0.04
27 12 0.17
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (22 bp):
TATTTAAACTATTTAATAATTT
Found at i:7022809 original size:14 final size:14
Alignment explanation
Indices: 7022739--7022825 Score: 61
Period size: 14 Copynumber: 6.1 Consensus size: 14
7022729 ACCCCTGAAT
*
7022739 CCCTATACCTTAAA
1 CCCTAAACCTTAAA
*
7022753 TCCCT-AACTCTTAAC
1 -CCCTAAAC-CTTAAA
*** *
7022768 CCCTAATGTTTAAC
1 CCCTAAACCTTAAA
7022782 CCCTAAACCCTTAAA
1 CCCTAAA-CCTTAAA
7022797 CCCTAAACCTTAAA
1 CCCTAAACCTTAAA
*
7022811 GCCC-AACCCTTAAA
1 -CCCTAAACCTTAAA
7022825 C
1 C
7022826 TATAATTCGT
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
13 1 0.02
14 33 0.57
15 24 0.41
ACGTcount: A:0.34, C:0.38, G:0.02, T:0.25
Consensus pattern (14 bp):
CCCTAAACCTTAAA
Found at i:7022998 original size:27 final size:27
Alignment explanation
Indices: 7022967--7023022 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
7022957 CCAACCATTA
**
7022967 AACCCCTAAACCCTAACCTGAATCCCT
1 AACCCCTAAACCCTAACCCAAATCCCT
*
7022994 AACCCCTAAACTCTAACCCAAATCCCT
1 AACCCCTAAACCCTAACCCAAATCCCT
7023021 AA
1 AA
7023023 ACCAATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.43, G:0.02, T:0.18
Consensus pattern (27 bp):
AACCCCTAAACCCTAACCCAAATCCCT
Found at i:7023004 original size:35 final size:36
Alignment explanation
Indices: 7022922--7023015 Score: 97
Period size: 35 Copynumber: 2.7 Consensus size: 36
7022912 CCCATAAAGT
*
7022922 CTAACCCCCAAACCCCTAACCCAAAACCTTAAATCC
1 CTAACCCCTAAACCCCTAACCCAAAACCTTAAATCC
** * *
7022958 C-AACCATTAAACCCCTAAACCC-TAACC-TGAATCC
1 CTAACCCCTAAACCCCT-AACCCAAAACCTTAAATCC
*
7022992 CTAACCCCTAAA-CTCTAACCCAAA
1 CTAACCCCTAAACCCCTAACCCAAA
7023016 TCCCTAAACC
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
33 5 0.11
34 11 0.24
35 24 0.52
36 6 0.13
ACGTcount: A:0.39, C:0.44, G:0.01, T:0.16
Consensus pattern (36 bp):
CTAACCCCTAAACCCCTAACCCAAAACCTTAAATCC
Found at i:7023103 original size:81 final size:74
Alignment explanation
Indices: 7022992--7023157 Score: 188
Period size: 74 Copynumber: 2.1 Consensus size: 74
7022982 ACCTGAATCC
* * * * *
7022992 CTAACCCCTAAACTCTAACCCAAATCCCTAAACCAATTAAATAAGCTTATTTAATATATAAATTA
1 CTAAACCCTAAACCCTAACCCAAATACCT-AACC-ACT--A-AACCTTATTT-A-ATATAAATTA
7023057 AAAAACACTAATTAAT
59 AAAAACACTAATTAAT
* * * *
7023073 CTAAACCCTAAACCCTAACCCGAATACCTAACCCCTAAACCTTATTTAATATAAATTAAAACATA
1 CTAAACCCTAAACCCTAACCCAAATACCTAACCACTAAACCTTATTTAATATAAATTAAAAAACA
7023138 CTAATTAAT
66 CTAATTAAT
7023147 CTAAACCCTAA
1 CTAAACCCTAA
7023158 CCTAACATCA
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
74 35 0.46
75 1 0.01
76 9 0.12
77 1 0.01
79 1 0.01
80 4 0.05
81 25 0.33
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.27
Consensus pattern (74 bp):
CTAAACCCTAAACCCTAACCCAAATACCTAACCACTAAACCTTATTTAATATAAATTAAAAAACA
CTAATTAAT
Found at i:7023258 original size:14 final size:15
Alignment explanation
Indices: 7023239--7023271 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
7023229 CTTAAACCAA
7023239 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
7023253 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
7023268 AATC
1 AATC
7023272 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:7023678 original size:41 final size:41
Alignment explanation
Indices: 7023615--7023973 Score: 406
Period size: 41 Copynumber: 8.7 Consensus size: 41
7023605 AAATTTTTTT
* *
7023615 GCGGCACTTTTTCAAAAACGCCGCTAAAGCACCGAGAATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCACCGAGCATTA
* * * *
7023656 GCGGTGCTTTTCCAAAAACGCCGCAAAAAG-ACTAGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGC-TAAAGCAC-CGAGCATTA
* *
7023698 GCGGCGC-TTTTCTAAAAATGCCGCTAAAG-ACTAGAGCATTA
1 GCGGCGCTTTTTC-AAAAACGCCGCTAAAGCAC-CGAGCATTA
* *
7023739 GCGGCGCTTTTTTAAAAACGCCGCCAAAGTC-CCGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAG-CACCGAGCATTA
**
7023780 GCGGCGCTTTTTCAAAAACATCGCTAAAG-ACCAGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCACC-GAGCATTA
* * *
7023821 ACGGTGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCACCGAGCATTA
* *
7023862 GCGGTGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCACCGAGCATTA
* * * *
7023903 GCGGTGCTTTTTCAAAAATGCCGCTAACGTC-CGGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAG-CACCGAGCATTA
* *
7023944 GCGGCGCTTTTTCAAAAACACCTCTAAAGC
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGC
7023974 CTAGAAAGGT
Statistics
Matches: 276, Mismatches: 32, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
40 3 0.01
41 238 0.86
42 35 0.13
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGCACCGAGCATTA
Found at i:7023871 original size:123 final size:122
Alignment explanation
Indices: 7023615--7023974 Score: 461
Period size: 123 Copynumber: 2.9 Consensus size: 122
7023605 AAATTTTTTT
* * *
7023615 GCGGCACTTTTTCAAAAACGCCGCTAAAGCACCGAGAATTAGCGGTGCTTTTCCAAAAACGCCGC
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGC-CCGAGCATTAGCGGTGCTTTTTCAAAAACGCCGC
* * * * *
7023680 AAAAAGACTAGAGCATTAGCGGCGC-TTTTCTAAAAATGCCGCTAAAGACTAGAGCATTA
65 -TAAAGACCAGAGCATTAGCGGCGCTTTTTC-AAAAACGCCGCTAAAGCCCAGAGCATTA
* * * **
7023739 GCGGCGCTTTTTTAAAAACGCCGCCAAAGTCCCGAGCATTAGCGGCGCTTTTTCAAAAACATCGC
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAG-CCCGAGCATTAGCGGTGCTTTTTCAAAAACGCCGC
* * *
7023804 TAAAGACCAGAGCATTAACGGTGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTA
65 TAAAGACCAGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCAGAGCATTA
* *
7023862 GCGGTGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGTGCTTTTTCAAAAATGCCGC
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAG-CCCGAGCATTAGCGGTGCTTTTTCAAAAACGCCGC
* * * * *
7023927 TAACGTCCGGAGCATTAGCGGCGCTTTTTCAAAAACACCTCTAAAGCC
65 TAAAGACCAGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCC
7023975 TAGAAAGGTC
Statistics
Matches: 203, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
123 142 0.70
124 60 0.30
125 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (122 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCGAGCATTAGCGGTGCTTTTTCAAAAACGCCGCT
AAAGACCAGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCAGAGCATTA
Found at i:7023973 original size:82 final size:82
Alignment explanation
Indices: 7023615--7023974 Score: 454
Period size: 82 Copynumber: 4.4 Consensus size: 82
7023605 AAATTTTTTT
* * *
7023615 GCGGCACTTTTTCAAAAACGCCGCTAAAGCACC-GAGAATTAGCGGTGCTTTTCCAAAAACGCCG
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGC-CCAGAGCATTAGCGGTGCTTTTTCAAAAACGCCG
* * **
7023679 CAAAAAGACTAGAGCATTA
65 C-TAAAGTCCCGAGCATTA
* * * * *
7023698 GCGGCGC-TTTTCTAAAAATGCCGCTAAAGACTAGAGCATTAGCGGCGCTTTTTTAAAAACGCCG
1 GCGGCGCTTTTTC-AAAAACGCCGCTAAAGCCCAGAGCATTAGCGGTGCTTTTTCAAAAACGCCG
*
7023762 CCAAAGTCCCGAGCATTA
65 CTAAAGTCCCGAGCATTA
** * *
7023780 GCGGCGCTTTTTCAAAAACATCGCTAAAGACCAGAGCATTAACGGTGCTTTTTCAAAAACGCCGC
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCAGAGCATTAGCGGTGCTTTTTCAAAAACGCCGC
*
7023845 TAAAGCCCCGAGCATTA
66 TAAAGTCCCGAGCATTA
* * *
7023862 GCGGTGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGTGCTTTTTCAAAAATGCCGC
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCAGAGCATTAGCGGTGCTTTTTCAAAAACGCCGC
* *
7023927 TAACGTCCGGAGCATTA
66 TAAAGTCCCGAGCATTA
* *
7023944 GCGGCGCTTTTTCAAAAACACCTCTAAAGCC
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCC
7023975 TAGAAAGGTC
Statistics
Matches: 240, Mismatches: 34, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
82 186 0.77
83 54 0.22
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (82 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCAGAGCATTAGCGGTGCTTTTTCAAAAACGCCGC
TAAAGTCCCGAGCATTA
Found at i:7031279 original size:19 final size:18
Alignment explanation
Indices: 7031257--7031310 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 18
7031247 GGATGAGCAA
7031257 GAAAAGAAAAATGAAAAAT
1 GAAAAGAAAAA-GAAAAAT
*
7031276 GAAAAG-AAGAGAAAAAT
1 GAAAAGAAAAAGAAAAAT
7031293 GACAAAGAAAAAGAAAAA
1 GA-AAAGAAAAAGAAAAA
7031311 GAGTCAGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 9 0.29
18 7 0.23
19 15 0.48
ACGTcount: A:0.74, C:0.02, G:0.19, T:0.06
Consensus pattern (18 bp):
GAAAAGAAAAAGAAAAAT
Found at i:7031282 original size:24 final size:24
Alignment explanation
Indices: 7031255--7031309 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
7031245 ACGGATGAGC
7031255 AAGAAAAGAAAAATGAAAAATG-AA
1 AAGAAAAGAAAAATGAAAAA-GAAA
* *
7031279 AAGAAGAGAAAAATGACAAAGAAA
1 AAGAAAAGAAAAATGAAAAAGAAA
7031303 AAGAAAA
1 AAGAAAA
7031310 AGAGTCAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 1 0.04
24 26 0.96
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (24 bp):
AAGAAAAGAAAAATGAAAAAGAAA
Found at i:7031310 original size:6 final size:6
Alignment explanation
Indices: 7031258--7031312 Score: 51
Period size: 6 Copynumber: 9.0 Consensus size: 6
7031248 GATGAGCAAG
* *
7031258 AAAAGA AAAATGA AAAATG- AAAAG- AAGAGA AAAATGA CAAAGA AAAAGA
1 AAAAGA AAAA-GA AAAA-GA AAAAGA AAAAGA AAAA-GA AAAAGA AAAAGA
7031307 AAAAGA
1 AAAAGA
7031313 GTCAGAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
5 5 0.12
6 24 0.57
7 13 0.31
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (6 bp):
AAAAGA
Found at i:7033501 original size:20 final size:20
Alignment explanation
Indices: 7033473--7033512 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7033463 TTAAATAGGT
*
7033473 GGCTAGACATTCATTTATGC
1 GGCTAGACATTCATTCATGC
*
7033493 GGCTGGACATTCATTCATGC
1 GGCTAGACATTCATTCATGC
7033513 ATGTTGCCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.33
Consensus pattern (20 bp):
GGCTAGACATTCATTCATGC
Found at i:7042009 original size:14 final size:14
Alignment explanation
Indices: 7041990--7042022 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
7041980 TTGCCATTTT
7041990 CCAATATTTAATTA
1 CCAATATTTAATTA
7042004 CCAATATTTAATTA
1 CCAATATTTAATTA
7042018 CCAAT
1 CCAAT
7042023 TGTAACACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (14 bp):
CCAATATTTAATTA
Found at i:7047081 original size:37 final size:36
Alignment explanation
Indices: 7047006--7047132 Score: 123
Period size: 37 Copynumber: 3.4 Consensus size: 36
7046996 AGTACAGTAG
* *
7047006 TTCAGTATATTTAATAGATAATACTCGATTGAGC-TTA
1 TTCAGTATA-TCAATAGATAACACTCG-TTGAGCTTTA
*
7047043 TTCAGTATATCAATAAATAACACTCAGTTGAGCTTTA
1 TTCAGTATATCAATAGATAACACTC-GTTGAGCTTTA
* * * *
7047080 TTCAGTATATTAGTAGATATCGCTCGGTTGAGCTTTA
1 TTCAGTATATCAATAGATAACACTC-GTTGAGCTTTA
*
7047117 GTC-GATATATCAATAG
1 TTCAG-TATATCAATAG
7047133 GTAATGCTCA
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
36 20 0.27
37 55 0.73
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (36 bp):
TTCAGTATATCAATAGATAACACTCGTTGAGCTTTA
Found at i:7047147 original size:37 final size:37
Alignment explanation
Indices: 7047034--7047148 Score: 110
Period size: 37 Copynumber: 3.1 Consensus size: 37
7047024 TAATACTCGA
* * * *
7047034 TTGAGC-TTATTCAGTATATCAATAAATAACACTCAG
1 TTGAGCTTTAGTCAGTATATCAATAGATATCGCTCAG
* * * *
7047070 TTGAGCTTTATTCAGTATATTAGTAGATATCGCTCGG
1 TTGAGCTTTAGTCAGTATATCAATAGATATCGCTCAG
*
7047107 TTGAGCTTTAGTC-GATATATCAATAGGTAAT-GCTCAG
1 TTGAGCTTTAGTCAG-TATATCAATAGAT-ATCGCTCAG
7047144 TTGAG
1 TTGAG
7047149 TAACACTCAA
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
36 7 0.11
37 56 0.86
38 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (37 bp):
TTGAGCTTTAGTCAGTATATCAATAGATATCGCTCAG
Found at i:7048619 original size:40 final size:40
Alignment explanation
Indices: 7048544--7048628 Score: 118
Period size: 41 Copynumber: 2.1 Consensus size: 40
7048534 AAATTGGCAA
* *
7048544 GGGAGGAGAGCATTGAAAAAAGAAAATAGAAGAATAAATAG
1 GGGATGAGAGAATTGAAAAAAGAAAATAGAAGAATAAAT-G
* *
7048585 GGGATGAGAGAATTGAAAAAAGATAAT-GAGGAATAAATG
1 GGGATGAGAGAATTGAAAAAAGAAAATAGAAGAATAAATG
7048624 GGGAT
1 GGGAT
7048629 AATACGTAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 6 0.15
40 10 0.25
41 24 0.60
ACGTcount: A:0.52, C:0.01, G:0.32, T:0.15
Consensus pattern (40 bp):
GGGATGAGAGAATTGAAAAAAGAAAATAGAAGAATAAATG
Found at i:7053670 original size:126 final size:126
Alignment explanation
Indices: 7053146--7053668 Score: 782
Period size: 126 Copynumber: 4.2 Consensus size: 126
7053136 TAAGGTCAAG
* *
7053146 CAAGAACTACTGTAGAAAAAGAGCGTCCACA-TGAGAGTTTTTTTTAATACTTTTGCTGACAGTG
1 CAAGAACTACTGTAGAAAAAGAGCGTCCA-AGTGGGAGCTTTTTTTAATACTTTTGCTGACAGTG
* *
7053210 CATCCTGCTTGAAGCATTTTTGACGCTATTTTTTCAGAACCGTCTTTTCAAAATTATTTTTT
65 CATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* ** * * *
7053272 CAGGAACTACT-TAGAAAAAGAGCGTTTAAGTGGGAGCTTTTTTCAATACTTTTGTTGACAATGC
1 CAAGAACTACTGTAGAAAAAGAGCGTCCAAGTGGGAGCTTTTTTTAATACTTTTGCTGACAGTGC
*
7053336 ATCCTACTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * * * *
7053397 CAAGAACTATTGTAGAAAAAGAGCGTCTAAGTGGGAGCTTTTTTGAGTTCTTTTGCTGACAGTGC
1 CAAGAACTACTGTAGAAAAAGAGCGTCCAAGTGGGAGCTTTTTTTAATACTTTTGCTGACAGTGC
* *
7053462 ATCCTGCTTGAAGCGTTTTTGTCACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * * * *
7053523 CAAGAACTACTGTAGAAAAAAAGTGTCCAAGTGGGAGATTTTTTTAGTACTTTTGCTTACAGTGC
1 CAAGAACTACTGTAGAAAAAGAGCGTCCAAGTGGGAGCTTTTTTTAATACTTTTGCTGACAGTGC
* *
7053588 ATCCTGCTTGAAGCGTTTTTGTCACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
7053649 C-AGAAACTACTGTAGAAAAA
1 CAAG-AACTACTGTAGAAAAA
7053669 AACAAAATCC
Statistics
Matches: 364, Mismatches: 30, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
124 1 0.00
125 113 0.31
126 250 0.69
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (126 bp):
CAAGAACTACTGTAGAAAAAGAGCGTCCAAGTGGGAGCTTTTTTTAATACTTTTGCTGACAGTGC
ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
Found at i:7053806 original size:34 final size:35
Alignment explanation
Indices: 7053767--7053851 Score: 145
Period size: 34 Copynumber: 2.4 Consensus size: 35
7053757 TTTAAAATTT
7053767 CTAAACCCTAATTTAATTAATTTTT-AAAAAAATC
1 CTAAACCCTAATTTAATTAATTTTTAAAAAAAATC
*
7053801 TTAAACCCTAATTTAATTAATTTTTAAAAAAAAATC
1 CTAAACCCTAATTTAATTAATTTTT-AAAAAAAATC
7053837 CTAAACCCTAATTTA
1 CTAAACCCTAATTTA
7053852 TTTTTTAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
34 24 0.51
36 23 0.49
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (35 bp):
CTAAACCCTAATTTAATTAATTTTTAAAAAAAATC
Found at i:7053861 original size:27 final size:28
Alignment explanation
Indices: 7053831--7053890 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
7053821 TTTTTAAAAA
7053831 AAAAT-CCTAAACCCTAATTTATTTTTT
1 AAAATCCCTAAACCCTAATTTATTTTTT
*
7053858 AAAATCCCTAAACCTTAATTTATTTTTT
1 AAAATCCCTAAACCCTAATTTATTTTTT
7053886 AAAAT
1 AAAAT
7053891 ATCTAACCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 5 0.16
28 26 0.84
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (28 bp):
AAAATCCCTAAACCCTAATTTATTTTTT
Done.