Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 22 of 79
Found at i:7450347 original size:13 final size:13
Alignment explanation
Indices: 7450315--7450350 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
7450305 TCAAGTATCA
* *
7450315 ATTTCAAATGACC
1 ATTTCATATAACC
7450328 ATTTCATATAACC
1 ATTTCATATAACC
7450341 ATTTCATATA
1 ATTTCATATA
7450351 TATATTATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.39, C:0.19, G:0.03, T:0.39
Consensus pattern (13 bp):
ATTTCATATAACC
Found at i:7453604 original size:22 final size:22
Alignment explanation
Indices: 7453574--7453616 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7453564 AAGAGAGAAT
* * *
7453574 GATGCTTGATGGATGCTTGAGG
1 GATGATTGATGAATGATTGAGG
7453596 GATGATTGATGAATGATTGAG
1 GATGATTGATGAATGATTGAG
7453617 AGGGTCTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.05, G:0.37, T:0.33
Consensus pattern (22 bp):
GATGATTGATGAATGATTGAGG
Found at i:7454648 original size:27 final size:28
Alignment explanation
Indices: 7454618--7454673 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
7454608 AAGCTATCCC
*
7454618 TTCATAATT-AGCCACAAAGGTG-TTCTT
1 TTCAT-ATTGAGCCACAAAGGCGTTTCTT
*
7454645 TTCATATTGCGCCACAAAGGCGTTTCTT
1 TTCATATTGAGCCACAAAGGCGTTTCTT
7454673 T
1 T
7454674 CTTGACGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 3 0.12
27 16 0.64
28 6 0.24
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (28 bp):
TTCATATTGAGCCACAAAGGCGTTTCTT
Found at i:7461574 original size:58 final size:58
Alignment explanation
Indices: 7461322--7461573 Score: 362
Period size: 58 Copynumber: 4.4 Consensus size: 58
7461312 GTACGTAGCA
* * ** *
7461322 TAAGACCATAGATGAAAGATCCCATGATGG-ATGGTACAAGGTATAAGGTATTCGGTG
1 TAAGACCATGGATGAAAGATGCCATGGCGGCATGGTACAAGGTATAAGGTATTTGGTG
* *
7461379 TAAGACCATGGATGAAAGATGCCATGGCGACATGGTACAAGGTATAAAGTATTTGGTG
1 TAAGACCATGGATGAAAGATGCCATGGCGGCATGGTACAAGGTATAAGGTATTTGGTG
*
7461437 TAAGACCATGGATGAAAGATGCCATGGCTGCATGGTACAAGGTATAAGGTATTTGGTG
1 TAAGACCATGGATGAAAGATGCCATGGCGGCATGGTACAAGGTATAAGGTATTTGGTG
* * * * *
7461495 TAAAACCATGGATGAAAGATGTCATGGCGGCATGGTACAAGGTATAAGGTATATAGCG
1 TAAGACCATGGATGAAAGATGCCATGGCGGCATGGTACAAGGTATAAGGTATTTGGTG
* *
7461553 TAAGACTATAGATGAAAGATG
1 TAAGACCATGGATGAAAGATG
7461574 TTATGACAGT
Statistics
Matches: 175, Mismatches: 19, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
57 25 0.14
58 150 0.86
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (58 bp):
TAAGACCATGGATGAAAGATGCCATGGCGGCATGGTACAAGGTATAAGGTATTTGGTG
Found at i:7461589 original size:58 final size:57
Alignment explanation
Indices: 7461322--7461678 Score: 304
Period size: 58 Copynumber: 6.4 Consensus size: 57
7461312 GTACGTAGCA
* * * *
7461322 TAAGACCATAGATGAAAGATCCCATGA-TGGATGGTACAAGGTATAAGGTATTCGGTG
1 TAAGACCATGGATGAAAGATGCCATGACAGCATGGTACAAGGTATAAGGTATT-GGTG
* *
7461379 TAAGACCATGGATGAAAGATGCCATGGC-GACATGGTACAAGGTATAAAGTATTTGGTG
1 TAAGACCATGGATGAAAGATGCCATGACAG-CATGGTACAAGGTATAAGGTA-TTGGTG
* *
7461437 TAAGACCATGGATGAAAGATGCCATGGCTGCATGGTACAAGGTATAAGGTATTTGGTG
1 TAAGACCATGGATGAAAGATGCCATGACAGCATGGTACAAGGTATAAGGTA-TTGGTG
* * * * * *
7461495 TAAAACCATGGATGAAAGATGTCATGGCGGCATGGTACAAGGTATAAGGTATATAGCG
1 TAAGACCATGGATGAAAGATGCCATGACAGCATGGTACAAGGTATAAGGTAT-TGGTG
* * ** ** ** * *
7461553 TAAGACTATAGATGAAAGATGTTATGACAGTTTGGTATGAGG--T-ACGTA-T--CG
1 TAAGACCATGGATGAAAGATGCCATGACAGCATGGTACAAGGTATAAGGTATTGGTG
* ** * * *
7461604 TAAGACTATGGATGAAAGATGCCACAACGGTATGGTACAAGGTAT---GTATTAGTG
1 TAAGACCATGGATGAAAGATGCCATGACAGCATGGTACAAGGTATAAGGTATTGGTG
* *
7461658 TAGGACCATAGATGAAAGATG
1 TAAGACCATGGATGAAAGATG
7461679 TTATGACATC
Statistics
Matches: 255, Mismatches: 35, Indels: 23
0.81 0.11 0.07
Matches are distributed among these distances:
51 38 0.15
52 1 0.00
53 2 0.01
54 19 0.07
55 4 0.02
56 1 0.00
57 26 0.10
58 161 0.63
59 3 0.01
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.25
Consensus pattern (57 bp):
TAAGACCATGGATGAAAGATGCCATGACAGCATGGTACAAGGTATAAGGTATTGGTG
Found at i:7461647 original size:51 final size:51
Alignment explanation
Indices: 7461551--7461652 Score: 114
Period size: 51 Copynumber: 2.0 Consensus size: 51
7461541 AGGTATATAG
** ** * **
7461551 CGTAAGACTATAGATGAAAGATGTTATGACAGTTTGGTATGAGGTACGTAT
1 CGTAAGACTATAGATGAAAGATGCCACAACAGTATGGTACAAGGTACGTAT
* * *
7461602 CGTAAGACTATGGATGAAAGATGCCACAACGGTATGGTACAAGGTATGTAT
1 CGTAAGACTATAGATGAAAGATGCCACAACAGTATGGTACAAGGTACGTAT
7461653 TAGTGTAGGA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.27
Consensus pattern (51 bp):
CGTAAGACTATAGATGAAAGATGCCACAACAGTATGGTACAAGGTACGTAT
Found at i:7461836 original size:31 final size:31
Alignment explanation
Indices: 7461801--7461865 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
7461791 GTATCCACAA
* * *
7461801 AGATAGTCCGCTAGGACAGTAAACACAGAAT
1 AGATAGTCCACTAAGACAGTAAACACAAAAT
*
7461832 AGATAGTCCACTAAGATAGTAAACACAAAAT
1 AGATAGTCCACTAAGACAGTAAACACAAAAT
7461863 AGA
1 AGA
7461866 GATAGCCCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (31 bp):
AGATAGTCCACTAAGACAGTAAACACAAAAT
Found at i:7463850 original size:20 final size:20
Alignment explanation
Indices: 7463825--7463862 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7463815 CCTATGATCG
* *
7463825 ATTAAATCATTACTTATCTA
1 ATTAAATAATTAATTATCTA
7463845 ATTAAATAATTAATTATC
1 ATTAAATAATTAATTATC
7463863 CTCGATTGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTAAATAATTAATTATCTA
Found at i:7466879 original size:28 final size:28
Alignment explanation
Indices: 7466839--7466894 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
7466829 CGTACAATAG
7466839 GGATCTAATTAAATAAAATGAAAAATTT
1 GGATCTAATTAAATAAAATGAAAAATTT
7466867 GGATCTAATTAAATAAAATGAAAAATTT
1 GGATCTAATTAAATAAAATGAAAAATTT
7466895 TCATAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.54, C:0.04, G:0.11, T:0.32
Consensus pattern (28 bp):
GGATCTAATTAAATAAAATGAAAAATTT
Found at i:7466904 original size:28 final size:28
Alignment explanation
Indices: 7466845--7466904 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
7466835 ATAGGGATCT
* **
7466845 AATTAAATAAAATGAAAAATTTGGATCT
1 AATTAAATAAAATGAAAAATTTGCATAA
*
7466873 AATTAAATAAAATGAAAAATTTTCATAA
1 AATTAAATAAAATGAAAAATTTGCATAA
7466901 AATT
1 AATT
7466905 TTGGTAGGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (28 bp):
AATTAAATAAAATGAAAAATTTGCATAA
Found at i:7471001 original size:32 final size:32
Alignment explanation
Indices: 7470928--7471194 Score: 223
Period size: 32 Copynumber: 8.4 Consensus size: 32
7470918 GAATGGCTAC
* * * * *
7470928 AAGCCATAAGT-ACAGTAATGTGATTGGAACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
*
7470959 AAGCCATCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* ** * *
7470991 CAGCCATCAGTAATGGTAACATGATCGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* ** *
7471023 AAGCCATTAGTGGCAGTGATATGATTGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * *
7471055 CAGCCATCAATAACAGTGAAATGATCGGTACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * *
7471087 CAGCCATCGGTAACAGTAATATGATCGGTACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * *
7471119 AAGCCATTAGTAACAGTGAAATGATCGACACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * ** *
7471151 CATCTATTGGTAACGGT-ACTATGATCGGCACA
1 AAGCCATCAGTAACAGTGA-TATGATCGGCACA
7471183 AAGCCATCAGTA
1 AAGCCATCAGTA
7471195 GCATCGCAGC
Statistics
Matches: 182, Mismatches: 52, Indels: 3
0.77 0.22 0.01
Matches are distributed among these distances:
31 11 0.06
32 171 0.94
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTGATATGATCGGCACA
Found at i:7471112 original size:96 final size:96
Alignment explanation
Indices: 7470948--7471152 Score: 266
Period size: 96 Copynumber: 2.1 Consensus size: 96
7470938 TACAGTAATG
* * * * * **
7470948 TGATTGGAACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAATGGTAACAT
1 TGATTGGCACACAGCCATCAATAACAGTGAAATGATCGGCACACAGCCATCAGTAACAGTAACAT
** *
7471013 GATCGGCACAAAGCCATTAGTGGCAGTGATA
66 GATCGGCACAAAGCCATTAGTAACAGTGAAA
* * *
7471044 TGATTGGCACACAGCCATCAATAACAGTGAAATGATCGGTACACAGCCATCGGTAACAGTAATAT
1 TGATTGGCACACAGCCATCAATAACAGTGAAATGATCGGCACACAGCCATCAGTAACAGTAACAT
*
7471109 GATCGGTACAAAGCCATTAGTAACAGTGAAA
66 GATCGGCACAAAGCCATTAGTAACAGTGAAA
* *
7471140 TGATCGACACACA
1 TGATTGGCACACA
7471153 TCTATTGGTA
Statistics
Matches: 93, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (96 bp):
TGATTGGCACACAGCCATCAATAACAGTGAAATGATCGGCACACAGCCATCAGTAACAGTAACAT
GATCGGCACAAAGCCATTAGTAACAGTGAAA
Found at i:7471175 original size:96 final size:96
Alignment explanation
Indices: 7470960--7471194 Score: 265
Period size: 96 Copynumber: 2.4 Consensus size: 96
7470950 ATTGGAACAA
* * **
7470960 AGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAATGGTAACATGATCGGCACAAA
1 AGCCATCAATAACAGTGATATGATCGGCACACAGCCATCAGTAACAGTAACATGATCGGCACAAA
** * * *
7471025 GCCATTAGTGGCAGTGATATGATTGGCACAC
66 GCCATTAGTAACAGTGAAATGATCGACACAC
* * * * *
7471056 AGCCATCAATAACAGTGAAATGATCGGTACACAGCCATCGGTAACAGTAATATGATCGGTACAAA
1 AGCCATCAATAACAGTGATATGATCGGCACACAGCCATCAGTAACAGTAACATGATCGGCACAAA
7471121 GCCATTAGTAACAGTGAAATGATCGACACAC
66 GCCATTAGTAACAGTGAAATGATCGACACAC
* * *** * *
7471152 ATCTATTGGTAACGGT-ACTATGATCGGCACAAAGCCATCAGTA
1 AGCCATCAATAACAGTGA-TATGATCGGCACACAGCCATCAGTA
7471195 GCATCGCAGC
Statistics
Matches: 114, Mismatches: 24, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
95 1 0.01
96 113 0.99
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (96 bp):
AGCCATCAATAACAGTGATATGATCGGCACACAGCCATCAGTAACAGTAACATGATCGGCACAAA
GCCATTAGTAACAGTGAAATGATCGACACAC
Found at i:7471226 original size:26 final size:26
Alignment explanation
Indices: 7471197--7471250 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
7471187 CATCAGTAGC
7471197 ATCGCAGCAAAGCTGCCAGCAACAGT
1 ATCGCAGCAAAGCTGCCAGCAACAGT
* * * *
7471223 ATCGCAGTAAAGTTGCCAGTAATAGT
1 ATCGCAGCAAAGCTGCCAGCAACAGT
7471249 AT
1 AT
7471251 ATGTGGTCAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
ATCGCAGCAAAGCTGCCAGCAACAGT
Found at i:7471269 original size:27 final size:27
Alignment explanation
Indices: 7471238--7471328 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
7471228 AGTAAAGTTG
*
7471238 CCAGTAATAGT-ATATGTGGTCAGGCCA
1 CCAGTAACAGTGAT-TGTGGTCAGGCCA
7471265 CCAGTAACAGTGATTGTGGTCAGGCCA
1 CCAGTAACAGTGATTGTGGTCAGGCCA
7471292 CCAGTAACAGTGATTGTGGT-AGAGCCA
1 CCAGTAACAGTGATTGTGGTCAG-GCCA
*
7471319 CTAGT-ACAGT
1 CCAGTAACAGT
7471329 ACTTCCTCCA
Statistics
Matches: 60, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
26 7 0.12
27 51 0.85
28 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTGGTCAGGCCA
Found at i:7471467 original size:24 final size:23
Alignment explanation
Indices: 7471393--7471465 Score: 83
Period size: 24 Copynumber: 3.1 Consensus size: 23
7471383 CCATGCTCAG
* *
7471393 AATCAGTCATTCAAATCACAAACA
1 AATCAGTCATTTAAA-CACAGACA
**
7471417 AATCAGTCATACCAAACACAGACA
1 AATCAGTCAT-TTAAACACAGACA
*
7471441 AATCAGTCATTTAACCACAGACA
1 AATCAGTCATTTAAACACAGACA
7471464 AA
1 AA
7471466 ATAATCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
23 12 0.28
24 27 0.63
25 4 0.09
ACGTcount: A:0.49, C:0.26, G:0.07, T:0.18
Consensus pattern (23 bp):
AATCAGTCATTTAAACACAGACA
Found at i:7471550 original size:27 final size:27
Alignment explanation
Indices: 7471515--7471614 Score: 164
Period size: 27 Copynumber: 3.7 Consensus size: 27
7471505 CCACCAAGGC
*
7471515 ATTATGGTCATTTTACCCTACAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
*
7471542 ATTACGGTCATTTTACCCTACAGGGGA
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
7471569 ATTACAGTCATTTTACCTTACAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
7471596 ATTACGGTCATTTTACCCT
1 ATTACGGTCATTTTACCCT
7471615 CATATGGATG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
ATTACGGTCATTTTACCCTACAGGGGT
Found at i:7471767 original size:27 final size:27
Alignment explanation
Indices: 7471732--7472001 Score: 236
Period size: 27 Copynumber: 10.1 Consensus size: 27
7471722 TTGGGCCTAT
7471732 GGTCATTTTACCCTATAGGGGTATTAT-
1 GGTCATTTTACCCTATAGGGGTATT-TC
*
7471759 GGTCATTTTGCCCTATA-GGGTATTTC
1 GGTCATTTTACCCTATAGGGGTATTTC
* *
7471785 GAT-ATTCTACCCTAT-GGGGTATTTC
1 GGTCATTTTACCCTATAGGGGTATTTC
* * *
7471810 GGT-ATTCTACCTTACAGGGGTATTTC
1 GGTCATTTTACCCTATAGGGGTATTTC
* *
7471836 AGTCATTTTACCCTAT-GGGGACATTTC
1 GGTCATTTTACCCTATAGGGG-TATTTC
* *
7471863 AGTCATTTTACCC-ATCGAGGGTATTTC
1 GGTCATTTTACCCTATAG-GGGTATTTC
** * * *
7471890 GGTCATTTTATTC-ATCGAGAGTATTTT
1 GGTCATTTTACCCTATAG-GGGTATTTC
*
7471917 GGTCATTTTACCCT-TCGAGGGTATTTC
1 GGTCATTTTACCCTATAG-GGGTATTTC
* *
7471944 AGTCATTTTACCC-ATCGAGGGTATTTC
1 GGTCATTTTACCCTATAG-GGGTATTTC
* *
7471971 TGTCATTTTACCCTTTAGGGGTATTTC
1 GGTCATTTTACCCTATAGGGGTATTTC
7471998 GGTC
1 GGTC
7472002 TAGATATCGA
Statistics
Matches: 206, Mismatches: 27, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
25 32 0.16
26 27 0.13
27 142 0.69
28 5 0.02
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (27 bp):
GGTCATTTTACCCTATAGGGGTATTTC
Found at i:7471804 original size:25 final size:25
Alignment explanation
Indices: 7471769--7471855 Score: 95
Period size: 25 Copynumber: 3.4 Consensus size: 25
7471759 GGTCATTTTG
*
7471769 CCCTATAGGGTATTTCGATATTCTA
1 CCCTATGGGGTATTTCGATATTCTA
*
7471794 CCCTATGGGGTATTTCGGTATTCTA
1 CCCTATGGGGTATTTCGATATTCTA
* * *
7471819 CCTTACAGGGGTATTTC-AGTCATTTTA
1 CCCTA-TGGGGTATTTCGA-T-ATTCTA
7471846 CCCTATGGGG
1 CCCTATGGGG
7471856 ACATTTCAGT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
25 27 0.53
26 15 0.29
27 9 0.18
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.38
Consensus pattern (25 bp):
CCCTATGGGGTATTTCGATATTCTA
Found at i:7471995 original size:81 final size:81
Alignment explanation
Indices: 7471732--7472001 Score: 290
Period size: 81 Copynumber: 3.4 Consensus size: 81
7471722 TTGGGCCTAT
* *
7471732 GGTCATTTTACCCTATAGGGGTATTAT-GGTCATTTTGCCCTAT-AGGGTATTTC-GAT-ATTCT
1 GGTCATTTTACCCTATAGGGGTATT-TCGGTCATTTTACCCTATGAGGGTATTTCAG-TCATTTT
7471793 ACCCTAT-G-GGGTATTTC
64 ACCC-ATCGAGGGTATTTC
* * * * *
7471810 GGT-ATTCTACCTTACAGGGGTATTTCAGTCATTTTACCCTATG-GGGACATTTCAGTCATTTTA
1 GGTCATTTTACCCTATAGGGGTATTTCGGTCATTTTACCCTATGAGGG-TATTTCAGTCATTTTA
7471873 CCCATCGAGGGTATTTC
65 CCCATCGAGGGTATTTC
** * * *
7471890 GGTCATTTTATTC-ATCGAGAGTATTTTGGTCATTTTACCCT-TCGAGGGTATTTCAGTCATTTT
1 GGTCATTTTACCCTATAG-GGGTATTTCGGTCATTTTACCCTAT-GAGGGTATTTCAGTCATTTT
7471953 ACCCATCGAGGGTATTTC
64 ACCCATCGAGGGTATTTC
* *
7471971 TGTCATTTTACCCTTTAGGGGTATTTCGGTC
1 GGTCATTTTACCCTATAGGGGTATTTCGGTC
7472002 TAGATATCGA
Statistics
Matches: 156, Mismatches: 24, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
76 1 0.01
77 35 0.22
78 11 0.07
79 10 0.06
80 15 0.10
81 79 0.51
82 5 0.03
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (81 bp):
GGTCATTTTACCCTATAGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCAGTCATTTTAC
CCATCGAGGGTATTTC
Found at i:7474553 original size:33 final size:32
Alignment explanation
Indices: 7474533--7474658 Score: 126
Period size: 33 Copynumber: 3.8 Consensus size: 32
7474523 ACATTTGTAG
*
7474533 TGCCATAACCCAGTTATGGTCTTATCATCAGAA
1 TGCCATAACCCAGCTATGGTCTTA-CATCAGAA
* * * *
7474566 TGTCATAGCCCAGCTATGGTCTTACATCCATAG
1 TGCCATAACCCAGCTATGGTCTTACAT-CAGAA
* ** * *
7474599 TGTCATAACCCAATTATGGTTTTATCACCAGAA
1 TGCCATAACCCAGCTATGGTCTTA-CATCAGAA
*
7474632 TGCCATAGCCCAGCTATGGTCTTACAT
1 TGCCATAACCCAGCTATGGTCTTACAT
7474659 ATAAATACCG
Statistics
Matches: 73, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
32 5 0.07
33 66 0.90
34 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (32 bp):
TGCCATAACCCAGCTATGGTCTTACATCAGAA
Found at i:7474586 original size:66 final size:66
Alignment explanation
Indices: 7474516--7474658 Score: 214
Period size: 66 Copynumber: 2.2 Consensus size: 66
7474506 GGCCCTACCG
*** * * *
7474516 TGGTCTTACATTTGTAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGTCATAGCCCAGCT
1 TGGTCTTACATCCATAGTGCCATAACCCAATTATGGTCTTATCACCAGAATGCCATAGCCCAGCT
7474581 A
66 A
* *
7474582 TGGTCTTACATCCATAGTGTCATAACCCAATTATGGTTTTATCACCAGAATGCCATAGCCCAGCT
1 TGGTCTTACATCCATAGTGCCATAACCCAATTATGGTCTTATCACCAGAATGCCATAGCCCAGCT
7474647 A
66 A
7474648 TGGTCTTACAT
1 TGGTCTTACAT
7474659 ATAAATACCG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.33
Consensus pattern (66 bp):
TGGTCTTACATCCATAGTGCCATAACCCAATTATGGTCTTATCACCAGAATGCCATAGCCCAGCT
A
Found at i:7476870 original size:14 final size:13
Alignment explanation
Indices: 7476843--7476877 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
7476833 TTTACATATT
7476843 TTTATATTTTAAAA
1 TTTA-ATTTTAAAA
7476857 TTTAATTTTAAAA
1 TTTAATTTTAAAA
*
7476870 ATTAATTT
1 TTTAATTT
7476878 AATCTATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTAATTTTAAAA
Found at i:7477411 original size:183 final size:183
Alignment explanation
Indices: 7477097--7477456 Score: 558
Period size: 183 Copynumber: 2.0 Consensus size: 183
7477087 TAATTTTATA
*
7477097 AAAAAAAATCTAATTTAATTGTGCATATTAAATTTAAATAAATTTCTAAATTTAATAATAATGTG
1 AAAAAAAATCTAATTTAATTGTGCATATTAAATTTAAATAAATTTCTAAATTTAATAATAATATG
* * * *
7477162 AGTGATGCAATAATAATATTTTAAAATATAAAATATGTAAGTAAACTTGGGAAATAAAAAAGATG
66 AATGATACAATAATAATATTTTAAAATATAAAATATGTAAGTAAACTTAGAAAATAAAAAAGATG
** * * *
7477227 GGAAAACAAGGAGGGGTTAATGTTGCAATATTTTCATCCCTTTTGTTAGGTAT
131 GGAAAACAAAAAGAGGCTAATGTTGCAATATTATCATCCCTTTTGTTAGGTAT
* * * *
7477280 AAAAAGAATCTAATTTAATTGTGCATATTAACTTTAAATTAATTTTTAAATTTAATAATAATATG
1 AAAAAAAATCTAATTTAATTGTGCATATTAAATTTAAATAAATTTCTAAATTTAATAATAATATG
* * *
7477345 AATGATACAATAATATTATTTTAAAATATAAAATATGTAATTAAATTTAGAAAATAAAAAAGATG
66 AATGATACAATAATAATATTTTAAAATATAAAATATGTAAGTAAACTTAGAAAATAAAAAAGATG
*
7477410 GGAATACAAAAAGAGGCTAATGTTGCAATATTATCATCCCTTTTGTT
131 GGAAAACAAAAAGAGGCTAATGTTGCAATATTATCATCCCTTTTGTT
7477457 GAATGACTTT
Statistics
Matches: 159, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
183 159 1.00
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (183 bp):
AAAAAAAATCTAATTTAATTGTGCATATTAAATTTAAATAAATTTCTAAATTTAATAATAATATG
AATGATACAATAATAATATTTTAAAATATAAAATATGTAAGTAAACTTAGAAAATAAAAAAGATG
GGAAAACAAAAAGAGGCTAATGTTGCAATATTATCATCCCTTTTGTTAGGTAT
Found at i:7477604 original size:61 final size:59
Alignment explanation
Indices: 7477539--7477654 Score: 196
Period size: 61 Copynumber: 1.9 Consensus size: 59
7477529 GGTGACGGTT
*
7477539 ATTAATGTACCAACATCCCAAAAATAATTTCTTTTTGAAAAAAAATAAATGAATGCCGGCA
1 ATTAATGTACCAACATCCCAAAAATAATTTCGTTTTG-AAAAAAA-AAATGAATGCCGGCA
*
7477600 ATTAATGTACCAGCATCCCAAAAATAATTTCGTTTTGAAAAAAAAAATGAATGCC
1 ATTAATGTACCAACATCCCAAAAATAATTTCGTTTTGAAAAAAAAAATGAATGCC
7477655 AACCATCTAG
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
59 11 0.21
60 7 0.13
61 35 0.66
ACGTcount: A:0.46, C:0.16, G:0.10, T:0.28
Consensus pattern (59 bp):
ATTAATGTACCAACATCCCAAAAATAATTTCGTTTTGAAAAAAAAAATGAATGCCGGCA
Found at i:7486155 original size:70 final size:71
Alignment explanation
Indices: 7486069--7486216 Score: 187
Period size: 70 Copynumber: 2.1 Consensus size: 71
7486059 ATTAATAACT
* * * *
7486069 AATATGGATTAGAACCCTACAGAATAAGAGAA-AGAGCAATATTTCAAGAT-TTTGTCTTA-TTA
1 AATATGGATTAAAACCCTACAAAATAAGAGAACAGAGCAAGATTTCAAGATCTCTG-CTTACTT-
7486131 TCAATTTA
64 TCAATTTA
* * *
7486139 AATATGGATTAAAACCCTACAAAATAAGTGAACAGATCAAGATTTCAAGGTCTCTGCTTACTTTC
1 AATATGGATTAAAACCCTACAAAATAAGAGAACAGAGCAAGATTTCAAGATCTCTGCTTACTTTC
7486204 AATTTA
66 AATTTA
7486210 AAT-TGGA
1 AATATGGA
7486217 AAAATGAAAC
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
70 33 0.49
71 30 0.44
72 5 0.07
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (71 bp):
AATATGGATTAAAACCCTACAAAATAAGAGAACAGAGCAAGATTTCAAGATCTCTGCTTACTTTC
AATTTA
Found at i:7486667 original size:12 final size:12
Alignment explanation
Indices: 7486650--7486674 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7486640 GGTATAATAA
7486650 TTTTATAATATT
1 TTTTATAATATT
7486662 TTTTATAATATT
1 TTTTATAATATT
7486674 T
1 T
7486675 AATTTTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTATAATATT
Found at i:7487641 original size:18 final size:18
Alignment explanation
Indices: 7487620--7487659 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7487610 AAAAAAATTG
*
7487620 AATTGACTCAAATAACTC
1 AATTAACTCAAATAACTC
* *
7487638 AATTAACTTAAATAATTC
1 AATTAACTCAAATAACTC
7487656 AATT
1 AATT
7487660 CGTTTAACTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (18 bp):
AATTAACTCAAATAACTC
Found at i:7493040 original size:16 final size:15
Alignment explanation
Indices: 7492972--7493054 Score: 71
Period size: 15 Copynumber: 5.5 Consensus size: 15
7492962 ACTATAGAAT
*
7492972 ACTATAGATTATGAA
1 ACTATAGATTTTGAA
*
7492987 ACTCTAGATTTTGAAAA
1 ACTATAGATTTTG--AA
7493004 ACTAT--ATTTTGAA
1 ACTATAGATTTTGAA
* *
7493017 ACTTTAGATTCTGAAA
1 ACTATAGATTTTG-AA
* *
7493033 ACTATAGATATTGAT
1 ACTATAGATTTTGAA
7493048 ACTATAG
1 ACTATAG
7493055 TGACGAAACT
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
13 6 0.11
15 30 0.56
16 12 0.22
17 6 0.11
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (15 bp):
ACTATAGATTTTGAA
Found at i:7499766 original size:16 final size:18
Alignment explanation
Indices: 7499745--7499777 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
7499735 AACTTGGACA
7499745 TTGGAT-ATTTT-TAATT
1 TTGGATGATTTTATAATT
7499761 TTGGATGATTTTATAAT
1 TTGGATGATTTTATAAT
7499778 ATCATATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 5 0.33
18 4 0.27
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (18 bp):
TTGGATGATTTTATAATT
Found at i:7501911 original size:42 final size:42
Alignment explanation
Indices: 7501863--7502156 Score: 374
Period size: 42 Copynumber: 7.0 Consensus size: 42
7501853 AGCATTTACA
* *
7501863 AAAAAAAAAAGCCGCTAAAGATCATGTTCTTTAGCGGCGTTT
1 AAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
* *
7501905 AAAAAAAGACGCCGCTAAAGATCATGTTCTTTAGCGACGCTT
1 AAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
* *
7501947 AAAAAAAGACGCCGCTAAAGATCATGTTCTTTAGCGGCGGTT
1 AAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
** ** * *
7501989 TCAAAAAATTGCCACTAAAGATAATGTTCTTTAGCGGCGCTT
1 AAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
* * * * * *
7502031 AAAGATAAATGCTGCTAAAGATTATGTTCTTTAGTGGCGCTT
1 AAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
*
7502073 AAAGAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
1 AAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
** *
7502115 GGTAAAAAAA-GCCGCTATAGATCATGTTCTTTAGCGGCGCTT
1 -AAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
7502157 TTCATCACGA
Statistics
Matches: 219, Mismatches: 32, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
42 213 0.97
43 6 0.03
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (42 bp):
AAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
Found at i:7508669 original size:9 final size:9
Alignment explanation
Indices: 7508650--7508785 Score: 106
Period size: 9 Copynumber: 15.4 Consensus size: 9
7508640 TATTCGTGTA
*
7508650 TAAGCTATG
1 TAAGTTATG
*
7508659 TAAGTTGTG
1 TAAGTTATG
7508668 T-A-TTATG
1 TAAGTTATG
7508675 TAAGTTATG
1 TAAGTTATG
*
7508684 TAAGTTATC
1 TAAGTTATG
* *
7508693 AAAGTAATG
1 TAAGTTATG
*
7508702 TATGTTATG
1 TAAGTTATG
7508711 TAAG-T-TG
1 TAAGTTATG
7508718 TAAGTTAT-
1 TAAGTTATG
*
7508726 TATGTATTATG
1 TAAG--TTATG
7508737 TAAGTTATG
1 TAAGTTATG
7508746 TAAGTTAAATG
1 TAAGTT--ATG
7508757 T-A-TTATG
1 TAAGTTATG
*
7508764 TAGGTTATG
1 TAAGTTATG
*
7508773 TAAGTTGTG
1 TAAGTTATG
7508782 TAAG
1 TAAG
7508786 ATATTTANNN
Statistics
Matches: 100, Mismatches: 16, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
7 15 0.15
8 7 0.07
9 66 0.66
10 5 0.05
11 7 0.07
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:7508730 original size:19 final size:19
Alignment explanation
Indices: 7508706--7508744 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7508696 GTAATGTATG
7508706 TTATGTAAGT-TGTAAGTTA
1 TTATGT-AGTATGTAAGTTA
*
7508725 TTATGTATTATGTAAGTTA
1 TTATGTAGTATGTAAGTTA
7508744 T
1 T
7508745 GTAAGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (19 bp):
TTATGTAGTATGTAAGTTA
Found at i:7508840 original size:9 final size:9
Alignment explanation
Indices: 7508826--7509203 Score: 176
Period size: 9 Copynumber: 41.3 Consensus size: 9
7508816 NNNNNNTGTA
7508826 TAAGTTATG
1 TAAGTTATG
7508835 TAAGTTATG
1 TAAGTTATG
*
7508844 T-A-TTAAG
1 TAAGTTATG
*
7508851 TAAGCTATG
1 TAAGTTATG
*
7508860 TAAGTTGTG
1 TAAGTTATG
7508869 T-A-TTATG
1 TAAGTTATG
7508876 TAAGTTATG
1 TAAGTTATG
*
7508885 TAAGTTATC
1 TAAGTTATG
* **
7508894 AAAGAAATG
1 TAAGTTATG
*
7508903 TATGTTATG
1 TAAGTTATG
7508912 TAAG-T-TG
1 TAAGTTATG
7508919 TAAGTTAT-
1 TAAGTTATG
*
7508927 TATGTATTATG
1 TAAG--TTATG
7508938 TAAGTTATG
1 TAAGTTATG
7508947 TAAGTTAAATG
1 TAAGTT--ATG
7508958 T-A-TTATG
1 TAAGTTATG
*
7508965 TAGGTTATG
1 TAAGTTATG
*
7508974 TAAGTTGTG
1 TAAGTTATG
* *
7508983 TAAGATATT
1 TAAGTTATG
7508992 TAAGTTATG
1 TAAGTTATG
*
7509001 TAAGTTTTTG
1 TAAG-TTATG
7509011 T-A-TTATG
1 TAAGTTATG
7509018 TAAGTTATG
1 TAAGTTATG
*
7509027 TCAGTTATG
1 TAAGTTATG
* *
7509036 TATGCTATG
1 TAAGTTATG
7509045 T-A-TTATG
1 TAAGTTATG
7509052 TAAGTTGTTATG
1 TAA---GTTATG
* *
7509064 TTA-TTACG
1 TAAGTTATG
7509072 TAAGTTATG
1 TAAGTTATG
* *
7509081 CAAGTTTATATA
1 TAAG--T-TATG
*
7509093 TAAGCTTGTAG
1 TAAG-TTAT-G
*
7509104 ATAACTTATG
1 -TAAGTTATG
7509114 TAAGTTATG
1 TAAGTTATG
*
7509123 TCAGTTAATATG
1 TAAG-T--TATG
*
7509135 TAAGTAATG
1 TAAGTTATG
7509144 T-A-TTATG
1 TAAGTTATG
*
7509151 TAAGTTTATA
1 TAAG-TTATG
* *
7509161 TAAAAATTTTATA
1 T---AA-GTTATG
7509174 TAAGTTATG
1 TAAGTTATG
*
7509183 TAAGTAATG
1 TAAGTTATG
*
7509192 TAAGTAATG
1 TAAGTTATG
7509201 TAA
1 TAA
7509204 TAAATTTAAC
Statistics
Matches: 276, Mismatches: 56, Indels: 74
0.68 0.14 0.18
Matches are distributed among these distances:
7 35 0.13
8 19 0.07
9 157 0.57
10 21 0.08
11 13 0.05
12 23 0.08
13 8 0.03
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:7508860 original size:25 final size:25
Alignment explanation
Indices: 7508826--7508892 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
7508816 NNNNNNTGTA
7508826 TAAGTTATGTAAGTTATGTATTAAG
1 TAAGTTATGTAAGTTATGTATTAAG
* * *
7508851 TAAGCTATGTAAGTTGTGTATTATG
1 TAAGTTATGTAAGTTATGTATTAAG
7508876 TAAGTTATGTAAGTTAT
1 TAAGTTATGTAAGTTAT
7508893 CAAAGAAATG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.33, C:0.01, G:0.21, T:0.45
Consensus pattern (25 bp):
TAAGTTATGTAAGTTATGTATTAAG
Found at i:7508931 original size:19 final size:19
Alignment explanation
Indices: 7508907--7508945 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7508897 GAAATGTATG
7508907 TTATGTAAGT-TGTAAGTTA
1 TTATGT-AGTATGTAAGTTA
*
7508926 TTATGTATTATGTAAGTTA
1 TTATGTAGTATGTAAGTTA
7508945 T
1 T
7508946 GTAAGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (19 bp):
TTATGTAGTATGTAAGTTA
Found at i:7508966 original size:80 final size:80
Alignment explanation
Indices: 7508880--7509033 Score: 186
Period size: 80 Copynumber: 1.9 Consensus size: 80
7508870 ATTATGTAAG
* *
7508880 TTATGTAAGTTATCAAAGAAATGTATGTTATGTAAG-T-TGTAAGTTATTATGTATTATGTAAGT
1 TTATGTAAGTTATCAAAGAAATGTAAGATATGTAAGTTATGTAAGTT-TT-TGTATTATGTAAGT
7508943 TATGTAAGTTAAATGTA
64 TATGTAAGTTAAATGTA
* ** *** *
7508960 TTATGTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATGTAAGTTTTTGTATTATGTAAGTTA
1 TTATGTAAGTTATCAAAGAAATGTAAGATATGTAAGTTATGTAAGTTTTTGTATTATGTAAGTTA
*
7509025 TGTCAGTTA
66 TGTAAGTTA
7509034 TGTATGCTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 51 0.82
81 3 0.05
82 8 0.13
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.46
Consensus pattern (80 bp):
TTATGTAAGTTATCAAAGAAATGTAAGATATGTAAGTTATGTAAGTTTTTGTATTATGTAAGTTA
TGTAAGTTAAATGTA
Found at i:7508975 original size:71 final size:67
Alignment explanation
Indices: 7508850--7509069 Score: 169
Period size: 71 Copynumber: 3.2 Consensus size: 67
7508840 TATGTATTAA
* * * ** * **
7508850 GTAAGCTATGTAAG-TTGTGTATTATGTAAGTTATGTAAGTTATCAAAGAAATGTATGTTATGTA
1 GTAAGTTAT-TAAGTTTATGTATTATGTAAGTTATGTCAGTTATGTAGGCTATGTA-GTTATGTA
7508914 AGTT
64 AGTT
* * *
7508918 GTAAGTTATTATGTATTATGTAAGTTATGTAAGTTAAATGT-A-TTATGTAGGTTATGTAAGTTG
1 GTAAGTTATTAAGT-TTATGT-A-TTATGTAAGTT--ATGTCAGTTATGTAGGCTATGT-AGTTA
7508981 TGTAAGATAT
60 TGTAAG-T-T
* * *
7508991 TTAAGTTATGTAAGTTTTTGTATTATGTAAGTTATGTCAGTTATGTATGCTATGTA-TTATGTAA
1 GTAAGTTAT-TAAGTTTATGTATTATGTAAGTTATGTCAGTTATGTAGGCTATGTAGTTATGTAA
7509055 GTT
65 GTT
*
7509058 GTTATGTTATTA
1 G-TAAGTTATTA
7509070 CGTAAGTTAT
Statistics
Matches: 122, Mismatches: 17, Indels: 27
0.73 0.10 0.16
Matches are distributed among these distances:
67 6 0.05
68 16 0.13
69 17 0.14
70 3 0.02
71 54 0.44
72 4 0.03
73 18 0.15
74 4 0.03
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (67 bp):
GTAAGTTATTAAGTTTATGTATTATGTAAGTTATGTCAGTTATGTAGGCTATGTAGTTATGTAAG
TT
Found at i:7509035 original size:201 final size:201
Alignment explanation
Indices: 7508650--7509086 Score: 488
Period size: 201 Copynumber: 2.2 Consensus size: 201
7508640 TATTCGTGTA
*
7508650 TAAGCTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAG
1 TAAGCTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTATCAAAGAAATGTATGTTATGTAAG
7508715 TTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTG
66 TTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTG
***************************** * *
7508780 TGTAAGATATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATAAGTTATGTAAGTTATGT
131 TGTAAGATATTTAAGTTATGTAAGTTTTTGTATTATGTAAGTTATATAAGTTATGTAAGCTATGT
7508845 ATTAAG
196 ATTAAG
7508851 TAAGCTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTATCAAAGAAATGTATGTTATGTAAG
1 TAAGCTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTATCAAAGAAATGTATGTTATGTAAG
7508916 TTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTG
66 TTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTG
* * *
7508981 TGTAAGATATTTAAGTTATGTAAGTTTTTGTATTATGTAAGTTATGTCAGTTATGTATGCTATGT
131 TGTAAGATATTTAAGTTATGTAAGTTTTTGTATTATGTAAGTTATATAAGTTATGTAAGCTATGT
*
7509046 ATTATG
196 ATTAAG
* * *
7509052 TAAG-T-TGTTA--TGT-TATTACGTAAGTTATGCAAGTT
1 TAAGCTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTT
7509087 TATATATAAG
Statistics
Matches: 197, Mismatches: 39, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
196 20 0.10
197 3 0.02
199 4 0.02
200 1 0.01
201 169 0.86
ACGTcount: A:0.30, C:0.02, G:0.19, T:0.42
Consensus pattern (201 bp):
TAAGCTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTATCAAAGAAATGTATGTTATGTAAG
TTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTG
TGTAAGATATTTAAGTTATGTAAGTTTTTGTATTATGTAAGTTATATAAGTTATGTAAGCTATGT
ATTAAG
Found at i:7509086 original size:80 final size:79
Alignment explanation
Indices: 7508920--7509087 Score: 200
Period size: 80 Copynumber: 2.1 Consensus size: 79
7508910 TGTAAGTTGT
7508920 AAGTTATTATGTATTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTA
1 AAGTT-TTATGTATTATGTAAGTTATGTAAGTT-AATGTATTATGTA-GTTATGTAAGTTGTGTA
*
7508985 AGATATTTAAGTTATGT
63 AGATATTTAAGTTATGC
* *
7509002 AAGTTTT-TGTATTATGTAAGTTATGTCAGTT-ATGTATGCTATGTA-TTATGTAAGTTGT-TAT
1 AAGTTTTATGTATTATGTAAGTTATGTAAGTTAATGTAT--TATGTAGTTATGTAAGTTGTGTAA
*
7509063 GTTATTACGTAAGTTATGC
64 GATATT---TAAGTTATGC
7509082 AAGTTT
1 AAGTTT
7509088 ATATATAAGC
Statistics
Matches: 77, Mismatches: 4, Indels: 12
0.83 0.04 0.13
Matches are distributed among these distances:
77 7 0.09
78 19 0.25
80 44 0.57
81 2 0.03
82 5 0.06
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (79 bp):
AAGTTTTATGTATTATGTAAGTTATGTAAGTTAATGTATTATGTAGTTATGTAAGTTGTGTAAGA
TATTTAAGTTATGC
Found at i:7509260 original size:33 final size:31
Alignment explanation
Indices: 7509184--7509269 Score: 104
Period size: 33 Copynumber: 2.7 Consensus size: 31
7509174 TAAGTTATGT
*
7509184 AAGTAATGTAAGTAATGTAATAAATTTAACC
1 AAGTTATGTAAGTAATGTAATAAATTTAACC
*
7509215 AAATTATGTAAGTAATGT-ATAAAAGTTTTATA-C
1 AAGTTATGTAAGTAATGTAAT-AAA--TTTA-ACC
7509248 AAGTTATGTAAGTAATGTAATA
1 AAGTTATGTAAGTAATGTAATA
7509270 TATACTTAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
30 2 0.04
31 19 0.40
33 23 0.49
34 3 0.06
ACGTcount: A:0.47, C:0.03, G:0.14, T:0.36
Consensus pattern (31 bp):
AAGTTATGTAAGTAATGTAATAAATTTAACC
Found at i:7509304 original size:13 final size:13
Alignment explanation
Indices: 7509286--7509384 Score: 92
Period size: 13 Copynumber: 7.5 Consensus size: 13
7509276 TAAATTTTAG
*
7509286 TAAGTAATGTATT
1 TAAGTAATATATT
*
7509299 TAAGTAACATATT
1 TAAGTAATATATT
*
7509312 TAAGTAATAAATT
1 TAAGTAATATATT
** *
7509325 TAACCAA-ATTTT
1 TAAGTAATATATT
*
7509337 AGTAAGTAATGTATT
1 --TAAGTAATATATT
*
7509352 TAAGTAATTTATT
1 TAAGTAATATATT
7509365 TAAGTAATATATT
1 TAAGTAATATATT
*
7509378 AAAGTAA
1 TAAGTAA
7509385 ATTTTAGTAA
Statistics
Matches: 68, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
12 3 0.04
13 57 0.84
14 5 0.07
15 3 0.04
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.41
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:7509411 original size:53 final size:53
Alignment explanation
Indices: 7509276--7509394 Score: 184
Period size: 53 Copynumber: 2.2 Consensus size: 53
7509266 AATATATACT
*
7509276 TAAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAC
1 TAAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTAAAC
* ** * *
7509329 CAAATTTTAGTAAGTAATGTATTTAAGTAATTTATTTAAGTAATATATTAAAG
1 TAAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTAAAC
7509382 TAAATTTTAGTAA
1 TAAATTTTAGTAA
7509395 AAAATGTGTT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 59 1.00
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.43
Consensus pattern (53 bp):
TAAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTAAAC
Found at i:7509422 original size:53 final size:52
Alignment explanation
Indices: 7509276--7509422 Score: 168
Period size: 53 Copynumber: 2.8 Consensus size: 52
7509266 AATATATACT
* *
7509276 TAAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAC
1 TAAATTTTAGTAAGTAATGTATTTAAGTAATA-ATTTAAGTAATAAATTAAAC
* * * *
7509329 CAAATTTTAGTAAGTAATGTATTTAAGTAATTTATTTAAGTAATATATTAAAG
1 TAAATTTTAGTAAGTAATGTATTTAAGTAA-TAATTTAAGTAATAAATTAAAC
** * * *
7509382 TAAATTTTAGTAAAAAATGTGTTTTAGTAAGTAATGTAAGT
1 TAAATTTTAGTAAGTAATGTATTTAAGTAA-TAATTTAAGT
7509423 CATGTAAAAT
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 79 1.00
ACGTcount: A:0.44, C:0.02, G:0.12, T:0.42
Consensus pattern (52 bp):
TAAATTTTAGTAAGTAATGTATTTAAGTAATAATTTAAGTAATAAATTAAAC
Found at i:7511194 original size:147 final size:147
Alignment explanation
Indices: 7511009--7511401 Score: 395
Period size: 147 Copynumber: 2.7 Consensus size: 147
7510999 CTCAAATCTT
* * * *
7511009 TGGCGTTTTCGAATAAACGCCACAAAT-A-ATATAGCAAAACGGCATCGTATCAATAAATGTTAA
1 TGGCGTTTCCGAAAAAACGCCACTAATAACATATA-CAAAACGGCAACGTATCAATAAATGTTAA
* *
7511072 AACATTTTTGCGGCGTTTTAAGCAAAGCGCCACTAACTATAAG-TCAAAACGCA-GTCGCTTCAT
65 AACATTTTTGCGGCGTTTTAAGAAAAGCGCCACTAACTATAAGTTC-AAACG-ATGTCGCTTCAG
7511135 CAACACTT-ACGTCAAGCCCG
128 CAACACTTAAC-TCAAGCCCG
* * * * * *
7511155 TGGCATTTCCGAAAAAACGCCACTAATAACATTTACAAAACGGCAGCGTTTCTATAAATGTTAGA
1 TGGCGTTTCCGAAAAAACGCCACTAATAACATATACAAAACGGCAACGTATCAATAAATGTTAAA
* * * * * *
7511220 ACAATTTTGTGGCGTTTTAAGTAAAGCGCCACCAACTATAAGTTCAAACGATGTCGTTTCCGCAA
66 ACATTTTTGCGGCGTTTTAAGAAAAGCGCCACTAACTATAAGTTCAAACGATGTCGCTTCAGCAA
* **
7511285 CAGTTAACTCAAGCTTG
131 CACTTAACTCAAGCCCG
* * * * ** * **
7511302 TGGCGTTTCC-AGAAAAACGCTACTAATACCATAAACAAAACGACAAAATCTCAATAAA-CATAA
1 TGGCGTTTCCGA-AAAAACGCCACTAATAACATATACAAAACGGCAACGTATCAATAAATGTTAA
* *
7511365 TTACATTTTTGCGGCGTTTTATGAAAAGCGCCACTAA
65 -AACATTTTTGCGGCGTTTTAAGAAAAGCGCCACTAA
7511402 TAGCAACGTA
Statistics
Matches: 201, Mismatches: 39, Indels: 13
0.79 0.15 0.05
Matches are distributed among these distances:
146 27 0.13
147 166 0.83
148 8 0.04
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (147 bp):
TGGCGTTTCCGAAAAAACGCCACTAATAACATATACAAAACGGCAACGTATCAATAAATGTTAAA
ACATTTTTGCGGCGTTTTAAGAAAAGCGCCACTAACTATAAGTTCAAACGATGTCGCTTCAGCAA
CACTTAACTCAAGCCCG
Found at i:7512261 original size:19 final size:20
Alignment explanation
Indices: 7512237--7512278 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
7512227 ACAACAACCA
7512237 AACCCCAAAATCC-AACCCC
1 AACCCCAAAATCCAAACCCC
*
7512256 AACCCCTAAATCCTAAACCCC
1 AACCCCAAAATCC-AAACCCC
7512277 AA
1 AA
7512279 ATCACAAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 12 0.60
21 8 0.40
ACGTcount: A:0.43, C:0.48, G:0.00, T:0.10
Consensus pattern (20 bp):
AACCCCAAAATCCAAACCCC
Found at i:7513303 original size:225 final size:224
Alignment explanation
Indices: 7512969--7513542 Score: 762
Period size: 225 Copynumber: 2.5 Consensus size: 224
7512959 TGGGCTTAGG
* ** *
7512969 TTTTTTTGCGGCGCTTTAACAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGCATTCTTAAAA
1 TTTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGC-TTCTTAAAA
* * * * *
7513034 TGCCGCTAAAGCCCACGAATTG-TCAGAAAACGGTGCCGTTGGGCTTA-GT-TTTTGTTGCGACG
65 CGCCGCTAAATCCC-CGAA-AGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTGTT-CGACG
* ** *
7513096 CTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATC
127 CTTTCCCAAAAACACCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACACCACTAAATC
* * *
7513161 CTCGAAAGCTCAAAAAATGGTGA-CGTTGGGCTT
192 CCCGAAAGCTCAAAAAACGG-CATCGTTGGGCTT
*
7513194 TTTTTTTGTGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAATA
1 TTTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTT-CTTAA-A
* * *
7513259 ACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCATTGGGCTTAGGTATTTT-TTCGGCGCT
64 ACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTGTTCGACGCT
* *
7513323 TTCCCAAAAACACCGCTAAAGCCTTGAGCATTAGCGGCGTTTACTTAAAAACACCACTAAATCCC
129 TTCCCAAAAACACCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACACCACTAAATCCC
* *
7513388 CGAAAGCTCAGAAAACGGCATTGTTGGGCTT
194 CGAAAGCTCAAAAAACGGCATCGTTGGGCTT
* * *
7513419 TGGTTTTTTGTGGCGCTTTCTCGAAAACGCCGCGAAAGCCCTGAGCATTAGCGGCTCTGTCTTAA
1 T--TTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCT-TCTT-A
*
7513484 AAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTGT
62 AAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTGT
7513543 GGCGCTTTAT
Statistics
Matches: 307, Mismatches: 31, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
224 4 0.01
225 171 0.56
226 17 0.06
227 111 0.36
228 4 0.01
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (224 bp):
TTTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTTAAAAC
GCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTGTTCGACGCTTT
CCCAAAAACACCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACACCACTAAATCCCCG
AAAGCTCAAAAAACGGCATCGTTGGGCTT
Found at i:7513558 original size:113 final size:113
Alignment explanation
Indices: 7512903--7513550 Score: 752
Period size: 114 Copynumber: 5.7 Consensus size: 113
7512893 AAAGGTTTTT
** * * ** * * * *
7512903 GCGGCGCTTTTTTAAAAACGCCGCTAAAGCCCTAAAAGTTTAGAAAACGACGCCGTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
* ** *
7512968 GTTTTTTTGCGGCGCTTTAACAAAAACGCCGCTAAAGCCCTAAGCATTA
66 G-TTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * * * * *
7513017 GCGGCGCATT-CTT-AAAATGCCGCTAAAGCCCACGAATTG-TCAGAAAACGGTGCCGTTGGGCT
1 GCGGCGC-TTACTTAAAAACGCCACTAAATCCC-CGAA-AGCTCAGAAAACGGCGTCGTTGGGCT
* * * *
7513079 TAGTTTTTGTTGCGACGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTA
63 TAGGTTTT-TTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * * * *
7513131 GCGGCGCTTACTTAAAAACGCCACTAAATCCTCGAAAGCTCAAAAAATGGTGACGTTGGGCTT--
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
* *
7513194 TTTTTTTGTGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTA
66 GTTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* *
7513242 GCGGCGCTTACTTAATAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCATTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
* * *
7513307 GTATTTTT-TCGGCGCTTTCCCAAAAACACCGCTAAAGCCTTGAGCATTA
66 GT-TTTTTGT-GGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * * * *
7513356 GCGGCGTTTACTTAAAAACACCACTAAATCCCCGAAAGCTCAGAAAACGGCATTGTTGGGCTTTG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
* *
7513421 GTTTTTTGTGGCGCTTTCTCGAAAACGCCGCGAAAGCCCTGAGCATTA
66 GTTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * *
7513469 GCGGCTCTGT-CTTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTA
1 GCGGCGCT-TACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTA
*
7513533 GGTATTTTGTGGCGCTTT
65 GGTTTTTTGTGGCGCTTT
7513551 ATGGAAAATG
Statistics
Matches: 464, Mismatches: 57, Indels: 27
0.85 0.10 0.05
Matches are distributed among these distances:
111 97 0.21
112 5 0.01
113 136 0.29
114 209 0.45
115 17 0.04
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (113 bp):
GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
GTTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:7513923 original size:40 final size:40
Alignment explanation
Indices: 7513830--7513937 Score: 146
Period size: 40 Copynumber: 2.7 Consensus size: 40
7513820 TTTGGATAAA
*
7513830 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTGG
1 AAAACGCCGCTAAAGATCGAGCATTAGCGGCACTTTTTGG
* * *
7513870 AAAATGCCACTAAAGATCGAGTATTAGCGGCACTTTTTGG
1 AAAACGCCGCTAAAGATCGAGCATTAGCGGCACTTTTTGG
* * *
7513910 AAAACGCTGCTAAAAAT-AAGCATTAGCG
1 AAAACGCCGCTAAAGATCGAGCATTAGCG
7513938 ACGTTTTCCA
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
39 9 0.16
40 49 0.84
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (40 bp):
AAAACGCCGCTAAAGATCGAGCATTAGCGGCACTTTTTGG
Found at i:7514147 original size:41 final size:41
Alignment explanation
Indices: 7513999--7514160 Score: 252
Period size: 41 Copynumber: 4.0 Consensus size: 41
7513989 GAGCTTTCGA
* *
7513999 GGCTTTAGCGGCGTTTTTGAGAAAGGGCAGCTAATGCTCAG
1 GGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAG
*
7514040 GGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTAAG
1 GGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAG
* *
7514081 GGCTTTAGCGGCGTTTTTTAGAAAGCGTCGCTAATGCTCAG
1 GGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAG
* * *
7514122 GGCTTTAGCGGCGTTTTTGATAAAGCACCGCGAATGCTC
1 GGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTC
7514161 TATTTTTAGC
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 110 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (41 bp):
GGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAG
Found at i:7514370 original size:14 final size:14
Alignment explanation
Indices: 7514351--7514452 Score: 64
Period size: 14 Copynumber: 7.1 Consensus size: 14
7514341 CGTTCGAGTA
*
7514351 TAGGGTTTTTGGTT
1 TAGGGTTTATGGTT
*
7514365 TAGGGTATATGGTT
1 TAGGGTTTATGGTT
* *
7514379 TAGAGTTTAAGGTT
1 TAGGGTTTATGGTT
*
7514393 TAGGTGTTACCAT--TT
1 TAGG-GTT--TATGGTT
* *
7514408 TAAGGTTTATGGAT
1 TAGGGTTTATGGTT
* *
7514422 TATGGGTTTAGGGGT
1 TA-GGGTTTATGGTT
*
7514437 TATGGTTTATGGTT
1 TAGGGTTTATGGTT
7514451 TA
1 TA
7514453 AATGTTGGGG
Statistics
Matches: 65, Mismatches: 17, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
12 2 0.03
14 43 0.66
15 19 0.29
17 1 0.02
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.47
Consensus pattern (14 bp):
TAGGGTTTATGGTT
Found at i:7514431 original size:22 final size:21
Alignment explanation
Indices: 7514406--7514453 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
7514396 GTGTTACCAT
*
7514406 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGGTTATGGATTAT-GG
* *
7514428 TTTAGGGGTTATGGTTTATGG
1 TTTAAGGGTTATGGATTATGG
7514449 TTTAA
1 TTTAA
7514454 ATGTTGGGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (21 bp):
TTTAAGGGTTATGGATTATGG
Found at i:7514769 original size:14 final size:15
Alignment explanation
Indices: 7514743--7514780 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
7514733 AGTAATTATA
7514743 TATGGATTTAGGGAT
1 TATGGATTTAGGGAT
7514758 TATGGA-TTAGGGAT
1 TATGGATTTAGGGAT
7514772 TATGG-TTTA
1 TATGGATTTA
7514781 AGGGTTGGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (15 bp):
TATGGATTTAGGGAT
Found at i:7514801 original size:21 final size:22
Alignment explanation
Indices: 7514746--7514862 Score: 98
Period size: 21 Copynumber: 5.5 Consensus size: 22
7514736 AATTATATAT
* * * *
7514746 GGATTTAGGGATTATGGATTAG
1 GGATTTAAGGTTTAAGGGTTAG
*
7514768 GGA-TTATGGTTTAAGGGTT-G
1 GGATTTAAGGTTTAAGGGTTAG
7514788 GGATTTAAGGTTTAAGGGTTA-
1 GGATTTAAGGTTTAAGGGTTAG
* * * *
7514809 AGAGTTAAGGGTTAAGAGTTAG
1 GGATTTAAGGTTTAAGGGTTAG
* *
7514831 GGATTTAGGGTTT-AGGATTTAG
1 GGATTTAAGGTTTAAGG-GTTAG
7514853 GGATTTAAGG
1 GGATTTAAGG
7514863 GTCAGGTTAG
Statistics
Matches: 75, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
20 4 0.05
21 46 0.61
22 25 0.33
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.36
Consensus pattern (22 bp):
GGATTTAAGGTTTAAGGGTTAG
Found at i:7514840 original size:8 final size:8
Alignment explanation
Indices: 7514827--7514859 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
7514817 GGGTTAAGAG
7514827 TTAGGGAT
1 TTAGGGAT
7514835 TTAGGG-T
1 TTAGGGAT
7514842 TTA-GGAT
1 TTAGGGAT
7514849 TTAGGGAT
1 TTAGGGAT
7514857 TTA
1 TTA
7514860 AGGGTCAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 2 0.09
7 8 0.35
8 13 0.57
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.42
Consensus pattern (8 bp):
TTAGGGAT
Found at i:7514844 original size:7 final size:7
Alignment explanation
Indices: 7514749--7514886 Score: 63
Period size: 7 Copynumber: 19.7 Consensus size: 7
7514739 TATATATGGA
7514749 TTTAGGG
1 TTTAGGG
* *
7514756 ATTATGG
1 TTTAGGG
*
7514763 ATTAGGG
1 TTTAGGG
* *
7514770 ATTATGG
1 TTTAGGG
7514777 TTTAAGGG
1 TTT-AGGG
7514785 -TT-GGG
1 TTTAGGG
*
7514790 ATTTAAGG
1 -TTTAGGG
7514798 TTTAAGGG
1 TTT-AGGG
* *
7514806 TTAAGAG
1 TTTAGGG
*
7514813 TTAAGGG
1 TTTAGGG
* *
7514820 TTAAGAG
1 TTTAGGG
7514827 -TTAGGG
1 TTTAGGG
7514833 ATTTAGGG
1 -TTTAGGG
*
7514841 TTTAGGA
1 TTTAGGG
7514848 TTTAGGG
1 TTTAGGG
7514855 ATTTAAGGG
1 -TTT-AGGG
*
7514864 -TCA-GG
1 TTTAGGG
7514869 -TTAGGG
1 TTTAGGG
7514875 TTTAGGG
1 TTTAGGG
7514882 TTTAG
1 TTTAG
7514887 ATTAATTAGT
Statistics
Matches: 102, Mismatches: 18, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
5 7 0.07
6 7 0.07
7 65 0.64
8 19 0.19
9 4 0.04
ACGTcount: A:0.25, C:0.01, G:0.37, T:0.37
Consensus pattern (7 bp):
TTTAGGG
Found at i:7518943 original size:43 final size:43
Alignment explanation
Indices: 7518876--7518962 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
7518866 CAATGATGTA
* *
7518876 CAAGATTTCCTTGATTAAATAAATGTATTATATCTTTTATTAC
1 CAAGATTTACTTGATTAAATAAATGCATTATATCTTTTATTAC
* *
7518919 CAAGATTTACTTGATTAAGA-AAATGCATTGTATGTTTTATTAC
1 CAAGATTTACTTGATTAA-ATAAATGCATTATATCTTTTATTAC
7518962 C
1 C
7518963 TTGCATATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 38 0.97
44 1 0.03
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.44
Consensus pattern (43 bp):
CAAGATTTACTTGATTAAATAAATGCATTATATCTTTTATTAC
Found at i:7519287 original size:43 final size:43
Alignment explanation
Indices: 7519239--7519583 Score: 494
Period size: 43 Copynumber: 8.0 Consensus size: 43
7519229 TTTTAACGGT
* * *
7519239 GTTTGTGGGAAAAGCGCCGTTAAAAGTGATGATCTATAGCAGC
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
* *
7519282 GTTTGTGGTAAAAGCGTCGCTAAAAGTCATGATCTATAGCGGC
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
*
7519325 GTTTGTGGGAAAAGCGCCGCAAAAAGTCATGA-CTTATAGCGGC
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATC-TATAGCGGC
*
7519368 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTTTAGCGGC
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
*
7519411 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTTTAGCGGC
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
* *
7519454 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTTTAGTGGC
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
* * * * *
7519497 GTTTGTGGGAAAAGCGCTGCTAAAGGTCTTGTTCTATAGCGGT
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
* * * * *
7519540 GTTTGTGTGAAAAGCACCGCTAAAGGTCTTGTTCTATAGCGGC
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
7519583 G
1 G
7519584 GTGTCAATAG
Statistics
Matches: 278, Mismatches: 22, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
42 1 0.00
43 276 0.99
44 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (43 bp):
GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
Found at i:7522613 original size:31 final size:32
Alignment explanation
Indices: 7522575--7522637 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
7522565 AGGCAAATTA
7522575 CAAGAGTAATTGAATCCTAAT-AAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
7522606 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
7522638 AAANNNNNNN
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 21 0.68
32 10 0.32
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.32
Consensus pattern (32 bp):
CAAGAGTAATTGAATCCTAATAAAAACTCTTT
Found at i:7529785 original size:31 final size:32
Alignment explanation
Indices: 7529726--7529790 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
7529716 GGCAAATTAC
7529726 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
7529758 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
7529789 AA
1 AA
7529791 ATTATCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:7531241 original size:34 final size:34
Alignment explanation
Indices: 7531193--7531259 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
7531183 AAATTCCTGT
7531193 GAAAAAAGTGAGCAAAGAATATGGTTTTAGTAAG
1 GAAAAAAGTGAGCAAAGAATATGGTTTTAGTAAG
7531227 GAAAAAAGCT-AGCAAAGAATATGGTTTTAGTAA
1 GAAAAAAG-TGAGCAAAGAATATGGTTTTAGTAA
7531260 ACGCCCATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 31 0.97
35 1 0.03
ACGTcount: A:0.48, C:0.04, G:0.24, T:0.24
Consensus pattern (34 bp):
GAAAAAAGTGAGCAAAGAATATGGTTTTAGTAAG
Found at i:7533778 original size:202 final size:202
Alignment explanation
Indices: 7533431--7533803 Score: 620
Period size: 202 Copynumber: 1.8 Consensus size: 202
7533421 ATGTTATCAA
*
7533431 ATTTGTTGCTCAATTTGCTAATGCTAGCTCATCAAATAATACATTGCAATAATAATATGAGTTAC
1 ATTTGTTGCTCAATTTGCTAATGCTAGCTCATCAAACAATACATTGCAATAATAATATGAGTTAC
**
7533496 AAATCAAATATCATCTCTACATCATCCAAACCATTACTCTACAGAGAGGACATTTCATTCCTAAC
66 AAATCAAATATCATCTCTACATCATCCAAACCATTAAACTACAGAGAGGACATTTCATTCCTAAC
* * * *
7533561 CTATGAAGAACGGACACGCCAGAAATCCCCTTGTACTGGTGCCAACACGTTGTCCGACAATGGAG
131 CAATGAAGAACGGACAAGCCAGAAATCCCCTCGTACAGGTGCCAACACGTTGTCCGACAATGGAG
7533626 ATGTCAG
196 ATGTCAG
*
7533633 ATTTGTTGTTCAATTTGCTAATGCTAGCTCATCAAACAATACATTGCAATAATAATATGAGTTAC
1 ATTTGTTGCTCAATTTGCTAATGCTAGCTCATCAAACAATACATTGCAATAATAATATGAGTTAC
* * *
7533698 AAATCAAATATCATCTCTACATCATCCAAACCATTAAACTATAGAGTGGACATTTCATTCCTAGC
66 AAATCAAATATCATCTCTACATCATCCAAACCATTAAACTACAGAGAGGACATTTCATTCCTAAC
* **
7533763 CAATGAAGCACGGACAAGCTGGAAATCCCCTCGTACAGGTG
131 CAATGAAGAACGGACAAGCCAGAAATCCCCTCGTACAGGTG
7533804 TCGACATGGT
Statistics
Matches: 157, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
202 157 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (202 bp):
ATTTGTTGCTCAATTTGCTAATGCTAGCTCATCAAACAATACATTGCAATAATAATATGAGTTAC
AAATCAAATATCATCTCTACATCATCCAAACCATTAAACTACAGAGAGGACATTTCATTCCTAAC
CAATGAAGAACGGACAAGCCAGAAATCCCCTCGTACAGGTGCCAACACGTTGTCCGACAATGGAG
ATGTCAG
Found at i:7536482 original size:2 final size:2
Alignment explanation
Indices: 7536475--7536509 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7536465 CATATACATA
*
7536475 TG TG TG TG TG TG TG TG TG TG TG TG TG CG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
7536510 ACATATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.03, G:0.49, T:0.49
Consensus pattern (2 bp):
TG
Found at i:7537143 original size:22 final size:23
Alignment explanation
Indices: 7537118--7537169 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
7537108 GGCAGCGGAT
* *
7537118 AAAACGAAA-ATAAAAACAAAGC
1 AAAACGAAACAAAAAAAAAAAGC
*
7537140 AAAAC-AAACAAAAAAAAAAAGT
1 AAAACGAAACAAAAAAAAAAAGC
7537162 AAAA-GAAA
1 AAAACGAAA
7537170 GGCAACCGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 3 0.12
22 22 0.88
ACGTcount: A:0.79, C:0.10, G:0.08, T:0.04
Consensus pattern (23 bp):
AAAACGAAACAAAAAAAAAAAGC
Found at i:7540576 original size:102 final size:103
Alignment explanation
Indices: 7540401--7540641 Score: 358
Period size: 102 Copynumber: 2.3 Consensus size: 103
7540391 CCAGTGATTC
* *
7540401 GGGGAATCAACACTTAGCAACCCCTTTCACATTCAAAGATATGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
* *
7540466 ACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
66 ACCAATGAATCGAGGAATCAACACTTAGCAACCCCTTG
* * *
7540504 GGGGAATCATCACTTAGCAACCCCCTTCACATTTAAA-ATACGGTGGGATCAGCACTTAGCAACC
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
* * *
7540568 ACCAATGAATTGAGGAATCAACACTTAGTAGCCCCTTG
66 ACCAATGAATCGAGGAATCAACACTTAGCAACCCCTTG
* * *
7540606 GGGGAATCAGCACTTAGCAACCCCCTTTATATTCAA
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTCAA
7540642 TGTACTCCGG
Statistics
Matches: 124, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
102 90 0.73
103 34 0.27
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (103 bp):
GGGGAATCAACACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
ACCAATGAATCGAGGAATCAACACTTAGCAACCCCTTG
Found at i:7552578 original size:33 final size:33
Alignment explanation
Indices: 7552541--7552690 Score: 107
Period size: 33 Copynumber: 4.4 Consensus size: 33
7552531 CGGTGGATTT
*
7552541 AGCACTTAGCAACCACCAGTGATTCGGGGAATC
1 AGCACTTAGCAACCACCAATGATTCGGGGAATC
*
7552574 AGCACTTAGCAACCCCTTTCACATTCAAAGATAT-GGTGGAATC
1 AGCACTTAGCAA---C---CAC---CAATGAT-TCGG-GGAATC
*
7552617 AGCACTTAGCAACCACCAATGAATCGGGGAATC
1 AGCACTTAGCAACCACCAATGATTCGGGGAATC
* *
7552650 AACACTTAGCAACC-CC-----TTGGGGGAATC
1 AGCACTTAGCAACCACCAATGATTCGGGGAATC
7552677 AGCACTTAGCAACC
1 AGCACTTAGCAACC
7552691 CCCTTNNNNN
Statistics
Matches: 97, Mismatches: 8, Indels: 30
0.72 0.06 0.22
Matches are distributed among these distances:
27 22 0.23
32 2 0.02
33 32 0.33
34 7 0.07
36 1 0.01
37 3 0.03
39 3 0.03
40 1 0.01
42 7 0.07
43 19 0.20
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (33 bp):
AGCACTTAGCAACCACCAATGATTCGGGGAATC
Found at i:7556919 original size:50 final size:50
Alignment explanation
Indices: 7556857--7556988 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 50
7556847 AATGTCATAT
* **
7556857 CCCAGATATGGTCTTACATAGGAGTTCTCATATCGGTGGCC-ATGCCATGC
1 CCCAGACATGGTCTTACATAGGACCTCTCATATCGGT-GCCAATGCCATGC
*** * *
7556907 CCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAATGCCATGT
1 CCCAGACATGGTCTTACATAGGACCTCTCATATCGGTGCCAATGCCATGC
* *
7556957 CCCAGACATGGTCTTACATGGGACCTTTCATA
1 CCCAGACATGGTCTTACATAGGACCTCTCATA
7556989 ATCTCAATGA
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
49 3 0.04
50 66 0.96
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
CCCAGACATGGTCTTACATAGGACCTCTCATATCGGTGCCAATGCCATGC
Found at i:7559127 original size:755 final size:755
Alignment explanation
Indices: 7557677--7559187 Score: 3022
Period size: 755 Copynumber: 2.0 Consensus size: 755
7557667 AAAATCATTT
7557677 CGTGAAATTGTAGGCCATAAAAATATAGTAAAAATAAATTTTTTATCATTGGATTTGTGGTCCCG
1 CGTGAAATTGTAGGCCATAAAAATATAGTAAAAATAAATTTTTTATCATTGGATTTGTGGTCCCG
7557742 AAACCACTGTTCCGACTAGGCCCAAAATCGGGATGTTACACATAGAGCATCATCGAGCCTTCAGG
66 AAACCACTGTTCCGACTAGGCCCAAAATCGGGATGTTACACATAGAGCATCATCGAGCCTTCAGG
7557807 TCGAATCTTTTCTATTAGTTGTACCACATTCTCAAGGATTCCTTTGATCTCACAGTTTACTCGTT
131 TCGAATCTTTTCTATTAGTTGTACCACATTCTCAAGGATTCCTTTGATCTCACAGTTTACTCGTT
7557872 CAACTTGCCAATTTGACTGTGGATGATAGGTAGTGTCAATTTTGTGTTTCACATTGTACTTGTTA
196 CAACTTGCCAATTTGACTGTGGATGATAGGTAGTGTCAATTTTGTGTTTCACATTGTACTTGTTA
7557937 GGCAACCACTTAAGCCATTTATTTACAACGTGAGATCCTTCATCGCTAATTATAGCTCTCAGAGT
261 GGCAACCACTTAAGCCATTTATTTACAACGTGAGATCCTTCATCGCTAATTATAGCTCTCAGAGT
7558002 CCGAAACTTTGTAAGCACATGCTTATGTAGGAATCACATAACTACTTTAGCATCATTTGTGGTAT
326 CCGAAACTTTGTAAGCACATGCTTATGTAGGAATCACATAACTACTTTAGCATCATTTGTGGTAT
7558067 ACGCCTCGGCTTCAACCCACTTGGATACATAACCCACCGCCACTAGGATGTACCTATTACCATAA
391 ACGCCTCGGCTTCAACCCACTTGGATACATAACCCACCGCCACTAGGATGTACCTATTACCATAA
7558132 GAAGAAGGAAACGATCCTAAAAAATGAATGCCCCAAATATCAAATAATTTTACCACTAAGATGTT
456 GAAGAAGGAAACGATCCTAAAAAATGAATGCCCCAAATATCAAATAATTTTACCACTAAGATGTT
7558197 TGTCAAGGGTATCTCGTTCCTTCTTGATATGTTTTTAGTCCTTTGGCATCAATGGCAATTTTTCA
521 TGTCAAGGGTATCTCGTTCCTTCTTGATATGTTTTTAGTCCTTTGGCATCAATGGCAATTTTTCA
7558262 CATATGCGTATGCATCTTTAAACATCATAGGCCAACAAAATCTAGCTTGTAAGATCTTTACTACA
586 CATATGCGTATGCATCTTTAAACATCATAGGCCAACAAAATCTAGCTTGTAAGATCTTTACTACA
7558327 GGACGGGAACCACAAAAATGTCCCCCAACTGGAGATGAATAAAGATGGTATAGGATCTCGTTAAT
651 GGACGGGAACCACAAAAATGTCCCCCAACTGGAGATGAATAAAGATGGTATAGGATCTCGTTAAT
7558392 CTCACTTCCAGCTATGCACTTCCTGATTATATTATCTAGA
716 CTCACTTCCAGCTATGCACTTCCTGATTATATTATCTAGA
7558432 CGTGAAATTGTAGGCCATAAAAATATAGTAAAAATAAATTTTTTATCATTGGATTTGTGGTCCCG
1 CGTGAAATTGTAGGCCATAAAAATATAGTAAAAATAAATTTTTTATCATTGGATTTGTGGTCCCG
7558497 AAACCACTGTTCCGACTAGGCCCAAAATCGGGATGTTACACATAGAGCATCATCGAGCCTTCAGG
66 AAACCACTGTTCCGACTAGGCCCAAAATCGGGATGTTACACATAGAGCATCATCGAGCCTTCAGG
7558562 TCGAATCTTTTCTATTAGTTGTACCACATTCTCAAGGATTCCTTTGATCTCACAGTTTACTCGTT
131 TCGAATCTTTTCTATTAGTTGTACCACATTCTCAAGGATTCCTTTGATCTCACAGTTTACTCGTT
7558627 CAACTTGCCAATTTGACTGTGGATGATAGGTAGTGTCAATTTTGTGTTTCACATTGTACTTGTTA
196 CAACTTGCCAATTTGACTGTGGATGATAGGTAGTGTCAATTTTGTGTTTCACATTGTACTTGTTA
7558692 GGCAACCACTTAAGCCATTTATTTACAACGTGAGATCCTTCATCGCTAATTATAGCTCTCAGAGT
261 GGCAACCACTTAAGCCATTTATTTACAACGTGAGATCCTTCATCGCTAATTATAGCTCTCAGAGT
7558757 CCGAAACTTTGTAAGCACATGCTTATGTAGGAATCACATAACTACTTTAGCATCATTTGTGGTAT
326 CCGAAACTTTGTAAGCACATGCTTATGTAGGAATCACATAACTACTTTAGCATCATTTGTGGTAT
7558822 ACGCCTCGGCTTCAACCCACTTGGATACATAACCCACCGCCACTAGGATGTACCTATTACCATAA
391 ACGCCTCGGCTTCAACCCACTTGGATACATAACCCACCGCCACTAGGATGTACCTATTACCATAA
7558887 GAAGAAGGAAACGATCCTAAAAAATGAATGCCCCAAATATCAAATAATTTTACCACTAAGATGTT
456 GAAGAAGGAAACGATCCTAAAAAATGAATGCCCCAAATATCAAATAATTTTACCACTAAGATGTT
7558952 TGTCAAGGGTATCTCGTTCCTTCTTGATATGTTTTTAGTCCTTTGGCATCAATGGCAATTTTTCA
521 TGTCAAGGGTATCTCGTTCCTTCTTGATATGTTTTTAGTCCTTTGGCATCAATGGCAATTTTTCA
7559017 CATATGCGTATGCATCTTTAAACATCATAGGCCAACAAAATCTAGCTTGTAAGATCTTTACTACA
586 CATATGCGTATGCATCTTTAAACATCATAGGCCAACAAAATCTAGCTTGTAAGATCTTTACTACA
7559082 GGACGGGAACCACAAAAATGTCCCCCAACTGGAGATGAATAAAGATGGTATAGGATCTCGTTAAT
651 GGACGGGAACCACAAAAATGTCCCCCAACTGGAGATGAATAAAGATGGTATAGGATCTCGTTAAT
7559147 CTCACTTCCAGCTATGCACTTCCTGATTATATTATCTAGA
716 CTCACTTCCAGCTATGCACTTCCTGATTATATTATCTAGA
7559187 C
1 C
7559188 ACTGTTAAAT
Statistics
Matches: 756, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
755 756 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (755 bp):
CGTGAAATTGTAGGCCATAAAAATATAGTAAAAATAAATTTTTTATCATTGGATTTGTGGTCCCG
AAACCACTGTTCCGACTAGGCCCAAAATCGGGATGTTACACATAGAGCATCATCGAGCCTTCAGG
TCGAATCTTTTCTATTAGTTGTACCACATTCTCAAGGATTCCTTTGATCTCACAGTTTACTCGTT
CAACTTGCCAATTTGACTGTGGATGATAGGTAGTGTCAATTTTGTGTTTCACATTGTACTTGTTA
GGCAACCACTTAAGCCATTTATTTACAACGTGAGATCCTTCATCGCTAATTATAGCTCTCAGAGT
CCGAAACTTTGTAAGCACATGCTTATGTAGGAATCACATAACTACTTTAGCATCATTTGTGGTAT
ACGCCTCGGCTTCAACCCACTTGGATACATAACCCACCGCCACTAGGATGTACCTATTACCATAA
GAAGAAGGAAACGATCCTAAAAAATGAATGCCCCAAATATCAAATAATTTTACCACTAAGATGTT
TGTCAAGGGTATCTCGTTCCTTCTTGATATGTTTTTAGTCCTTTGGCATCAATGGCAATTTTTCA
CATATGCGTATGCATCTTTAAACATCATAGGCCAACAAAATCTAGCTTGTAAGATCTTTACTACA
GGACGGGAACCACAAAAATGTCCCCCAACTGGAGATGAATAAAGATGGTATAGGATCTCGTTAAT
CTCACTTCCAGCTATGCACTTCCTGATTATATTATCTAGA
Found at i:7560431 original size:39 final size:39
Alignment explanation
Indices: 7560377--7560458 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
7560367 AAGCAAAACA
*
7560377 GTAATGGAAAGAAATCAAAAGATTGAGAATCAAATCGAT
1 GTAATGGAAAGAAATCAAAAGATTGAGAATCAAATCAAT
7560416 GTAATGGAAAGAAATCAAAAGATTGAGAATCAAATCAAT
1 GTAATGGAAAGAAATCAAAAGATTGAGAATCAAATCAAT
7560455 GTAA
1 GTAA
7560459 ACAAGATTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.52, C:0.07, G:0.20, T:0.21
Consensus pattern (39 bp):
GTAATGGAAAGAAATCAAAAGATTGAGAATCAAATCAAT
Found at i:7560452 original size:20 final size:20
Alignment explanation
Indices: 7560388--7560453 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
7560378 TAATGGAAAG
7560388 AAATCAAAAGATTGAGAATC
1 AAATCAAAAGATTGAGAATC
* * * **
7560408 AAATC-GATGTAATG-GAAAG
1 AAATCAAAAG-ATTGAGAATC
7560427 AAATCAAAAGATTGAGAATC
1 AAATCAAAAGATTGAGAATC
7560447 AAATCAA
1 AAATCAA
7560454 TGTAAACAAG
Statistics
Matches: 33, Mismatches: 10, Indels: 6
0.67 0.20 0.12
Matches are distributed among these distances:
19 13 0.39
20 20 0.61
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.20
Consensus pattern (20 bp):
AAATCAAAAGATTGAGAATC
Found at i:7560647 original size:3 final size:3
Alignment explanation
Indices: 7560634--7560673 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
7560624 CTGTGTTCTT
7560634 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7560674 NNNNNNNNNN
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:7563636 original size:24 final size:24
Alignment explanation
Indices: 7563609--7563654 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
7563599 AGAACAGTCC
* *
7563609 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
7563633 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
7563655 AAAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:7566285 original size:18 final size:17
Alignment explanation
Indices: 7566262--7566295 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
7566252 AAAATAATAG
7566262 CAAAGAAAAAGGAAAAAA
1 CAAAGAAAAA-GAAAAAA
7566280 CAAAGAAAAAGAAAAA
1 CAAAGAAAAAGAAAAA
7566296 GGAGAGGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.79, C:0.06, G:0.15, T:0.00
Consensus pattern (17 bp):
CAAAGAAAAAGAAAAAA
Found at i:7568536 original size:44 final size:44
Alignment explanation
Indices: 7568488--7568603 Score: 178
Period size: 44 Copynumber: 2.6 Consensus size: 44
7568478 TAATTCTACT
* * * *
7568488 TCCCTGGGCATCAGTGGAATAGATTGAAGATTGTGAATCCTATC
1 TCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATC
*
7568532 TCCCTTGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATC
1 TCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATC
*
7568576 TCCTTGGTCAGCAGTGGAATAGGTTGAA
1 TCCCTGGTCAGCAGTGGAATAGGTTGAA
7568604 AGTAAACAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (44 bp):
TCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATC
Found at i:7568562 original size:132 final size:132
Alignment explanation
Indices: 7567629--7568519 Score: 1550
Period size: 132 Copynumber: 6.8 Consensus size: 132
7567619 CAGTGAAGCA
* * *
7567629 GATCGAAGATGGTGGATATTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTATA
1 GATCGAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
*
7567694 CTTCCCTAGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGCGGAG
66 CTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGCGGAG
*
7567759 CA
131 CT
* *
7567761 GATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
1 GATCGAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
* *
7567826 CTTTCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGCGGAG
66 CTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGCGGAG
7567891 CT
131 CT
7567893 GATCGAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
1 GATCGAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
7567958 CTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGCGGAG
66 CTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGCGGAG
7568023 CT
131 CT
*
7568025 GATCGAAGATGGTGAATTTTCCCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
1 GATCGAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
7568090 CTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGCGGAG
66 CTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGCGGAG
7568155 CT
131 CT
*
7568157 GATCGAAGATGGTGAATTTTCCCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
1 GATCGAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
7568222 CTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGCGGAG
66 CTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGCGGAG
7568287 CT
131 CT
*
7568289 GATCGAAGATGGTGAATTTTCCCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
1 GATCGAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
* * * *
7568354 CTTTCCTGGACAACAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCAGTAGCGGAG
66 CTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGCGGAG
*
7568419 CA
131 CT
* * * *
7568421 GATCGAAGATAG-CAGATTTTACCTCCCTGTGGTTACAGCGGAGTACATTGAATCCAGTAATTCT
1 GATCGAAGATGGTGA-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * *
7568485 ACTTCCCTGGGCATCAGTGGAATAGATTGAAGATT
65 ACTTCCCTAGACAACAGTGGAATAGATTGAAGATT
7568520 GTGAATCCTA
Statistics
Matches: 732, Mismatches: 26, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
131 1 0.00
132 731 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (132 bp):
GATCGAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
CTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCAGTAGCGGAG
CT
Found at i:7569218 original size:20 final size:20
Alignment explanation
Indices: 7569193--7569258 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
7569183 TAATGGAAAG
7569193 AAATCAAAGGATTGAGAATC
1 AAATCAAAGGATTGAGAATC
* * * **
7569213 AAATCAATGTAATG-GAAAG
1 AAATCAAAGGATTGAGAATC
*
7569232 AAATCAAAAGATTGAGAATC
1 AAATCAAAGGATTGAGAATC
7569252 AAATCAA
1 AAATCAA
7569259 TGTAAACAAG
Statistics
Matches: 34, Mismatches: 11, Indels: 2
0.72 0.23 0.04
Matches are distributed among these distances:
19 13 0.38
20 21 0.62
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.20
Consensus pattern (20 bp):
AAATCAAAGGATTGAGAATC
Found at i:7569236 original size:39 final size:39
Alignment explanation
Indices: 7569182--7569263 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
7569172 AAGCAAAACA
*
7569182 GTAATGGAAAGAAATCAAAGGATTGAGAATCAAATCAAT
1 GTAATGGAAAGAAATCAAAAGATTGAGAATCAAATCAAT
7569221 GTAATGGAAAGAAATCAAAAGATTGAGAATCAAATCAAT
1 GTAATGGAAAGAAATCAAAAGATTGAGAATCAAATCAAT
7569260 GTAA
1 GTAA
7569264 ACAAGATTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.52, C:0.07, G:0.20, T:0.21
Consensus pattern (39 bp):
GTAATGGAAAGAAATCAAAAGATTGAGAATCAAATCAAT
Found at i:7569237 original size:19 final size:19
Alignment explanation
Indices: 7569181--7569239 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
7569171 GAAGCAAAAC
7569181 AGTAATGGAAAGAAATCAA
1 AGTAATGGAAAGAAATCAA
* * **
7569200 AGGATTGAGAATCAAATCAA
1 AGTAATG-GAAAGAAATCAA
*
7569220 TGTAATGGAAAGAAATCAA
1 AGTAATGGAAAGAAATCAA
7569239 A
1 A
7569240 AGATTGAGAA
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.54, C:0.07, G:0.20, T:0.19
Consensus pattern (19 bp):
AGTAATGGAAAGAAATCAA
Found at i:7569458 original size:3 final size:3
Alignment explanation
Indices: 7569452--7569483 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7569442 TTTTTTTCTT
7569452 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7569484 TCTCCTTGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7588440 original size:21 final size:21
Alignment explanation
Indices: 7588414--7588510 Score: 146
Period size: 21 Copynumber: 4.7 Consensus size: 21
7588404 AATCATATCT
7588414 TCTAAGATTGTATATATCATA
1 TCTAAGATTGTATATATCATA
*
7588435 TCTAAGATTGCATATATCATA
1 TCTAAGATTGTATATATCATA
7588456 TCTAAGATT-TCATATATCATA
1 TCTAAGATTGT-ATATATCATA
*
7588477 TCTAAGATTG--CATATCATA
1 TCTAAGATTGTATATATCATA
7588496 TCTAAGATTGTATAT
1 TCTAAGATTGTATAT
7588511 CCTCGAAAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
19 18 0.26
21 50 0.74
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.41
Consensus pattern (21 bp):
TCTAAGATTGTATATATCATA
Found at i:7594541 original size:25 final size:25
Alignment explanation
Indices: 7594499--7594561 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
7594489 TTAAGTGTTT
* *
7594499 TCAGTATAGT-CTATCTATAGTAGTC
1 TCAGTATA-TACTACCTATAGCAGTC
*
7594524 TCAGTATATACTACCTATAGCAGTT
1 TCAGTATATACTACCTATAGCAGTC
*
7594549 TCAGGATATACTA
1 TCAGTATATACTA
7594562 TCAAAGACAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 1 0.03
25 32 0.97
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (25 bp):
TCAGTATATACTACCTATAGCAGTC
Found at i:7597803 original size:67 final size:67
Alignment explanation
Indices: 7597732--7597941 Score: 159
Period size: 67 Copynumber: 3.1 Consensus size: 67
7597722 TGAATGAATC
7597732 AAATTCATATATTAATTATATTCTTTTCAAAAGAATATTAATTTTCATGTATTTTATATTTCGAC
1 AAATTCATATATTAATTATATTCTTTTCAAAAGAATATTAATTTTCATGTATTTTATATTTCGAC
7597797 CG
66 CG
* * * * * *
7597799 AAATTAAT-TAATATAATTGT-TTATATTT-ATAAATTCGGTAA-AAT-ATATACAAT-TAATAT
1 AAATTCATAT-AT-TAATTATATTCT-TTTCA-AAA----G-AATATTAATTTTC-ATGT-AT-T
* * *
7597858 TT-TGTGT-GAATC-
54 TTATATTTCG-ACCG
7597870 AAATTCATATATTAATTATATTCTTTTCAAAAGAATATTAATTTTCATGTATTTTATATTTCGAC
1 AAATTCATATATTAATTATATTCTTTTCAAAAGAATATTAATTTTCATGTATTTTATATTTCGAC
7597935 CG
66 CG
7597937 AAATT
1 AAATT
7597942 AATTAATATA
Statistics
Matches: 103, Mismatches: 18, Indels: 44
0.62 0.11 0.27
Matches are distributed among these distances:
65 5 0.05
66 13 0.13
67 24 0.23
68 12 0.12
70 12 0.12
71 19 0.18
72 13 0.13
73 5 0.05
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.47
Consensus pattern (67 bp):
AAATTCATATATTAATTATATTCTTTTCAAAAGAATATTAATTTTCATGTATTTTATATTTCGAC
CG
Found at i:7597813 original size:71 final size:71
Alignment explanation
Indices: 7597733--7597951 Score: 184
Period size: 71 Copynumber: 3.1 Consensus size: 71
7597723 GAATGAATCA
*
7597733 AATTCATATATTAATTATATTCTTTTCAAAAGAATATTAATTTTCATGTATTTTATATTTCGACC
1 AATTAATATATTAATTATATTCTTTTCAAAAGAATATTAATTTTCATGTATTTTATATTTCGACC
7597798 GAAATT
66 GAAATT
** * * * * * ** * * *
7597804 AATTAATATAATTGTTTATA-T-TTAT-AAATTCG-GTA--AAATAT-ATACAATTAATATTTTG
1 AATTAATAT-ATTAATTATATTCTTTTCAAA--AGAATATTAATTTTCATGTATTTTATATTTCG
*** *
7597862 TGTG-AATCA
63 ACCGAAAT-T
*
7597871 AATTCATATATTAATTATATTCTTTTCAAAAGAATATTAATTTTCATGTATTTTATATTTCGACC
1 AATTAATATATTAATTATATTCTTTTCAAAAGAATATTAATTTTCATGTATTTTATATTTCGACC
7597936 GAAATT
66 GAAATT
7597942 AATTAATATA
1 AATTAATATA
7597952 ATTGTTTATA
Statistics
Matches: 101, Mismatches: 35, Indels: 24
0.63 0.22 0.15
Matches are distributed among these distances:
66 11 0.11
67 23 0.23
68 9 0.09
69 6 0.06
70 9 0.09
71 32 0.32
72 11 0.11
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (71 bp):
AATTAATATATTAATTATATTCTTTTCAAAAGAATATTAATTTTCATGTATTTTATATTTCGACC
GAAATT
Found at i:7597855 original size:138 final size:137
Alignment explanation
Indices: 7597607--7598362 Score: 1153
Period size: 138 Copynumber: 5.5 Consensus size: 137
7597597 TAGAAAAAGG
* * *
7597607 AATTATATTCTTTCCAAAAGAATACTAATTTCCATGTCTTTTATATTTTGACTGAAAATAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATA-TTTGACCGAAATTAATTAA
*
7597672 TATAATTGTTTATATTAATAAATTCGTTAAAATATATACAATTAATATTTTGAATGAATCAAATT
65 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGAATGAATCAAATT
7597737 CATATATT
130 CATATATT
* * *
7597745 AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTATTTTATATTTCGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTT-GACCGAAATTAATTAA
* **
7597810 TATAATTGTTTATATTTATAAATTCGGTAAAATATATACAATTAATATTTTGTGTGAATCAAATT
65 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGAATGAATCAAATT
7597875 CATATATT
130 CATATATT
* * *
7597883 AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTATTTTATATTTCGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTT-GACCGAAATTAATTAA
* * *
7597948 TATAATTGTTTATATTTATAAATTCGGTAAAATATATACAATTAATATTTTGCATGAATAAAATT
65 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGAATGAATCAAATT
7598013 CATATATT
130 CATATATT
* *
7598021 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTGTGA-CTAGAATTACTTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATT-TGACCGA-AATTAATTA
* *
7598085 ATATAACTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTT-ATATGAATCAAA
64 ATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGA-ATGAATCAAA
7598149 TTCATATATT
128 TTCATATATT
* *
7598159 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTGTGA-CTAGAATTACTTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATT-TGACCGA-AATTAATTA
* *
7598223 ATATAACTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTT-ATATGAATCAAA
64 ATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGA-ATGAATCAAA
7598287 TTCATATATT
128 TTCATATATT
* * *
7598297 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTATAT-TTTGACCAAAATTAATTAAT
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTGACCGAAATTAATTAAT
7598361 AT
66 AT
7598363 GTAACACCCC
Statistics
Matches: 586, Mismatches: 27, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
136 15 0.03
137 9 0.02
138 561 0.96
139 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.45
Consensus pattern (137 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTGACCGAAATTAATTAAT
ATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGAATGAATCAAATTC
ATATATT
Found at i:7601959 original size:84 final size:84
Alignment explanation
Indices: 7601809--7602042 Score: 335
Period size: 84 Copynumber: 2.8 Consensus size: 84
7601799 CGTTACTTGG
* * * * *
7601809 TGGATTCAACACTTAGCAACCACCTTAAATTT-AGTGATACAGGGAATCATCACATAGCAACCCC
1 TGGAATCAGCACTTAGCAACCACCTT-TATTTCAGTGATACGGGGAATCAGCACATAGCAACCCC
7601873 TTTCACAATCAAAGATACGA
65 TTTCACAATCAAAGATACGA
7601893 TGGAATCAGCACTTAGCAACCACCTTTATTTCAGTGATACGGGGAATCAGCACATAGCAACCCCT
1 TGGAATCAGCACTTAGCAACCACCTTTATTTCAGTGATACGGGGAATCAGCACATAGCAACCCCT
7601958 TTCACAATCAAAGATACGA
66 TTCACAATCAAAGATACGA
** * * * * *
7601977 TGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATTAGCACTTAGCAACCCC
1 TGGAATCAGCACTTAGCAACCACCTTTA-TTTCAGTGATACGGGGAATCAGCACATAGCAACCCC
7602042 T
65 T
7602043 CGGGGAATCT
Statistics
Matches: 136, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
83 4 0.03
84 102 0.75
85 30 0.22
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (84 bp):
TGGAATCAGCACTTAGCAACCACCTTTATTTCAGTGATACGGGGAATCAGCACATAGCAACCCCT
TTCACAATCAAAGATACGA
Found at i:7601974 original size:42 final size:41
Alignment explanation
Indices: 7601844--7602042 Score: 204
Period size: 43 Copynumber: 4.7 Consensus size: 41
7601834 TAAATTTAGT
* * *
7601844 GATACAGGGAATCATCACATAGCAACCCCTTTCACAATCAAA
1 GATACGGGGAATCAGCACTTAGCAACCCCTTT-ACAATCAAA
* ** **
7601886 GATACGATGGAATCAGCACTTAGCAACCACCTTTA-TTTCAGT
1 GATACG-GGGAATCAGCACTTAGCAACC-CCTTTACAATCAAA
*
7601928 GATACGGGGAATCAGCACATAGCAACCCCTTTCACAATCAAA
1 GATACGGGGAATCAGCACTTAGCAACCCCTTT-ACAATCAAA
* *
7601970 GATACGATGGAATCAGCACTTAGCAACCACCTTTAGAATCAATA
1 GATACG-GGGAATCAGCACTTAGCAACC-CCTTTACAATCAA-A
* *
7602014 -ATTCGGGGAATTAGCACTTAGCAACCCCT
1 GATACGGGGAATCAGCACTTAGCAACCCCT
7602043 CGGGGAATCT
Statistics
Matches: 130, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
40 5 0.04
41 23 0.18
42 42 0.32
43 49 0.38
44 11 0.08
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (41 bp):
GATACGGGGAATCAGCACTTAGCAACCCCTTTACAATCAAA
Found at i:7602045 original size:26 final size:26
Alignment explanation
Indices: 7602016--7602068 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
7602006 AATCAATAAT
7602016 TCGGGGAAT-TAGCACTTAGCAACCCC
1 TCGGGGAATCT-GCACTTAGCAACCCC
*
7602042 TCGGGGAATCTGCACTTAGCGACCCC
1 TCGGGGAATCTGCACTTAGCAACCCC
7602068 T
1 T
7602069 TTTTATCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.21
Consensus pattern (26 bp):
TCGGGGAATCTGCACTTAGCAACCCC
Found at i:7610004 original size:17 final size:18
Alignment explanation
Indices: 7609974--7610007 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
7609964 AGCAACTCAT
7609974 TTATTAATCTAAGATGAG
1 TTATTAATCTAAGATGAG
7609992 TTATTAA-CTAAGATGA
1 TTATTAATCTAAGATGA
7610008 ACTCAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (18 bp):
TTATTAATCTAAGATGAG
Found at i:7610530 original size:43 final size:42
Alignment explanation
Indices: 7610496--7610626 Score: 113
Period size: 42 Copynumber: 3.0 Consensus size: 42
7610486 CTTACATGTT
* * *
7610496 ATTAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACGAA
1 ATTAAATA-CAATGCCAATATCCCAGACAGGGTCTTACACGAA
* * *
7610539 ATTATATACAATGCCAATATCCCAGACATGGTCTTACAAGTAA
1 ATTAAATACAATGCCAATATCCCAGACAGGGTCTTACACG-AA
* ** *
7610582 ATCTCAAAT-CGATGCCAACGTCCCAGAC-GAGGTCTTGCACGAA
1 AT-T-AAATACAATGCCAATATCCCAGACAG-GGTCTTACACGAA
7610625 AT
1 AT
7610627 CACATATTAG
Statistics
Matches: 71, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
42 27 0.38
43 15 0.21
44 26 0.37
45 3 0.04
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (42 bp):
ATTAAATACAATGCCAATATCCCAGACAGGGTCTTACACGAA
Found at i:7610608 original size:44 final size:40
Alignment explanation
Indices: 7610464--7610626 Score: 112
Period size: 43 Copynumber: 3.8 Consensus size: 40
7610454 ATCTTGTACA
* * * **
7610464 ATGCCTACGTCCCAGATGAGGTCTTACATGTTATTAAATATCG
1 ATGCCAACGTCCCAGA-CAGGTCTTACAAGAAATT-AA-ATCG
* * *
7610507 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATTATATACA
1 ATGCCAAC-GTCCCAGACA-GGTCTTACAAGAAATTAAAT-CG
**
7610549 ATGCCAATATCCCAGACATGGTCTTACAAGTAAATCTCAAATCG
1 ATGCCAACGTCCCAGACA-GGTCTTACAAG-AAAT-T-AAATCG
* *
7610593 ATGCCAACGTCCCAGACGAGGTCTTGCACGAAAT
1 ATGCCAACGTCCCAGAC-AGGTCTTACAAGAAAT
7610627 CACATATTAG
Statistics
Matches: 96, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
41 2 0.02
42 29 0.30
43 35 0.36
44 26 0.27
45 4 0.04
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (40 bp):
ATGCCAACGTCCCAGACAGGTCTTACAAGAAATTAAATCG
Found at i:7616874 original size:3 final size:3
Alignment explanation
Indices: 7616866--7616900 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7616856 NNNNNNNNNN
7616866 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7616901 GCCTTTGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7625081 original size:285 final size:286
Alignment explanation
Indices: 7624705--7625293 Score: 1072
Period size: 285 Copynumber: 2.1 Consensus size: 286
7624695 GCTTCTTTGT
* ***
7624705 TCTAAGAAGGTAGCAGGACCGAACAAGGTTTTGTGAAAAAATAACTTTGGTTTCTATATAAACCA
1 TCTAAGAAGGTAGCAGGACCGAACAAGGTCTTGTGAAAAAATAACTGCAGTTTCTATATAAACCA
* *
7624770 ACAAAAGTCTCTAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTG
66 AAAAAAGTCTATAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTG
7624835 AATGTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAATCT
131 AATGTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAATCT
*
7624900 AACATCTCTTTTCCAACAGCTCTACCTCAACAACATTTTTTACAACTGTTCTAGGGTCAAATTGG
196 AACAGCTCTTTTCCAACAGCTCTACCTCAACAACATTTTTTACAACTGTTCTAGGGTCAAATTGG
7624965 CTCAAGGCACCAATAAGAAAGTGGAG
261 CTCAAGGCACCAATAAGAAAGTGGAG
*
7624991 TCTAAGAAGGTAGCAGGGCCGAACAAGGTCTT-TGAAAAAATAACTGCAGTTTCTATATAAACCA
1 TCTAAGAAGGTAGCAGGACCGAACAAGGTCTTGTGAAAAAATAACTGCAGTTTCTATATAAACCA
7625055 AAAAAAGTCTATAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTG
66 AAAAAAGTCTATAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTG
*
7625120 AATGTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTCGTTATTTAAGATATTTTCAATCT
131 AATGTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAATCT
*
7625185 AACAGCTCTTTTCCAATAGCTCTACCTCAACAACATTTTTTACAACTGTTCTAGGGTCAAATTGG
196 AACAGCTCTTTTCCAACAGCTCTACCTCAACAACATTTTTTACAACTGTTCTAGGGTCAAATTGG
*
7625250 CTCAAGGCACCAATAAGAAAGTGGTG
261 CTCAAGGCACCAATAAGAAAGTGGAG
7625276 TCTAAGAAGGTAGCAGGA
1 TCTAAGAAGGTAGCAGGA
7625294 AAGTCTCTAA
Statistics
Matches: 291, Mismatches: 12, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
285 261 0.90
286 30 0.10
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (286 bp):
TCTAAGAAGGTAGCAGGACCGAACAAGGTCTTGTGAAAAAATAACTGCAGTTTCTATATAAACCA
AAAAAAGTCTATAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTG
AATGTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAATCT
AACAGCTCTTTTCCAACAGCTCTACCTCAACAACATTTTTTACAACTGTTCTAGGGTCAAATTGG
CTCAAGGCACCAATAAGAAAGTGGAG
Found at i:7625469 original size:235 final size:235
Alignment explanation
Indices: 7625058--7625510 Score: 834
Period size: 235 Copynumber: 1.9 Consensus size: 235
7625048 TAAACCAAAA
7625058 AAAGTCTATAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTGAAT
1 AAAGTCTATAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTGAAT
* *
7625123 GTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTCGTTATTTAAGATATTTTCAATCTAAC
66 GTCTTCATAAAATACTCGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAATCTAAC
* * *
7625188 AGCTCTTTTCCAATAGCTCTACCTCAACAACATTTTTTACAACTGTTCTAGGGTCAAATTGGCTC
131 AGCTCTTTTCCAACAACTCTACCTCAACAACATTTTTCACAACTGTTCTAGGGTCAAATTGGCTC
7625253 AAGGCACCAATAAGAAAGTGGTGTCTAAGAAGGTAGCAGG
196 AAGGCACCAATAAGAAAGTGGTGTCTAAGAAGGTAGCAGG
*
7625293 AAAGTCTCTAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTGAAT
1 AAAGTCTATAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTGAAT
7625358 GTCTTCATAAAATACTCGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAATCTAAC
66 GTCTTCATAAAATACTCGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAATCTAAC
* *
7625423 ATCTCTTTTCCAACAACTCTACCTCAACAATATTTTTCACAACTGTTCTAGGGTCAAATTGGCTC
131 AGCTCTTTTCCAACAACTCTACCTCAACAACATTTTTCACAACTGTTCTAGGGTCAAATTGGCTC
7625488 AAGGCACCAATAAGAAAGTGGTG
196 AAGGCACCAATAAGAAAGTGGTG
7625511 AAACTAACAA
Statistics
Matches: 210, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
235 210 1.00
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (235 bp):
AAAGTCTATAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTGAAT
GTCTTCATAAAATACTCGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAATCTAAC
AGCTCTTTTCCAACAACTCTACCTCAACAACATTTTTCACAACTGTTCTAGGGTCAAATTGGCTC
AAGGCACCAATAAGAAAGTGGTGTCTAAGAAGGTAGCAGG
Found at i:7634182 original size:74 final size:75
Alignment explanation
Indices: 7634076--7634224 Score: 291
Period size: 74 Copynumber: 2.0 Consensus size: 75
7634066 TATATATTTT
7634076 AGGTAGTGAGAATTGAAAGAACTACCCAGGTAATTACACCCAAATCCAACTTTAAAAGATTTATT
1 AGGTAGTGAGAATTGAAAGAACTACCCAGGTAATTACACCCAAATCCAACTTTAAAAGATTTATT
7634141 TTTATATAAG
66 TTTATATAAG
7634151 AGGTAGTGAG-ATTGAAAGAACTACCCAGGTAATTACACCCAAATCCAACTTTAAAAGATTTATT
1 AGGTAGTGAGAATTGAAAGAACTACCCAGGTAATTACACCCAAATCCAACTTTAAAAGATTTATT
7634215 TTTATATAAG
66 TTTATATAAG
7634225 TTATAAAAAT
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
74 64 0.86
75 10 0.14
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (75 bp):
AGGTAGTGAGAATTGAAAGAACTACCCAGGTAATTACACCCAAATCCAACTTTAAAAGATTTATT
TTTATATAAG
Found at i:7643791 original size:44 final size:44
Alignment explanation
Indices: 7643663--7643809 Score: 143
Period size: 44 Copynumber: 3.3 Consensus size: 44
7643653 TACTGCAACT
* * * **
7643663 TCAGAGAGATAAGATCTATTA-CTTTAATCCGCTCCACTGTAATC
1 TCAGGGAGATAAGAT-TACTAGCTTCAATCTACTCCACTGTAATC
* * * * *
7643707 TCAAGGAGATAGGATTACTAGCTTCAATCTGCTTCGCTGTAATC
1 TCAGGGAGATAAGATTACTAGCTTCAATCTACTCCACTGTAATC
* * * *
7643751 TTAGGGAGATAAGATTTCTGGCTTCAATCTACTCCACTGTAACC
1 TCAGGGAGATAAGATTACTAGCTTCAATCTACTCCACTGTAATC
*
7643795 TCAGGGAAATAAGAT
1 TCAGGGAGATAAGAT
7643810 CTGAAATTCT
Statistics
Matches: 83, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
43 4 0.05
44 79 0.95
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (44 bp):
TCAGGGAGATAAGATTACTAGCTTCAATCTACTCCACTGTAATC
Found at i:7655062 original size:7 final size:7
Alignment explanation
Indices: 7655050--7655096 Score: 71
Period size: 7 Copynumber: 7.0 Consensus size: 7
7655040 TTAGCCTCTC
7655050 CATTTTT
1 CATTTTT
7655057 CA-TTTT
1 CATTTTT
7655063 CATTTTT
1 CATTTTT
7655070 CATTTTT
1 CATTTTT
*
7655077 CA-TTCT
1 CATTTTT
7655083 CATTTTT
1 CATTTTT
7655090 CATTTTT
1 CATTTTT
7655097 TTTGACTCAG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
6 11 0.31
7 25 0.69
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (7 bp):
CATTTTT
Found at i:7655068 original size:13 final size:13
Alignment explanation
Indices: 7655053--7655095 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
7655043 GCCTCTCCAT
7655053 TTTTCA-TTTTCA
1 TTTTCATTTTTCA
7655065 TTTTTCATTTTTCA
1 -TTTTCATTTTTCA
*
7655079 TTCTCATTTTTCA
1 TTTTCATTTTTCA
7655092 TTTT
1 TTTT
7655096 TTTTGACTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 21 0.78
14 6 0.22
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTCATTTTTCA
Found at i:7655073 original size:20 final size:20
Alignment explanation
Indices: 7655050--7655096 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
7655040 TTAGCCTCTC
*
7655050 CATTTTTCATTTTCATTTTT
1 CATTTTTCATTCTCATTTTT
7655070 CATTTTTCATTCTCATTTTT
1 CATTTTTCATTCTCATTTTT
7655090 CATTTTT
1 CATTTTT
7655097 TTTGACTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (20 bp):
CATTTTTCATTCTCATTTTT
Found at i:7656025 original size:17 final size:17
Alignment explanation
Indices: 7655987--7656042 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 17
7655977 TAGATTTCTC
*
7655987 TTTTT-TCATTCTTCTTT
1 TTTTTCTCATT-TTCATT
7656004 CTTTTTCTCATTTTCATT
1 -TTTTTCTCATTTTCATT
7656022 TTTTTCT--TCTTTCATT
1 TTTTTCTCAT-TTTCATT
7656038 TTTTT
1 TTTTT
7656043 TGTTTTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
15 1 0.03
16 12 0.34
17 7 0.20
18 10 0.29
19 5 0.14
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTCTCATTTTCATT
Found at i:7656042 original size:25 final size:23
Alignment explanation
Indices: 7655981--7656051 Score: 61
Period size: 25 Copynumber: 2.9 Consensus size: 23
7655971 TTCATCTAGA
7655981 TTTCTCTTTTTTCATTCTTCTTTCTT
1 TTTCT-TTTTTTCATT-TT-TTTCTT
**
7656007 TTTCTCATTTTCATTTTTTTCTT
1 TTTCTTTTTTTCATTTTTTTCTT
**
7656030 CTTTCATTTTTTTTGTTTTTTT
1 -TTTC-TTTTTTTCATTTTTTT
7656052 TATTTTGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
23 6 0.16
24 6 0.16
25 20 0.54
26 5 0.14
ACGTcount: A:0.06, C:0.17, G:0.01, T:0.76
Consensus pattern (23 bp):
TTTCTTTTTTTCATTTTTTTCTT
Found at i:7656043 original size:17 final size:16
Alignment explanation
Indices: 7655995--7656042 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
7655985 TCTTTTTTCA
7655995 TTCTTCTTTC-TTTTT
1 TTCTTCTTTCATTTTT
* *
7656010 CTCAT-TTTCATTTTT
1 TTCTTCTTTCATTTTT
7656025 TTCTTCTTTCATTTTT
1 TTCTTCTTTCATTTTT
7656041 TT
1 TT
7656043 TGTTTTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.15
15 11 0.41
16 12 0.44
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (16 bp):
TTCTTCTTTCATTTTT
Found at i:7656063 original size:23 final size:23
Alignment explanation
Indices: 7656039--7656103 Score: 73
Period size: 22 Copynumber: 2.9 Consensus size: 23
7656029 TCTTTCATTT
7656039 TTTTTG-TTTTTTTT-ATTTTGA
1 TTTTTGATTTTTTTTCATTTTGA
*
7656060 TTTTTGATTTTTTTTCATTTT-C
1 TTTTTGATTTTTTTTCATTTTGA
* *
7656082 CTTTTGATTTTCTTTTGATTTT
1 TTTTTGATTTT-TTTTCATTTT
7656104 TCTTTTTCCC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 6 0.16
22 18 0.47
23 14 0.37
ACGTcount: A:0.09, C:0.06, G:0.08, T:0.77
Consensus pattern (23 bp):
TTTTTGATTTTTTTTCATTTTGA
Found at i:7656098 original size:11 final size:11
Alignment explanation
Indices: 7656061--7656109 Score: 64
Period size: 12 Copynumber: 4.4 Consensus size: 11
7656051 TTATTTTGAT
7656061 TTTTGATTTT-
1 TTTTGATTTTC
*
7656071 TTTTCATTTTCC
1 TTTTGATTTT-C
7656083 TTTTGATTTTC
1 TTTTGATTTTC
7656094 TTTTGATTTTTC
1 TTTTGA-TTTTC
7656106 TTTT
1 TTTT
7656110 TCCCTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
10 9 0.26
11 7 0.21
12 18 0.53
ACGTcount: A:0.08, C:0.10, G:0.06, T:0.76
Consensus pattern (11 bp):
TTTTGATTTTC
Found at i:7657790 original size:20 final size:20
Alignment explanation
Indices: 7657765--7657802 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7657755 ATTCGCTCTA
7657765 ATTTTTCCAACCTTTGTTCT
1 ATTTTTCCAACCTTTGTTCT
*
7657785 ATTTTTCTAACCTTTGTT
1 ATTTTTCCAACCTTTGTT
7657803 TGGATACCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.21, G:0.05, T:0.58
Consensus pattern (20 bp):
ATTTTTCCAACCTTTGTTCT
Found at i:7659692 original size:85 final size:85
Alignment explanation
Indices: 7659549--7659717 Score: 320
Period size: 85 Copynumber: 2.0 Consensus size: 85
7659539 TAAACATACA
7659549 ATCCTTGTATTAAAAAGTTGAAAATTTTCAGGAAAAGGGGGTATTTCACGTTATTCGAGAAAGAG
1 ATCCTTGTATTAAAAAGTTGAAAATTTTCAGGAAAAGGGGGTATTTCACGTTATTCGAGAAAGAG
7659614 TCATATCCAGTAAGTTAGGG
66 TCATATCCAGTAAGTTAGGG
* *
7659634 ATCCTTGTATTAAAAAGTTGAAAATTTTCAGTAAAATGGGGTATTTCACGTTATTCGAGAAAGAG
1 ATCCTTGTATTAAAAAGTTGAAAATTTTCAGGAAAAGGGGGTATTTCACGTTATTCGAGAAAGAG
7659699 TCATATCCAGTAAGTTAGG
66 TCATATCCAGTAAGTTAGG
7659718 ACATAATGTC
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 82 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.32
Consensus pattern (85 bp):
ATCCTTGTATTAAAAAGTTGAAAATTTTCAGGAAAAGGGGGTATTTCACGTTATTCGAGAAAGAG
TCATATCCAGTAAGTTAGGG
Found at i:7659881 original size:102 final size:102
Alignment explanation
Indices: 7659705--7659925 Score: 399
Period size: 102 Copynumber: 2.2 Consensus size: 102
7659695 AGAGTCATAT
* *
7659705 CCAGTAAGTTAGGACATAATGTCTCGAATTCCCAATACGCGAATAAAAAATGCTTATTTAAAGAT
1 CCAGTAAGTTAGGACACAATGTCTCGAATTCCCAATACGCGAATAAAAAATGATTATTTAAAGAT
7659770 ATTTAACCATCTTGGATTAAAAAAAAGGGGATCACGA
66 ATTTAACCATCTTGGATTAAAAAAAAGGGGATCACGA
7659807 CCAGTAAGTTAGGACACAATGTCTCGAATTCCCAATACGCG-ATAAAAAATGATTATTTAAAAGA
1 CCAGTAAGTTAGGACACAATGTCTCGAATTCCCAATACGCGAATAAAAAATGATTATTT-AAAGA
7659871 TATTTAACCATCTTGGATTAAAAAAAAGGGGATCACGA
65 TATTTAACCATCTTGGATTAAAAAAAAGGGGATCACGA
*
7659909 CCAGTAAGTTAAGACAC
1 CCAGTAAGTTAGGACAC
7659926 GATCCCTTTT
Statistics
Matches: 115, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
101 16 0.14
102 99 0.86
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (102 bp):
CCAGTAAGTTAGGACACAATGTCTCGAATTCCCAATACGCGAATAAAAAATGATTATTTAAAGAT
ATTTAACCATCTTGGATTAAAAAAAAGGGGATCACGA
Found at i:7660625 original size:9 final size:9
Alignment explanation
Indices: 7660608--7660663 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
7660598 ATATGTGAAT
*
7660608 TATAAAAAA
1 TATATAAAA
7660617 TATATAAAA
1 TATATAAAA
7660626 TATATAAAA
1 TATATAAAA
7660635 TATATTTTAAAA
1 TATA---TAAAA
7660647 TATA-AAGAA
1 TATATAA-AA
7660656 TATATAAA
1 TATATAAA
7660664 TATTTATATA
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
8 2 0.05
9 28 0.68
10 2 0.05
12 9 0.22
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (9 bp):
TATATAAAA
Found at i:7660676 original size:30 final size:32
Alignment explanation
Indices: 7660606--7660681 Score: 90
Period size: 30 Copynumber: 2.5 Consensus size: 32
7660596 ATATATGTGA
*
7660606 ATTATAAAAAATATATAAAATATATAAAATAT
1 ATTATATAAAATATATAAAATATATAAAATAT
7660638 ATT-T-TAAAATATA-AAGAATATAT-AAATAT
1 ATTATATAAAATATATAA-AATATATAAAATAT
*
7660667 -TTATATAAAAAATAT
1 ATTATATAAAATATAT
7660682 GTACATATAC
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
28 2 0.05
29 9 0.24
30 23 0.61
31 1 0.03
32 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (32 bp):
ATTATATAAAATATATAAAATATATAAAATAT
Found at i:7660722 original size:16 final size:16
Alignment explanation
Indices: 7660698--7660732 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7660688 ATACGTAGGT
*
7660698 ATATAAAAATTATGAA
1 ATATAAAAATAATGAA
*
7660714 ATATGAAAATAATGAA
1 ATATAAAAATAATGAA
7660730 ATA
1 ATA
7660733 CATGTAAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.29
Consensus pattern (16 bp):
ATATAAAAATAATGAA
Found at i:7660955 original size:4 final size:4
Alignment explanation
Indices: 7660946--7660993 Score: 51
Period size: 4 Copynumber: 12.0 Consensus size: 4
7660936 AACAAAATTT
* * * * *
7660946 TAAA TAAA TATA TAAA TAAA CAAA CAAA TAAC TAAA TAAA CAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
7660994 GGATTAAGAG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.21
Consensus pattern (4 bp):
TAAA
Found at i:7661720 original size:148 final size:150
Alignment explanation
Indices: 7661542--7661841 Score: 532
Period size: 152 Copynumber: 2.0 Consensus size: 150
7661532 TTCGTCTTTT
7661542 CCTTTTCTTTTATGTATATAACC-T-TATATATATATGCTTTAAAAAAACAAAAAAAACAAAAAA
1 CCTTTTCTTTTATGTATATAACCTTATATATATATATGCTTTAAAAAAACAAAAAAAACAAAAAA
* * *
7661605 GGGAATAAATAAATTCGGAGACCGAATGAAAAAAGAAAAACATGAACCTTTCTTCAAAGATTTTC
66 GGGAATAAATAAATTCGGAAACCAAATGAAAAAAGAAAAACAGGAACCTTTCTTCAAAGATTTTC
7661670 GATTTTTATTGATTCAGCAA
131 GATTTTTATTGATTCAGCAA
7661690 CCTTTTCTTTTATGTATATAACCTTATATATATATATATGCTTTAAAAAAACAAAAAAAACAAAA
1 CCTTTTCTTTTATGTATATAACC-T-TATATATATATATGCTTTAAAAAAACAAAAAAAACAAAA
*
7661755 AAGGGAATAAATAAATTCGGAAACCAAATGAAAAAAGAAAAATAGGAACCTTTCTTCAAAGATTT
64 AAGGGAATAAATAAATTCGGAAACCAAATGAAAAAAGAAAAACAGGAACCTTTCTTCAAAGATTT
7661820 TCGATTTTTATTGATTCAGCAA
129 TCGATTTTTATTGATTCAGCAA
7661842 TGTTTTTTTT
Statistics
Matches: 144, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
148 23 0.16
151 1 0.01
152 120 0.83
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.31
Consensus pattern (150 bp):
CCTTTTCTTTTATGTATATAACCTTATATATATATATGCTTTAAAAAAACAAAAAAAACAAAAAA
GGGAATAAATAAATTCGGAAACCAAATGAAAAAAGAAAAACAGGAACCTTTCTTCAAAGATTTTC
GATTTTTATTGATTCAGCAA
Found at i:7668602 original size:19 final size:19
Alignment explanation
Indices: 7668561--7668607 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
7668551 GTTTTTTGAA
* *
7668561 AAAATTAATTTTAATCAAGT
1 AAAATTAA-ATTAATCAAAT
*
7668581 AAAATTAAATTAATGAAAT
1 AAAATTAAATTAATCAAAT
7668600 -AAATTAAA
1 AAAATTAAA
7668608 ATTAGTATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 8 0.33
19 8 0.33
20 8 0.33
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (19 bp):
AAAATTAAATTAATCAAAT
Found at i:7675484 original size:20 final size:20
Alignment explanation
Indices: 7675439--7675485 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
7675429 CATATATCAT
7675439 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTCTTTACTTAC
*
7675458 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTCTTTACTTAC
7675478 TTGCTTAC
1 TTGCTTAC
7675486 ATAAATAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.13, C:0.26, G:0.06, T:0.55
Consensus pattern (20 bp):
TTGCTTACTTCTTTACTTAC
Found at i:7675755 original size:49 final size:49
Alignment explanation
Indices: 7675696--7675823 Score: 202
Period size: 49 Copynumber: 2.6 Consensus size: 49
7675686 ACATGTCAAA
* * * *
7675696 GCCATGTCCCAGACATGGTCTCACATGGGATGTTTCTTGTACTACCAAT
1 GCCATATCCCAGATATGGTCTTACATGGGATGTTTCCTGTACTACCAAT
*
7675745 GCCATATCCCAGATATGGTCTTACATGGGATGTTTCCTGTACTGCCAAT
1 GCCATATCCCAGATATGGTCTTACATGGGATGTTTCCTGTACTACCAAT
*
7675794 GTCATATCCCAGATATGGTCTTACATGGGA
1 GCCATATCCCAGATATGGTCTTACATGGGA
7675824 GTTCTCATAT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.31
Consensus pattern (49 bp):
GCCATATCCCAGATATGGTCTTACATGGGATGTTTCCTGTACTACCAAT
Found at i:7675944 original size:50 final size:52
Alignment explanation
Indices: 7675740--7675944 Score: 156
Period size: 50 Copynumber: 4.0 Consensus size: 52
7675730 TCTTGTACTA
* * * * *
7675740 CCAATGCCATATCCCAGATATGGTCTTACATGGGA-TGT--TTCCTGTACTG
1 CCAATGCCATATCCCAGACATGGTCTTACATGGGACTCTCATACCCGTAATG
* * * * *
7675789 CCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGT--T-
1 CCAATGCCATATCCCAGACATGGTCTTACATGGGA-CTCTCATACCCGTAATG
* * * *
7675839 CCCATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAACCTCAATAATG
1 CCAATGCCATATCCCAGACATGGTCTTACATGGGA-CTCTCAT-ACC-C-GTAATG
* * *
7675895 CCAATGCCATATCTCAGACATGGTCTTACAAGGGA-TCTCAT-CCCCTAATG
1 CCAATGCCATATCCCAGACATGGTCTTACATGGGACTCTCATACCCGTAATG
7675945 TCATGACATT
Statistics
Matches: 125, Mismatches: 21, Indels: 19
0.76 0.13 0.12
Matches are distributed among these distances:
49 34 0.27
50 41 0.33
51 6 0.05
52 2 0.02
53 5 0.04
54 6 0.05
55 1 0.01
56 30 0.24
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (52 bp):
CCAATGCCATATCCCAGACATGGTCTTACATGGGACTCTCATACCCGTAATG
Found at i:7682925 original size:20 final size:20
Alignment explanation
Indices: 7682900--7682938 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7682890 TTGCTTCTTC
7682900 TTTACTTACTCTCTTACTTG
1 TTTACTTACTCTCTTACTTG
*
7682920 TTTACTTACTTTCTTACTT
1 TTTACTTACTCTCTTACTT
7682939 ATAACTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.23, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTACTTACTCTCTTACTTG
Found at i:7683262 original size:50 final size:50
Alignment explanation
Indices: 7683187--7683332 Score: 168
Period size: 50 Copynumber: 2.9 Consensus size: 50
7683177 TTTCCTGCAC
* * * * * * **
7683187 TGCCAATTCCATATCCCATATATGGTTTTACATGGGAGTTCTCATATCGG
1 TGCCAACTCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGG
* * *
7683237 TGCCCA-TGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACT-CCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGG
*
7683287 TGCCAACTCTATGTCCCAGACATGGTCTTACGTGGGACCTCTCATA
1 TGCCAACTCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATA
7683333 ACCTCAATAA
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
49 1 0.01
50 78 0.98
51 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAACTCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGG
Found at i:7691543 original size:43 final size:44
Alignment explanation
Indices: 7691496--7691591 Score: 140
Period size: 44 Copynumber: 2.2 Consensus size: 44
7691486 TTGATATCTC
* *
7691496 AAGTCCATGTTT-TAACATGGAAATTAAGGAAGAATTGATGAAA
1 AAGTCCATGTTTATAACATGGAAATTAAGAAAGAATTGACGAAA
* *
7691539 AAGTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAA
1 AAGTCCATGTTTATAACATGGAAATTAAGAAAGAATTGACGAAA
*
7691583 AAGACCATG
1 AAGTCCATG
7691592 GTTTGACCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 12 0.26
44 35 0.74
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.25
Consensus pattern (44 bp):
AAGTCCATGTTTATAACATGGAAATTAAGAAAGAATTGACGAAA
Found at i:7691603 original size:44 final size:44
Alignment explanation
Indices: 7691500--7691605 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 44
7691490 TATCTCAAGT
* * * * *
7691500 CCATGTTT-TAACATGGAAATTAAGGAAGAATTGATGAAAAAGT
1 CCATGTTTAGAACATGGCAATTAAGAAAGAATTGACGAAAAAGA
* *
7691543 CCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
1 CCATGTTTAGAACATGGCAATTAAGAAAGAATTGACGAAAAAGA
*
7691587 CCATGGTTT-GACCATGGCA
1 CCAT-GTTTAGAACATGGCA
7691606 GTAAGTGTGC
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 8 0.15
44 42 0.78
45 4 0.07
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (44 bp):
CCATGTTTAGAACATGGCAATTAAGAAAGAATTGACGAAAAAGA
Found at i:7691673 original size:50 final size:49
Alignment explanation
Indices: 7691612--7691842 Score: 177
Period size: 50 Copynumber: 4.7 Consensus size: 49
7691602 GGCAGTAAGT
* * *
7691612 GTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATAGACCGAGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-AGAGGA
** *
7691662 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACA-CGAAAAGAGAAAA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG--AAGAG--GA
** * * *
7691714 AAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCG-GGATGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAGAGGA
* * * * * *
7691761 GTGCTAGTGTAAGATCATGTTTGGGACATGACATCGGCACCGATATG-TGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-A-GAGGA
* * *
7691811 -TCCCA-TGTAAGACCATATCTGGGATATGGCAT
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCAT
7691843 TGGCGTCCTA
Statistics
Matches: 142, Mismatches: 30, Indels: 20
0.74 0.16 0.10
Matches are distributed among these distances:
47 32 0.23
48 24 0.17
49 6 0.04
50 42 0.30
51 2 0.01
52 36 0.25
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (49 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAGAGGA
Done.