Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 23 of 79
Found at i:7694973 original size:20 final size:20
Alignment explanation
Indices: 7694948--7694985 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7694938 AGGGTGATTG
7694948 CTTTGCAATGCTCCTTGCTA
1 CTTTGCAATGCTCCTTGCTA
*
7694968 CTTTGCAATGTTCCTTGC
1 CTTTGCAATGCTCCTTGC
7694986 CTTGTGTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.29, G:0.16, T:0.42
Consensus pattern (20 bp):
CTTTGCAATGCTCCTTGCTA
Found at i:7697696 original size:42 final size:42
Alignment explanation
Indices: 7697649--7697729 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
7697639 TAAATCCAAC
* * *
7697649 AACCCATGTTTATCTTCTCCTCTTTTAAATTCTTTTTTCAAA
1 AACCCAAGATTATCTTCTCCTCTTTTAAATTATTTTTTCAAA
*
7697691 AACCCAAGATTATCTTCTCCTTTTTTAAATTATTTTTTC
1 AACCCAAGATTATCTTCTCCTCTTTTAAATTATTTTTTC
7697730 TAAGATAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.25, C:0.22, G:0.02, T:0.51
Consensus pattern (42 bp):
AACCCAAGATTATCTTCTCCTCTTTTAAATTATTTTTTCAAA
Found at i:7706100 original size:57 final size:57
Alignment explanation
Indices: 7705994--7706104 Score: 177
Period size: 57 Copynumber: 1.9 Consensus size: 57
7705984 ACACGTATAA
7705994 AGGAAACAAACAACTCTTCCATTATATCAATAATCCTGCTAAGGATATAAACTATGG
1 AGGAAACAAACAACTCTTCCATTATATCAATAATCCTGCTAAGGATATAAACTATGG
* * * * *
7706051 AGGAGACAAGCAACTCTTCCATTATATCAATAATCCTGTTGAGGTTATAAACTA
1 AGGAAACAAACAACTCTTCCATTATATCAATAATCCTGCTAAGGATATAAACTA
7706105 CATCGTGAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.28
Consensus pattern (57 bp):
AGGAAACAAACAACTCTTCCATTATATCAATAATCCTGCTAAGGATATAAACTATGG
Found at i:7721983 original size:20 final size:20
Alignment explanation
Indices: 7721946--7722009 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
7721936 AGACAAGCTG
* * *
7721946 CCAGTATTGTGGAGAAGCCA
1 CCAGTAATGAGGATAAGCCA
* **
7721966 CCAGTAATGCA-GTTAAGCTG
1 CCAGTAATG-AGGATAAGCCA
7721986 CCAGTAATGAGGATAAGCCA
1 CCAGTAATGAGGATAAGCCA
7722006 CCAG
1 CCAG
7722010 AATTGAAAAC
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.19
Consensus pattern (20 bp):
CCAGTAATGAGGATAAGCCA
Found at i:7722024 original size:40 final size:40
Alignment explanation
Indices: 7721926--7722024 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 40
7721916 AGATAAATTG
* *
7721926 CCAGAATTGAAGACAAGCTGCCAGTATTGTGGAGAAGCCA
1 CCAGAATTGAAGACAAGCTGCCAGTAATGAGGAGAAGCCA
* ** *
7721966 CCAGTAA-TGCAGTTAAGCTGCCAGTAATGAGGATAAGCCA
1 CCAG-AATTGAAGACAAGCTGCCAGTAATGAGGAGAAGCCA
*
7722006 CCAGAATTGAAAACAAGCT
1 CCAGAATTGAAGACAAGCT
7722025 ACTAGTACTT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.04
40 43 0.91
41 2 0.04
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.18
Consensus pattern (40 bp):
CCAGAATTGAAGACAAGCTGCCAGTAATGAGGAGAAGCCA
Found at i:7722174 original size:38 final size:37
Alignment explanation
Indices: 7722099--7722190 Score: 96
Period size: 38 Copynumber: 2.4 Consensus size: 37
7722089 ACAAAATAGT
*
7722099 ATAATAGGCATGATTAAAACATGCAATCTGTAGCAAAAA
1 ATAAT-GGCATGATTAAAACATGCAATCAGTAGC-AAAA
* **
7722138 ATAATGGCATGATTCAAACATGTGATCAGT-GACAAAA
1 ATAATGGCATGATTAAAACATGCAATCAGTAG-CAAAA
*
7722175 ATAGTGGCATGGATTA
1 ATAATGGCAT-GATTA
7722191 TAATGCATTG
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
37 14 0.31
38 26 0.58
39 5 0.11
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25
Consensus pattern (37 bp):
ATAATGGCATGATTAAAACATGCAATCAGTAGCAAAA
Found at i:7722367 original size:40 final size:40
Alignment explanation
Indices: 7722317--7722427 Score: 150
Period size: 40 Copynumber: 2.8 Consensus size: 40
7722307 TAACGTTACT
* * *
7722317 AGTCACAATTACAGATTAGTGGCTTATTTATAACATAACC
1 AGTCTCAATTACAGATCAGTGGCTTATTTATAACATAAAC
* *
7722357 AGTCTTAATTACAAATCAGTGGCTTATTTATAACATAAAC
1 AGTCTCAATTACAGATCAGTGGCTTATTTATAACATAAAC
* *
7722397 AGTCTCAATGACAGATCAATGGCTTACTTTA
1 AGTCTCAATTACAGATCAGTGGCTTA-TTTA
7722428 ATATCACAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 57 0.93
41 4 0.07
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (40 bp):
AGTCTCAATTACAGATCAGTGGCTTATTTATAACATAAAC
Found at i:7726441 original size:20 final size:20
Alignment explanation
Indices: 7726416--7726461 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7726406 TTATCTGCAT
* *
7726416 TATTGGTGGCTTGTCCATAA
1 TATTGGTAGCTTGTCCACAA
*
7726436 TATTGGTAGCTTGTCTACAA
1 TATTGGTAGCTTGTCCACAA
7726456 TATTGG
1 TATTGG
7726462 CAGTTTATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.24, T:0.41
Consensus pattern (20 bp):
TATTGGTAGCTTGTCCACAA
Found at i:7726509 original size:60 final size:60
Alignment explanation
Indices: 7726404--7726559 Score: 199
Period size: 60 Copynumber: 2.6 Consensus size: 60
7726394 AGTACTAGTT
* * * * *** * *
7726404 GTTTATCTGCATTATTGGTGGCTTGTCCATAATATTGGTAGCTTGTCTACAATATTGGCA
1 GTTTATCTGAATTACTGGTGGCTTGTCCACAATACTAACAACTTGTCTACAATACTGGCA
7726464 GTTTATCTGAATTACTGGTGGCTTGTCCACAATACTAACAACTTGTCTACAATACTGGCA
1 GTTTATCTGAATTACTGGTGGCTTGTCCACAATACTAACAACTTGTCTACAATACTGGCA
*
7726524 GTTTATCTGCAA-TACTGGTGGATTGTCCACAA-ACTA
1 GTTTATCTG-AATTACTGGTGGCTTGTCCACAATACTA
7726560 GTGTGTTATT
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
59 4 0.05
60 79 0.93
61 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (60 bp):
GTTTATCTGAATTACTGGTGGCTTGTCCACAATACTAACAACTTGTCTACAATACTGGCA
Found at i:7731295 original size:35 final size:34
Alignment explanation
Indices: 7731255--7731353 Score: 126
Period size: 35 Copynumber: 2.9 Consensus size: 34
7731245 ACGATTTAAC
7731255 ATAGTGGCATGCTTAACATGCGAATCAAACTCAGA
1 ATAGTGGCATGCTTAACATGCGAATCAAA-TCAGA
* *
7731290 CTAGTGGCATGCTTAACATGTGAATCATAATCAGA
1 ATAGTGGCATGCTTAACATGCGAATCA-AATCAGA
* * * *
7731325 ATAATAGCACGCTTAACACGCGAATCAAA
1 ATAGTGGCATGCTTAACATGCGAATCAAA
7731354 ATACCAATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
34 2 0.04
35 51 0.93
36 2 0.04
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.23
Consensus pattern (34 bp):
ATAGTGGCATGCTTAACATGCGAATCAAATCAGA
Found at i:7741895 original size:25 final size:25
Alignment explanation
Indices: 7741835--7741895 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
7741825 CTCCTAAATT
*
7741835 TTAATTTAATTATCTAATTTTTCAA
1 TTAATTAAATTATCTAATTTTTCAA
* *
7741860 TTTATTGAATTAT-TAATATTTT-ATA
1 TTAATTAAATTATCTAAT-TTTTCA-A
7741885 TTAATTAAATT
1 TTAATTAAATT
7741896 TTTGAGAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 5 0.17
25 25 0.83
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (25 bp):
TTAATTAAATTATCTAATTTTTCAA
Found at i:7746736 original size:16 final size:16
Alignment explanation
Indices: 7746715--7746749 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7746705 TATTTTAGAG
7746715 ATTTCACCTTACGTTA
1 ATTTCACCTTACGTTA
*
7746731 ATTTCACCTTGCGTTA
1 ATTTCACCTTACGTTA
7746747 ATT
1 ATT
7746750 AAAGAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.46
Consensus pattern (16 bp):
ATTTCACCTTACGTTA
Found at i:7748344 original size:21 final size:21
Alignment explanation
Indices: 7748326--7748366 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7748316 ATTCCCTTCT
7748326 TTCTCTTCTCTTTTTCCTTTA
1 TTCTCTTCTCTTTTTCCTTTA
* * *
7748347 TTTTTTTCTCTTTTTTCTTT
1 TTCTCTTCTCTTTTTCCTTT
7748367 CCGAAAGAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (21 bp):
TTCTCTTCTCTTTTTCCTTTA
Found at i:7769078 original size:98 final size:99
Alignment explanation
Indices: 7768901--7769095 Score: 383
Period size: 98 Copynumber: 2.0 Consensus size: 99
7768891 AATAATGTCG
7768901 TGAGAATAATATGATTATTCTTGAAAGGTCCTTAGTTAAGTATTAGTGTTGACTAGGACAACAAT
1 TGAGAATAATATGATTATTCTTGAAAGGTCCTTAGTTAAGTATTAGTGTTGACTAGGACAACAAT
7768966 AATGCATTAAGACTAACATGTAGTTGATTGATCT
66 AATGCATTAAGACTAACATGTAGTTGATTGATCT
7769000 TGAGAAT-ATATGATTATTCTTGAAAGGTCCTTAGTTAAGTATTAGTGTTGACTAGGACAACAAT
1 TGAGAATAATATGATTATTCTTGAAAGGTCCTTAGTTAAGTATTAGTGTTGACTAGGACAACAAT
7769064 AATGCATTAAGACTAACATGTAGTTGATTGAT
66 AATGCATTAAGACTAACATGTAGTTGATTGAT
7769096 GATAAAGAGT
Statistics
Matches: 96, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
98 89 0.93
99 7 0.07
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (99 bp):
TGAGAATAATATGATTATTCTTGAAAGGTCCTTAGTTAAGTATTAGTGTTGACTAGGACAACAAT
AATGCATTAAGACTAACATGTAGTTGATTGATCT
Found at i:7781852 original size:22 final size:22
Alignment explanation
Indices: 7781824--7781868 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7781814 GTTCACTCTT
7781824 TGCTGAGGTATCTTCTATTTCC
1 TGCTGAGGTATCTTCTATTTCC
7781846 TGCTGAGGTATCTTCTATTTCC
1 TGCTGAGGTATCTTCTATTTCC
7781868 T
1 T
7781869 CTACGTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (22 bp):
TGCTGAGGTATCTTCTATTTCC
Found at i:7787133 original size:14 final size:15
Alignment explanation
Indices: 7787114--7787146 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7787104 CATTACTTTC
7787114 ATGTTAA-TATTAAT
1 ATGTTAATTATTAAT
*
7787128 ATGTTAATTTTTAAT
1 ATGTTAATTATTAAT
7787143 ATGT
1 ATGT
7787147 AGTGGGACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (15 bp):
ATGTTAATTATTAAT
Found at i:7789515 original size:22 final size:22
Alignment explanation
Indices: 7789490--7789533 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7789480 AAGCCACCAC
7789490 TTGCAGATAAACTACCACTGAT
1 TTGCAGATAAACTACCACTGAT
*
7789512 TTGCAGATAAGCTACCACTGAT
1 TTGCAGATAAACTACCACTGAT
7789534 AATACTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (22 bp):
TTGCAGATAAACTACCACTGAT
Found at i:7789578 original size:50 final size:50
Alignment explanation
Indices: 7789503--7789668 Score: 187
Period size: 50 Copynumber: 3.4 Consensus size: 50
7789493 CAGATAAACT
7789503 ACCACTGATTTGCAGATAAGCTACCACTGATAATACTTTATGGACAATCC
1 ACCACTGATTTGCAGATAAGCTACCACTGATAATACTTTATGGACAATCC
* * ***
7789553 ACCACTGATTTGTAGATAAGCTACCACTGATAATAGTTTATGGACAGGAC
1 ACCACTGATTTGCAGATAAGCTACCACTGATAATACTTTATGGACAATCC
* * * * * *
7789603 ACCAC--ATATGCAAATACA-CTTCCACTGA-AACACTTTGTGGACAAGCC
1 ACCACTGATTTGCAGATA-AGCTACCACTGATAATACTTTATGGACAATCC
*
7789650 ACCACTGATTTCCAGATAA
1 ACCACTGATTTGCAGATAA
7789669 ATCTCCACTT
Statistics
Matches: 96, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
47 19 0.20
48 18 0.19
49 9 0.09
50 50 0.52
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (50 bp):
ACCACTGATTTGCAGATAAGCTACCACTGATAATACTTTATGGACAATCC
Found at i:7814204 original size:40 final size:40
Alignment explanation
Indices: 7814158--7814236 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
7814148 AAATGTGTTC
7814158 AGGGGTACCAAAGTACAAACAGGGACACGTATGTGCAATT
1 AGGGGTACCAAAGTACAAACAGGGACACGTATGTGCAATT
* * **
7814198 AGGGGTACCGAAGTACGAACAGGGGTACGTATGTGCAAT
1 AGGGGTACCAAAGTACAAACAGGGACACGTATGTGCAAT
7814237 CATTCAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.34, C:0.16, G:0.32, T:0.18
Consensus pattern (40 bp):
AGGGGTACCAAAGTACAAACAGGGACACGTATGTGCAATT
Found at i:7836428 original size:24 final size:25
Alignment explanation
Indices: 7836401--7836447 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
7836391 ACTAGTCACA
7836401 GAGAGAATTGAGGAG-GAATATTTG
1 GAGAGAATTGAGGAGAGAATATTTG
*
7836425 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAGAGAATATT
7836448 GGGATTTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.38, C:0.00, G:0.36, T:0.26
Consensus pattern (25 bp):
GAGAGAATTGAGGAGAGAATATTTG
Found at i:7837108 original size:27 final size:27
Alignment explanation
Indices: 7837078--7837358 Score: 278
Period size: 27 Copynumber: 10.4 Consensus size: 27
7837068 ATACCCTCAA
* * **
7837078 AGGGTAAAATGACTGAAATGCCCCCAT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *
7837105 AGGGTAAAATGACCGAAATATCCCC-GT
1 AGGGTAAAATGACCGTAAT-GCCCCTGT
* * * *
7837132 AGGGTAGAAT-ACCGAAATACCCCTAT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *
7837158 AAGGTAAAATGACCGTAATACCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* * *
7837185 AGGGTAAAATAAGCATAATGCCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
*
7837212 AGGGTGAAATGACCGTAATGCCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* * *
7837239 AGGGTGAAATGACTGTAATGCCCGTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *
7837266 AGGGTAAAATGACCGTAATACCCCTAT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *** *
7837293 AGGTTAAAATGTTTGTAATGCCCCTAT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* **
7837320 AAGGTAAAATGGTCGTAATGCCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
7837347 AGGGTAAAATGA
1 AGGGTAAAATGA
7837359 AGATATACTG
Statistics
Matches: 213, Mismatches: 38, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
25 4 0.02
26 17 0.08
27 188 0.88
28 4 0.02
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (27 bp):
AGGGTAAAATGACCGTAATGCCCCTGT
Found at i:7837489 original size:26 final size:26
Alignment explanation
Indices: 7837436--7837489 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
7837426 ACTGTTACTA
* *
7837436 GCAGCTTTACTGCGATACTGTTGCTG
1 GCAGCTTTACTGCGATACTATTGATG
* * *
7837462 GCAGCTTTGCTGTGATGCTATTGATG
1 GCAGCTTTACTGCGATACTATTGATG
7837488 GC
1 GC
7837490 TTTGTGCCGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.15, C:0.20, G:0.30, T:0.35
Consensus pattern (26 bp):
GCAGCTTTACTGCGATACTATTGATG
Found at i:7837524 original size:32 final size:32
Alignment explanation
Indices: 7837483--7837746 Score: 157
Period size: 32 Copynumber: 8.3 Consensus size: 32
7837473 GTGATGCTAT
*
7837483 TGATGGCTTTGTGCCGATCATAGTACCGTTAC
1 TGATGGCTTTGTGCCGATCATAGTACTGTTAC
* * * * * *
7837515 TGATGGCTTTATGGCAATCATAGTATTATCAC
1 TGATGGCTTTGTGCCGATCATAGTACTGTTAC
* * * *
7837547 TGATGACTTTGTGTCGATCATATTACTGTTAT
1 TGATGGCTTTGTGCCGATCATAGTACTGTTAC
* *
7837579 TGATGG-TTGTGTGCTGATCAT-TTCACTGTTAC
1 TGATGGCTT-TGTGCCGATCATAGT-ACTGTTAC
* *
7837611 GGATGG-TTGTGTGCCGATCATA-TCACTGCTAC
1 TGATGGCTT-TGTGCCGATCATAGT-ACTGTTAC
* ** **
7837643 TGATGACTTTGTGTTGATCAT-GTTACCATTAC
1 TGATGGCTTTGTGCCGATCATAG-TACTGTTAC
* * *
7837675 TAATGG-TTGTGTGCCAATCATA-TCACTGCTAC
1 TGATGGCTT-TGTGCCGATCATAGT-ACTGTTAC
* * * *
7837707 TAATGGCTTTGTGCCAATCACATTACTG-TAC
1 TGATGGCTTTGTGCCGATCATAGTACTGTTAC
*
7837738 TTATGGCTT
1 TGATGGCTT
7837747 ATAGTCATTC
Statistics
Matches: 181, Mismatches: 40, Indels: 23
0.74 0.16 0.09
Matches are distributed among these distances:
31 18 0.10
32 157 0.87
33 6 0.03
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATAGTACTGTTAC
Found at i:7837629 original size:64 final size:64
Alignment explanation
Indices: 7837556--7837720 Score: 181
Period size: 64 Copynumber: 2.6 Consensus size: 64
7837546 CTGATGACTT
* * * * * ** *
7837556 TGTGTCGATCATATTACTGTTATTGATG-GTTGTGTGCTGATCAT-TTCACTGTTACGGATGGTT
1 TGTGCCGATCATATCACTGCTACTGATGACTT-TGTGCTGATCATGTT-ACCATTACGAATGGTT
7837619 G
64 G
* *
7837620 TGTGCCGATCATATCACTGCTACTGATGACTTTGTGTTGATCATGTTACCATTACTAATGGTTG
1 TGTGCCGATCATATCACTGCTACTGATGACTTTGTGCTGATCATGTTACCATTACGAATGGTTG
* * *
7837684 TGTGCCAATCATATCACTGCTACTAATGGCTTTGTGC
1 TGTGCCGATCATATCACTGCTACTGATGACTTTGTGC
7837721 CAATCACATT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
64 81 0.95
65 4 0.05
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (64 bp):
TGTGCCGATCATATCACTGCTACTGATGACTTTGTGCTGATCATGTTACCATTACGAATGGTTG
Found at i:7837720 original size:96 final size:96
Alignment explanation
Indices: 7837545--7837726 Score: 231
Period size: 96 Copynumber: 1.9 Consensus size: 96
7837535 TAGTATTATC
** * * ** * *
7837545 ACTGATGACTTTGTGTCGATCATATTACTGTTATTGATGGTTGTGTGCTGATCATTTCACTGTTA
1 ACTGATGACTTTGTGTCGATCATATTACCATTACTAATGGTTGTGTGCCAATCATATCACTGCTA
* *
7837610 CGGATGGTTGTGTGCCGATCATATCACTGCT
66 CGAATGGTTGTGTGCCAATCATATCACTGCT
* *
7837641 ACTGATGACTTTGTGTTGATCATGTTACCATTACTAATGGTTGTGTGCCAATCATATCACTGCTA
1 ACTGATGACTTTGTGTCGATCATATTACCATTACTAATGGTTGTGTGCCAATCATATCACTGCTA
*
7837706 CTAATGGCTT-TGTGCCAATCA
66 CGAATGG-TTGTGTGCCAATCA
7837727 CATTACTGTA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
96 70 0.97
97 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.39
Consensus pattern (96 bp):
ACTGATGACTTTGTGTCGATCATATTACCATTACTAATGGTTGTGTGCCAATCATATCACTGCTA
CGAATGGTTGTGTGCCAATCATATCACTGCT
Found at i:7848841 original size:41 final size:41
Alignment explanation
Indices: 7848780--7848928 Score: 210
Period size: 41 Copynumber: 3.6 Consensus size: 41
7848770 ACCGAAGTCT
* *
7848780 AAACAGGGGAACGTACGTGCAATTCAGGGGTACCAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTAC
* *
7848821 AAACAGGGGCACATATGTGCAATTCAGGGGTATTC-AAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTA-CCAAAGTAC
* * *
7848862 AAATAGGGGCACGTATGTGCAATTTAAGGGTACCAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTAC
*
7848903 AAACAGGGGCACGTATGTGTAATTCA
1 AAACAGGGGCACGTATGTGCAATTCA
7848929 TCATTTTTCT
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
40 1 0.01
41 92 0.98
42 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.20
Consensus pattern (41 bp):
AAACAGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTAC
Found at i:7851020 original size:22 final size:22
Alignment explanation
Indices: 7850995--7851036 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7850985 TGATTTCGAC
*
7850995 GATTCTTCGAAGACCGATCGGT
1 GATTCTTCGAAGACCAATCGGT
7851017 GATTCTTCGAAGACCAATCG
1 GATTCTTCGAAGACCAATCG
7851037 TGGTGGCTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (22 bp):
GATTCTTCGAAGACCAATCGGT
Found at i:7863659 original size:14 final size:15
Alignment explanation
Indices: 7863630--7863661 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7863620 AAAAACATCA
7863630 TAATTTTATCTATTT
1 TAATTTTATCTATTT
7863645 TAATTTTAT-TATTT
1 TAATTTTATCTATTT
7863659 TAA
1 TAA
7863662 CTATAACCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTATCTATTT
Found at i:7871287 original size:13 final size:13
Alignment explanation
Indices: 7871269--7871303 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
7871259 GGGCTCACAC
7871269 GCCCGTGTGGTCT
1 GCCCGTGTGGTCT
7871282 GCCCGTGTGGTCT
1 GCCCGTGTGGTCT
7871295 GCCCGTGTG
1 GCCCGTGTG
7871304 AGCCCACACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.00, C:0.31, G:0.40, T:0.29
Consensus pattern (13 bp):
GCCCGTGTGGTCT
Found at i:7876707 original size:14 final size:14
Alignment explanation
Indices: 7876688--7876716 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7876678 ACTAAAGATG
7876688 AAATAACTACACTA
1 AAATAACTACACTA
7876702 AAATAACTACACTA
1 AAATAACTACACTA
7876716 A
1 A
7876717 GGGCACTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAACTACACTA
Found at i:7878163 original size:104 final size:104
Alignment explanation
Indices: 7878037--7878253 Score: 425
Period size: 104 Copynumber: 2.1 Consensus size: 104
7878027 ACATAGATAT
*
7878037 AATTAATATATGAATTTGATTCATACAAAATATTAATCGTATATATTTTACCGATTTTATTAATA
1 AATTAATATATGAATTTAATTCATACAAAATATTAATCGTATATATTTTACCGATTTTATTAATA
7878102 TAAACAATTTTATTTTGGTCAAAATATAAAAGACATGGA
66 TAAACAATTTTATTTTGGTCAAAATATAAAAGACATGGA
7878141 AATTAATATATGAATTTAATTCATACAAAATATTAATCGTATATATTTTACCGATTTTATTAATA
1 AATTAATATATGAATTTAATTCATACAAAATATTAATCGTATATATTTTACCGATTTTATTAATA
7878206 TAAACAATTTTATTTTGGTCAAAATATAAAAGACATGGA
66 TAAACAATTTTATTTTGGTCAAAATATAAAAGACATGGA
7878245 AATTAATAT
1 AATTAATAT
7878254 TTTGTTGGAA
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 112 1.00
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (104 bp):
AATTAATATATGAATTTAATTCATACAAAATATTAATCGTATATATTTTACCGATTTTATTAATA
TAAACAATTTTATTTTGGTCAAAATATAAAAGACATGGA
Found at i:7878508 original size:139 final size:138
Alignment explanation
Indices: 7878141--7878530 Score: 600
Period size: 139 Copynumber: 2.9 Consensus size: 138
7878131 AAGACATGGA
* *
7878141 AATTAATATATGAATTTAATTCATACAAAATATTAATCGTATATATTTTACCGATTTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGATTTTATTAATA
*
7878206 TAAAC----A-ATT--TT-ATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTTTGTTGGA
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTTTGTTGGA
7878263 AAGAATAT
131 AAGAATAT
* *
7878271 AATTAATATATGAATTTGATTTATACAAAATATTAATTTTATATATTTTACCGATTTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGATTTTATTAATA
*
7878336 TAAACAGTTATATTAAATAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTT-TTGG
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATT-TTGTTGG
7878400 AAAGAATAT
130 AAAGAATAT
* * * * *
7878409 AATTAATATATGAATCTGATTCATAAAAAAATGTTAATTGTATATATTTTACTGAATTTATTAAT
1 AATTAATATATGAATTTGATTCAT-ACAAAATATTAATTGTATATATTTTACCGATTTTATTAAT
7878474 ATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATAT
65 ATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATAT
7878531 ATGAATTTAA
Statistics
Matches: 236, Mismatches: 14, Indels: 11
0.90 0.05 0.04
Matches are distributed among these distances:
130 66 0.28
134 1 0.00
135 3 0.01
137 1 0.00
138 72 0.31
139 93 0.39
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.41
Consensus pattern (138 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGATTTTATTAATA
TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTTTGTTGGA
AAGAATAT
Found at i:7878570 original size:112 final size:114
Alignment explanation
Indices: 7878409--7878646 Score: 363
Period size: 116 Copynumber: 2.1 Consensus size: 114
7878399 GAAAGAATAT
* *
7878409 AATTAATATATGAATCTGATTCATAAAAAAATGTTAATTGTATATATTTTACT-GAATTTATTAA
1 AATTAATATATGAATCTAATTCATAAAAAAATATTAATTGTATATATTTTACTAGAATTTATTAA
*
7878473 TATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGA
66 TATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGA
* * *
7878522 AATTAATATATGAATTTAATTCAT-ACAAAATATTAATTGTATATATTTTATTGAAAGAATTTAT
1 AATTAATATATGAATCTAATTCATAAAAAAATATTAATTGTATATATTTTACT---AGAATTTAT
* *
7878586 TAATATAAACATTTATATTAATTAATTTCAGTCAAAATATAAAAGACGTGGA
63 TAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGA
7878638 AATTAATAT
1 AATTAATAT
7878647 TATTTTGAAA
Statistics
Matches: 113, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
112 25 0.22
113 22 0.19
116 66 0.58
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.40
Consensus pattern (114 bp):
AATTAATATATGAATCTAATTCATAAAAAAATATTAATTGTATATATTTTACTAGAATTTATTAA
TATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGA
Found at i:7879938 original size:23 final size:26
Alignment explanation
Indices: 7879910--7879967 Score: 82
Period size: 28 Copynumber: 2.2 Consensus size: 26
7879900 AAAATTAATG
7879910 ATATATAA-AATATTTTAATAATTAA
1 ATATATAATAATATTTTAATAATTAA
*
7879935 ATATAATCAATAATATTTTAATAATTTA
1 ATAT-AT-AATAATATTTTAATAATTAA
7879963 ATATA
1 ATATA
7879968 ATGATACATG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 4 0.14
26 2 0.07
27 3 0.10
28 20 0.69
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (26 bp):
ATATATAATAATATTTTAATAATTAA
Found at i:7880015 original size:33 final size:33
Alignment explanation
Indices: 7879905--7880016 Score: 110
Period size: 33 Copynumber: 3.5 Consensus size: 33
7879895 TATGTAAAAT
*
7879905 TAATGATATATAAAATATTTTAATAA-TTAA-A
1 TAATGATACATAAAATATTTTAATAATTTAATA
* *
7879936 T-ATAAT-CA-ATAATATTTTAATAATTTAATA
1 TAATGATACATAAAATATTTTAATAATTTAATA
* *
7879966 TAATGATACATGAAATATTTTAA-ATTTTTAATA
1 TAATGATACATAAAATATTTTAATA-ATTTAATA
* *
7879999 TAATGCTATATAAAATAT
1 TAATGATACATAAAATAT
7880017 AAATTAATCT
Statistics
Matches: 65, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
28 14 0.22
29 5 0.08
30 6 0.09
31 5 0.08
32 3 0.05
33 32 0.49
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.44
Consensus pattern (33 bp):
TAATGATACATAAAATATTTTAATAATTTAATA
Found at i:7884626 original size:20 final size:21
Alignment explanation
Indices: 7884583--7884653 Score: 78
Period size: 21 Copynumber: 3.4 Consensus size: 21
7884573 TTAAAAGCAC
7884583 ATAAAATATTATTTAAAAATT
1 ATAAAATATTATTTAAAAATT
7884604 ATAAAATATT-TTTCAAAAA-T
1 ATAAAATATTATTT-AAAAATT
*
7884624 ATAAAATA--ATTAAAATAATT
1 ATAAAATATTATTTAAA-AATT
7884644 ATAGAAATAT
1 ATA-AAATAT
7884654 AAATAATTAC
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
18 3 0.07
19 4 0.09
20 16 0.37
21 20 0.47
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (21 bp):
ATAAAATATTATTTAAAAATT
Found at i:7885801 original size:16 final size:16
Alignment explanation
Indices: 7885780--7885814 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7885770 CTAGTATATT
7885780 TTTTATAT-TTTTAAGA
1 TTTTATATATTTTAA-A
7885796 TTTTATATATTTTAAA
1 TTTTATATATTTTAAA
7885812 TTT
1 TTT
7885815 CAAAATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (16 bp):
TTTTATATATTTTAAA
Found at i:7886866 original size:16 final size:16
Alignment explanation
Indices: 7886845--7886878 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7886835 AATATAGAGA
*
7886845 TTGATTCAAGACTTAT
1 TTGATTCAAGACTGAT
7886861 TTGATTCAAGACTGAT
1 TTGATTCAAGACTGAT
7886877 TT
1 TT
7886879 CAAGACTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (16 bp):
TTGATTCAAGACTGAT
Found at i:7889084 original size:50 final size:49
Alignment explanation
Indices: 7889004--7889098 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 49
7888994 TGCTATGTAA
* *
7889004 TGCTAAACTTGGTCTTTCACTATCTACACTCTTATCACTATTTATACAT
1 TGCTAAACTTAGTCTTCCACTATCTACACTCTTATCACTATTTATACAT
* * *
7889053 TGCTAGAACTTAGTCTTCCATTGTCTCCACTCTTATCACTATTTAT
1 TGCTA-AACTTAGTCTTCCACTATCTACACTCTTATCACTATTTAT
7889099 CCTTTCTTGA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
49 5 0.12
50 35 0.88
ACGTcount: A:0.24, C:0.25, G:0.07, T:0.43
Consensus pattern (49 bp):
TGCTAAACTTAGTCTTCCACTATCTACACTCTTATCACTATTTATACAT
Found at i:7889429 original size:30 final size:30
Alignment explanation
Indices: 7889388--7889452 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
7889378 ATTTCAGGGG
* *
7889388 TCACACACCCGTGTGGCCAGGCCGTGTGCC
1 TCACACACCCGTATGGCCAAGCCGTGTGCC
*
7889418 TCACACGCCCGTATGGCCAAGCCGTGTGCC
1 TCACACACCCGTATGGCCAAGCCGTGTGCC
7889448 TCACA
1 TCACA
7889453 TGGCTGAGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.17, C:0.40, G:0.26, T:0.17
Consensus pattern (30 bp):
TCACACACCCGTATGGCCAAGCCGTGTGCC
Found at i:7893327 original size:23 final size:24
Alignment explanation
Indices: 7893309--7893355 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
7893299 TCCTGTACAT
7893309 GTATGCTCACACGAGCTGTGAATCA
1 GTATGCTCACACGAGCTGTGAAT-A
* *
7893334 GTATGCTCACATGAGCTATGAA
1 GTATGCTCACACGAGCTGTGAA
7893356 AATGGGCCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
GTATGCTCACACGAGCTGTGAATA
Found at i:7896225 original size:4 final size:4
Alignment explanation
Indices: 7896216--7896242 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
7896206 TTCTTCTCAT
7896216 TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTT
7896243 ATTTAATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:7897547 original size:136 final size:136
Alignment explanation
Indices: 7897377--7897649 Score: 537
Period size: 136 Copynumber: 2.0 Consensus size: 136
7897367 GTTTTGAACT
7897377 AATAATGGAATTCCAGTATATTGATCTTGCTCATAGGAATAATTCCAAGAAACAATCCAAGAAAT
1 AATAATGGAATTCCAGTATATTGATCTTGCTCATAGGAATAATTCCAAGAAACAATCCAAGAAAT
7897442 GAACAATTTTGAGAAAAAATGGATTGTTCTGTAAATGTGTTTTTGGTCTAGTTCATGTTGAAAAT
66 GAACAATTTTGAGAAAAAATGGATTGTTCTGTAAATGTGTTTTTGGTCTAGTTCATGTTGAAAAT
7897507 TTTCAA
131 TTTCAA
7897513 AATAATGGAATTCCAGTATATTGATCTTGCTCATAGGAATAATTCCAAGAAACAATCCAAGAAAT
1 AATAATGGAATTCCAGTATATTGATCTTGCTCATAGGAATAATTCCAAGAAACAATCCAAGAAAT
*
7897578 GAACAATTTTGAGAAAAAATGGATTGTTCTGTAAATGTGTTTTTGGTCTAGTTCATGTTGAAATT
66 GAACAATTTTGAGAAAAAATGGATTGTTCTGTAAATGTGTTTTTGGTCTAGTTCATGTTGAAAAT
7897643 TTTCAA
131 TTTCAA
7897649 A
1 A
7897650 GAATTTGGGC
Statistics
Matches: 136, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 136 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (136 bp):
AATAATGGAATTCCAGTATATTGATCTTGCTCATAGGAATAATTCCAAGAAACAATCCAAGAAAT
GAACAATTTTGAGAAAAAATGGATTGTTCTGTAAATGTGTTTTTGGTCTAGTTCATGTTGAAAAT
TTTCAA
Found at i:7900000 original size:26 final size:26
Alignment explanation
Indices: 7899971--7900051 Score: 108
Period size: 26 Copynumber: 3.1 Consensus size: 26
7899961 TGGAGGAAGT
*
7899971 ATACTGTTACTAGCAGCTTTGTTGCG
1 ATACTGTTACTGGCAGCTTTGTTGCG
*
7899997 ATACTGTTACTGGCAGCTTTGTTGTG
1 ATACTGTTACTGGCAGCTTTGTTGCG
* * * *
7900023 ATACTATTACTGGTAGTTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGTTGCG
7900049 ATA
1 ATA
7900052 TTGGTGTGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGTTGCG
Found at i:7908700 original size:16 final size:16
Alignment explanation
Indices: 7908679--7908709 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7908669 TTCATTATTA
*
7908679 TGTCTTTTATATTTTT
1 TGTCTTTCATATTTTT
7908695 TGTCTTTCATATTTT
1 TGTCTTTCATATTTT
7908710 GCATGAATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.10, G:0.06, T:0.71
Consensus pattern (16 bp):
TGTCTTTCATATTTTT
Found at i:7909835 original size:20 final size:20
Alignment explanation
Indices: 7909810--7909847 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7909800 GAAAAATTAC
7909810 TTTT-GGAAAATCTAATTGAT
1 TTTTGGGAAAAT-TAATTGAT
7909830 TTTTGGGAAAATTAATTG
1 TTTTGGGAAAATTAATTG
7909848 TCAAGTCAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.34, C:0.03, G:0.18, T:0.45
Consensus pattern (20 bp):
TTTTGGGAAAATTAATTGAT
Found at i:7910278 original size:16 final size:16
Alignment explanation
Indices: 7910213--7910281 Score: 61
Period size: 16 Copynumber: 4.2 Consensus size: 16
7910203 AAAAAAATAT
*
7910213 TATTTTAATAGATTTAA
1 TATTTTATTA-ATTTAA
*
7910230 TATTTAATTTAATTTAA
1 TATTTTA-TTAATTTAA
* *
7910247 TA-CTTATCTAA-ATAA
1 TATTTTAT-TAATTTAA
7910262 TATTTTATTAATTTAA
1 TATTTTATTAATTTAA
7910278 TATT
1 TATT
7910282 AAGTGATTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
15 9 0.22
16 16 0.39
17 14 0.34
18 2 0.05
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (16 bp):
TATTTTATTAATTTAA
Found at i:7910952 original size:20 final size:20
Alignment explanation
Indices: 7910927--7910964 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7910917 GAAAAATTAC
7910927 TTTT-GGAAAATCTAATTGAT
1 TTTTGGGAAAAT-TAATTGAT
7910947 TTTTGGGAAAATTAATTG
1 TTTTGGGAAAATTAATTG
7910965 TCAAGTCAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.34, C:0.03, G:0.18, T:0.45
Consensus pattern (20 bp):
TTTTGGGAAAATTAATTGAT
Found at i:7920660 original size:14 final size:14
Alignment explanation
Indices: 7920626--7920671 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
7920616 TACTTAATTA
*
7920626 ATTAAAAAT-CAAT
1 ATTAAAAATGAAAT
*
7920639 -TTATAAATGAAAT
1 ATTAAAAATGAAAT
*
7920652 ATTAAAAATGAATT
1 ATTAAAAATGAAAT
7920666 ATTAAA
1 ATTAAA
7920672 TATAACTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
12 7 0.26
13 3 0.11
14 17 0.63
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (14 bp):
ATTAAAAATGAAAT
Found at i:7927419 original size:50 final size:49
Alignment explanation
Indices: 7927337--7927513 Score: 152
Period size: 50 Copynumber: 3.5 Consensus size: 49
7927327 TTGCTATGTC
*
7927337 TGTAGTACTACGTGCAGGCTACTA--CATGTACCGGAATGATAGGTCGCATG
1 TGTAGTACTATGTGCAGGCTACTATGCA--TACCGG-ATGATAGGTCGCATG
* * *
7927387 AGTAGTACTATGTGCAAGCTACTATGCATACC-G--GATAGCTTCGACATGTG
1 TGTAGTACTATGTGCAGGCTACTATGCATACCGGATGATAG-GTCG-CA--TG
* *
7927437 TGTAGTACTATGTGCAGGCTACTACGTGCAT--CGGATGAAAATGGTCACATG
1 TGTAGTACTATGTGCAGGCTACTA--TGCATACCGGATG-ATA-GGTCGCATG
7927488 TGTAGTACTATGTGCAGGCTACTATG
1 TGTAGTACTATGTGCAGGCTACTATG
7927514 TGAACCGGGT
Statistics
Matches: 105, Mismatches: 9, Indels: 27
0.74 0.06 0.19
Matches are distributed among these distances:
46 5 0.05
47 3 0.03
48 2 0.02
49 3 0.03
50 50 0.48
51 27 0.26
52 7 0.07
53 3 0.03
54 4 0.04
55 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
TGTAGTACTATGTGCAGGCTACTATGCATACCGGATGATAGGTCGCATG
Found at i:7927521 original size:101 final size:100
Alignment explanation
Indices: 7927332--7927513 Score: 258
Period size: 100 Copynumber: 1.8 Consensus size: 100
7927322 TGAAGTTGCT
* * *
7927332 ATGTCTGTAGTACTACGTGCAGGCTACTACATGTACCGGAATGATAGGTCGCATGAGTAGTACTA
1 ATGTCTGTAGTACTACGTGCAGGCTACTACATGCACCGGAATGAAAGGTCACATGAGTAGTACTA
7927397 TGTGCAAGCTACTATGCATACCGGATAGCTTCGAC
66 TGTGCAAGCTACTATGCATACCGGATAGCTTCGAC
* * * * *
7927432 ATGTGTGTAGTACTATGTGCAGGCTACTACGTGCATCGG-ATGAAAATGGTCACATGTGTAGTAC
1 ATGTCTGTAGTACTACGTGCAGGCTACTACATGCACCGGAATG-AAA-GGTCACATGAGTAGTAC
*
7927496 TATGTGCAGGCTACTATG
64 TATGTGCAAGCTACTATG
7927514 TGAACCGGGT
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
99 3 0.04
100 36 0.51
101 32 0.45
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
ATGTCTGTAGTACTACGTGCAGGCTACTACATGCACCGGAATGAAAGGTCACATGAGTAGTACTA
TGTGCAAGCTACTATGCATACCGGATAGCTTCGAC
Found at i:7934066 original size:13 final size:13
Alignment explanation
Indices: 7934048--7934073 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7934038 CCAATTTATT
7934048 AATGAATTATTAA
1 AATGAATTATTAA
7934061 AATGAATTATTAA
1 AATGAATTATTAA
7934074 GTATTTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (13 bp):
AATGAATTATTAA
Found at i:7940560 original size:20 final size:20
Alignment explanation
Indices: 7940537--7940584 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
7940527 GGGGCACCGT
7940537 AGTGCAAAAAAGGACACCAA
1 AGTGCAAAAAAGGACACCAA
* * * * *
7940557 AGTGTATATAGGGGCACCAA
1 AGTGCAAAAAAGGACACCAA
7940577 AGTGCAAA
1 AGTGCAAA
7940585 TCTCGTACAA
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.17, G:0.25, T:0.12
Consensus pattern (20 bp):
AGTGCAAAAAAGGACACCAA
Found at i:7945494 original size:47 final size:47
Alignment explanation
Indices: 7945393--7945503 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
7945383 TATGCAAATT
* * *
7945393 TTGGTGGCTTGACCACAACTATGTGTATTGGCAGCTTGTCTGCGATT
1 TTGGTGGCTTGTCCACAACTATGCGTATTGGCAGCTTGTCTGCGATA
* *
7945440 TTAGTGGCTTGTCCACACCTATGCGTATTGGCAGCTTGTCTGCAGA-A
1 TTGGTGGCTTGTCCACAACTATGCGTATTGGCAGCTTGTCTGC-GATA
7945487 TTGGTGGCTTGTCCACA
1 TTGGTGGCTTGTCCACA
7945504 TATATGCTGG
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
47 55 0.96
48 2 0.04
ACGTcount: A:0.17, C:0.22, G:0.27, T:0.34
Consensus pattern (47 bp):
TTGGTGGCTTGTCCACAACTATGCGTATTGGCAGCTTGTCTGCGATA
Found at i:7953003 original size:15 final size:15
Alignment explanation
Indices: 7952985--7953016 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7952975 CATTTCACTA
7952985 TTATGTATTTTATAT
1 TTATGTATTTTATAT
*
7953000 TTATGTCTTTTATAT
1 TTATGTATTTTATAT
7953015 TT
1 TT
7953017 TTCTTGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.03, G:0.06, T:0.69
Consensus pattern (15 bp):
TTATGTATTTTATAT
Found at i:7957053 original size:38 final size:38
Alignment explanation
Indices: 7957010--7957083 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
7957000 CCAGTGCAAT
7957010 GCAACATACCATGGATGATATGCTATTATGCAATTTAA
1 GCAACATACCATGGATGATATGCTATTATGCAATTTAA
7957048 GCAACATACCATGGATGATATGCTATTATGCAATTT
1 GCAACATACCATGGATGATATGCTATTATGCAATTT
7957084 CAGTACATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (38 bp):
GCAACATACCATGGATGATATGCTATTATGCAATTTAA
Found at i:7964457 original size:23 final size:23
Alignment explanation
Indices: 7964431--7964478 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
7964421 GTTAATAAAA
7964431 TTAAAACATAAGTCATCATCTTC
1 TTAAAACATAAGTCATCATCTTC
7964454 TTAAAACATAAGTCATCATCTTC
1 TTAAAACATAAGTCATCATCTTC
7964477 TT
1 TT
7964479 TAACACTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.21, G:0.04, T:0.38
Consensus pattern (23 bp):
TTAAAACATAAGTCATCATCTTC
Found at i:7965002 original size:25 final size:25
Alignment explanation
Indices: 7964949--7965040 Score: 105
Period size: 25 Copynumber: 3.6 Consensus size: 25
7964939 TGACCCACAA
*
7964949 CTCGTGTGAGCA-AGCCCAATTTCATAG
1 CTCGTGTGAGCATA--CCAATTT-ACAG
*
7964976 CTCGTGAGAGCATACCAATTTACAG
1 CTCGTGTGAGCATACCAATTTACAG
* * *
7965001 CTCATGTGAGCATACCGATTCACAG
1 CTCGTGTGAGCATACCAATTTACAG
7965026 CTCGTGTGAGCATAC
1 CTCGTGTGAGCATAC
7965041 ATGTACATGA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
25 38 0.67
26 7 0.12
27 11 0.19
28 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (25 bp):
CTCGTGTGAGCATACCAATTTACAG
Found at i:7966149 original size:20 final size:20
Alignment explanation
Indices: 7966116--7966154 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7966106 GCAACATGGT
*
7966116 TTGGCTTGTGTTATGGTATC
1 TTGGCTTGTGTTATAGTATC
7966136 TTGG-TTGTGATTATAGTAT
1 TTGGCTTGTG-TTATAGTAT
7966155 TTTGAATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.15, C:0.05, G:0.28, T:0.51
Consensus pattern (20 bp):
TTGGCTTGTGTTATAGTATC
Found at i:7967418 original size:75 final size:75
Alignment explanation
Indices: 7967289--7967432 Score: 234
Period size: 75 Copynumber: 1.9 Consensus size: 75
7967279 AAGAAAAACC
**
7967289 AGGATTATTCCCTTATTAATAGAGAAGACAAATGGAAAGTTAGAAAAATTAATTATATTCATTCC
1 AGGATTATTCCCTTATTAATAGAGAAGACAAATGGAAAGTTAGAAAAAGGAATTATATTCATTCC
7967354 AAAAGGATAT
66 AAAAGGATAT
* ** *
7967364 AGGATTATTCCCTTATTAATAGATAAGGTAAATGGAAAGTTAGAAAAAGGAATTATATTCTTTCC
1 AGGATTATTCCCTTATTAATAGAGAAGACAAATGGAAAGTTAGAAAAAGGAATTATATTCATTCC
7967429 AAAA
66 AAAA
7967433 TAATATTAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 63 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.31
Consensus pattern (75 bp):
AGGATTATTCCCTTATTAATAGAGAAGACAAATGGAAAGTTAGAAAAAGGAATTATATTCATTCC
AAAAGGATAT
Found at i:7967540 original size:17 final size:17
Alignment explanation
Indices: 7967507--7967541 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7967497 GGGTTTAGGG
7967507 TTTTAATTAATATAATT
1 TTTTAATTAATATAATT
7967524 TTTTATATTAATA-AATT
1 TTTTA-ATTAATATAATT
7967541 T
1 T
7967542 GGTAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTAATTAATATAATT
Found at i:7967697 original size:44 final size:44
Alignment explanation
Indices: 7967630--7967718 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 44
7967620 ACAAGTTTGT
7967630 ACATATAATGTGTTTAATGTTTAACCATCAAATTAAAT-TAATTC
1 ACATATAATGTGTTTAATGTTTAACCATCAAATT-AATGTAATTC
* *
7967674 ACATATAATGTGTTTAATTTTTAACTATCAAATTAATGTAATTC
1 ACATATAATGTGTTTAATGTTTAACCATCAAATTAATGTAATTC
7967718 A
1 A
7967719 ATAATTAATT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 3 0.07
44 39 0.93
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (44 bp):
ACATATAATGTGTTTAATGTTTAACCATCAAATTAATGTAATTC
Found at i:7977411 original size:8 final size:9
Alignment explanation
Indices: 7977395--7977445 Score: 52
Period size: 9 Copynumber: 5.9 Consensus size: 9
7977385 CCTCCCTTTT
7977395 ATATTAATA
1 ATATTAATA
7977404 AT-TTAATA
1 ATATTAATA
*
7977412 ATA-AAATA
1 ATATTAATA
* *
7977420 ATACTAAAA
1 ATATTAATA
*
7977429 ATCTTAATA
1 ATATTAATA
7977438 ATATTAAT
1 ATATTAAT
7977446 TAAATAACAT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
8 15 0.45
9 18 0.55
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (9 bp):
ATATTAATA
Found at i:7990907 original size:22 final size:21
Alignment explanation
Indices: 7990870--7990916 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
7990860 GGTGTTTCAG
*
7990870 TGGTGGTGCAAGGTGGT-GATA
1 TGGTAGTGCAAGGTGGTCG-TA
7990891 TGGTAGTGCTAAGGTGGTCGTA
1 TGGTAGTGC-AAGGTGGTCGTA
7990913 TGGT
1 TGGT
7990917 GGTTCGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 8 0.35
22 14 0.61
23 1 0.04
ACGTcount: A:0.17, C:0.06, G:0.45, T:0.32
Consensus pattern (21 bp):
TGGTAGTGCAAGGTGGTCGTA
Found at i:7992031 original size:28 final size:27
Alignment explanation
Indices: 7992013--7992114 Score: 107
Period size: 28 Copynumber: 3.7 Consensus size: 27
7992003 TCAAAGTTTG
7992013 CCACAAAGGCTATTTTTTTAAGAGTTCA
1 CCACAAAGGCTATTTTTTTAA-AGTTCA
* * *
7992041 CCATACAA-GTTATTCTTTTTAGAGTTCA
1 CCACA-AAGGCTATT-TTTTTAAAGTTCA
* * *
7992069 CCACAAAGGCTATTCTTTTCATAGTTCG
1 CCACAAAGGCTATT-TTTTTAAAGTTCA
7992097 CCACAAAGGCTATTTTTT
1 CCACAAAGGCTATTTTTT
7992115 AATGTCGTGT
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
27 6 0.10
28 49 0.78
29 8 0.13
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (27 bp):
CCACAAAGGCTATTTTTTTAAAGTTCA
Found at i:8004184 original size:20 final size:20
Alignment explanation
Indices: 8004161--8004211 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
8004151 TTTTGCGACA
8004161 TTTATAATTTTTTAAT-CATT
1 TTTATAATTTTTT-ATGCATT
* *
8004181 TTTAGT-ACTTTTTATGCTTT
1 TTTA-TAATTTTTTATGCATT
8004201 TTTATAATTTT
1 TTTATAATTTT
8004212 AAATAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
19 3 0.12
20 21 0.84
21 1 0.04
ACGTcount: A:0.24, C:0.06, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTATAATTTTTTATGCATT
Found at i:8004305 original size:19 final size:18
Alignment explanation
Indices: 8004251--8004299 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
8004241 TAGTAATTTT
*
8004251 TATAATTTGTCTATATTT-C
1 TATAATTT-TATA-ATTTAC
8004270 TATAATTTTATAATTTAC
1 TATAATTTTATAATTTAC
8004288 TATAAGTTTTAT
1 TATAA-TTTTAT
8004300 TTTTTAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 4 0.15
18 9 0.33
19 14 0.52
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (18 bp):
TATAATTTTATAATTTAC
Found at i:8006210 original size:48 final size:48
Alignment explanation
Indices: 8006157--8006306 Score: 141
Period size: 48 Copynumber: 3.2 Consensus size: 48
8006147 TTTGTTAAAG
8006157 TAGGGTTATGGTTAGGTTTGCTTTTGGTTGGAAGCGTTTTCTTTTTAC
1 TAGGGTTATGGTTAGGTTTGCTTTTGGTTGGAAGCGTTTTCTTTTTAC
* * * ** * * ** *
8006205 TAGGGTTAT-TTTA-TTTTAGGGTTAGGGTT--TAG-ATTTT-TGTTAAAG
1 TAGGGTTATGGTTAGGTTT--GCTTTTGGTTGGAAGCGTTTTCT-TTTTAC
8006250 TAGGGTTATGGTTAGGTTTGCTTTTGGTTGGAAGCGTTTTCTTTTTAC
1 TAGGGTTATGGTTAGGTTTGCTTTTGGTTGGAAGCGTTTTCTTTTTAC
8006298 TAGGGTTAT
1 TAGGGTTAT
8006307 TTTATTTTAG
Statistics
Matches: 73, Mismatches: 20, Indels: 18
0.66 0.18 0.16
Matches are distributed among these distances:
44 1 0.01
45 23 0.32
46 8 0.11
47 8 0.11
48 32 0.44
49 1 0.01
ACGTcount: A:0.16, C:0.05, G:0.29, T:0.50
Consensus pattern (48 bp):
TAGGGTTATGGTTAGGTTTGCTTTTGGTTGGAAGCGTTTTCTTTTTAC
Found at i:8006242 original size:93 final size:93
Alignment explanation
Indices: 8006083--8006361 Score: 558
Period size: 93 Copynumber: 3.0 Consensus size: 93
8006073 CATTGAAAAC
8006083 GCTTTTGGTTGGAAGCGTTTTCTTTTTACTAGGGTTATTTTATTTTAGGGTTAGGGTTTAGATTT
1 GCTTTTGGTTGGAAGCGTTTTCTTTTTACTAGGGTTATTTTATTTTAGGGTTAGGGTTTAGATTT
8006148 TTGTTAAAGTAGGGTTATGGTTAGGTTT
66 TTGTTAAAGTAGGGTTATGGTTAGGTTT
8006176 GCTTTTGGTTGGAAGCGTTTTCTTTTTACTAGGGTTATTTTATTTTAGGGTTAGGGTTTAGATTT
1 GCTTTTGGTTGGAAGCGTTTTCTTTTTACTAGGGTTATTTTATTTTAGGGTTAGGGTTTAGATTT
8006241 TTGTTAAAGTAGGGTTATGGTTAGGTTT
66 TTGTTAAAGTAGGGTTATGGTTAGGTTT
8006269 GCTTTTGGTTGGAAGCGTTTTCTTTTTACTAGGGTTATTTTATTTTAGGGTTAGGGTTTAGATTT
1 GCTTTTGGTTGGAAGCGTTTTCTTTTTACTAGGGTTATTTTATTTTAGGGTTAGGGTTTAGATTT
8006334 TTGTTAAAGTAGGGTTATGGTTAGGTTT
66 TTGTTAAAGTAGGGTTATGGTTAGGTTT
8006362 TGTATGTTTT
Statistics
Matches: 186, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 186 1.00
ACGTcount: A:0.17, C:0.04, G:0.28, T:0.51
Consensus pattern (93 bp):
GCTTTTGGTTGGAAGCGTTTTCTTTTTACTAGGGTTATTTTATTTTAGGGTTAGGGTTTAGATTT
TTGTTAAAGTAGGGTTATGGTTAGGTTT
Found at i:8012234 original size:15 final size:14
Alignment explanation
Indices: 8012214--8012267 Score: 60
Period size: 13 Copynumber: 4.0 Consensus size: 14
8012204 ACTAGCTCTC
8012214 TTTTTTTTTCACAA
1 TTTTTTTTTCACAA
*
8012228 -TTTTTTTTCA-AT
1 TTTTTTTTTCACAA
*
8012240 TTTTTTTTGTTA-AA
1 TTTTTTTT-TCACAA
8012254 TTTTTTTTTCACAA
1 TTTTTTTTTCACAA
8012268 CTTGATATCC
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 1 0.03
13 19 0.58
14 13 0.39
ACGTcount: A:0.20, C:0.09, G:0.02, T:0.69
Consensus pattern (14 bp):
TTTTTTTTTCACAA
Found at i:8012353 original size:12 final size:12
Alignment explanation
Indices: 8012307--8012353 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
8012297 GAAACTAGTT
8012307 TTTTTTTTCGA-
1 TTTTTTTTCGAG
* *
8012318 TTTTTTTTTGAA
1 TTTTTTTTCGAG
8012330 TTTTTTTTCGAG
1 TTTTTTTTCGAG
8012342 TTTTTTTTCGAG
1 TTTTTTTTCGAG
8012354 AAACTACTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
11 10 0.31
12 22 0.69
ACGTcount: A:0.11, C:0.06, G:0.13, T:0.70
Consensus pattern (12 bp):
TTTTTTTTCGAG
Found at i:8018435 original size:3 final size:3
Alignment explanation
Indices: 8018427--8018467 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
8018417 GTTAATTCCC
8018427 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8018468 CTGTTTGGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8020121 original size:43 final size:42
Alignment explanation
Indices: 8020073--8020227 Score: 202
Period size: 43 Copynumber: 3.6 Consensus size: 42
8020063 TTCCAATATT
* *
8020073 GATTTGAGATTTCGTGTAAGACCATAGCTGAGCTATTAGCACC
1 GATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATT-GCATC
*
8020116 GATTTGAGATTTCGTGTAAGATCATAGCTGGGCTATTGACATC
1 GATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTG-CATC
* *
8020159 GATTTGAGGTTTCGTGTAAGACCATAGTTGGGCTATTGGCATC
1 GATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATT-GCATC
** *
8020202 GATACGAGATTTCCATGTAAGACCAT
1 GATTTGAGATTT-CGTGTAAGACCAT
8020228 GTCTGGGACA
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
42 1 0.01
43 85 0.86
44 13 0.13
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (42 bp):
GATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGCATC
Found at i:8021216 original size:45 final size:45
Alignment explanation
Indices: 8021166--8021256 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
8021156 TTATTGGATA
8021166 AACCAAAAATTATAAAAATTTTATGGTAAGAAGATATGTGAGTCT
1 AACCAAAAATTATAAAAATTTTATGGTAAGAAGATATGTGAGTCT
8021211 AACCAAAAATTATAAAAATTTTATGGTAAGAAGATATGTGAGTCT
1 AACCAAAAATTATAAAAATTTTATGGTAAGAAGATATGTGAGTCT
8021256 A
1 A
8021257 GTTTTTTAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.31
Consensus pattern (45 bp):
AACCAAAAATTATAAAAATTTTATGGTAAGAAGATATGTGAGTCT
Found at i:8021662 original size:13 final size:13
Alignment explanation
Indices: 8021644--8021679 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
8021634 ATGAGTTATT
8021644 ATGTTTTGGCCAA
1 ATGTTTTGGCCAA
8021657 ATGTTTTGGCCAA
1 ATGTTTTGGCCAA
8021670 ATGTTTTGGC
1 ATGTTTTGGC
8021680 TTGTAATGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.19, C:0.14, G:0.25, T:0.42
Consensus pattern (13 bp):
ATGTTTTGGCCAA
Found at i:8022719 original size:23 final size:24
Alignment explanation
Indices: 8022692--8022742 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
8022682 CATTTTGAAT
8022692 AATTT-TCCATAATTTTATAAAAA
1 AATTTATCCATAATTTTATAAAAA
* * * *
8022715 AATTTATCCTTTATTTTTTAAAAT
1 AATTTATCCATAATTTTATAAAAA
8022739 AATT
1 AATT
8022743 ATTTGTTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (24 bp):
AATTTATCCATAATTTTATAAAAA
Found at i:8026086 original size:353 final size:353
Alignment explanation
Indices: 8025440--8026138 Score: 1344
Period size: 353 Copynumber: 2.0 Consensus size: 353
8025430 AAAATGTCAG
*
8025440 TAAGTTCTTTAGGACTATGAAAAGAAAAAGGAGTCCACCAAGAGCTATCTAGATGTGAAGTATTC
1 TAAGTTCTTCAGGACTATGAAAAGAAAAAGGAGTCCACCAAGAGCTATCTAGATGTGAAGTATTC
* *
8025505 TCCAAGGTGGACATAATCAGAAAGGCCTTTAGGAAGGTAGGTCAGAGGACCACTTTATAAGTAAA
66 TCCAAGGTGGACATAATCAGAAAGGCCCTTAGGAAGGTAGGTCAAAGGACCACTTTATAAGTAAA
8025570 TGGTGGGAACAAGAAATCCAGCTTGGAGTAGGGATGAAAGAAAGGATGTTAGTAAAGGAATGGTA
131 TGGTGGGAACAAGAAATCCAGCTTGGAGTAGGGATGAAAGAAAGGATGTTAGTAAAGGAATGGTA
8025635 GAGTTCGCAAGTATGAGGAGTTAAATTGAAAGAGACCATAAGCTAATGGTATCTACTAAAAAAAT
196 GAGTTCGCAAGTATGAGGAGTTAAATTGAAAGAGACCATAAGCTAATGGTATCTACTAAAAAAAT
*
8025700 AAGGAAAAGATAGTAACTAAAATTGGATAGGGTGGAGAACCAAGTCTGGTTCGGTTGGATTAGAA
261 AAGGAAAAAATAGTAACTAAAATTGGATAGGGTGGAGAACCAAGTCTGGTTCGGTTGGATTAGAA
8025765 CCAATCGATCCCTTAGTAGGGGACAAAA
326 CCAATCGATCCCTTAGTAGGGGACAAAA
8025793 TAAGTTCTTCAGGACTATGAAAAGAAAAAGGAGTCCACCAAGAGCTATCTAGATGTGAAGTATTC
1 TAAGTTCTTCAGGACTATGAAAAGAAAAAGGAGTCCACCAAGAGCTATCTAGATGTGAAGTATTC
*
8025858 TCCAAGGTGGACATAATCAGAAAGGCCCTTAGGAGGGTAGGTCAAAGGACCACTTTATAAGTAAA
66 TCCAAGGTGGACATAATCAGAAAGGCCCTTAGGAAGGTAGGTCAAAGGACCACTTTATAAGTAAA
8025923 TGGTGGGAACAAGAAATCCAGCTTGGAGTAGGGATGAAAGAAAGGATGTTAGTAAAGGAATGGTA
131 TGGTGGGAACAAGAAATCCAGCTTGGAGTAGGGATGAAAGAAAGGATGTTAGTAAAGGAATGGTA
*
8025988 GAGTTTGCAAGTATGAGGAGTTAAATTGAAAGAGACCATAAGCTAATGGTATCTACTAAAAAAAT
196 GAGTTCGCAAGTATGAGGAGTTAAATTGAAAGAGACCATAAGCTAATGGTATCTACTAAAAAAAT
8026053 AAGGAAAAAATAGTAACTAAAATTGGATAGGGTGGAGAACCAAGTCTGGTTCGGTTGGATTAGAA
261 AAGGAAAAAATAGTAACTAAAATTGGATAGGGTGGAGAACCAAGTCTGGTTCGGTTGGATTAGAA
8026118 CCAATCGATCCCTTAGTAGGG
326 CCAATCGATCCCTTAGTAGGG
8026139 AACTCAAACC
Statistics
Matches: 340, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
353 340 1.00
ACGTcount: A:0.39, C:0.12, G:0.27, T:0.23
Consensus pattern (353 bp):
TAAGTTCTTCAGGACTATGAAAAGAAAAAGGAGTCCACCAAGAGCTATCTAGATGTGAAGTATTC
TCCAAGGTGGACATAATCAGAAAGGCCCTTAGGAAGGTAGGTCAAAGGACCACTTTATAAGTAAA
TGGTGGGAACAAGAAATCCAGCTTGGAGTAGGGATGAAAGAAAGGATGTTAGTAAAGGAATGGTA
GAGTTCGCAAGTATGAGGAGTTAAATTGAAAGAGACCATAAGCTAATGGTATCTACTAAAAAAAT
AAGGAAAAAATAGTAACTAAAATTGGATAGGGTGGAGAACCAAGTCTGGTTCGGTTGGATTAGAA
CCAATCGATCCCTTAGTAGGGGACAAAA
Found at i:8030501 original size:19 final size:19
Alignment explanation
Indices: 8030477--8030515 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8030467 TTTTTAAAAA
8030477 TATAAA-AATTTGAAATTTT
1 TATAAACAATTTG-AATTTT
*
8030496 TATAAACATTTTGAATTTT
1 TATAAACAATTTGAATTTT
8030515 T
1 T
8030516 GAAAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TATAAACAATTTGAATTTT
Found at i:8030743 original size:117 final size:118
Alignment explanation
Indices: 8030529--8030745 Score: 296
Period size: 117 Copynumber: 1.8 Consensus size: 118
8030519 AATTATTTTG
* * * * * *
8030529 AATTATTTTGTAATCTTTGTTGAGAGAGAGATCAATTTGCTTATTTTCAAAGTTGATGGGACTAA
1 AATTATTTTGTAATCTTTGTTGAAAGAAAAATCAATTTGCTCATTTTCAAAATTGATAGGACTAA
*
8030594 AAGGGTATTTACACCAATATGTTATTCGAATTATTCAAGTTATCTCGACTCGA
66 AAGGGTATTTACACCAATATGTTATTCAAATTATTCAAGTTATCTCGACTCGA
*
8030647 AATTTTTTTGTAAT-TTT-TTGAAAGAAAAATCAATTTGCTCATTTTCAAAATTGATAAGGA-TC
1 AATTATTTTGTAATCTTTGTTGAAAGAAAAATCAATTTGCTCATTTTCAAAATTGAT-AGGACT-
* * *
8030709 AAAAGGGTATTTACGCTAATCTGTTATTCAAATTATT
64 AAAAGGGTATTTACACCAATATGTTATTCAAATTATT
8030746 TGAATTATTT
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
116 34 0.40
117 39 0.45
118 13 0.15
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.41
Consensus pattern (118 bp):
AATTATTTTGTAATCTTTGTTGAAAGAAAAATCAATTTGCTCATTTTCAAAATTGATAGGACTAA
AAGGGTATTTACACCAATATGTTATTCAAATTATTCAAGTTATCTCGACTCGA
Found at i:8046885 original size:27 final size:26
Alignment explanation
Indices: 8046832--8046889 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
8046822 TTCGTGACAT
* *
8046832 GCAATGTTAGTGTCGCAACATGATGA
1 GCAATGTTAGTGTCACAACAAGATGA
8046858 GGCAATGTTAGTGTCACAACACAG-TGA
1 -GCAATGTTAGTGTCACAACA-AGATGA
8046885 GCAAT
1 GCAAT
8046890 TTTTGACTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 5 0.18
27 22 0.79
28 1 0.04
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (26 bp):
GCAATGTTAGTGTCACAACAAGATGA
Found at i:8054113 original size:12 final size:12
Alignment explanation
Indices: 8054096--8054125 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8054086 TTAGGCTATT
8054096 ACACGGCCTAAC
1 ACACGGCCTAAC
*
8054108 ACACGGCCTGAC
1 ACACGGCCTAAC
8054120 ACACGG
1 ACACGG
8054126 GCGTGTAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.40, G:0.23, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAAC
Found at i:8054459 original size:5 final size:5
Alignment explanation
Indices: 8054449--8054474 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8054439 ATAATATGAA
8054449 TGGTT TGGTT TGGTT TGGTT TGGTT T
1 TGGTT TGGTT TGGTT TGGTT TGGTT T
8054475 TCATATGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.38, T:0.62
Consensus pattern (5 bp):
TGGTT
Found at i:8069834 original size:27 final size:27
Alignment explanation
Indices: 8069516--8069827 Score: 383
Period size: 27 Copynumber: 11.6 Consensus size: 27
8069506 ATTATTTTAT
* *
8069516 CCTACGGGGGTATTTTGGTCACTT-TAC
1 CCTATGGGGGTATTTCGGTCA-TTCTAC
8069543 CCTATGGGGGTATTTCGGTCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
* *
8069570 CTTATGGGTGTATTTCGGTCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
*
8069597 CCTATGGGGGTATTTCGGTCATTTTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
*
8069624 CCTATGGGGGTATTTTGGTCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
8069651 CCTATGGGGGTATTTCGGTCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
* **
8069678 CCTATAGAAGTATTTCGGTCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
* ***
8069705 CTTATGAAAGTATTTCGGTCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
* * * * *
8069732 CTTATGAGGCTGTTTCGGTCATTCTAT
1 CCTATGGGGGTATTTCGGTCATTCTAC
* * *
8069759 CCTATGAGGGTATTTTGGTCATTTTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
* **
8069786 CTTATGGGGGTCCTTCGGTCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
*
8069813 CCTGTGGGGGTATTT
1 CCTATGGGGGTATTT
8069828 TAGTCATAAC
Statistics
Matches: 247, Mismatches: 37, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 2 0.01
27 245 0.99
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.40
Consensus pattern (27 bp):
CCTATGGGGGTATTTCGGTCATTCTAC
Found at i:8073117 original size:27 final size:27
Alignment explanation
Indices: 8073079--8073151 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
8073069 ACACGATAGC
*
8073079 AATGAATAGCCTTTGTGGCGTACTCTG
1 AATGAATAGCCTTTGTGGCGTACTATG
* *
8073106 AATGAATAGCCTTTATGGCGTTCTATG
1 AATGAATAGCCTTTGTGGCGTACTATG
*
8073133 AATGAATAACCTTTGTGGC
1 AATGAATAGCCTTTGTGGC
8073152 ATATTTTGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.34
Consensus pattern (27 bp):
AATGAATAGCCTTTGTGGCGTACTATG
Found at i:8073331 original size:14 final size:14
Alignment explanation
Indices: 8073312--8073339 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8073302 GAATTTCTAG
8073312 TAAGTGTTAAATCT
1 TAAGTGTTAAATCT
8073326 TAAGTGTTAAATCT
1 TAAGTGTTAAATCT
8073340 AAAAGTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (14 bp):
TAAGTGTTAAATCT
Found at i:8087549 original size:27 final size:27
Alignment explanation
Indices: 8087511--8087564 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
8087501 ATATTGCTTG
*
8087511 AACAATCATGAATCAAACACAGAACAA
1 AACAATCATGAATCAAAAACAGAACAA
*
8087538 AACAATCATGAATCAAAAATAGAACAA
1 AACAATCATGAATCAAAAACAGAACAA
8087565 GAAACAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.61, C:0.19, G:0.07, T:0.13
Consensus pattern (27 bp):
AACAATCATGAATCAAAAACAGAACAA
Found at i:8089707 original size:20 final size:22
Alignment explanation
Indices: 8089669--8089708 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
8089659 AATAATAAAC
*
8089669 AAATATAATTATTTCTTGATTG
1 AAATATAATTATATCTTGATTG
8089691 AAATA-AATTATAT-TTGAT
1 AAATATAATTATATCTTGAT
8089709 ACCAACATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 7 0.41
22 5 0.29
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.47
Consensus pattern (22 bp):
AAATATAATTATATCTTGATTG
Found at i:8096836 original size:18 final size:18
Alignment explanation
Indices: 8096815--8096857 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
8096805 ACCCAATCCA
* *
8096815 AACCCTAGTATTCAACCC
1 AACCCAAGTACTCAACCC
*
8096833 AACCCAATTACTCAACCC
1 AACCCAAGTACTCAACCC
8096851 AACCCAA
1 AACCCAA
8096858 TCATAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.42, G:0.02, T:0.16
Consensus pattern (18 bp):
AACCCAAGTACTCAACCC
Found at i:8096979 original size:9 final size:9
Alignment explanation
Indices: 8096965--8097027 Score: 90
Period size: 9 Copynumber: 7.0 Consensus size: 9
8096955 TGATTCAATC
8096965 CGGTTAATT
1 CGGTTAATT
8096974 CGGTTAATT
1 CGGTTAATT
*
8096983 CGGGTAATT
1 CGGTTAATT
8096992 CGGTTAATT
1 CGGTTAATT
* * *
8097001 TGGGTAATC
1 CGGTTAATT
8097010 CGGTTAATT
1 CGGTTAATT
8097019 CGGTTAATT
1 CGGTTAATT
8097028 TTTAACCAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.22, C:0.11, G:0.25, T:0.41
Consensus pattern (9 bp):
CGGTTAATT
Found at i:8097490 original size:37 final size:38
Alignment explanation
Indices: 8097416--8097491 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
8097406 CCACCAAATT
* *
8097416 TTTTTTTCCCTTATATGAAATAATGGGTGACCTCCAAA
1 TTTTTTTCCCTTATATGAAATAACGGGTGACCGCCAAA
8097454 TTTTTTTCCCTTATATGAAATAACGGGTGA-CGCCAAA
1 TTTTTTTCCCTTATATGAAATAACGGGTGACCGCCAAA
8097491 T
1 T
8097492 ACATTGGTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 7 0.19
38 29 0.81
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (38 bp):
TTTTTTTCCCTTATATGAAATAACGGGTGACCGCCAAA
Found at i:8099560 original size:132 final size:132
Alignment explanation
Indices: 8099323--8099720 Score: 706
Period size: 132 Copynumber: 3.0 Consensus size: 132
8099313 AAAGAATTAG
*
8099323 ACCACAATTTGACAAAGACTAGTAAAGGTTGGGTTTGGGCAATGGGCCCAATTTTTGATATTTTA
1 ACCACAATTTGACAAAGACTTGTAAAGGTTGGGTTTGGGCAATGGGCCCAATTTTTGATATTTTA
*
8099388 ATAGGGGTAAAGAGCCTGTATTGACCCCATTTTCTCCCATTACCAGTCGACTATTGAACTGCGAA
66 ATAGGGGTAAAGAGCCTGTATCGACCCCATTTTCTCCCATTACCAGTCGACTATTGAACTGCGAA
8099453 GA
131 GA
8099455 ACCACAATTTGACAAAGACTTGTAAAGGTTGGGTTTGGGCAATGGGCCCAATTTTTGATATTTTA
1 ACCACAATTTGACAAAGACTTGTAAAGGTTGGGTTTGGGCAATGGGCCCAATTTTTGATATTTTA
* *
8099520 ATAGGGGTAAAGAGCCCGTATCGACCCCATTTTCTCCCATTACCAGTTGACTATTGAACTGCGAA
66 ATAGGGGTAAAGAGCCTGTATCGACCCCATTTTCTCCCATTACCAGTCGACTATTGAACTGCGAA
8099585 GA
131 GA
* * * *
8099587 ATCATAATTTGACAAAGACTTGTAAAGGTTGGGTTTGCGCAATGGGCCCAATTTTTGATCTTTTA
1 ACCACAATTTGACAAAGACTTGTAAAGGTTGGGTTTGGGCAATGGGCCCAATTTTTGATATTTTA
* *
8099652 ATAGGGGTAAAGAGCCTGTATCGACTCCATTTTCTCCCATTACCAGTCGATTATTGAACTGCGAA
66 ATAGGGGTAAAGAGCCTGTATCGACCCCATTTTCTCCCATTACCAGTCGACTATTGAACTGCGAA
8099717 GA
131 GA
8099719 AC
1 AC
8099721 TTTCTCCATT
Statistics
Matches: 253, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 253 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (132 bp):
ACCACAATTTGACAAAGACTTGTAAAGGTTGGGTTTGGGCAATGGGCCCAATTTTTGATATTTTA
ATAGGGGTAAAGAGCCTGTATCGACCCCATTTTCTCCCATTACCAGTCGACTATTGAACTGCGAA
GA
Found at i:8100438 original size:12 final size:12
Alignment explanation
Indices: 8100421--8100445 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8100411 AGAGTTGTTT
8100421 TATGTTGAAAAA
1 TATGTTGAAAAA
8100433 TATGTTGAAAAA
1 TATGTTGAAAAA
8100445 T
1 T
8100446 GTTAAAGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (12 bp):
TATGTTGAAAAA
Found at i:8101438 original size:18 final size:18
Alignment explanation
Indices: 8101415--8101453 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
8101405 ATGGCCATGT
8101415 CCCAACCCGTGTCCGTGC
1 CCCAACCCGTGTCCGTGC
*
8101433 CCCAACCCGTGTTCGTGC
1 CCCAACCCGTGTCCGTGC
8101451 CCC
1 CCC
8101454 TGTAACTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.10, C:0.51, G:0.21, T:0.18
Consensus pattern (18 bp):
CCCAACCCGTGTCCGTGC
Found at i:8106655 original size:50 final size:50
Alignment explanation
Indices: 8106484--8106811 Score: 270
Period size: 50 Copynumber: 6.6 Consensus size: 50
8106474 GGTAAAGAGG
* ** * * **
8106484 TCCCATGTAAGACCATGTTTGGGACATGGCGAT-GGCACTGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGC-ATGGGCACCAATATGAGAAC
* * * * * * * **
8106534 TTCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAC
8106584 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAC
* * * * * *** * *
8106634 TCCCATGTAAGACTATATCTGGGATATGACATTGGC-TGTACAGGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAC
8106682 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAC
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAC
* * * * * *** * *
8106733 TCCCATGTAAGACTATATCTGGGATATGACATTGGC-TGTACAGGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAC
8106781 ATCCCATGTAAGACCATGTCTGGGACATGGC
1 -TCCCATGTAAGACCATGTCTGGGACATGGC
8106812 TTTGGCATGT
Statistics
Matches: 227, Mismatches: 46, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
48 6 0.03
49 66 0.29
50 152 0.67
51 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAC
Found at i:8106713 original size:99 final size:99
Alignment explanation
Indices: 8106584--8106811 Score: 456
Period size: 99 Copynumber: 2.3 Consensus size: 99
8106574 AGATAAGAGG
8106584 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAACTCCCATGTAAGACTA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAACTCCCATGTAAGACTA
8106649 TATCTGGGATATGACATTGGCTGTACAGGAAACA
66 TATCTGGGATATGACATTGGCTGTACAGGAAACA
8106683 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAACTCCCATGTAAGACTA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAACTCCCATGTAAGACTA
8106748 TATCTGGGATATGACATTGGCTGTACAGGAAACA
66 TATCTGGGATATGACATTGGCTGTACAGGAAACA
8106782 TCCCATGTAAGACCATGTCTGGGACATGGC
1 TCCCATGTAAGACCATGTCTGGGACATGGC
8106812 TTTGGCATGT
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 129 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (99 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAACTCCCATGTAAGACTA
TATCTGGGATATGACATTGGCTGTACAGGAAACA
Found at i:8114040 original size:50 final size:50
Alignment explanation
Indices: 8113960--8114089 Score: 152
Period size: 50 Copynumber: 2.6 Consensus size: 50
8113950 AGGTCCCATG
* * * ** *
8113960 TAAGACCATGTCTGGGACAGGGCGTTGGCACCGAGATGAGAGGTCCCCCA
1 TAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAACTCCCACA
* * **
8114010 TAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAACTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAACTCCCACA
* *
8114060 TAAGACCATATCTGGGATATGGCATTGGCA
1 TAAGACCATGTCTGGGACATGGCATTGGCA
8114090 GTACAAGAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAACTCCCACA
Found at i:8121274 original size:9 final size:9
Alignment explanation
Indices: 8121260--8121287 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
8121250 AACTAGGTAT
8121260 CAAAAGTAC
1 CAAAAGTAC
8121269 CAAAAGTAC
1 CAAAAGTAC
8121278 CAAAAGTAC
1 CAAAAGTAC
8121287 C
1 C
8121288 TCAATCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.54, C:0.25, G:0.11, T:0.11
Consensus pattern (9 bp):
CAAAAGTAC
Found at i:8127694 original size:23 final size:23
Alignment explanation
Indices: 8127633--8127694 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 23
8127623 TTTAAGGAGG
*
8127633 TATAATGCTCTCCATTTTAATTGATA
1 TATAATGCTCT-C--TTTAAATGATA
8127659 TA-ACA-GCTC-CTTTAAATGATA
1 TATA-ATGCTCTCTTTAAATGATA
8127680 TATAATGCTCTCTTT
1 TATAATGCTCTCTTT
8127695 GTATGTAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 11
0.72 0.02 0.26
Matches are distributed among these distances:
21 13 0.42
22 5 0.16
23 5 0.16
25 5 0.16
26 3 0.10
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.44
Consensus pattern (23 bp):
TATAATGCTCTCTTTAAATGATA
Found at i:8127824 original size:21 final size:21
Alignment explanation
Indices: 8127794--8127863 Score: 83
Period size: 21 Copynumber: 3.5 Consensus size: 21
8127784 AATCAGACAC
*
8127794 ATTAATCACATTTAAACTCAT
1 ATTAAACACATTTAAACTCAT
* *
8127815 ATTAAACACA---AAACACAC
1 ATTAAACACATTTAAACTCAT
*
8127833 ATTAATCACATTTAAACTCAT
1 ATTAAACACATTTAAACTCAT
8127854 ATTAAACACA
1 ATTAAACACA
8127864 AAACACATTA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
18 15 0.38
21 24 0.62
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (21 bp):
ATTAAACACATTTAAACTCAT
Found at i:8127842 original size:39 final size:39
Alignment explanation
Indices: 8127790--8127870 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
8127780 CTGCAATCAG
8127790 ACACATTAATCACATTTAAACTCATATTAAACACAAAAC
1 ACACATTAATCACATTTAAACTCATATTAAACACAAAAC
8127829 ACACATTAATCACATTTAAACTCATATTAAACACAAAAC
1 ACACATTAATCACATTTAAACTCATATTAAACACAAAAC
8127868 ACA
1 ACA
8127871 TTAAACACTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.25
Consensus pattern (39 bp):
ACACATTAATCACATTTAAACTCATATTAAACACAAAAC
Found at i:8132012 original size:26 final size:26
Alignment explanation
Indices: 8131930--8132019 Score: 67
Period size: 26 Copynumber: 3.4 Consensus size: 26
8131920 TTTTAATTCT
* *
8131930 ATTAATTATGTC-CTATTTCGTACAA
1 ATTAATTATGTCTCAATTTCATACAA
* * * * *
8131955 CATTAATACATGTCTTAAGTT-AGACAT
1 -ATTAAT-TATGTCTCAATTTCATACAA
*
8131982 TTTAATTATGTCTCAATTTCATACAA
1 ATTAATTATGTCTCAATTTCATACAA
8132008 ATTAAATTATGT
1 ATT-AATTATGT
8132020 TTTAGTTTGT
Statistics
Matches: 46, Mismatches: 14, Indels: 7
0.69 0.21 0.10
Matches are distributed among these distances:
25 10 0.22
26 17 0.37
27 16 0.35
28 3 0.07
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.43
Consensus pattern (26 bp):
ATTAATTATGTCTCAATTTCATACAA
Found at i:8136507 original size:24 final size:24
Alignment explanation
Indices: 8136436--8136507 Score: 117
Period size: 24 Copynumber: 3.0 Consensus size: 24
8136426 ACAAGCTGCA
* * *
8136436 CGTTGGGGTCAAGCTACTGAATAA
1 CGTTGTGGTCAAGCCACTGAATAT
8136460 CGTTGTGGTCAAGCCACTGAATAT
1 CGTTGTGGTCAAGCCACTGAATAT
8136484 CGTTGTGGTCAAGCCACTGAATAT
1 CGTTGTGGTCAAGCCACTGAATAT
8136508 TGCAGTAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (24 bp):
CGTTGTGGTCAAGCCACTGAATAT
Found at i:8137173 original size:20 final size:20
Alignment explanation
Indices: 8137148--8137187 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
8137138 CGAAAAATGA
8137148 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
8137168 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
8137188 GAAAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:8143626 original size:40 final size:40
Alignment explanation
Indices: 8143563--8143654 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
8143553 GAAGTGCCCA
* *
8143563 TGTTTGTACTTCGGTACCCTTGAATGCACATCTATG-CCTC
1 TGTTTGTACTTCGATACACTTGAATGCACATCTATGACC-C
* *
8143603 TGTTTGTACTTCGATACATTTGAATGCACATCTGTGACCC
1 TGTTTGTACTTCGATACACTTGAATGCACATCTATGACCC
*
8143643 TATTTGTACTTC
1 TGTTTGTACTTC
8143655 AGTACCCCTG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 44 0.96
41 2 0.04
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (40 bp):
TGTTTGTACTTCGATACACTTGAATGCACATCTATGACCC
Found at i:8143670 original size:40 final size:39
Alignment explanation
Indices: 8143565--8143678 Score: 122
Period size: 40 Copynumber: 2.8 Consensus size: 39
8143555 AGTGCCCATG
* *
8143565 TTTGTACTTCGGTACCCTTGAATGCACATCTATGCCTCTG
1 TTTGTACTTC-GTACCCTTGAATGCACATCTGTGCCTCTA
**
8143605 TTTGTACTTCGATACATTTGAATGCACATCTGTGACC-CTA
1 TTTGTACTTCG-TACCCTTGAATGCACATCTGTG-CCTCTA
* * *
8143645 TTTGTACTTCAGTACCCCTGTATGCACATATGTG
1 TTTGTACTTC-GTACCCTTGAATGCACATCTGTG
8143679 TCCTTGTTTG
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
39 1 0.02
40 58 0.94
41 3 0.05
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.38
Consensus pattern (39 bp):
TTTGTACTTCGTACCCTTGAATGCACATCTGTGCCTCTA
Found at i:8143730 original size:40 final size:40
Alignment explanation
Indices: 8143659--8143753 Score: 93
Period size: 40 Copynumber: 2.4 Consensus size: 40
8143649 TACTTCAGTA
* * * * * *
8143659 CCCCTGTATGCACATATGTGTCCTTGTTTGCAATTCGGTT
1 CCCCTGAATGCACATATGTGCCCCTGGTTGCAATTAGGTG
* * *
8143699 CCCCTGAATGCAGATTTGTGCCCCTGGTTGCACTTAGGTG
1 CCCCTGAATGCACATATGTGCCCCTGGTTGCAATTAGGTG
8143739 CCCCTG-ATCGCACAT
1 CCCCTGAAT-GCACAT
8143754 TCGTGCTTCT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
39 2 0.05
40 42 0.95
ACGTcount: A:0.16, C:0.29, G:0.22, T:0.33
Consensus pattern (40 bp):
CCCCTGAATGCACATATGTGCCCCTGGTTGCAATTAGGTG
Found at i:8143759 original size:20 final size:20
Alignment explanation
Indices: 8143716--8143781 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
8143706 ATGCAGATTT
* * *
8143716 GTGCCCCTGGTTGCACTTAG
1 GTGCCCCTGATCGCACTTCG
8143736 GTGCCCCTGATCGCACATTC-
1 GTGCCCCTGATCGCAC-TTCG
** *
8143756 GTGCTTCTGATTGCACTTCG
1 GTGCCCCTGATCGCACTTCG
8143776 GTGCCC
1 GTGCCC
8143782 TTGTTATGCA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
19 3 0.08
20 31 0.86
21 2 0.06
ACGTcount: A:0.11, C:0.33, G:0.26, T:0.30
Consensus pattern (20 bp):
GTGCCCCTGATCGCACTTCG
Found at i:8158567 original size:28 final size:27
Alignment explanation
Indices: 8158497--8158595 Score: 103
Period size: 27 Copynumber: 3.6 Consensus size: 27
8158487 CATGACAGCT
* *
8158497 AAGAATAGCCTTTGTGCCAAACTCTGA
1 AAGAATAACCTTTGTGGCAAACTCTGA
*
8158524 AAGAATAGA-CTTTGTGGCAAAGTCTGA
1 AAGAATA-ACCTTTGTGGCAAACTCTGA
* *
8158551 AAGAAATAACCTTTGTGGCTAACTCTAA
1 AAG-AATAACCTTTGTGGCAAACTCTGA
*
8158579 AAGGAAT-GCCTTTGTGG
1 AA-GAATAACCTTTGTGG
8158596 AAAATTTTGT
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
27 36 0.59
28 24 0.39
29 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.27
Consensus pattern (27 bp):
AAGAATAACCTTTGTGGCAAACTCTGA
Found at i:8160102 original size:18 final size:18
Alignment explanation
Indices: 8160054--8160093 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
8160044 CTTTCTCTTA
8160054 AACTCACTAAGTTCTTTG
1 AACTCACTAAGTTCTTTG
*
8160072 AACTCACTAAGTTCTTTT
1 AACTCACTAAGTTCTTTG
8160090 AACT
1 AACT
8160094 TACTTAGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (18 bp):
AACTCACTAAGTTCTTTG
Found at i:8161363 original size:21 final size:21
Alignment explanation
Indices: 8161339--8161378 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8161329 TTTGCCTAAG
* *
8161339 ATGTGAATTGGATTGAATTGA
1 ATGTAAATTGGATTCAATTGA
*
8161360 ATGTAAATTGTATTCAATT
1 ATGTAAATTGGATTCAATT
8161379 CATGTTAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.42
Consensus pattern (21 bp):
ATGTAAATTGGATTCAATTGA
Found at i:8163828 original size:21 final size:21
Alignment explanation
Indices: 8163804--8163852 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
8163794 TGAAGACGGT
8163804 CTAGAAAGGGCTGAATTCTAG
1 CTAGAAAGGGCTGAATTCTAG
8163825 CTAGAAAGGGCTGAATTCTAG
1 CTAGAAAGGGCTGAATTCTAG
8163846 CTAGAAA
1 CTAGAAA
8163853 ATACTATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (21 bp):
CTAGAAAGGGCTGAATTCTAG
Found at i:8179332 original size:277 final size:279
Alignment explanation
Indices: 8178838--8179394 Score: 1028
Period size: 277 Copynumber: 2.0 Consensus size: 279
8178828 AAGATAGTGA
*
8178838 GATTAATAAGTTGATTGATGATCTCACCAAATCAGATGATGACAAAGATGAGGTGCCAACCAATT
1 GATTAATAAGCTGATTGATGATCTCACCAAATCAGATGATGACAAAGATGAGGTGCCAACCAATT
* *
8178903 CCTTGAAACAGAAGCAGCGTTACAAGCATGCTACTCGCAAAACTACTTGCCCAAACTGAAGTAAC
66 CCTTGAAACAAAAGCAGCATTACAAGCATGCTACTCGCAAAACTACTTGCCCAAACTGAAGTAAC
* *
8178968 ATCACTTTCTTTGCAAGCTTTCATTTTTAATTTCATTTCATCATGCAATCATAAATGTTGTCTGT
131 ATCACTTTCTTTGCAAGCTTTCATTTTTAATTTCATTTCATCATGCAATCATAAATGTTATCTAT
* *
8179033 ACATTTTCTTTCTATATATGCCTTTG-CAAAAAAAAA-ATATGTCTGTTCATACATTGGGGACAA
196 ACATTTTCTTTCTATATATGCCTTTGTAAAAAAAAAATATATGTCTATTCATACATTGGGGACAA
8179096 TGCATCCCCTAGGTTTGGG
261 TGCATCCCCTAGGTTTGGG
8179115 GATTAATAAGCTGATTGATGATCTCACCAAATCAGATGATGACAAAGATGAGGTGCCAACCAATT
1 GATTAATAAGCTGATTGATGATCTCACCAAATCAGATGATGACAAAGATGAGGTGCCAACCAATT
8179180 CCTTGAAACAAAAGCAGCATTACAAGCATGCTACTCGCAAAACTACTTGCCCAAACTGAAGTAAC
66 CCTTGAAACAAAAGCAGCATTACAAGCATGCTACTCGCAAAACTACTTGCCCAAACTGAAGTAAC
8179245 ATCACTTTCTTTGCAAGCTTTCATTTTTAATTTCATTTCATCATGCAATCATAAATGTTATCTAT
131 ATCACTTTCTTTGCAAGCTTTCATTTTTAATTTCATTTCATCATGCAATCATAAATGTTATCTAT
*
8179310 ACATTTTCTTTCTATATATGCCTTTGTAAAAAAAAAATATATGTCTATTCATGCATTGGGGACAA
196 ACATTTTCTTTCTATATATGCCTTTGTAAAAAAAAAATATATGTCTATTCATACATTGGGGACAA
8179375 TGCATCCCCTAGGTTTGGG
261 TGCATCCCCTAGGTTTGGG
8179394 G
1 G
8179395 TGTGTTGAGC
Statistics
Matches: 270, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
277 216 0.80
278 9 0.03
279 45 0.17
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (279 bp):
GATTAATAAGCTGATTGATGATCTCACCAAATCAGATGATGACAAAGATGAGGTGCCAACCAATT
CCTTGAAACAAAAGCAGCATTACAAGCATGCTACTCGCAAAACTACTTGCCCAAACTGAAGTAAC
ATCACTTTCTTTGCAAGCTTTCATTTTTAATTTCATTTCATCATGCAATCATAAATGTTATCTAT
ACATTTTCTTTCTATATATGCCTTTGTAAAAAAAAAATATATGTCTATTCATACATTGGGGACAA
TGCATCCCCTAGGTTTGGG
Found at i:8182694 original size:20 final size:20
Alignment explanation
Indices: 8182669--8182719 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
8182659 AGCTTATGCT
8182669 AAGTAAATGGAATGGAAAGA
1 AAGTAAATGGAATGGAAAGA
* * *
8182689 AAGTAAATGAAATGTAAAGT
1 AAGTAAATGGAATGGAAAGA
8182709 AAGTAAATGGA
1 AAGTAAATGGA
8182720 GTAGTTCATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.25, T:0.20
Consensus pattern (20 bp):
AAGTAAATGGAATGGAAAGA
Found at i:8182987 original size:17 final size:17
Alignment explanation
Indices: 8182965--8183011 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
8182955 TCAGATTATC
*
8182965 GGAAGCTCGA-CTGGTTT
1 GGAAGCTCGATC-AGTTT
8182982 GGAAGCTCGATCAGTTT
1 GGAAGCTCGATCAGTTT
8182999 GGAAGCTCG-TCAG
1 GGAAGCTCGATCAG
8183012 AGATCTATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 4 0.14
17 23 0.82
18 1 0.04
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.26
Consensus pattern (17 bp):
GGAAGCTCGATCAGTTT
Found at i:8188909 original size:130 final size:131
Alignment explanation
Indices: 8188688--8189076 Score: 473
Period size: 130 Copynumber: 3.0 Consensus size: 131
8188678 CACTGCAACT
* *
8188688 TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGACTCGTCA
1 TCAGGGAGATAAGACTGGTGGCTTAAATCTGCTT-CCTACTACCTCGGGAAGATAAGATTCGTCA
* * * * *
8188753 TCTTTGATCTGC-TCTATTATTTCTTAGGGAGACTGGATATACAAACTTCAACCTACTCCACTAC
65 TC-TTGATCTGCTTCCACTATTGCTTAGGGAGACAGGATATACAATCTTCAACCTACTCCACTAC
8188817 TGC
129 TGC
* * * *
8188820 TCAGGGGGATACGACTGGTGGCTTAAATCTGCTTCCT-CTATCTCGGGAAGATAAGATTTGTCAT
1 TCAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCCTACTACCTCGGGAAGATAAGATTCGTCAT
* * * **
8188884 CTTCGATCT-CTTCCACTACTGCTTAGGAAGACAGGATGTACAATCTTCAACCTACTCCACTGTT
66 CTT-GATCTGCTTCCACTATTGCTTAGGGAGACAGGATATACAATCTTCAACCTACTCCACTACT
8188948 GC
130 GC
* * * * * *
8188950 TCACGGAGATAGGACTGCTGTCTTAAATTTGCTTCCTTACTACCTTGGGAAGATAAGATTCGTCG
1 TCAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCC-TACTACCTCGGGAAGATAAGATTCGTC-
* *
8189015 TATC-TGATCTGCTT-CACAATTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACT
64 -ATCTTGATCTGCTTCCACTATTGCTTAGGGAGACAGGATATACAATCTTCAACCTACTCCACT
8189077 GCAAACTCAG
Statistics
Matches: 221, Mismatches: 29, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
129 3 0.01
130 105 0.48
131 4 0.02
132 102 0.46
133 4 0.02
134 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (131 bp):
TCAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCCTACTACCTCGGGAAGATAAGATTCGTCAT
CTTGATCTGCTTCCACTATTGCTTAGGGAGACAGGATATACAATCTTCAACCTACTCCACTACTG
C
Found at i:8189259 original size:89 final size:87
Alignment explanation
Indices: 8189070--8189346 Score: 367
Period size: 89 Copynumber: 3.1 Consensus size: 87
8189060 CTTCAACCTA
* * * * * *
8189070 CTCCACTGCAAACTCAGAGAGGCAAGGCTGGTGTTTTCGGTCTGCTTCACTACCAGTACGGAAGA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAATAAGGAAGA
*
8189135 CAAGATTTGCTATTTTCAGTCTG
66 CAAGATCTGCTA-TTTCAGTCTG
* * * *
8189158 CTCCACTACAAACTCAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGCCAATATAAGAAG
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAATA-AGGAAG
*
8189223 ATAAGATCTGCTATCTTCAGTCTG
65 ACAAGATCTGCTAT-TTCAGTCTG
* *
8189247 CTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTAC-ATCTGCTTCACTGCTAATACAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTCTT-CGATCTGCTTCACTGCCAATA-AGGAA
8189311 GACAAGATCTGCTATTATCAGTCTG
64 GACAAGATCTGCTATT-TCAGTCTG
8189336 CTCCACTGCAA
1 CTCCACTGCAA
8189347 CTTCAAGGAG
Statistics
Matches: 164, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
88 52 0.32
89 111 0.68
90 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (87 bp):
CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAATAAGGAAGA
CAAGATCTGCTATTTCAGTCTG
Found at i:8189382 original size:44 final size:43
Alignment explanation
Indices: 8189332--8190701 Score: 517
Period size: 44 Copynumber: 30.8 Consensus size: 43
8189322 CTATTATCAG
* *
8189332 TCTGCTCCACTGCAACTTCAAGGAGATAGGATTAGTAGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT-GTAGCTTTAA
*
8189376 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT-GTAGCTTTAA
** * * **
8189420 TCCACTCCACTGCAACTTCAGGGGGATAAGATTGGTATTTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT-GTAGCTTTAA
* * * *
8189464 CCTACTCCACTGCAACTTCAGGGAGATAAGG-TT-T-GATGTAA
1 TCTGCTCCACTGCAACTTCAGGGAGAT-AGGATTGTAGCTTTAA
* * * * *
8189505 TCTGCTCTACTGCAACTTTAGAGAGATAAGGTCTTATGATTTATAGCTTTGA
1 TCTGCTCCACTGCAACTTCAGGGAGAT-A-G------GA-TTGTAGCTTTAA
* ** * * * * * * *
8189557 TATATTCTACTACCATCTTCAGGGAGA-CGAGATTTGCTATCTTCAG
1 TCTGCTCCACT-GCAACTTCAGGGAGATAG-GA-TTG-TAGCTTTAA
* * * *
8189603 TCTGCTCCACTGCAACTTTAGGGAGATAAGACTT-CA-CTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTGTAGCTTTAA
* * * * * * *
8189645 TCAGCTCTACTTCAACTTCAAGGATATAGGATTATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT-GTAGCTTTAA
* * *
8189689 TCTGCTCCACTGCAACTTCAGGGAGATAAGATT-T-G-TCATGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTGTAGCT-TTAA
* * * * * * *
8189730 TCTACTCTACTACAACTTTAGAGAGATAAGATCTGTGATTTATAGTTTTAA
1 TCTGCTCCACTGCAACTTCAG-G-G---AGAT-AG-GA-TTGTAGCTTTAA
* * * * * * * * * *
8189781 TTTGTTTCACTAG-AGCTTCAAGAAAAT-GAGATTCGCTATCTTCAG
1 TCTGCTCCACT-GCAACTTCAGGGAGATAG-GATT-G-TAGCTTTAA
* * * * *
8189826 TCTGCCCCACTACAACTTTAGCGGA-ATAAGACTTGTAACTTTAA
1 TCTGCTCCACTGCAACTTCAG-GGAGATAGGA-TTGTAGCTTTAA
* * * * *
8189870 TCCGCTCCACTTCAACCTCAGGGAGATAGGATTATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT-GTAGCTTTAA
* * * * * * *
8189914 TATGCTCCAGTACAACTTCAGGGAGATAGGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTG-TAGCTTTAA
* * * ** * *
8189959 TTTG-TCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTCAG
1 TCTGCT-CCACTGCAACTTCAGGGAGATAGGA-TTG-TAGCTTTAA
* * * *
8190004 TCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTT-A
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTGTAGCTTTAA
* * *
8190047 TTTCGCTCCACTGCAATTTCAGGGAGATAGGATTTGTAACTTTAA
1 TCT-GCTCCACTGCAACTTCAGGGAGATAGGA-TTGTAGCTTTAA
* * * *
8190092 TCTTCTCCACTGCAACCTCAGGGAGATAGGATTATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT-GTAGCTTTAA
* * * * * * * *
8190136 TATGCTCTAGTACAACTTCAGGGAGATAGGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTG-TAGCTTTAA
* * * ** * *
8190181 TTTG-TCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTCAG
1 TCTGCT-CCACTGCAACTTCAGGGAGATAGGA-TTG-TAGCTTTAA
* * * *
8190226 TCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTT-A
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTGTAGCTTTAA
* * * *
8190269 TTTCGCTCCACTGCAATTTTAGGGAGATAGGATTTGTAACTTTAA
1 TCT-GCTCCACTGCAACTTCAGGGAGATAGGA-TTGTAGCTTTAA
* * * * *
8190314 TCTTCTCCACTGCAACTTCAAGGAGATAGAATTATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT-GTAGCTTTAA
* ** * * * *
8190358 TCTGTTCCACTGCAACTTCAGGGAGATAATATTCGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT-G-TAGCTTTAA
* * * * * * ** * *
8190403 TCTTCCCCACTGTAACATCAGGGGGATAAGACTTGTTTTCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTG-TAGCTTTAA
* * * *
8190448 TCTGCTCCAATACAACTTTAGGGAGATA-GACTTGTAACTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTGTAGCTTTAA
* * * *
8190491 TCCGCTCCACTGCAAGTTCAGGGAGATAGGATTATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT-GTAGCTTTAA
* * * * *
8190535 TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTG-TAGCTTTAA
* * * * ** *
8190580 TATGCCCCACTACAACTTCAGGG-GAATAAGACTTGCTTTCTTTAG
1 TCTGCTCCACTGCAACTTCAGGGAG-ATAGGA-TTG-TAGCTTTAA
* * ** * *
8190625 TCTACTCCAGTAAAACTTCAGGGAGATAGGACTGGTAACTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTGTAGCTTTAA
* * *
8190669 TCCGTTCCACTGCAACCTCAGGGAGATAGGATT
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT
8190702 TGTGGTTTCA
Statistics
Matches: 989, Mismatches: 276, Indels: 123
0.71 0.20 0.09
Matches are distributed among these distances:
40 1 0.00
41 50 0.05
42 33 0.03
43 48 0.05
44 465 0.47
45 315 0.32
46 28 0.03
48 3 0.00
49 2 0.00
50 5 0.01
51 15 0.02
52 13 0.01
53 11 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAGGATTGTAGCTTTAA
Found at i:8189884 original size:225 final size:224
Alignment explanation
Indices: 8189459--8189948 Score: 603
Period size: 225 Copynumber: 2.2 Consensus size: 224
8189449 GATTGGTATT
* * * * *
8189459 TTTAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGATGTAATCTGCTCTACTGCAACTTT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATG-AATCTACTCTACTACAACTTT
* * * * * *
8189524 AGAGAGATAAGGTCTTATGATTTATAGCTTTGATATATTCTACTACCATCTTCAGGGAGACGAGA
65 AGAGAGATAAGATCTTATGATTTATAGCTTTAATATATTCTACTACCAGCTTCAAGAAAACGAGA
* * * * *
8189589 TTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTCACTTCAATCAGCTCTA
130 TTCGCTATCTTCAGTCTGCCCCACTACAACTTTAGGGAGATAAGACTTAACTTCAATCAGCTCCA
* *
8189654 CTTCAACTTCAAGGATATAGGATTATTGGC
195 CTTCAACCTCAAGGAGATAGGATTATTGGC
8189684 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATG-ATCTACTCTACTACAACTT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG--ATGAATCTACTCTACTACAACTT
* * * * * *
8189748 TAGAGAGATAAGATC-TGTGATTTATAGTTTTAATTTGTT-TCACTA-GAGCTTCAAGAAAATGA
64 TAGAGAGATAAGATCTTATGATTTATAGCTTTAATATATTCT-ACTACCAGCTTCAAGAAAACGA
* *
8189810 GATTCGCTATCTTCAGTCTGCCCCACTACAACTTTAGCGGA-ATAAGACTTGTAACTTTAATCCG
128 GATTCGCTATCTTCAGTCTGCCCCACTACAACTTTAG-GGAGATAAGAC-T-TAACTTCAATCAG
*
8189874 CTCCACTTCAACCTCAGGGAGATAGGATTATTGGC
190 CTCCACTTCAACCTCAAGGAGATAGGATTATTGGC
* * * *
8189909 TTTAATATGCTCCAGTACAACTTCAGGGAGATAGGATTTG
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
8189949 CCATCTTCAG
Statistics
Matches: 228, Mismatches: 31, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
223 53 0.23
224 27 0.12
225 145 0.64
227 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (224 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATGAATCTACTCTACTACAACTTTA
GAGAGATAAGATCTTATGATTTATAGCTTTAATATATTCTACTACCAGCTTCAAGAAAACGAGAT
TCGCTATCTTCAGTCTGCCCCACTACAACTTTAGGGAGATAAGACTTAACTTCAATCAGCTCCAC
TTCAACCTCAAGGAGATAGGATTATTGGC
Found at i:8190125 original size:222 final size:222
Alignment explanation
Indices: 8189858--8190567 Score: 1102
Period size: 222 Copynumber: 3.2 Consensus size: 222
8189848 GGAATAAGAC
* *
8189858 TTGTAACTTTAATCCGCTCCACTTCAACCTCAGGGAGATAGGATTATTGGCTTTAATATGCTCCA
1 TTGTAACTTTAATCTGCTCCACTGCAACCTCAGGGAGATAGGATTATTGGCTTTAATATGCTCCA
8189923 GTACAACTTCAGGGAGATAGGATTTGCCATCTTCAGTTTGTCCCACTGCAACTTCAGGGGGATAA
66 GTACAACTTCAGGGAGATAGGATTTGCCATCTTCAGTTTGTCCCACTGCAACTTCAGGGGGATAA
8189988 GACTTGCTTTCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTATTTCGC
131 GACTTGCTTTCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTATTTCGC
8190053 TCCACTGCAATTTCAGGGAGATAGGAT
196 TCCACTGCAATTTCAGGGAGATAGGAT
* *
8190080 TTGTAACTTTAATCTTCTCCACTGCAACCTCAGGGAGATAGGATTATTGGCTTTAATATGCTCTA
1 TTGTAACTTTAATCTGCTCCACTGCAACCTCAGGGAGATAGGATTATTGGCTTTAATATGCTCCA
8190145 GTACAACTTCAGGGAGATAGGATTTGCCATCTTCAGTTTGTCCCACTGCAACTTCAGGGGGATAA
66 GTACAACTTCAGGGAGATAGGATTTGCCATCTTCAGTTTGTCCCACTGCAACTTCAGGGGGATAA
8190210 GACTTGCTTTCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTATTTCGC
131 GACTTGCTTTCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTATTTCGC
*
8190275 TCCACTGCAATTTTAGGGAGATAGGAT
196 TCCACTGCAATTTCAGGGAGATAGGAT
* * * * * *
8190302 TTGTAACTTTAATCTTCTCCACTGCAACTTCAAGGAGATAGAATTATTGGCTTTAATCTGTTCCA
1 TTGTAACTTTAATCTGCTCCACTGCAACCTCAGGGAGATAGGATTATTGGCTTTAATATGCTCCA
* * ** * * * *
8190367 CTGCAACTTCAGGGAGATAATATTCGCCATCTTCAGTCTT-CCCCACTGTAACATCAGGGGGATA
66 GTACAACTTCAGGGAGATAGGATTTGCCATCTTCAGT-TTGTCCCACTGCAACTTCAGGGGGATA
* * * * * *
8190431 AGACTTGTTTTCTTCAGTCTGCTCCAATACAACTTTAGGGAGAT-AGACTTGTAACTTTAATCCG
130 AGACTTGCTTTCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTATTTCG
*
8190495 CTCCACTGCAAGTTCAGGGAGATAGGAT
195 CTCCACTGCAATTTCAGGGAGATAGGAT
** * * *
8190523 TAT-TGGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATT
1 T-TGTAACTTTAATCTGCTCCACTGCAACCTCAGGGAGATAGGATT
8190568 TGCCATCTTT
Statistics
Matches: 452, Mismatches: 34, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
221 80 0.18
222 370 0.82
223 2 0.00
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (222 bp):
TTGTAACTTTAATCTGCTCCACTGCAACCTCAGGGAGATAGGATTATTGGCTTTAATATGCTCCA
GTACAACTTCAGGGAGATAGGATTTGCCATCTTCAGTTTGTCCCACTGCAACTTCAGGGGGATAA
GACTTGCTTTCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTATTTCGC
TCCACTGCAATTTCAGGGAGATAGGAT
Found at i:8190485 original size:177 final size:176
Alignment explanation
Indices: 8190187--8190697 Score: 623
Period size: 177 Copynumber: 2.9 Consensus size: 176
8190177 TCAGTTTGTC
* ** * *
8190187 CCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTCAGTCTACTCCACTACAACTTCAGGGAGA
1 CCACTGCAACTTCAGGGAGATAAGA-TTGCCATCTTCAGTCTACCCCACTACAACTTCAGGGGGA
** * * * * *
8190252 TAAGACTTGTAACTTTA-TTTCGCTCCACTGCAATTTTAGGGAGATAGGATTTGTAACTTTAATC
65 TAAGACTTGTTTCTTTAGTCT-GCTCCAATACAACTTTAGGGAGATAGGACTTGTAACTTTAATC
* * *
8190316 TTCTCCACTGCAACTTCAAGGAGATAGAATTATTGGCTTTAATCTGTT
129 CTCTCCACTGCAACTTCAGGGAGATAGAATTATTGGCTTTAATCTGCT
* * ** *
8190364 CCACTGCAACTTCAGGGAGATAATATTCGCCATCTTCAGTCTTCCCCACTGTAACATCAGGGGGA
1 CCACTGCAACTTCAGGGAGATAAGATT-GCCATCTTCAGTCTACCCCACTACAACTTCAGGGGGA
*
8190429 TAAGACTTGTTTTCTTCAGTCTGCTCCAATACAACTTTAGGGAGATA-GACTTGTAACTTTAATC
65 TAAGACTTG-TTTCTTTAGTCTGCTCCAATACAACTTTAGGGAGATAGGACTTGTAACTTTAATC
* * *
8190493 CGCTCCACTGCAAGTTCAGGGAGATAGGATTATTGGCTTTAATCTGCT
129 CTCTCCACTGCAACTTCAGGGAGATAGAATTATTGGCTTTAATCTGCT
* * * * *
8190541 CTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTTAGTATGCCCCACTACAACTTCAGGGGAA
1 CCACTGCAACTTCAGGGAGATAAGA-TTGCCATCTTCAGTCTACCCCACTACAACTTCAGGGGGA
* * * * *
8190606 TAAGACTTGCTTTCTTTAGTCTACTCCAGTAAAACTTCAGGGAGATAGGACTGGTAACTTTAATC
65 TAAGACTTG-TTTCTTTAGTCTGCTCCAATACAACTTTAGGGAGATAGGACTTGTAACTTTAATC
*
8190671 CGT-TCCACTGCAACCTCAGGGAGATAG
129 C-TCTCCACTGCAACTTCAGGGAGATAG
8190698 GATTTGTGGT
Statistics
Matches: 285, Mismatches: 43, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
176 2 0.01
177 213 0.75
178 68 0.24
179 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (176 bp):
CCACTGCAACTTCAGGGAGATAAGATTGCCATCTTCAGTCTACCCCACTACAACTTCAGGGGGAT
AAGACTTGTTTCTTTAGTCTGCTCCAATACAACTTTAGGGAGATAGGACTTGTAACTTTAATCCT
CTCCACTGCAACTTCAGGGAGATAGAATTATTGGCTTTAATCTGCT
Done.