Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 25 of 79
Found at i:8554778 original size:12 final size:12
Alignment explanation
Indices: 8554741--8554781 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
8554731 TAGAAATAAT
8554741 ATAAACAAACAA
1 ATAAACAAACAA
*
8554753 ACAAACAAACAA
1 ATAAACAAACAA
* *
8554765 ATAAATAAATAA
1 ATAAACAAACAA
8554777 ATAAA
1 ATAAA
8554782 AATCAATGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (12 bp):
ATAAACAAACAA
Found at i:8577647 original size:39 final size:39
Alignment explanation
Indices: 8577604--8577682 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
8577594 AATGGTTTAT
8577604 TTTCATTTTCAGGCTTAAAAACAATCCAAAAACATAAAA
1 TTTCATTTTCAGGCTTAAAAACAATCCAAAAACATAAAA
*
8577643 TTTCATTTTTAGGCTTAAAAACAATCCAAAAACATAAAA
1 TTTCATTTTCAGGCTTAAAAACAATCCAAAAACATAAAA
8577682 T
1 T
8577683 CATCCTTCCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.30
Consensus pattern (39 bp):
TTTCATTTTCAGGCTTAAAAACAATCCAAAAACATAAAA
Found at i:8583866 original size:53 final size:53
Alignment explanation
Indices: 8583790--8583897 Score: 137
Period size: 53 Copynumber: 2.0 Consensus size: 53
8583780 CCATGGCAAC
* * * * * *
8583790 ATGTGATATGTGATTTCCGTATAAGACTATAGCTGGGCTATGGCATCGGTGTG
1 ATGTGATATGAGATTTCCGTATAAAACCATAGCTAGGATATGGCATCAGTGTG
*
8583843 ATGTGATTATGAG-TTTCCGTATAAAACCATATCTAGGATATGGCATCAGTGTG
1 ATGTGA-TATGAGATTTCCGTATAAAACCATAGCTAGGATATGGCATCAGTGTG
8583896 AT
1 AT
8583898 ATGTGCTACT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
53 42 0.89
54 5 0.11
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (53 bp):
ATGTGATATGAGATTTCCGTATAAAACCATAGCTAGGATATGGCATCAGTGTG
Found at i:8586153 original size:37 final size:37
Alignment explanation
Indices: 8586102--8586177 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
8586092 TAGGCATCTT
* **
8586102 GTAACTCATTAAAACAATAAGGAATTTTGCTAGATGA
1 GTAACTCATCAAAACAATAAGGAATTGAGCTAGATGA
8586139 GTAACTCATCAAAACAATAAGGAATTGAGCTAGATGA
1 GTAACTCATCAAAACAATAAGGAATTGAGCTAGATGA
8586176 GT
1 GT
8586178 TACAAGTTAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.26
Consensus pattern (37 bp):
GTAACTCATCAAAACAATAAGGAATTGAGCTAGATGA
Found at i:8592267 original size:154 final size:152
Alignment explanation
Indices: 8591841--8592505 Score: 968
Period size: 154 Copynumber: 4.3 Consensus size: 152
8591831 TTTAGTGTGT
* * *
8591841 TTTTTATTGAAAGTAATAAAATCCGAGG-AAAAAATACGAACAAAAGACCGAAATAAGG-GTTTT
1 TTTTT-TT-AAAGTAATAAAATTCG-GGAAAAAAATACGAACAAAAGGCCGAAATAAGGTTTTTT
8591904 TTTAATTTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAA
63 TTTAATTTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAA
8591969 AATAATAAAATTAGAAAATAG--TA
128 AATAATAAAATTAGAAAATAGTATA
* * * * *
8591992 TTTTTTTAAAGTATTAAAATTCGGGGAAAAAATACGAATAAAGGGCCAAAATAAGGGTTTTTTTT
1 TTTTTTTAAAGTAATAAAATTCGGGAAAAAAATACGAACAAAAGGCCGAAATAA-GGTTTTTTTT
* * *
8592057 AAAATTTATTTAAAAAACACA-GAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAA
65 -TAATTTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAA
8592121 ATAATAAAATTAGAAAATAGTATA
129 ATAATAAAATTAGAAAATAGTATA
* * *
8592145 TTTTTTTAAAGTAATAAAATTCAGGAAAAAAATACGAACAAATGGCTGAAATAAGAGTTTTTTTT
1 TTTTTTTAAAGTAATAAAATTCGGGAAAAAAATACGAACAAAAGGCCGAAATAAG-GTTTTTTTT
* * *
8592210 TAAATTTATTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTGCTAAAATAATGTAAA
65 T-AATTTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAA
*
8592275 ATAATAAAA-TACGAAAATAATATA
129 ATAATAAAATTA-GAAAATAGTATA
* *
8592299 TTTTTATTGAAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCC-AAATAATGGTTTTTT
1 TTTTT-TT-AAAGTAATAAAATTCGGGAAAAAAATACGAACAAAAGGCCGAAATAA-GGTTTTTT
*
8592363 TTTAATTTATTTTAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAA
63 TTTAATTTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAA
8592428 AATAATAAAATTAGAAAATAGTATA
128 AATAATAAAATTAGAAAATAGTATA
*
8592453 TTTTTTTAAAGTAATAAAATTCGGGGAAAAAAT-CTGAACAAAAGGCCGAAATA
1 TTTTTTTAAAGTAATAAAATTCGGGAAAAAAATAC-GAACAAAAGGCCGAAATA
8592506 CAAACATGTT
Statistics
Matches: 465, Mismatches: 33, Indels: 30
0.88 0.06 0.06
Matches are distributed among these distances:
148 2 0.00
149 38 0.08
150 4 0.01
151 73 0.16
152 55 0.12
153 86 0.18
154 150 0.32
155 20 0.04
156 37 0.08
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (152 bp):
TTTTTTTAAAGTAATAAAATTCGGGAAAAAAATACGAACAAAAGGCCGAAATAAGGTTTTTTTTT
AATTTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAAT
AATAAAATTAGAAAATAGTATA
Found at i:8606184 original size:18 final size:19
Alignment explanation
Indices: 8606145--8606187 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
8606135 AATTATAAAA
* *
8606145 AAAATTCAAATTAATTTTT
1 AAAATTCAAAATAATTTAT
8606164 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTAT
8606182 AAAATT
1 AAAATT
8606188 TCCAAAATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATTCAAAATAATTTAT
Found at i:8606781 original size:19 final size:18
Alignment explanation
Indices: 8606757--8606809 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
8606747 TTTCAAAAAA
*
8606757 AAAATTCAAAAAGGTTTTC
1 AAAATTCAAAAA-ATTTTC
8606776 AAAATTCAAAATAATTTTC
1 AAAATTCAAAA-AATTTTC
8606795 AAAATT--AAAAATTTT
1 AAAATTCAAAAAATTTT
8606810 TATAAAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
16 6 0.19
17 3 0.09
19 22 0.69
20 1 0.03
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.36
Consensus pattern (18 bp):
AAAATTCAAAAAATTTTC
Found at i:8610998 original size:43 final size:43
Alignment explanation
Indices: 8610942--8611087 Score: 141
Period size: 43 Copynumber: 3.4 Consensus size: 43
8610932 TTACTGAGAG
* * * *
8610942 GTGATAACATGTAACACCATGTCTGGGACATTGGCATTG-TATT
1 GTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTA-T
* * *
8610985 GTGATTACGTGTAAGACCATGTTTAGGACATTAGCATCGTTAT
1 GTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT
* * * * * *
8611028 ATGATTTCGTTTAAGACCATGTCTGGGATAGTGGCATCGATAT
1 GTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT
* *
8611071 GTGATAACATGTAAGAC
1 GTGATTACGTGTAAGAC
8611088 TATATCTAGG
Statistics
Matches: 81, Mismatches: 21, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
43 79 0.98
44 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (43 bp):
GTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT
Found at i:8613345 original size:16 final size:16
Alignment explanation
Indices: 8613324--8613355 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8613314 TGTTTTTTTA
8613324 ATATAAATGAATCTAT
1 ATATAAATGAATCTAT
*
8613340 ATATAAATGTATCTAT
1 ATATAAATGAATCTAT
8613356 GTTATGATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (16 bp):
ATATAAATGAATCTAT
Found at i:8618506 original size:184 final size:184
Alignment explanation
Indices: 8618190--8618565 Score: 655
Period size: 184 Copynumber: 2.0 Consensus size: 184
8618180 AAAAATGACC
* * *
8618190 CATTAAGATGTCTACAAGCCCATCTTGAAGTTTGAAAAGTAATTTAATTAAATATCAGGCCAAAT
1 CATTAAAATGTCTACAAGCCCATCCTGAAGTTTGAAAAGCAATTTAATTAAATATCAGGCCAAAT
* *
8618255 TATCAAAGTGGCCCAAATTGTAAACTATTTAAGCTATAGGTTCAATTTTATTTTAATAGGTGGAT
66 TATCAAAATGGCCCAAATTGTAAACTATTTAAACTATAGGTTCAATTTTATTTTAATAGGTGGAT
8618320 CATCATGTAAGAATTCAGCCCAAAGAGCCCATTTAATTCCTTTGGCTAAATTCT
131 CATCATGTAAGAATTCAGCCCAAAGAGCCCATTTAATTCCTTTGGCTAAATTCT
* * *
8618374 CATTAAAATGTCTACAAGCTCATCCTGAAGTTTGGAAAGCAATTTAATTAAATATCAGGTCAAAT
1 CATTAAAATGTCTACAAGCCCATCCTGAAGTTTGAAAAGCAATTTAATTAAATATCAGGCCAAAT
8618439 TATCAAAATGGCCCAAATTGTAAGA-TATTTAAACTATAGGTTCAATTTTATTTTAATAGGTGGA
66 TATCAAAATGGCCCAAATTGTAA-ACTATTTAAACTATAGGTTCAATTTTATTTTAATAGGTGGA
*
8618503 TCATCATGTAAGAATTCAGCCCAAAGAGCCCATTTAATTCCTTTGGCTGAATTCT
130 TCATCATGTAAGAATTCAGCCCAAAGAGCCCATTTAATTCCTTTGGCTAAATTCT
8618558 CATTAAAA
1 CATTAAAA
8618566 GTTCACACTT
Statistics
Matches: 182, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
184 181 0.99
185 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (184 bp):
CATTAAAATGTCTACAAGCCCATCCTGAAGTTTGAAAAGCAATTTAATTAAATATCAGGCCAAAT
TATCAAAATGGCCCAAATTGTAAACTATTTAAACTATAGGTTCAATTTTATTTTAATAGGTGGAT
CATCATGTAAGAATTCAGCCCAAAGAGCCCATTTAATTCCTTTGGCTAAATTCT
Found at i:8628601 original size:34 final size:35
Alignment explanation
Indices: 8628557--8628623 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
8628547 CAGTAAAATA
*
8628557 TTTTCCGTAAAATGATTT-TTGGAAAATATTTTAT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAT
*
8628591 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
8628624 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.49
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAT
Found at i:8628942 original size:18 final size:19
Alignment explanation
Indices: 8628921--8628971 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 19
8628911 TTCATGAGCT
8628921 TTTTATAATTATTTTTA-A
1 TTTTATAATTATTTTTATA
8628939 TTTTA-AA--ATTTTTATA
1 TTTTATAATTATTTTTATA
*
8628955 TTTTTTAATTTATTTTT
1 TTTTATAA-TTATTTTT
8628972 TGACAGTGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
15 7 0.26
16 5 0.19
17 4 0.15
18 5 0.19
20 6 0.22
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTATAATTATTTTTATA
Found at i:8632850 original size:24 final size:23
Alignment explanation
Indices: 8632808--8632872 Score: 87
Period size: 24 Copynumber: 2.7 Consensus size: 23
8632798 GGCCCATATT
*
8632808 AAAT-ATATATTTGCTTAAAAATAA
1 AAATAATATATTTG-ATAAAAAT-A
8632832 AAATAATATATTTGATAAAAATA
1 AAATAATATATTTGATAAAAATA
8632855 AAATATATATATTTGATA
1 AAATA-ATATATTTGATA
8632873 TATAATTCGG
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
23 6 0.16
24 23 0.61
25 9 0.24
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (23 bp):
AAATAATATATTTGATAAAAATA
Found at i:8634699 original size:85 final size:84
Alignment explanation
Indices: 8634610--8634855 Score: 244
Period size: 84 Copynumber: 2.9 Consensus size: 84
8634600 TTGGGCAAGT
* * * *
8634610 CGAAGCAATTATAATGGCACACGAGGTGTAT-ATCGGACGAACCAAAGCAATTATACTGGCACAC
1 CGAAGTAATTATAATGGCACA-GAAGTGCATCATCAGACGAACCAAAGCAATTATACTGG--CAC
8634674 GTAA-TGCATCATCGAATAAAC
63 GTAAGTGCATCATCGAATAAAC
** * * * * *
8634695 CGAAGTAATTATGCTGGCACATAAGTGCATCATTAGATGTACCGAAGCAATTATACTGGCACGTA
1 CGAAGTAATTATAATGGCACAGAAGTGCATCATCAGACGAACCAAAGCAATTATACTGGCACGTA
*
8634760 AGTGCATCATCGGATAAAC
66 AGTGCATCATCGAATAAAC
* * * * ** * * * *
8634779 CGAAATAATTATACTGACACATAAGTGCATCATCAGATAAACCAAAACAAATATACTAGCAGGTA
1 CGAAGTAATTATAATGGCACAGAAGTGCATCATCAGACGAACCAAAGCAATTATACTGGCACGTA
*
8634844 AGTGCATTATCG
66 AGTGCATCATCG
8634856 GCTAAATCAA
Statistics
Matches: 135, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
83 7 0.05
84 87 0.64
85 41 0.30
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.23
Consensus pattern (84 bp):
CGAAGTAATTATAATGGCACAGAAGTGCATCATCAGACGAACCAAAGCAATTATACTGGCACGTA
AGTGCATCATCGAATAAAC
Found at i:8634739 original size:42 final size:42
Alignment explanation
Indices: 8634649--8634821 Score: 206
Period size: 42 Copynumber: 4.1 Consensus size: 42
8634639 ATATCGGACG
* *
8634649 AACCAAAGCAATTATACTGGCACACGTAA-TGCATCATC-GAATA
1 AACCGAAGTAATTATACTGGCACA--TAAGTGCATCATCAG-ATA
* * *
8634692 AACCGAAGTAATTATGCTGGCACATAAGTGCATCATTAGATG
1 AACCGAAGTAATTATACTGGCACATAAGTGCATCATCAGATA
* * * *
8634734 TACCGAAGCAATTATACTGGCACGTAAGTGCATCATCGGATA
1 AACCGAAGTAATTATACTGGCACATAAGTGCATCATCAGATA
* *
8634776 AACCGAAATAATTATACTGACACATAAGTGCATCATCAGATA
1 AACCGAAGTAATTATACTGGCACATAAGTGCATCATCAGATA
8634818 AACC
1 AACC
8634822 AAAACAAATA
Statistics
Matches: 110, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
41 3 0.03
42 85 0.77
43 22 0.20
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (42 bp):
AACCGAAGTAATTATACTGGCACATAAGTGCATCATCAGATA
Found at i:8634800 original size:84 final size:84
Alignment explanation
Indices: 8634649--8634861 Score: 275
Period size: 84 Copynumber: 2.5 Consensus size: 84
8634639 ATATCGGACG
* * * *
8634649 AACCAAAGCAATTATACTGGCACACGTAA-TGCATCATCGAATAAACCGAAGTAATTATGCTGGC
1 AACCAAAGCAATTATACTGG--CACGTAAGTGCATCATCGGATAAACCGAAATAATTATACTGAC
* *
8634713 ACATAAGTGCATCATTAGATG
64 ACATAAGTGCATCATCAGATA
* *
8634734 TACCGAAGCAATTATACTGGCACGTAAGTGCATCATCGGATAAACCGAAATAATTATACTGACAC
1 AACCAAAGCAATTATACTGGCACGTAAGTGCATCATCGGATAAACCGAAATAATTATACTGACAC
8634799 ATAAGTGCATCATCAGATA
66 ATAAGTGCATCATCAGATA
* * * * * *
8634818 AACCAAAACAAATATACTAGCAGGTAAGTGCATTATCGGCTAAA
1 AACCAAAGCAATTATACTGGCACGTAAGTGCATCATCGGATAAA
8634862 TCAAAGTATA
Statistics
Matches: 111, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
83 7 0.06
84 86 0.77
85 18 0.16
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (84 bp):
AACCAAAGCAATTATACTGGCACGTAAGTGCATCATCGGATAAACCGAAATAATTATACTGACAC
ATAAGTGCATCATCAGATA
Found at i:8634846 original size:42 final size:41
Alignment explanation
Indices: 8634649--8634850 Score: 176
Period size: 42 Copynumber: 4.8 Consensus size: 41
8634639 ATATCGGACG
8634649 AACC-AAAGCAATTATACTGGCACACGTAA-TGCATCATC-GAATA
1 AACCGAAA-CAATTATACT-G--CACGTAAGTGCATCATCAG-ATA
** * * * *
8634692 AACCGAAGTAATTATGCTGGCACATAAGTGCATCATTAGATG
1 AACCGAAACAATTATACT-GCACGTAAGTGCATCATCAGATA
* * *
8634734 TACCGAAGCAATTATACTGGCACGTAAGTGCATCATCGGATA
1 AACCGAAACAATTATACT-GCACGTAAGTGCATCATCAGATA
* *
8634776 AACCGAAATAATTATACTGACACATAAGTGCATCATCAGATA
1 AACCGAAACAATTATACTG-CACGTAAGTGCATCATCAGATA
* * *
8634818 AACCAAAACAAATATACTAGCAGGTAAGTGCAT
1 AACCGAAACAATTATACT-GCACGTAAGTGCAT
8634851 TATCGGCTAA
Statistics
Matches: 131, Mismatches: 23, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
41 7 0.05
42 106 0.81
43 16 0.12
44 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.23
Consensus pattern (41 bp):
AACCGAAACAATTATACTGCACGTAAGTGCATCATCAGATA
Found at i:8639348 original size:673 final size:672
Alignment explanation
Indices: 8638063--8639410 Score: 2660
Period size: 673 Copynumber: 2.0 Consensus size: 672
8638053 CACCAAGGCC
8638063 ATTAATATTGCAACATATCATACCATTTCAAAACCCAATTTAATTCTCTTTACAAGCCATATTCA
1 ATTAATATTGCAACATATCATACCATTTCAAAACCCAATTTAATTCTCTTTACAAGCCATATTCA
*
8638128 ATTAACCAAGCTCATACATTAACCTTTAAAACCATAAGTGCATATAAACATAGTTTTATATCAAA
66 ATTAACCAAGCTCATACATTAACCTTTAAAACCATAAGTGAATATAAACATAGTTTTATATCAAA
8638193 TATGACCCAGCCTAGGTACATGCCAAAATTAGAACAAATAGAATTTGTACGAAATTCGTTGAGTT
131 TATGACCCAGCCTAGGTACATGCCAAAATTAGAACAAATAGAATTTGTACGAAATTCGTTGAGTT
8638258 AGGGATCGATTTCTAGATGCTGGATCAACTGCTCGAACAACCTAAATCTACTTTACTTGCGAGAA
196 AGGGATCGATTTCTAGATGCTGGATCAACTGCTCGAACAACCTAAATCTACTTTACTTGCGAGAA
8638323 AGAAAAACAAATCGTACACTAAGTAAGTACGTTCAGTGGTAAATTTATGATTCAAGACAACATAA
261 AGAAAAACAAATCGTACACTAAGTAAGTACGTTCAGTGGTAAATTTATGATTCAAGACAACATAA
*
8638388 TAATATTATGCAAAATGCACATATTCAATTCTTAACCCAATCATATACCATTTATGTCAACCACT
326 TAATATTATGCAAAATGCACATATTCAATTCTTAACCCAATCACATACCATTTATGTCAACCACT
8638453 TTCAATCTCAATAGTTATGTTTATACCAATATTTACATGCCAATTTACTTACCTATTCATGCCAA
391 TTCAATCTCAATAGTTATGTTTATACCAATATTTACATGCCAATTTACTTACCTATTCATGCCAA
8638518 AACTATCATTTCTACTTAACTTATACATATTCGTTTATGCAACTCAATTCAAAACATGAGTTTCT
456 AACTATCATTTCTACTTAACTTATACATATTCGTTTATGCAACTCAATTCAAAACATGAGTTTCT
8638583 AAACATACCATTCAATTCACAAGTATAAATTCATCATCTTGAATACATTTATATAGATATTTATA
521 AAACATACCATTCAATTCACAAGTATAAATTCATCATCTTGAATACATTTATATAGATATTTATA
8638648 CTCAATTACATGTTCATTTCAATCATTTCCGAGAAGCTCATTCATACTCAATCCACCCATTTGGC
586 CTCAATTACATGTTCATTTCAATCATTTCCGAGAAGCTCATTCATACTCAATCCACCCATTTGGC
8638713 TCATTGACCATTTGTTTTGCAT
651 TCATTGACCATTTGTTTTGCAT
8638735 ATTAATATTGCAACATATCATACCATTTCAAAACCCAATTTAATTCTCTTTACAAGCCATATTCA
1 ATTAATATTGCAACATATCATACCATTTCAAAACCCAATTTAATTCTCTTTACAAGCCATATTCA
8638800 ATTAACCAAGCTCATACATTAACCTTTAAAACCATAAGTGAATATAAACATAGTTTTATATCAAA
66 ATTAACCAAGCTCATACATTAACCTTTAAAACCATAAGTGAATATAAACATAGTTTTATATCAAA
8638865 TATGACCCAGCCTAGGTACATGCCAAAATTAGAACAAATAGAATTTGTACGAAATTCGTTGAGTT
131 TATGACCCAGCCTAGGTACATGCCAAAATTAGAACAAATAGAATTTGTACGAAATTCGTTGAGTT
8638930 AGGGATCGATTTCTAGATGCTGGATCAACTGCTCGAACAACCTAAATCTACTTTACTTGCGCAGA
196 AGGGATCGATTTCTAGATGCTGGATCAACTGCTCGAACAACCTAAATCTACTTTACTTGCG-AGA
8638995 AAGAAAAACAAATCGTACACTAAGTAAGTACGTTCAGTGGTAAATTTATGATTCAAGACAACATA
260 AAGAAAAACAAATCGTACACTAAGTAAGTACGTTCAGTGGTAAATTTATGATTCAAGACAACATA
8639060 ATAATATTATGCAAAATGCACATATTCAATTCTTAACCCAATCACATACCATTTATGTCAACCAC
325 ATAATATTATGCAAAATGCACATATTCAATTCTTAACCCAATCACATACCATTTATGTCAACCAC
8639125 TTTCAATCTCAATAGTTATGTTTATACCAATATTTACATGCCAATTTACTTACCTATTCATGCCA
390 TTTCAATCTCAATAGTTATGTTTATACCAATATTTACATGCCAATTTACTTACCTATTCATGCCA
8639190 AAACTATCATTTCTACTTAACTTATACATATTCGTTTATGCAACTCAATTCAAAACATGAGTTTC
455 AAACTATCATTTCTACTTAACTTATACATATTCGTTTATGCAACTCAATTCAAAACATGAGTTTC
*
8639255 TAAACATACCATTCAATTCACAAGTATAAATTCATCATTTTGAATACATTTATATAGATATTTAT
520 TAAACATACCATTCAATTCACAAGTATAAATTCATCATCTTGAATACATTTATATAGATATTTAT
8639320 ACTCAATTACATGTTCATTTCAATCATTTCCGAGAAGCTCATTCATACTCAATCCACCCATTTGG
585 ACTCAATTACATGTTCATTTCAATCATTTCCGAGAAGCTCATTCATACTCAATCCACCCATTTGG
8639385 CTCATTGACCATTTGTTTTGCAT
650 CTCATTGACCATTTGTTTTGCAT
8639408 ATT
1 ATT
8639411 GCAATTCAAA
Statistics
Matches: 672, Mismatches: 3, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
672 255 0.38
673 417 0.62
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (672 bp):
ATTAATATTGCAACATATCATACCATTTCAAAACCCAATTTAATTCTCTTTACAAGCCATATTCA
ATTAACCAAGCTCATACATTAACCTTTAAAACCATAAGTGAATATAAACATAGTTTTATATCAAA
TATGACCCAGCCTAGGTACATGCCAAAATTAGAACAAATAGAATTTGTACGAAATTCGTTGAGTT
AGGGATCGATTTCTAGATGCTGGATCAACTGCTCGAACAACCTAAATCTACTTTACTTGCGAGAA
AGAAAAACAAATCGTACACTAAGTAAGTACGTTCAGTGGTAAATTTATGATTCAAGACAACATAA
TAATATTATGCAAAATGCACATATTCAATTCTTAACCCAATCACATACCATTTATGTCAACCACT
TTCAATCTCAATAGTTATGTTTATACCAATATTTACATGCCAATTTACTTACCTATTCATGCCAA
AACTATCATTTCTACTTAACTTATACATATTCGTTTATGCAACTCAATTCAAAACATGAGTTTCT
AAACATACCATTCAATTCACAAGTATAAATTCATCATCTTGAATACATTTATATAGATATTTATA
CTCAATTACATGTTCATTTCAATCATTTCCGAGAAGCTCATTCATACTCAATCCACCCATTTGGC
TCATTGACCATTTGTTTTGCAT
Found at i:8642934 original size:17 final size:18
Alignment explanation
Indices: 8642912--8642947 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
8642902 TCCACAGAAT
8642912 ATATTTTTAT-TTTTTTC
1 ATATTTTTATATTTTTTC
*
8642929 ATATTTTTCTATTTTTTC
1 ATATTTTTATATTTTTTC
8642947 A
1 A
8642948 CTTTTTCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.72
Consensus pattern (18 bp):
ATATTTTTATATTTTTTC
Found at i:8645845 original size:22 final size:21
Alignment explanation
Indices: 8645807--8645851 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
8645797 TTGATCATCA
*
8645807 CTTTTCTTTCTGTCACATTTT
1 CTTTTCTTTCTGTCACAATTT
8645828 CTTTTCTTTTCATG-CACAATTT
1 CTTTTC-TTTC-TGTCACAATTT
8645850 CT
1 CT
8645852 AGCAAGAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 13 0.62
23 2 0.10
ACGTcount: A:0.13, C:0.24, G:0.04, T:0.58
Consensus pattern (21 bp):
CTTTTCTTTCTGTCACAATTT
Found at i:8653891 original size:13 final size:13
Alignment explanation
Indices: 8653873--8653897 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8653863 ATGGAACCAC
8653873 ATGATCTACATGT
1 ATGATCTACATGT
8653886 ATGATCTACATG
1 ATGATCTACATG
8653898 AAAGTTGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
ATGATCTACATGT
Found at i:8655898 original size:18 final size:18
Alignment explanation
Indices: 8655877--8655936 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
8655867 AAAAAATATA
* *
8655877 TTAAAGTTTTTAAAGTTT
1 TTAAAATTTTTAAACTTT
*
8655895 TTAAAATTTTTATACTTT
1 TTAAAATTTTTAAACTTT
* *
8655913 TTAAATAATTTTAATAATTT
1 TTAAA-ATTTTTAA-ACTTT
8655933 TTAA
1 TTAA
8655937 TTTGAATTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 20 0.59
19 6 0.18
20 8 0.24
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (18 bp):
TTAAAATTTTTAAACTTT
Found at i:8655905 original size:10 final size:9
Alignment explanation
Indices: 8655877--8655917 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
8655867 AAAAAATATA
8655877 TTAAAGTTT
1 TTAAAGTTT
8655886 TTAAAGTTT
1 TTAAAGTTT
*
8655895 TTAAAATTT
1 TTAAAGTTT
* *
8655904 TTATACTTT
1 TTAAAGTTT
8655913 TTAAA
1 TTAAA
8655918 TAATTTTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (9 bp):
TTAAAGTTT
Found at i:8655924 original size:20 final size:20
Alignment explanation
Indices: 8655899--8655979 Score: 60
Period size: 20 Copynumber: 4.0 Consensus size: 20
8655889 AAGTTTTTAA
* *
8655899 AATTTTTATACTTTTTAAAT
1 AATTTTAATAATTTTTAAAT
*
8655919 AATTTTAATAATTTTTAATTT
1 AATTTTAATAATTTTTAA-AT
*
8655940 GAATTTAAAATAATTTTTATAAT
1 -AATTT-TAATAATTTTTA-AAT
8655963 -ATTTT--TGAATTTTTAAA
1 AATTTTAAT-AATTTTTAAA
8655980 ATTTTAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
18 3 0.06
19 8 0.16
20 16 0.32
21 5 0.10
22 5 0.10
23 12 0.24
24 1 0.02
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (20 bp):
AATTTTAATAATTTTTAAAT
Found at i:8657203 original size:16 final size:16
Alignment explanation
Indices: 8657182--8657233 Score: 68
Period size: 16 Copynumber: 3.1 Consensus size: 16
8657172 GGTTTAATCG
8657182 ATTTAGTTGTTTGTTT
1 ATTTAGTTGTTTGTTT
*
8657198 ATTTAGTTGTTTATTT
1 ATTTAGTTGTTTGTTT
*
8657214 ATTTTAGTTATTTAGTTT
1 A-TTTAGTTGTTT-GTTT
8657232 AT
1 AT
8657234 GATATTTATC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
16 16 0.52
17 11 0.35
18 4 0.13
ACGTcount: A:0.19, C:0.00, G:0.13, T:0.67
Consensus pattern (16 bp):
ATTTAGTTGTTTGTTT
Found at i:8657360 original size:33 final size:33
Alignment explanation
Indices: 8657323--8657402 Score: 142
Period size: 33 Copynumber: 2.4 Consensus size: 33
8657313 CTTTTTATGC
*
8657323 AAGCGCCGCAAAAAGTATTTGCGGCGTTTTTGA
1 AAGCGCCGCAAAAAGTATTTCCGGCGTTTTTGA
8657356 AAGCGCCGCAAAAAGTATTTCCGGCGTTTTTGA
1 AAGCGCCGCAAAAAGTATTTCCGGCGTTTTTGA
*
8657389 AAGCACCGCAAAAA
1 AAGCGCCGCAAAAA
8657403 ATGCCGCTGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.23
Consensus pattern (33 bp):
AAGCGCCGCAAAAAGTATTTCCGGCGTTTTTGA
Found at i:8657505 original size:43 final size:43
Alignment explanation
Indices: 8657438--8657663 Score: 326
Period size: 43 Copynumber: 5.3 Consensus size: 43
8657428 TTTTAGAAAT
* *
8657438 AAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCAC
* * * *
8657481 AAATGTCGCTATAGATCAGGACCTTTAGCGTCGCTTTTTCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCAC
* * *
8657524 AAACGCCGCTATAGATTAGGACCTTTAGCGGCGTTTTTTCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCAC
*
8657567 AAACGCCGCTATAGCTCAAGACCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCAC
* * *
8657610 AAACGCTGCTATAGCTCAAGACCTTTAGCGACGCTTTTTCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCAC
*
8657653 AAAAGCCGCTA
1 AAACGCCGCTA
8657664 AAAATACTGT
Statistics
Matches: 165, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 165 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCAC
Found at i:8659901 original size:3 final size:3
Alignment explanation
Indices: 8659893--8659940 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
8659883 AGAAAATCAT
8659893 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8659941 AGGAATCACC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8661200 original size:22 final size:24
Alignment explanation
Indices: 8661163--8661206 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
8661153 AATAACTTAG
8661163 GGAAATTTAGGGGAAACGAAGTTA
1 GGAAATTTAGGGGAAACGAAGTTA
*
8661187 GGAAA-TT-GGGGAAATGAAGT
1 GGAAATTTAGGGGAAACGAAGT
8661207 CGGGAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 2 0.11
24 5 0.26
ACGTcount: A:0.41, C:0.02, G:0.36, T:0.20
Consensus pattern (24 bp):
GGAAATTTAGGGGAAACGAAGTTA
Found at i:8661212 original size:22 final size:24
Alignment explanation
Indices: 8661162--8661213 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 24
8661152 GAATAACTTA
*
8661162 GGGAAATTTAGGGGAAACGAAGTT
1 GGGAAATTTAGGGGAAACGAAGTC
* *
8661186 AGGAAA-TT-GGGGAAATGAAGTC
1 GGGAAATTTAGGGGAAACGAAGTC
8661208 GGGAAA
1 GGGAAA
8661214 ATCTGACATG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 17 0.71
23 2 0.08
24 5 0.21
ACGTcount: A:0.40, C:0.04, G:0.38, T:0.17
Consensus pattern (24 bp):
GGGAAATTTAGGGGAAACGAAGTC
Found at i:8662398 original size:13 final size:13
Alignment explanation
Indices: 8662380--8662420 Score: 64
Period size: 13 Copynumber: 3.0 Consensus size: 13
8662370 ACTAGTTAAT
8662380 CTAAACCTAAACC
1 CTAAACCTAAACC
8662393 CTAAACCTAAACC
1 CTAAACCTAAACC
8662406 CTAAAACCCTAAACC
1 CT-AAA-CCTAAACC
8662421 TTTAGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 15 0.58
14 3 0.12
15 8 0.31
ACGTcount: A:0.46, C:0.39, G:0.00, T:0.15
Consensus pattern (13 bp):
CTAAACCTAAACC
Found at i:8662414 original size:8 final size:7
Alignment explanation
Indices: 8662380--8662420 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
8662370 ACTAGTTAAT
8662380 CTAAA-C
1 CTAAACC
8662386 CTAAACC
1 CTAAACC
8662393 CTAAA-C
1 CTAAACC
8662399 CTAAACC
1 CTAAACC
8662406 CTAAAACC
1 CT-AAACC
8662414 CTAAACC
1 CTAAACC
8662421 TTTAGCACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 11 0.34
7 14 0.44
8 7 0.22
ACGTcount: A:0.46, C:0.39, G:0.00, T:0.15
Consensus pattern (7 bp):
CTAAACC
Found at i:8662468 original size:7 final size:7
Alignment explanation
Indices: 8662458--8662511 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
8662448 CCCCAGCCTT
8662458 TAAACCA
1 TAAACCA
8662465 TAAACCA
1 TAAACCA
*
8662472 TAAATCA
1 TAAACCA
* *
8662479 TAACCCC
1 TAAACCA
8662486 TAAACCCA
1 TAAA-CCA
*
8662494 TAATCCA
1 TAAACCA
*
8662501 TAAACCT
1 TAAACCA
8662508 TAAA
1 TAAA
8662512 ATAGTAACTC
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
7 32 0.86
8 5 0.14
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCA
Found at i:8662987 original size:42 final size:41
Alignment explanation
Indices: 8662881--8662987 Score: 101
Period size: 42 Copynumber: 2.6 Consensus size: 41
8662871 TTTTTTGCGG
** *
8662881 CGCTTTTTCAAAAACACCGTTAAA-AATAGAGCATTAGCGG
1 CGCTTTTTCAAAAACACCGTTAAAGAATAGAGCAACAGCGA
* * * * * *
8662921 TGCTTTTCCAAAAACGCTGCTAAAGACCA-ATAGCAACAGCGA
1 CGCTTTTTCAAAAACACCGTTAAAGA--ATAGAGCAACAGCGA
8662963 CGCTTTTTCAAAAACACCGTTAAAG
1 CGCTTTTTCAAAAACACCGTTAAAG
8662988 TTGACTTTTT
Statistics
Matches: 50, Mismatches: 14, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
40 19 0.38
41 1 0.02
42 29 0.58
43 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.23
Consensus pattern (41 bp):
CGCTTTTTCAAAAACACCGTTAAAGAATAGAGCAACAGCGA
Found at i:8663131 original size:41 final size:41
Alignment explanation
Indices: 8663063--8663142 Score: 97
Period size: 41 Copynumber: 2.0 Consensus size: 41
8663053 AAAATCATGA
* * * * *
8663063 ACATTAGCGGCGCTTTCTCACAGACGCCGCTAAATCCCCAT
1 ACATTAGCGACGCTTTCTCAAAAACGCCACTAAAGCCCCAT
* *
8663104 ACATTAGCGACGCTTTTTGAAAAACGCCACTAAAGCCCC
1 ACATTAGCGACGCTTTCTCAAAAACGCCACTAAAGCCCC
8663143 TAAAACACAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.29, C:0.34, G:0.16, T:0.21
Consensus pattern (41 bp):
ACATTAGCGACGCTTTCTCAAAAACGCCACTAAAGCCCCAT
Found at i:8664655 original size:27 final size:26
Alignment explanation
Indices: 8664625--8664685 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
8664615 TGCTTTTGGG
*
8664625 TTAATAAAATTCTCTTTGATTTTTATT
1 TTAATAAAATTCTC-TTGAGTTTTATT
*
8664652 TTAA-AGAAATTCTCTTGAGTTTTCTT
1 TTAATA-AAATTCTCTTGAGTTTTATT
8664678 TTAGATAA
1 TTA-ATAA
8664686 GTTTTAACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
26 14 0.48
27 14 0.48
28 1 0.03
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.52
Consensus pattern (26 bp):
TTAATAAAATTCTCTTGAGTTTTATT
Found at i:8675078 original size:27 final size:25
Alignment explanation
Indices: 8675048--8675103 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 25
8675038 TGTTTTTCAG
8675048 TTAATGAAATTCTCTTTGAGTTTTCTT
1 TTAAT-AAATTCTC-TTGAGTTTTCTT
*
8675075 TTAAATAATTTCTCTTGAGTTTTCTT
1 TT-AATAAATTCTCTTGAGTTTTCTT
8675101 TTA
1 TTA
8675104 GAAGAGTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 1 0.04
26 14 0.52
27 9 0.33
28 3 0.11
ACGTcount: A:0.23, C:0.11, G:0.09, T:0.57
Consensus pattern (25 bp):
TTAATAAATTCTCTTGAGTTTTCTT
Found at i:8680923 original size:63 final size:63
Alignment explanation
Indices: 8680850--8680977 Score: 220
Period size: 63 Copynumber: 2.0 Consensus size: 63
8680840 ATATCGGACC
8680850 ATCTATTCACTACTCACTCAATTTCATTTTGAAAACCTCTAAATTATTTCTACCTAACCCTCA
1 ATCTATTCACTACTCACTCAATTTCATTTTGAAAACCTCTAAATTATTTCTACCTAACCCTCA
* * * *
8680913 ATCTATTCACTATTCACTTAATTTCATTTTTAAAACCTCTAAATTATTTCTATCTAACCCTCA
1 ATCTATTCACTACTCACTCAATTTCATTTTGAAAACCTCTAAATTATTTCTACCTAACCCTCA
8680976 AT
1 AT
8680978 GTTCGTGCCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.32, C:0.26, G:0.01, T:0.41
Consensus pattern (63 bp):
ATCTATTCACTACTCACTCAATTTCATTTTGAAAACCTCTAAATTATTTCTACCTAACCCTCA
Found at i:8683680 original size:24 final size:25
Alignment explanation
Indices: 8683635--8683682 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
8683625 ATTTTTGGGA
*
8683635 AAATTAATTTTAATCAAATAAAATC
1 AAATTAATTTAAATCAAATAAAATC
* *
8683660 AAATT-ATTTAAATTAATTAAAAT
1 AAATTAATTTAAATCAAATAAAAT
8683683 TAACATAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (25 bp):
AAATTAATTTAAATCAAATAAAATC
Found at i:8685509 original size:27 final size:26
Alignment explanation
Indices: 8685450--8685619 Score: 153
Period size: 27 Copynumber: 6.3 Consensus size: 26
8685440 GTGAGGTCAA
* * *
8685450 TAAAATGACCGAAATACCCCGTAGGG
1 TAAAATAACCAAAATACCCCATAGGG
*
8685476 TAAAATAACCGAAATACCCTCATAGGG
1 TAAAATAACCAAAATACCC-CATAGGG
*
8685503 TAAAATAACCAAAATACCCCTTTAGAGG
1 TAAAATAACCAAAATACCCC-ATAG-GG
* * * * *
8685531 -AAAATGACCGAAAGACCCCTGTAAGG
1 TAAAATAACCAAAATACCCC-ATAGGG
* *
8685557 TAAAATAACCAAAACACCGCCATCGGG
1 TAAAATAACCAAAATACC-CCATAGGG
* *
8685584 TAAAATGACCAAAATACCCACATAGGT
1 TAAAATAACCAAAATACCC-CATAGGG
8685611 TAAAATAAC
1 TAAAATAAC
8685620 TATTATACCC
Statistics
Matches: 118, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
26 22 0.19
27 92 0.78
28 4 0.03
ACGTcount: A:0.45, C:0.23, G:0.15, T:0.16
Consensus pattern (26 bp):
TAAAATAACCAAAATACCCCATAGGG
Found at i:8685586 original size:81 final size:80
Alignment explanation
Indices: 8685451--8685602 Score: 225
Period size: 81 Copynumber: 1.9 Consensus size: 80
8685441 TGAGGTCAAT
* * * *
8685451 AAAATGACCGAAATACCCCGTAGGGTAAAATAACCGAAATACCCTCATAGGGTAAAATAACCAAA
1 AAAATGACCGAAAGACCCCGTAAGGTAAAATAACCAAAACACCCTCATAGGGTAAAATAACCAAA
8685516 ATACCCCTTTAGAGG
66 ATACCCCTTTAGAGG
* *
8685531 AAAATGACCGAAAGACCCCTGTAAGGTAAAATAACCAAAACACCGC-CATCGGGTAAAATGACCA
1 AAAATGACCGAAAGACCCC-GTAAGGTAAAATAACCAAAACACC-CTCATAGGGTAAAATAACCA
8685595 AAATACCC
64 AAATACCC
8685603 ACATAGGTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
80 18 0.28
81 45 0.70
82 1 0.02
ACGTcount: A:0.45, C:0.24, G:0.16, T:0.15
Consensus pattern (80 bp):
AAAATGACCGAAAGACCCCGTAAGGTAAAATAACCAAAACACCCTCATAGGGTAAAATAACCAAA
ATACCCCTTTAGAGG
Found at i:8693114 original size:27 final size:27
Alignment explanation
Indices: 8693062--8693203 Score: 189
Period size: 27 Copynumber: 5.3 Consensus size: 27
8693052 GTGAGGTCAA
* * *
8693062 TAAAATGACTGAAATACCTCCGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
8693089 TAAAATGACCGGAAGACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
8693116 TAAAATGATCGAAATACCCCCGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
*
8693143 TAAAATGACCAAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
*
8693170 TAAAATGACCGAAATACCCACAT--GG
1 TAAAATGACCGAAATACCCCCATAGGG
8693195 TAAAATGAC
1 TAAAATGAC
8693204 TGTTATACCC
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
25 11 0.11
27 90 0.89
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.17
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCCATAGGG
Found at i:8693406 original size:26 final size:26
Alignment explanation
Indices: 8693377--8693429 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8693367 TCTGCCACAT
*
8693377 ATACTATTACTGGTAGCTTTGTTGCG
1 ATACTATTACTGGTAGCTTTGCTGCG
8693403 ATACTATTACTGGTAGCTTTGCTGCG
1 ATACTATTACTGGTAGCTTTGCTGCG
8693429 A
1 A
8693430 ATTTGGTGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATACTATTACTGGTAGCTTTGCTGCG
Found at i:8694500 original size:68 final size:68
Alignment explanation
Indices: 8694425--8694641 Score: 243
Period size: 68 Copynumber: 3.3 Consensus size: 68
8694415 ATTTTAATCG
8694425 TTTAATATTAAATTTAATTCAGTACTTATCTTAATAGTATTTTATTAATTTAATATTAAAGTGAT
1 TTTAATATTAAATTTAATTCAGTACTTATCTTAATAGTATTTTATTAATTTAATATTAAAGTGAT
8694490 TAT
66 TAT
* * * * * * *** *
8694493 TTTAATATTTAATTTAATTTAATATTTATGTT-ATA-CATAAACATT-ATATT-AT-TTTAA-T-
1 TTTAATATTAAATTTAATTCAGTACTTATCTTAATAGTAT-TTTATTAAT-TTAATATTAAAGTG
**
8694551 AAGA-
64 ATTAT
8694555 TTTAATATTAAATTTAATTCAGTACTTATCTTAATAGTATTTTATTAATTTAATATTAAAGTGAT
1 TTTAATATTAAATTTAATTCAGTACTTATCTTAATAGTATTTTATTAATTTAATATTAAAGTGAT
8694620 TAT
66 TAT
*
8694623 TTTAATATTTAATTTAATT
1 TTTAATATTAAATTTAATT
8694642 TAATATTTAT
Statistics
Matches: 114, Mismatches: 25, Indels: 20
0.72 0.16 0.13
Matches are distributed among these distances:
62 27 0.24
63 10 0.09
64 7 0.06
65 8 0.07
66 7 0.06
67 10 0.09
68 45 0.39
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.53
Consensus pattern (68 bp):
TTTAATATTAAATTTAATTCAGTACTTATCTTAATAGTATTTTATTAATTTAATATTAAAGTGAT
TAT
Found at i:8694562 original size:62 final size:62
Alignment explanation
Indices: 8694493--8694713 Score: 230
Period size: 62 Copynumber: 3.5 Consensus size: 62
8694483 AAGTGATTAT
*
8694493 TTTAATATTTAATTTAATTTAATATTTATGTTATACATAAACATTATATTATTTTAATAAGA
1 TTTAATATTAAATTTAATTTAATATTTATGTTATACATAAACATTATATTATTTTAATAAGA
* * * * * *** *
8694555 TTTAATATTAAATTTAATTCAGTACTTATCTTAATA-GTATTTTATTA-ATTTAATATTAAAGTG
1 TTTAATATTAAATTTAATTTAATATTTATGTT-ATACATA-AACATTATA-TT-AT-TTTAA-T-
**
8694618 ATTA
59 AAGA
*
8694622 TTTTAATATTTAATTTAATTTAATATTTATGTTATACATAAACATTATATTATTTTAATAAGA
1 -TTTAATATTAAATTTAATTTAATATTTATGTTATACATAAACATTATATTATTTTAATAAGA
*
8694685 TTTAATATTAAATTTAATCTAATATTTAT
1 TTTAATATTAAATTTAATTTAATATTTAT
8694714 CTTGATAAAT
Statistics
Matches: 123, Mismatches: 26, Indels: 20
0.73 0.15 0.12
Matches are distributed among these distances:
62 57 0.46
63 11 0.09
64 3 0.02
65 8 0.07
66 3 0.02
67 11 0.09
68 30 0.24
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52
Consensus pattern (62 bp):
TTTAATATTAAATTTAATTTAATATTTATGTTATACATAAACATTATATTATTTTAATAAGA
Found at i:8694611 original size:130 final size:130
Alignment explanation
Indices: 8694410--8694748 Score: 567
Period size: 130 Copynumber: 2.6 Consensus size: 130
8694400 TTCAAAAATA
*
8694410 ATATTATTTTAAT-CG-TTTAATATTAAATTTAATTCAGTACTTATCTTAATAGTATTTTATTAA
1 ATATTATTTTAATAAGATTTAATATTAAATTTAATTCAGTACTTATCTTAATAGTATTTTATTAA
8694473 TTTAATATTAAAGTGATTATTTTAATATTTAATTTAATTTAATATTTATGTTATACATAAACATT
66 TTTAATATTAAAGTGATTATTTTAATATTTAATTTAATTTAATATTTATGTTATACATAAACATT
8694538 ATATTATTTTAATAAGATTTAATATTAAATTTAATTCAGTACTTATCTTAATAGTATTTTATTAA
1 ATATTATTTTAATAAGATTTAATATTAAATTTAATTCAGTACTTATCTTAATAGTATTTTATTAA
8694603 TTTAATATTAAAGTGATTATTTTAATATTTAATTTAATTTAATATTTATGTTATACATAAACATT
66 TTTAATATTAAAGTGATTATTTTAATATTTAATTTAATTTAATATTTATGTTATACATAAACATT
* * * * *
8694668 ATATTATTTTAATAAGATTTAATATTAAATTTAA-TCTAATATTTATCTTGATAAATATTATATT
1 ATATTATTTTAATAAGATTTAATATTAAATTTAATTC-AGTACTTATCTTAAT-AGTATTTTATT
**
8694732 AATTTCTTATTAAAGTG
64 AATTTAATATTAAAGTG
8694749 TTTAAGTGTA
Statistics
Matches: 199, Mismatches: 8, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
128 13 0.07
129 3 0.02
130 159 0.80
131 24 0.12
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.52
Consensus pattern (130 bp):
ATATTATTTTAATAAGATTTAATATTAAATTTAATTCAGTACTTATCTTAATAGTATTTTATTAA
TTTAATATTAAAGTGATTATTTTAATATTTAATTTAATTTAATATTTATGTTATACATAAACATT
Found at i:8701713 original size:17 final size:19
Alignment explanation
Indices: 8701665--8701714 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
8701655 AATAGTATAT
8701665 TATTAATTTTAATATTAAGA
1 TATT-ATTTTAATATTAAGA
*
8701685 TGATTATCTTAATATTAA-A
1 T-ATTATTTTAATATTAAGA
8701704 T-TTATTTTAAT
1 TATTATTTTAAT
8701715 GTTTATCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 9 0.33
19 2 0.07
20 13 0.48
21 3 0.11
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (19 bp):
TATTATTTTAATATTAAGA
Found at i:8704158 original size:16 final size:16
Alignment explanation
Indices: 8704137--8704168 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8704127 TTCATCACAC
*
8704137 TTAGGTTAATTTGCAT
1 TTAGGTTAACTTGCAT
8704153 TTAGGTTAACTTGCAT
1 TTAGGTTAACTTGCAT
8704169 CTAGATAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.09, G:0.19, T:0.47
Consensus pattern (16 bp):
TTAGGTTAACTTGCAT
Found at i:8704986 original size:22 final size:22
Alignment explanation
Indices: 8704952--8704996 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
8704942 AGAAAACCCT
*
8704952 AGAAAAGTGTAGAGAAAAACTAA
1 AGAAAACTGTAGAG-AAAACTAA
8704975 AGAAAACT-TAGAGAAAACTAA
1 AGAAAACTGTAGAGAAAACTAA
8704996 A
1 A
8704997 CCTAAAACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 5 0.24
23 7 0.33
ACGTcount: A:0.62, C:0.07, G:0.18, T:0.13
Consensus pattern (22 bp):
AGAAAACTGTAGAGAAAACTAA
Found at i:8705520 original size:19 final size:19
Alignment explanation
Indices: 8705498--8705533 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8705488 TTATTACCCA
8705498 AAAAAT-ATAAAAAAATAC
1 AAAAATAATAAAAAAATAC
*
8705516 AAAAATAATGAAAAAATA
1 AAAAATAATAAAAAAATA
8705534 GGCTAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.17
Consensus pattern (19 bp):
AAAAATAATAAAAAAATAC
Found at i:8709020 original size:6 final size:6
Alignment explanation
Indices: 8709009--8709034 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8708999 CATTTTGTGC
8709009 TTGCTT TTGCTT TTGCTT TTGCTT TT
1 TTGCTT TTGCTT TTGCTT TTGCTT TT
8709035 ACTGCAGCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.15, T:0.69
Consensus pattern (6 bp):
TTGCTT
Found at i:8720759 original size:14 final size:15
Alignment explanation
Indices: 8720735--8720763 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8720725 GTAAACCTTC
8720735 TATCATTTGCCATAG
1 TATCATTTGCCATAG
8720750 TATC-TTTGCCATAG
1 TATCATTTGCCATAG
8720764 CATTTTTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (15 bp):
TATCATTTGCCATAG
Found at i:8721866 original size:15 final size:16
Alignment explanation
Indices: 8721843--8721887 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
8721833 TTAATTATAA
8721843 TTAACTTAATTAATCT
1 TTAACTTAATTAATCT
* *
8721859 TTAA-TTAAGTAAACT
1 TTAACTTAATTAATCT
*
8721874 TAAACTTAATTAAT
1 TTAACTTAATTAAT
8721888 ATATTTGGTG
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.44
Consensus pattern (16 bp):
TTAACTTAATTAATCT
Found at i:8725103 original size:4 final size:4
Alignment explanation
Indices: 8725094--8725223 Score: 217
Period size: 4 Copynumber: 32.8 Consensus size: 4
8725084 GAGAAGTTGT
8725094 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
8725142 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
8725190 TGTA TGT- GGTA TGTA CGTA TGTG TGTG TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
8725224 GTGTGTGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
3 2 0.02
4 117 0.98
ACGTcount: A:0.22, C:0.01, G:0.28, T:0.49
Consensus pattern (4 bp):
TGTA
Found at i:8725216 original size:2 final size:2
Alignment explanation
Indices: 8725209--8725251 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
8725199 TATGTACGTA
*
8725209 TG TG TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
8725251 T
1 T
8725252 TTCTTGTGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.02, C:0.00, G:0.47, T:0.51
Consensus pattern (2 bp):
TG
Found at i:8728468 original size:19 final size:19
Alignment explanation
Indices: 8728444--8728583 Score: 99
Period size: 19 Copynumber: 7.5 Consensus size: 19
8728434 TAGCACATAT
*
8728444 AGTGCATATTGGCGCACAA
1 AGTGCATATTGGCACACAA
* *
8728463 AGTGCATCTTGGCCCAC-A
1 AGTGCATATTGGCACACAA
* * * *
8728481 AGCGCATACTAGCACACGA
1 AGTGCATATTGGCACACAA
* * * *
8728500 AGTGCATACTAGCGCA-TA
1 AGTGCATATTGGCACACAA
*
8728518 AGCGCAT-TCCTGGCACACAA
1 AGTGCATAT--TGGCACACAA
* * *
8728538 AGTGCATACTAGCACA-TA
1 AGTGCATATTGGCACACAA
8728556 AGTGCATATTGGCACACAA
1 AGTGCATATTGGCACACAA
8728575 AGTGCATAT
1 AGTGCATAT
8728584 ACCTGTATAG
Statistics
Matches: 93, Mismatches: 22, Indels: 12
0.73 0.17 0.09
Matches are distributed among these distances:
18 35 0.38
19 51 0.55
20 7 0.08
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (19 bp):
AGTGCATATTGGCACACAA
Found at i:8728521 original size:37 final size:37
Alignment explanation
Indices: 8728432--8728582 Score: 160
Period size: 37 Copynumber: 4.0 Consensus size: 37
8728422 AGTAAGGGAA
* * *
8728432 ACTAGCACATATAGTGCATATTGGCGCACAAAGTGCAT
1 ACTAGCACATA-AGCGCATACTGGCACACAAAGTGCAT
* * * * *
8728470 -CTTGGCCCACAAGCGCATACTAGCACACGAAGTGCAT
1 AC-TAGCACATAAGCGCATACTGGCACACAAAGTGCAT
* *
8728507 ACTAGCGCATAAGCGCATTCCTGGCACACAAAGTGCAT
1 ACTAGCACATAAGCGCA-TACTGGCACACAAAGTGCAT
* *
8728545 ACTAGCACATAAGTGCATATTGGCACACAAAGTGCAT
1 ACTAGCACATAAGCGCATACTGGCACACAAAGTGCAT
8728582 A
1 A
8728583 TACCTGTATA
Statistics
Matches: 92, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
37 53 0.58
38 39 0.42
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.20
Consensus pattern (37 bp):
ACTAGCACATAAGCGCATACTGGCACACAAAGTGCAT
Found at i:8729691 original size:45 final size:46
Alignment explanation
Indices: 8729627--8729717 Score: 166
Period size: 47 Copynumber: 2.0 Consensus size: 46
8729617 ATAATTTGAG
8729627 TTTATTATGAATA-TTTTTTTGTGTATGTATCATAACTGATAAAAA
1 TTTATTATGAATATTTTTTTTGTGTATGTATCATAACTGATAAAAA
8729672 TTTATTATGAATATTTTTTTTTGTGTATGTATCATAACTGATAAAA
1 TTTATTATGAATA-TTTTTTTTGTGTATGTATCATAACTGATAAAA
8729718 GTACCCTTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
45 13 0.30
47 31 0.70
ACGTcount: A:0.34, C:0.04, G:0.11, T:0.51
Consensus pattern (46 bp):
TTTATTATGAATATTTTTTTTGTGTATGTATCATAACTGATAAAAA
Found at i:8744356 original size:21 final size:20
Alignment explanation
Indices: 8744323--8744448 Score: 60
Period size: 21 Copynumber: 6.2 Consensus size: 20
8744313 TTTTAGAATT
*
8744323 AAAAATATAAAAAATTATTA
1 AAAAATATAAAAAATTATAA
* *
8744343 AAAAATCATTAAAATTTATAA
1 AAAAAT-ATAAAAAATTATAA
* *
8744364 AAAAATTTAGAAATAAAT-TAA
1 AAAAATATA-AAA-AATTATAA
* **
8744385 AAACA-ATAAAATTTTAT-A
1 AAAAATATAAAAAATTATAA
** *
8744403 AAATTTATAAAATAATTTATTA
1 AAAAATATAAAA-AA-TTATAA
** *
8744425 AAAACCATAAAAAATTAGAA
1 AAAAATATAAAAAATTATAA
8744445 AAAA
1 AAAA
8744449 TAATTTATAA
Statistics
Matches: 77, Mismatches: 21, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
18 5 0.06
19 10 0.13
20 17 0.22
21 33 0.43
22 12 0.16
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAAATATAAAAAATTATAA
Found at i:8744369 original size:41 final size:41
Alignment explanation
Indices: 8744323--8744450 Score: 106
Period size: 41 Copynumber: 3.2 Consensus size: 41
8744313 TTTTAGAATT
*
8744323 AAAAATATAAAA-AATTATTAAAAAATCATTAAAA-TTTATAA
1 AAAAATATAAAATAATTATTAAAAAA-CAATAAAATTTTAT-A
*
8744364 AAAAATTTAGAAATAA--ATT-AAAAACAATAAAATTTTATA
1 AAAAATATA-AAATAATTATTAAAAAACAATAAAATTTTATA
** * ** *
8744403 AAATTTATAAAATAATTTATT-AAAAACCATAAAAAATTAGA
1 AAAAATATAAAATAA-TTATTAAAAAACAATAAAATTTTATA
8744444 AAAAATA
1 AAAAATA
8744451 ATTTATAAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
38 6 0.09
39 14 0.20
40 10 0.14
41 35 0.50
42 3 0.04
43 2 0.03
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (41 bp):
AAAAATATAAAATAATTATTAAAAAACAATAAAATTTTATA
Found at i:8754959 original size:20 final size:19
Alignment explanation
Indices: 8754904--8754948 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
8754894 CATTTCATTG
*
8754904 AGCTCCAATTAGCTCATTTCC
1 AGCTCC-ATGAGCTCATTT-C
*
8754925 AGCTCCATGAACTCATTTC
1 AGCTCCATGAGCTCATTTC
8754944 AGCTC
1 AGCTC
8754949 ATTTGAGCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 10 0.45
21 6 0.27
ACGTcount: A:0.24, C:0.33, G:0.11, T:0.31
Consensus pattern (19 bp):
AGCTCCATGAGCTCATTTC
Found at i:8766366 original size:50 final size:50
Alignment explanation
Indices: 8766286--8766403 Score: 130
Period size: 50 Copynumber: 2.4 Consensus size: 50
8766276 CAATGCCATA
* * ** * **
8766286 TCCCAGATATGGTCTTTCATGGGAGTTCTCATATCGGTGCCCATTACATG
1 TCCCAGATATGGTCTTACAGGGGACCTCTCATATCGGTGCCAACGACATG
* * *
8766336 TCCCAGATATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGATATGGTCTTACAGGGGACCTCTCATATCGGTGCCAACGACATG
8766386 TCCCAGACT-TGGTCTTAC
1 TCCCAGA-TATGGTCTTAC
8766404 TTGGGATCTC
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 56 0.98
51 1 0.02
ACGTcount: A:0.19, C:0.29, G:0.23, T:0.30
Consensus pattern (50 bp):
TCCCAGATATGGTCTTACAGGGGACCTCTCATATCGGTGCCAACGACATG
Found at i:8773529 original size:12 final size:12
Alignment explanation
Indices: 8773503--8773541 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
8773493 CGTTTCTTCT
* *
8773503 TTACTTACTTTC
1 TTACTTGCTTAC
*
8773515 TTACTTGTTTAC
1 TTACTTGCTTAC
8773527 TTACTTGCTTAC
1 TTACTTGCTTAC
8773539 TTA
1 TTA
8773542 AATAACTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.18, C:0.21, G:0.05, T:0.56
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:8776330 original size:14 final size:15
Alignment explanation
Indices: 8776297--8776331 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
8776287 GGACAAAAGA
8776297 GAAAAGAGAAATTGG
1 GAAAAGAGAAATTGG
8776312 GAAAAGAGAAATT-G
1 GAAAAGAGAAATTGG
8776326 GAAAAG
1 GAAAAG
8776332 TGGGTAGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.57, C:0.00, G:0.31, T:0.11
Consensus pattern (15 bp):
GAAAAGAGAAATTGG
Found at i:8784650 original size:13 final size:13
Alignment explanation
Indices: 8784632--8784657 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8784622 ACTCAATCCC
8784632 GCGTTCAATCCAA
1 GCGTTCAATCCAA
8784645 GCGTTCAATCCAA
1 GCGTTCAATCCAA
8784658 ACTGAGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (13 bp):
GCGTTCAATCCAA
Found at i:8784813 original size:19 final size:20
Alignment explanation
Indices: 8784771--8784813 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
8784761 TCATGCTTTC
*
8784771 TATTCACATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
8784791 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
8784809 TATTC
1 TATTC
8784814 CACTTAGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:8785049 original size:51 final size:50
Alignment explanation
Indices: 8784990--8785174 Score: 167
Period size: 51 Copynumber: 3.7 Consensus size: 50
8784980 CCGGTTCACA
* * *
8784990 TAGTAGCCTGTACATAGTACTACACATGTGA-CCATTTCTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCCA--TCTATCTGATACACG
** * * *
8785041 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATCTGATACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCCATCTATCTGATACACG
** * ** * *
8785092 TAGTAGCCTGCACATAGCGCTACACATGCAACCCATC-ATTCTGGTACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCCATCTA-TCTGATACACG
* *
8785142 TAGTAGCCTGTACATAATACTACACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACACGTGACC
8785175 ATCACTTTCA
Statistics
Matches: 104, Mismatches: 27, Indels: 7
0.75 0.20 0.05
Matches are distributed among these distances:
49 1 0.01
50 36 0.35
51 66 0.63
53 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCCATCTATCTGATACACG
Found at i:8791604 original size:413 final size:410
Alignment explanation
Indices: 8790793--8791614 Score: 1365
Period size: 413 Copynumber: 2.0 Consensus size: 410
8790783 TTACACGGCC
*
8790793 TAGCATACGGCCTAGCACACGAGTGTGTGGCTTGACCGTGTAACCCAAGTTAGAGAGTCACACAA
1 TAGCATACGGCCTAGCACACGAGTGTGTGGCTTGACCGTGTAACCCAAGTCAGAGAGTCACACAA
8790858 GCACAGACACAGGTGGGACACGGACGTGTGTCCCTATTTCAAATGTTACATGACCTGTGACACAG
66 GCACAGACACAGGTGGGACACGGACGTGTGTCCCTATTTCAAATGTTACATGACCTGTGACACAG
* * * *
8790923 ACGTGTGTCTCAGCCGTGTGAGGCACACGATCGTGTGACCCCAGTAGTGTGAATTTTTTTAACTT
131 ACGTGTGTCTCAGCCATGTGAGGCACACGACCATGTGACCCCAGCAGTGTGAATTTTTTTAACTT
**
8790988 TTTCCTTAAGGTTTTATATGTTCCCGATTTAGTCTTGAATCATTTCTAAAGTATTTCTAAGGCCT
196 TTTCCTTAAGGTTTTATACATTCCCGATTTAGTCTTGAATCATTTCTAAAGTATTTCTAAGGCCT
** *
8791053 CAAGGGCTCAAATAAGGGACGAATGCATGTATTTGAATGGATTTTTTTATGATTATGAAATGTTT
261 CAAGGGCTCAAATAAGGGACGAATGCATGTATTTGAATCAATTTTTCTATGATTATGAAATGTTT
* *
8791118 GGAAATTAATGATTTTAATTTATGTTTTTATGGTAATGCTCCATAACCCTATTCCAGCAATAGAT
326 GGAAATTAATGATATTAATTTATGTTTTTATGGTAATGCTCCATAACCCTATTCCAACAATAGAT
*
8791183 ACAGGTTAGATCCCACCATT
391 AAAGGTTAGATCCCACCATT
* * * *
8791203 TAGCATACGGCCTGGCACACGGGTGTGTGGCTTGACCGTGTGACCCAAGTCAGAGAGTCACACGA
1 TAGCATACGGCCTAGCACACGAGTGTGTGGCTTGACCGTGTAACCCAAGTCAGAGAGTCACACAA
*
8791268 GCACGGACACAGGCTGGGACACGGACGTGTGTCCCTATTTCAAATGTTACATGACCTGTGACACA
66 GCACAGACACAGG-TGGGACACGGACGTGTGTCCCTATTTCAAATGTTACATGACCTGTGACACA
* * * *
8791333 GGCGTGTGTCTCAGCCATGTGAGGCATACGGCCATGTGACCCCCGCAGTGTGAATTTTTTTCAAC
130 GACGTGTGTCTCAGCCATGTGAGGCACACGACCATGTGACCCCAGCAGTGTGAATTTTTTT-AAC
* *
8791398 TTTTTCCTTAAGGTTTTATACATTCCCGATTTAGTCTTGAATCGTTTCTAAAGTGTTTCTAAGGC
194 TTTTTCCTTAAGGTTTTATACATTCCCGATTTAGTCTTGAATCATTTCTAAAGTATTTCTAAGGC
* * *
8791463 TTCGAGGGCTCGAATAAGGGACGATATGCATGTATTTGAATCAATTTTTCTATGATTATGAAATG
259 CTCAAGGGCTCAAATAAGGGACGA-ATGCATGTATTTGAATCAATTTTTCTATGATTATGAAATG
*
8791528 TTTGGAAATTAATGATATTAATTTATGTTTTTATGGTAATGCTCCGTAACCCTATTCCAACAATA
323 TTTGGAAATTAATGATATTAATTTATGTTTTTATGGTAATGCTCCATAACCCTATTCCAACAATA
8791593 GATAAAGGTTAGATCCCACCAT
388 GATAAAGGTTAGATCCCACCAT
8791615 AGATATGCCT
Statistics
Matches: 381, Mismatches: 28, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
410 72 0.19
411 104 0.27
412 85 0.22
413 120 0.31
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (410 bp):
TAGCATACGGCCTAGCACACGAGTGTGTGGCTTGACCGTGTAACCCAAGTCAGAGAGTCACACAA
GCACAGACACAGGTGGGACACGGACGTGTGTCCCTATTTCAAATGTTACATGACCTGTGACACAG
ACGTGTGTCTCAGCCATGTGAGGCACACGACCATGTGACCCCAGCAGTGTGAATTTTTTTAACTT
TTTCCTTAAGGTTTTATACATTCCCGATTTAGTCTTGAATCATTTCTAAAGTATTTCTAAGGCCT
CAAGGGCTCAAATAAGGGACGAATGCATGTATTTGAATCAATTTTTCTATGATTATGAAATGTTT
GGAAATTAATGATATTAATTTATGTTTTTATGGTAATGCTCCATAACCCTATTCCAACAATAGAT
AAAGGTTAGATCCCACCATT
Found at i:8793708 original size:39 final size:39
Alignment explanation
Indices: 8793660--8793746 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
8793650 CATAGGTATT
8793660 GAAGTACAACAAGGGCACGTATGTGCATTCAAGGGTACC
1 GAAGTACAACAAGGGCACGTATGTGCATTCAAGGGTACC
* * *
8793699 GAAGTACAACAGGGGCACGTATGTGCATTTAGGGGTACC
1 GAAGTACAACAAGGGCACGTATGTGCATTCAAGGGTACC
8793738 GAAGTACAA
1 GAAGTACAA
8793747 TACGGTATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.33, C:0.18, G:0.30, T:0.18
Consensus pattern (39 bp):
GAAGTACAACAAGGGCACGTATGTGCATTCAAGGGTACC
Found at i:8803795 original size:33 final size:34
Alignment explanation
Indices: 8803747--8803813 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 34
8803737 AAAATAAATG
8803747 TAGTTCAGCTCAAATAAGTGTTAG-AATTAATTT
1 TAGTTCAGCTCAAATAAGTGTTAGTAATTAATTT
* *
8803780 TAGTTTAGCTTAAATAAGTGTTAGTAATTAATTT
1 TAGTTCAGCTCAAATAAGTGTTAGTAATTAATTT
8803814 GTTTAAATCT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 22 0.71
34 9 0.29
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.43
Consensus pattern (34 bp):
TAGTTCAGCTCAAATAAGTGTTAGTAATTAATTT
Found at i:8819459 original size:31 final size:31
Alignment explanation
Indices: 8819423--8819484 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
8819413 TTAGCTGAAT
*
8819423 GTGGATTTTCATCATTAAAAAGGCCATCCGA
1 GTGGATTTTCATCATTAAAAAGGCCAGCCGA
*
8819454 GTGGATTTTCATCATTCAAAAGGCCAGCCGA
1 GTGGATTTTCATCATTAAAAAGGCCAGCCGA
8819485 ACCATCCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (31 bp):
GTGGATTTTCATCATTAAAAAGGCCAGCCGA
Found at i:8821243 original size:17 final size:17
Alignment explanation
Indices: 8821213--8821255 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
8821203 GATAAAGAAT
* *
8821213 GAAAAAGAACAAGAAAA
1 GAAAATGAAAAAGAAAA
8821230 GAAAATGAAAAAGAAAA
1 GAAAATGAAAAAGAAAA
*
8821247 -AAATTGAAA
1 GAAAATGAAA
8821256 TAAAAGAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.74, C:0.02, G:0.16, T:0.07
Consensus pattern (17 bp):
GAAAATGAAAAAGAAAA
Found at i:8824992 original size:19 final size:17
Alignment explanation
Indices: 8824956--8824994 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
8824946 TCAGTTGCTG
8824956 ATTAGTTAAATAAATTA
1 ATTAGTTAAATAAATTA
*
8824973 ATTAGCTTAAGATTAATTA
1 ATTAG-TTAA-ATAAATTA
8824992 ATT
1 ATT
8824995 TAATAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
19 10 0.53
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.44
Consensus pattern (17 bp):
ATTAGTTAAATAAATTA
Found at i:8827166 original size:21 final size:21
Alignment explanation
Indices: 8827142--8827182 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8827132 AAACGAAAAA
8827142 GAAGAAGAAGAAA-AAAAAAGT
1 GAAGAAGAA-AAAGAAAAAAGT
8827163 GAAGAAGAAAAAGAAAAAAG
1 GAAGAAGAAAAAGAAAAAAG
8827183 AAATTGCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.02
Consensus pattern (21 bp):
GAAGAAGAAAAAGAAAAAAGT
Found at i:8827167 original size:24 final size:25
Alignment explanation
Indices: 8827139--8827220 Score: 87
Period size: 24 Copynumber: 3.2 Consensus size: 25
8827129 TAAAAACGAA
*
8827139 AAAGAAGAAGAAGAAAAAAAAAGTG
1 AAAGAAGAAAAAGAAAAAAAAAGTG
*
8827164 -AAGAAGAAAAAGAAAAAAGAAATTG
1 AAAGAAGAAAAAGAAAAAA-AAAGTG
* *
8827189 CAA-AAGAAAAAGAAATCGAAAAAGTG
1 AAAGAAGAAAAAGAAA--AAAAAAGTG
8827215 AAAGAA
1 AAAGAA
8827221 AAAGAAAACG
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
24 17 0.36
25 17 0.36
26 9 0.19
27 4 0.09
ACGTcount: A:0.71, C:0.02, G:0.21, T:0.06
Consensus pattern (25 bp):
AAAGAAGAAAAAGAAAAAAAAAGTG
Found at i:8827178 original size:6 final size:6
Alignment explanation
Indices: 8827130--8827254 Score: 70
Period size: 6 Copynumber: 19.5 Consensus size: 6
8827120 ACATTGTAAT
* * *
8827130 AAAAACG AAAAAG AAGAAG AAGAAAA AAAAAGTG AAGAAG AAAAAG AAAAAAG
1 AAAAA-G AAAAAG AAAAAG AA-AAAG AAAAA--G AAAAAG AAAAAG -AAAAAG
** * ** ** *
8827183 AAATTG CAAAAG AAAAAG AAATCG AAAAAG TGAAAG AAAAAG AAAACG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
*
8827231 AAGAAAAG AAAATTG AAAAAG AAA
1 -A-AAAAG AAAA-AG AAAAAG AAA
8827255 TTGAGATTGA
Statistics
Matches: 87, Mismatches: 24, Indels: 15
0.69 0.19 0.12
Matches are distributed among these distances:
6 57 0.66
7 22 0.25
8 8 0.09
ACGTcount: A:0.72, C:0.03, G:0.19, T:0.06
Consensus pattern (6 bp):
AAAAAG
Found at i:8827211 original size:18 final size:18
Alignment explanation
Indices: 8827169--8827303 Score: 84
Period size: 18 Copynumber: 7.6 Consensus size: 18
8827159 AAGTGAAGAA
8827169 GAAAAAGAAAAAAGAAATT
1 GAAAAAG-AAAAAGAAATT
* *
8827188 GCAAAAGAAAAAGAAATC
1 GAAAAAGAAAAAGAAATT
** **
8827206 GAAAAAGTGAAAGAAAAA
1 GAAAAAGAAAAAGAAATT
*
8827224 GAAAACGAAGAAAAGAAAATT
1 GAAAAAG-A-AAAAG-AAATT
** *
8827245 GAAAAAGAAATTGAGATT
1 GAAAAAGAAAAAGAAATT
8827263 G----AG-AAAA-AAATT
1 GAAAAAGAAAAAGAAATT
**
8827275 GAAAAAGAAAAAGATGTT
1 GAAAAAGAAAAAGAAATT
8827293 GAAAAAGAAAA
1 GAAAAAGAAAA
8827304 GAGAGAAAAT
Statistics
Matches: 86, Mismatches: 21, Indels: 19
0.68 0.17 0.15
Matches are distributed among these distances:
12 5 0.06
13 2 0.02
14 2 0.02
16 2 0.02
17 4 0.05
18 48 0.56
19 9 0.10
20 5 0.06
21 9 0.10
ACGTcount: A:0.67, C:0.02, G:0.19, T:0.11
Consensus pattern (18 bp):
GAAAAAGAAAAAGAAATT
Found at i:8827249 original size:51 final size:51
Alignment explanation
Indices: 8827156--8827255 Score: 127
Period size: 51 Copynumber: 2.0 Consensus size: 51
8827146 AAGAAGAAAA
*
8827156 AAAAAGTGAAGAAGAAAAAGAAAAAAGAAATTGCAAAAGAAAAAGAAATCG
1 AAAAAGTGAAGAAGAAAAAGAAAAAAGAAATAGCAAAAGAAAAAGAAATCG
8827207 AAAAAGTG-A-AAGAAAAAGAAAACGAAGAAA-AG-AAAATTGAAAAAGAAAT
1 AAAAAGTGAAGAAGAAAAAGAAAA--AAGAAATAGCAAAA--GAAAAAGAAAT
8827256 TGAGATTGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
49 17 0.39
50 2 0.05
51 25 0.57
ACGTcount: A:0.70, C:0.03, G:0.19, T:0.08
Consensus pattern (51 bp):
AAAAAGTGAAGAAGAAAAAGAAAAAAGAAATAGCAAAAGAAAAAGAAATCG
Found at i:8832925 original size:18 final size:18
Alignment explanation
Indices: 8832904--8832938 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8832894 TTTTTCTCTT
8832904 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
8832922 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
8832939 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:8835096 original size:27 final size:28
Alignment explanation
Indices: 8835054--8835123 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
8835044 ACTTTTAATG
8835054 CATG-TTTTAATATGTCATAGT-TAGTA
1 CATGTTTTTAATATGTCATAGTCTAGTA
* * *
8835080 CATGTTTTTAATTTGTCTTAGTCTATTA
1 CATGTTTTTAATATGTCATAGTCTAGTA
8835108 CATGTTTTTAATATGT
1 CATGTTTTTAATATGT
8835124 TCTTGTTTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 4 0.11
27 15 0.39
28 19 0.50
ACGTcount: A:0.26, C:0.09, G:0.13, T:0.53
Consensus pattern (28 bp):
CATGTTTTTAATATGTCATAGTCTAGTA
Found at i:8838033 original size:15 final size:15
Alignment explanation
Indices: 8837998--8838049 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
8837988 CTCACATGCT
*
8837998 TTTTTGCTCTCAATCTC
1 TTTTT-CTCTC-ATTTC
*
8838015 TTTTTGCTCT-TTTTC
1 TTTTT-CTCTCATTTC
8838030 TTTTTCTCTCATTTC
1 TTTTTCTCTCATTTC
8838045 TTTTT
1 TTTTT
8838050 TTCTTTTCTC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
14 4 0.13
15 17 0.55
17 10 0.32
ACGTcount: A:0.06, C:0.23, G:0.04, T:0.67
Consensus pattern (15 bp):
TTTTTCTCTCATTTC
Found at i:8838070 original size:22 final size:23
Alignment explanation
Indices: 8838024--8838070 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
8838014 CTTTTTGCTC
*
8838024 TTTTTCTTTTTCTCTCATTTCTT
1 TTTTTCTTTTTCTCTAATTTCTT
*
8838047 TTTTTC-TTTTCTC-AATTTCAT
1 TTTTTCTTTTTCTCTAATTTCTT
8838068 TTT
1 TTT
8838071 GGATTCATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 9 0.41
22 7 0.32
23 6 0.27
ACGTcount: A:0.09, C:0.19, G:0.00, T:0.72
Consensus pattern (23 bp):
TTTTTCTTTTTCTCTAATTTCTT
Found at i:8840515 original size:3 final size:3
Alignment explanation
Indices: 8840507--8840536 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8840497 AAAGAATGAA
8840507 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8840537 CAAGAATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8843627 original size:24 final size:21
Alignment explanation
Indices: 8843593--8843635 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 21
8843583 GGAAAAACAA
8843593 AAAGAGATTGAAAAAGAAATTG
1 AAAGAGATTG-AAAAGAAATTG
8843615 AAAGAGAACTTGAAAAGAAAT
1 AAAGAG-A-TTGAAAAGAAAT
8843636 CGAGTGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.32
23 10 0.53
24 3 0.16
ACGTcount: A:0.60, C:0.02, G:0.21, T:0.16
Consensus pattern (21 bp):
AAAGAGATTGAAAAGAAATTG
Found at i:8852264 original size:15 final size:15
Alignment explanation
Indices: 8852244--8852274 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8852234 ACATTTCTTA
*
8852244 AGGTTTGTATACAAT
1 AGGTTTGCATACAAT
8852259 AGGTTTGCATACAAT
1 AGGTTTGCATACAAT
8852274 A
1 A
8852275 CTTCCTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (15 bp):
AGGTTTGCATACAAT
Found at i:8857667 original size:21 final size:20
Alignment explanation
Indices: 8857642--8857681 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
8857632 GAGCGAGCTT
*
8857642 ATTGAGCTTGAATTGAGCTAA
1 ATTGAGCTCG-ATTGAGCTAA
8857663 ATTGAGCTCGATTGAGCTA
1 ATTGAGCTCGATTGAGCTA
8857682 GATCAAGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (20 bp):
ATTGAGCTCGATTGAGCTAA
Found at i:8867434 original size:23 final size:21
Alignment explanation
Indices: 8867403--8867465 Score: 72
Period size: 23 Copynumber: 2.9 Consensus size: 21
8867393 TTAGGCTCGG
*
8867403 AATGGTTTAGGATTAGGTATGAA
1 AATGATTTAGG-TTAGGTATG-A
*
8867426 AATGATTTAGGTTTAGGTTTGA
1 AATGATTTAGG-TTAGGTATGA
*
8867448 AGTGATTTAGGTTAGGTA
1 AATGATTTAGGTTAGGTA
8867466 AGATTTGGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 6 0.17
22 11 0.31
23 18 0.51
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.40
Consensus pattern (21 bp):
AATGATTTAGGTTAGGTATGA
Found at i:8867456 original size:22 final size:21
Alignment explanation
Indices: 8867386--8867465 Score: 72
Period size: 22 Copynumber: 3.7 Consensus size: 21
8867376 TCGAAGATGG
** *
8867386 TTTAGGTTTAGGCTCGGAATGG
1 TTTAGGTTTAGG-TATGAATGA
*
8867408 TTTAGGATTAGGTATGAAAATGA
1 TTTAGGTTTAGGTATG--AATGA
*
8867431 TTTAGGTTTAGGTTTGAAGTGA
1 TTTAGGTTTAGGTATGAA-TGA
8867453 TTTAGG-TTAGGTA
1 TTTAGGTTTAGGTA
8867466 AGATTTGGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
21 10 0.21
22 20 0.42
23 18 0.38
ACGTcount: A:0.26, C:0.03, G:0.31, T:0.40
Consensus pattern (21 bp):
TTTAGGTTTAGGTATGAATGA
Found at i:8869191 original size:50 final size:52
Alignment explanation
Indices: 8869085--8869206 Score: 151
Period size: 50 Copynumber: 2.4 Consensus size: 52
8869075 TGAACAAATG
* * *
8869085 AGTTACTTAATGCAAGACTTACTTTAATGATGCAGACTTAAACTAACATGGT
1 AGTTACATAATGCATGACTTACTTTAATGATGCAGACTTAAACTAACATGGA
* * *
8869137 AGTTACATAATGCATGTCATTA-TTT-ATGATGCATACTT-AACTAGCATGGA
1 AGTTACATAATGCATGAC-TTACTTTAATGATGCAGACTTAAACTAACATGGA
*
8869187 AGTTACATAATGCATAACTT
1 AGTTACATAATGCATGACTT
8869207 TATTAAATGC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
49 2 0.03
50 26 0.43
51 12 0.20
52 18 0.30
53 3 0.05
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (52 bp):
AGTTACATAATGCATGACTTACTTTAATGATGCAGACTTAAACTAACATGGA
Found at i:8870854 original size:31 final size:30
Alignment explanation
Indices: 8870819--8870876 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
8870809 ATGCATTATC
*
8870819 TAACTCCTATGTT-AGTTTAAGTTTGCATAAG
1 TAACTCATATGTTCA-TTT-AGTTTGCATAAG
*
8870850 TAACTCATTTGTTCATTTAGTTTGCAT
1 TAACTCATATGTTCATTTAGTTTGCAT
8870877 CCTAAACCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 9 0.38
31 14 0.58
32 1 0.04
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.47
Consensus pattern (30 bp):
TAACTCATATGTTCATTTAGTTTGCATAAG
Found at i:8879090 original size:22 final size:21
Alignment explanation
Indices: 8879065--8879111 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8879055 TTCTTTCATT
8879065 TTTTTAAATCTAATTTTTTTTG
1 TTTTTAAATC-AATTTTTTTTG
***
8879087 TTTTTTTTTCAATTTTTTTTG
1 TTTTTAAATCAATTTTTTTTG
8879108 TTTT
1 TTTT
8879112 GAACCACAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77
Consensus pattern (21 bp):
TTTTTAAATCAATTTTTTTTG
Found at i:8879758 original size:14 final size:14
Alignment explanation
Indices: 8879739--8879765 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8879729 ATGATCTCCC
8879739 CATGCATGAATCTA
1 CATGCATGAATCTA
8879753 CATGCATGAATCT
1 CATGCATGAATCT
8879766 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:8881487 original size:635 final size:635
Alignment explanation
Indices: 8880277--8881547 Score: 2490
Period size: 635 Copynumber: 2.0 Consensus size: 635
8880267 GTTCGAACTC
8880277 CCCATGGTTCACAGGCAAGCTCACATCATTTGGAGTAGGAAAGATTAGCTCCCTTGGCCGAATAG
1 CCCATGGTTCACAGGCAAGCTCACATCATTTGGAGTAGGAAAGATTAGCTCCCTTGGCCGAATAG
8880342 TCAGATAGGAATGTTCAAAATTCAGTTCACCAATTTGATGACATTCCATGCATGTATCGCCAGGT
66 TCAGATAGGAATGTTCAAAATTCAGTTCACCAATTTGATGACATTCCATGCATGTATCGCCAGGT
8880407 ACATTGAACCCATCATGCATGCACCTTGCTTAATGTATTCCCACATTCGGCCAACCTACACAAAG
131 ACATTGAACCCATCATGCATGCACCTTGCTTAATGTATTCCCACATTCGGCCAACCTACACAAAG
8880472 ATGAATGAACTTAAGTAATGCAAAATTCAGCTGAACATAATTAAGAATATAACCTGGACAAATTA
196 ATGAATGAACTTAAGTAATGCAAAATTCAGCTGAACATAATTAAGAATATAACCTGGACAAATTA
8880537 AAAACACATAATTAAAACTAAACACACTTAATTGAATTAAGATAAGACGAATTAAAAACATGCAA
261 AAAACACATAATTAAAACTAAACACACTTAATTGAATTAAGATAAGACGAATTAAAAACATGCAA
8880602 TGACACAAACTTATTTATGAGCTGTAGTAATTAGGACAACTTAATATCATGCAATAAACACAAAT
326 TGACACAAACTTATTTATGAGCTGTAGTAATTAGGACAACTTAATATCATGCAATAAACACAAAT
8880667 TTGATAATGTTTGTCTAGATCTAAACCAATTAAATACCGAATATAAATTGAGCTAAATAAATTAA
391 TTGATAATGTTTGTCTAGATCTAAACCAATTAAATACCGAATATAAATTGAGCTAAATAAATTAA
8880732 CATATTAATTTATTTCAGCAACTATGTAATTGGATAAATGAAATTGAGCTGAAACAAAAATTATC
456 CATATTAATTTATTTCAGCAACTATGTAATTGGATAAATGAAATTGAGCTGAAACAAAAATTATC
*
8880797 GAGCTGAAATTGAGCTAGTTCGAGCTCTTGGAGCTGGAAGTGAGCTAAATGGAGCTCAACGAGAT
521 GAGCTGAAATTGAGCTAGTTCGAGCTCTTGGAGCTGGAAATGAGCTAAATGGAGCTCAACGAGA-
8880862 TGG-ATTGAACTAATTCAGCTCGCATGGGTTTGCAAGCAATGCTTAGGGAG
585 TGGAATTGAACTAATTCAGCTCGCATGGGTTTGCAAGCAATGCTTAGGGAG
8880912 CCCATGGTTCACAGGCAAGCTCACATCATTTGGAGTAGGAAAGATTAGCTCCCTTGGCCGAATAG
1 CCCATGGTTCACAGGCAAGCTCACATCATTTGGAGTAGGAAAGATTAGCTCCCTTGGCCGAATAG
8880977 TCAGATAGGAATGTTCAAAATTCAGTTCACCAATTTGATGACATTCCATGCATGTATCGCCAGGT
66 TCAGATAGGAATGTTCAAAATTCAGTTCACCAATTTGATGACATTCCATGCATGTATCGCCAGGT
8881042 ACATTGAACCCATCATGCATGCACCTTGCTTAATGTATTCCCACATTCGGCCAACCTACACAAAG
131 ACATTGAACCCATCATGCATGCACCTTGCTTAATGTATTCCCACATTCGGCCAACCTACACAAAG
8881107 ATGAATGAACTTAAGTAATGCAAAATTCAGCTGAACATAATTAAGAATATAACCTGGACAAATTA
196 ATGAATGAACTTAAGTAATGCAAAATTCAGCTGAACATAATTAAGAATATAACCTGGACAAATTA
8881172 AAAACACATAATTAAAACTAAACACACTTAATTGAATTAAGATAAGACGAATTAAAAACATGCAA
261 AAAACACATAATTAAAACTAAACACACTTAATTGAATTAAGATAAGACGAATTAAAAACATGCAA
8881237 TGACACAAACTTATTTATGAGCTGTAGTAATTAGGACAACTTAATATCATGCAATAAACACAAAT
326 TGACACAAACTTATTTATGAGCTGTAGTAATTAGGACAACTTAATATCATGCAATAAACACAAAT
8881302 TTGATAATGTTTGTCTAGATCTAAACCAATTAAATACCGAATATAAATTGAGCTAAATAAATTAA
391 TTGATAATGTTTGTCTAGATCTAAACCAATTAAATACCGAATATAAATTGAGCTAAATAAATTAA
8881367 CATATTAATTTATTTCAGCAACTATGTAATTGGATAAATGAAATTGAGCTGAAACAAAAATTATC
456 CATATTAATTTATTTCAGCAACTATGTAATTGGATAAATGAAATTGAGCTGAAACAAAAATTATC
* *
8881432 GAGCTGAAATTGAGCTAGTTCGAGCTCTTGGAGCTGGAAATGAGTTTAATGGAGCTCAACGAGAT
521 GAGCTGAAATTGAGCTAGTTCGAGCTCTTGGAGCTGGAAATGAGCTAAATGGAGCTCAACGAGAT
*
8881497 GGAATTGAATTAATTCAGCTCGCATGGGTTTGCAAGCAATGCTTAGGGAG
586 GGAATTGAACTAATTCAGCTCGCATGGGTTTGCAAGCAATGCTTAGGGAG
8881547 C
1 C
8881548 TGGTCCAAAA
Statistics
Matches: 631, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
634 3 0.00
635 628 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (635 bp):
CCCATGGTTCACAGGCAAGCTCACATCATTTGGAGTAGGAAAGATTAGCTCCCTTGGCCGAATAG
TCAGATAGGAATGTTCAAAATTCAGTTCACCAATTTGATGACATTCCATGCATGTATCGCCAGGT
ACATTGAACCCATCATGCATGCACCTTGCTTAATGTATTCCCACATTCGGCCAACCTACACAAAG
ATGAATGAACTTAAGTAATGCAAAATTCAGCTGAACATAATTAAGAATATAACCTGGACAAATTA
AAAACACATAATTAAAACTAAACACACTTAATTGAATTAAGATAAGACGAATTAAAAACATGCAA
TGACACAAACTTATTTATGAGCTGTAGTAATTAGGACAACTTAATATCATGCAATAAACACAAAT
TTGATAATGTTTGTCTAGATCTAAACCAATTAAATACCGAATATAAATTGAGCTAAATAAATTAA
CATATTAATTTATTTCAGCAACTATGTAATTGGATAAATGAAATTGAGCTGAAACAAAAATTATC
GAGCTGAAATTGAGCTAGTTCGAGCTCTTGGAGCTGGAAATGAGCTAAATGGAGCTCAACGAGAT
GGAATTGAACTAATTCAGCTCGCATGGGTTTGCAAGCAATGCTTAGGGAG
Found at i:8882424 original size:16 final size:15
Alignment explanation
Indices: 8882398--8882427 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8882388 CTTCAAACCA
8882398 TCATCCCAATCAAAG
1 TCATCCCAATCAAAG
8882413 TCATCACCAATCAAA
1 TCATC-CCAATCAAA
8882428 AATTGATACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.33, G:0.03, T:0.20
Consensus pattern (15 bp):
TCATCCCAATCAAAG
Found at i:8882934 original size:5 final size:6
Alignment explanation
Indices: 8882918--8882956 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
8882908 CGCTCGCACA
**
8882918 CTTTTT CTTTTT CTTTTT CACTTT CTTTTT CTTTTT CTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTT
8882957 GTTTTTCGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.77
Consensus pattern (6 bp):
CTTTTT
Found at i:8892536 original size:23 final size:23
Alignment explanation
Indices: 8892486--8892530 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8892476 ATTCGACTGA
8892486 TGTAATATCCCGAAAATTACTAC
1 TGTAATATCCCGAAAATTACTAC
8892509 TGTAATA-CCCTGAAAATTACTA
1 TGTAATATCCC-GAAAATTACTA
8892531 TAGTAAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (23 bp):
TGTAATATCCCGAAAATTACTAC
Found at i:8894944 original size:20 final size:20
Alignment explanation
Indices: 8894916--8894957 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8894906 TAAATGCAAA
*
8894916 CTAAATGAGCTACGAATGAG
1 CTAAATGAGCTACGAACGAG
* *
8894936 CTAAGTGAGCTAGGAACGAG
1 CTAAATGAGCTACGAACGAG
8894956 CT
1 CT
8894958 TGTTGAGCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.19
Consensus pattern (20 bp):
CTAAATGAGCTACGAACGAG
Found at i:8894985 original size:29 final size:28
Alignment explanation
Indices: 8894932--8894988 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
8894922 GAGCTACGAA
8894932 TGAGCTAAGTGAGCTAGGAACGAGCTTGT
1 TGAGCTAAGTGAGCTA-GAACGAGCTTGT
*
8894961 TGAGCTAGAGTTGAGCT-GAATGAGCTTG
1 TGAGCTA-AG-TGAGCTAGAACGAGCTTG
8894989 AAGAAGGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 17 0.68
30 2 0.08
31 6 0.24
ACGTcount: A:0.26, C:0.12, G:0.35, T:0.26
Consensus pattern (28 bp):
TGAGCTAAGTGAGCTAGAACGAGCTTGT
Found at i:8895684 original size:39 final size:39
Alignment explanation
Indices: 8895630--8895708 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
8895620 TCAAAAGGAG
8895630 AATGTTTGGTGGCGGAATGCACGGATATATGATAAGCAA
1 AATGTTTGGTGGCGGAATGCACGGATATATGATAAGCAA
*
8895669 AATGTTTGGTGGCGGAATGCGCGGATATATGATAAGCAA
1 AATGTTTGGTGGCGGAATGCACGGATATATGATAAGCAA
8895708 A
1 A
8895709 CTCAACGTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (39 bp):
AATGTTTGGTGGCGGAATGCACGGATATATGATAAGCAA
Found at i:8905137 original size:27 final size:28
Alignment explanation
Indices: 8905107--8905166 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
8905097 ACTTTGGACA
* * *
8905107 ACATTAA-AACATGTAATAAAATTAGAC
1 ACATTAATAACATGCAATAAAATAAAAC
*
8905134 ACATTAATAACATGCATTAAAATAAAAC
1 ACATTAATAACATGCAATAAAATAAAAC
8905162 ACATT
1 ACATT
8905167 TATCACAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 7 0.25
28 21 0.75
ACGTcount: A:0.55, C:0.13, G:0.05, T:0.27
Consensus pattern (28 bp):
ACATTAATAACATGCAATAAAATAAAAC
Found at i:8908390 original size:15 final size:15
Alignment explanation
Indices: 8908370--8908409 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
8908360 TGTTGTCGAT
8908370 GAAAAAGAAACAAGA
1 GAAAAAGAAACAAGA
**
8908385 GAAAAAGATGCAAGA
1 GAAAAAGAAACAAGA
*
8908400 GAACAAGAAA
1 GAAAAAGAAA
8908410 AAGTGAGGAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.68, C:0.07, G:0.23, T:0.03
Consensus pattern (15 bp):
GAAAAAGAAACAAGA
Found at i:8915709 original size:150 final size:151
Alignment explanation
Indices: 8915266--8915686 Score: 655
Period size: 151 Copynumber: 2.8 Consensus size: 151
8915256 CTACTCACTT
* * *
8915266 TCACGGGTCTGCTCACACAAGCTGTCAGTCTTTTGTTACTACTCAGTGCTGCTCACACAAGCTGT
1 TCACGGGCCTGCTCACACAAGCTGTCAGTCATTCGTTACTACTCAGTGCTGCTCACACAAGCTGT
*
8915331 CAGGTATCTGCAACATATGTCGGTATACCCAGCCACTGGTAGAACTTAAGACCAGCACCCGAGTT
66 CAGGTATCCGCAACATATGTCGGTATACCCAGCCACTGGTAGAACTTAAGACCAGCACCCGAGTT
**
8915396 CACATTAATCACAGTTTCGCA
131 CACATTAATCACAGTTTAACA
*
8915417 TCACGGGCCTGCTCACACAAGCTATCAGTCATTCGTTACTACTCAGTGCTGCTCACACAAGCTGT
1 TCACGGGCCTGCTCACACAAGCTGTCAGTCATTCGTTACTACTCAGTGCTGCTCACACAAGCTGT
* * * *
8915482 CAGGTATCCACAACATATGTCGGTATACCCAGCCACTGGTAGAACTCAGGACCAGCACCTGAGTT
66 CAGGTATCCGCAACATATGTCGGTATACCCAGCCACTGGTAGAACTTAAGACCAGCACCCGAGTT
8915547 CACATTAATCACAGTTTAACA
131 CACATTAATCACAGTTTAACA
* * *
8915568 TCACGGG-CTGCTCACACAAGCTGTCAGTCATTCGTTACTACTCAGTGCTACTTACAGAAGCTGT
1 TCACGGGCCTGCTCACACAAGCTGTCAGTCATTCGTTACTACTCAGTGCTGCTCACACAAGCTGT
* * * * * *
8915632 CAAGTATCCGTAACATATGCCGGTATACCCAGCCACTCGTACAACTTATGACCAG
66 CAGGTATCCGCAACATATGTCGGTATACCCAGCCACTGGTAGAACTTAAGACCAG
8915687 TTCCCGAACC
Statistics
Matches: 247, Mismatches: 23, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
150 100 0.40
151 147 0.60
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (151 bp):
TCACGGGCCTGCTCACACAAGCTGTCAGTCATTCGTTACTACTCAGTGCTGCTCACACAAGCTGT
CAGGTATCCGCAACATATGTCGGTATACCCAGCCACTGGTAGAACTTAAGACCAGCACCCGAGTT
CACATTAATCACAGTTTAACA
Found at i:8926835 original size:13 final size:13
Alignment explanation
Indices: 8926815--8926848 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
8926805 TTGTATTAGC
*
8926815 TGAAAAAAGTTCG
1 TGAAAAAAATTCG
8926828 T-AAAAAAATTCG
1 TGAAAAAAATTCG
8926840 TGAAAAAAA
1 TGAAAAAAA
8926849 AGATAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.59, C:0.06, G:0.15, T:0.21
Consensus pattern (13 bp):
TGAAAAAAATTCG
Found at i:8928065 original size:28 final size:27
Alignment explanation
Indices: 8928012--8928082 Score: 90
Period size: 30 Copynumber: 2.5 Consensus size: 27
8928002 AGATTGAGAC
8928012 TGAAAAAGAATGTGATCAAGAAAAGAAAA
1 TGAAAAAGAA-GTGA-CAAGAAAAGAAAA
8928041 TTGAAAAAGAGAGTGA-AAGAAAAGAAAA
1 -TGAAAAAGA-AGTGACAAGAAAAGAAAA
*
8928069 TGAGAAAGAAGTGA
1 TGAAAAAGAAGTGA
8928083 GTGTCATCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
26 5 0.13
27 8 0.21
28 12 0.31
30 13 0.33
31 1 0.03
ACGTcount: A:0.61, C:0.01, G:0.25, T:0.13
Consensus pattern (27 bp):
TGAAAAAGAAGTGACAAGAAAAGAAAA
Found at i:8930669 original size:52 final size:50
Alignment explanation
Indices: 8930554--8930671 Score: 139
Period size: 50 Copynumber: 2.3 Consensus size: 50
8930544 TAATAAAGTT
* * *
8930554 ATGCATTATGTAACTTCCATGCTAGTTAAGTATGCATCATAAATAATGAC
1 ATGCATTATGTAACTCCCACGCTAGTTAAGTATACATCATAAATAATGAC
* *
8930604 ATGCATTATGTAACTCCCACGCTAGTTTAAGTCTACATCATTAAATTAA-GTC
1 ATGCATTATGTAACTCCCACGCTAG-TTAAGTATACATCA-TAAA-TAATGAC
* *
8930656 TTGCATTAAGTAACTC
1 ATGCATTATGTAACTC
8930672 ATTTGTTCAT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
50 23 0.40
51 12 0.21
52 20 0.34
53 3 0.05
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.35
Consensus pattern (50 bp):
ATGCATTATGTAACTCCCACGCTAGTTAAGTATACATCATAAATAATGAC
Found at i:8933043 original size:6 final size:6
Alignment explanation
Indices: 8933032--8933127 Score: 50
Period size: 6 Copynumber: 15.0 Consensus size: 6
8933022 ATTGAAAAAT
* * ** * *
8933032 AAGAAA AAGAAA AGGGAA GTGAAA AAGAAAAA TAAGAAA AAGAGA ATGAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAG--AAA -AAGAAA AAGAAA AAGAAA
**
8933083 AAGAGAA AAGAAA AAGAGAA GTGAAA GAA-AAA AATGAAA AAGAAA
1 AAGA-AA AAGAAA AAGA-AA AAGAAA -AAGAAA AA-GAAA AAGAAA
8933128 TTGAGATTGA
Statistics
Matches: 67, Mismatches: 15, Indels: 16
0.68 0.15 0.16
Matches are distributed among these distances:
5 2 0.03
6 41 0.61
7 18 0.27
8 3 0.04
9 3 0.04
ACGTcount: A:0.72, C:0.00, G:0.23, T:0.05
Consensus pattern (6 bp):
AAGAAA
Found at i:8933068 original size:27 final size:27
Alignment explanation
Indices: 8933024--8933125 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
8933014 GTAATAAAAT
* *
8933024 TGAAAAATAAGAAAAAG-AAAAGGGAAG
1 TGAAAAAGAA-AAAAAGAAAAAGAGAAG
8933051 TGAAAAAGAAAAATAAGAAAAAGAGAA-
1 TGAAAAAGAAAAA-AAGAAAAAGAGAAG
*
8933078 TGAAAAAG-AGAAAAGAAAAAGAGAAG
1 TGAAAAAGAAAAAAAGAAAAAGAGAAG
8933104 TG--AAAGAAAAAAATGAAAAAGA
1 TGAAAAAGAAAAAAA-GAAAAAGA
8933126 AATTGAGATT
Statistics
Matches: 66, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
24 4 0.06
25 18 0.27
26 16 0.24
27 20 0.30
28 8 0.12
ACGTcount: A:0.71, C:0.00, G:0.23, T:0.07
Consensus pattern (27 bp):
TGAAAAAGAAAAAAAGAAAAAGAGAAG
Found at i:8933108 original size:13 final size:13
Alignment explanation
Indices: 8933041--8933125 Score: 75
Period size: 13 Copynumber: 6.5 Consensus size: 13
8933031 TAAGAAAAAG
* *
8933041 AAAAGGGAAGTGA
1 AAAAGAGAAATGA
*
8933054 AAAAGAAAAATAAGA
1 AAAAGAGAAAT--GA
8933069 AAAAGAG-AATGA
1 AAAAGAGAAATGA
*
8933081 AAAAGAGAAAAGA
1 AAAAGAGAAATGA
*
8933094 AAAAGAGAAGTGA
1 AAAAGAGAAATGA
*
8933107 AAGAA-AAAAATGA
1 AA-AAGAGAAATGA
8933120 AAAAGA
1 AAAAGA
8933126 AATTGAGATT
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
12 11 0.19
13 34 0.59
14 5 0.09
15 8 0.14
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.06
Consensus pattern (13 bp):
AAAAGAGAAATGA
Found at i:8935106 original size:52 final size:50
Alignment explanation
Indices: 8934991--8935108 Score: 130
Period size: 50 Copynumber: 2.3 Consensus size: 50
8934981 TAATAAAGTT
* *
8934991 ATGCATTATGTAACTTCCAAGCTAGTTAAGTATGCATCATAAATAATGAC
1 ATGCATTAAGTAACTCCCAAGCTAGTTAAGTATGCATCATAAATAATGAC
* * * * *
8935041 ATGCATTACGTAACTCCCATGTTAGTTTAAGTCTGCATCATTAAATTAA-GTC
1 ATGCATTAAGTAACTCCCAAGCTAG-TTAAGTATGCATCA-TAAA-TAATGAC
*
8935093 TTGCATTAAGTAACTC
1 ATGCATTAAGTAACTC
8935109 ATTTGTTCAT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
50 21 0.37
51 13 0.23
52 20 0.35
53 3 0.05
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.35
Consensus pattern (50 bp):
ATGCATTAAGTAACTCCCAAGCTAGTTAAGTATGCATCATAAATAATGAC
Found at i:8943599 original size:33 final size:33
Alignment explanation
Indices: 8943557--8943788 Score: 145
Period size: 33 Copynumber: 6.6 Consensus size: 33
8943547 NNNNNNNNNT
8943557 GGAATCAGCACTTAGCAACCACCAATGAATAGG
1 GGAATCAGCACTTAGCAACCACCAATGAATAGG
* *
8943590 GGAATCAGCACTTAGCAACCCCCTTTATATTTAAAGATACGG
1 GGAATCAGCACTTAGCAACCACC---A-A--T-GA-ATA-GG
8943632 TGGAATCAGCACTTAGCAACCACCAATGAATAGG
1 -GGAATCAGCACTTAGCAACCACCAATGAATAGG
*
8943666 GGAATCAGCACTTAGCGACC-CC--TCG----GG
1 GGAATCAGCACTTAGCAACCACCAAT-GAATAGG
* * *
8943693 GGAATCAACACTTAGCAACCCCCTTTCACATTTAAGATACGG
1 GGAATCAGCACTTAGCAA-CCAC---CA-A--TGA-ATA-GG
*
8943735 AGGAATCAGCACTTAGCAACCACCAATGAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATGAATAGG
**
8943769 GGAATCAGCACACAGCAACC
1 GGAATCAGCACTTAGCAACC
8943789 CCTTGGAGGA
Statistics
Matches: 157, Mismatches: 14, Indels: 56
0.69 0.06 0.25
Matches are distributed among these distances:
27 18 0.11
28 2 0.01
29 1 0.01
30 1 0.01
31 1 0.01
32 3 0.02
33 59 0.38
34 4 0.03
35 5 0.03
36 4 0.03
37 3 0.02
38 1 0.01
39 4 0.03
40 2 0.01
41 3 0.02
42 7 0.04
43 39 0.25
ACGTcount: A:0.35, C:0.27, G:0.20, T:0.18
Consensus pattern (33 bp):
GGAATCAGCACTTAGCAACCACCAATGAATAGG
Found at i:8943742 original size:103 final size:103
Alignment explanation
Indices: 8943588--8943893 Score: 465
Period size: 103 Copynumber: 3.0 Consensus size: 103
8943578 CCAATGAATA
*
8943588 GGGGAATCAGCACTTAGCAACCCCCTTT-ATATTTAAAGATACGGTGGAATCAGCACTTAGCAAC
1 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTT-AAGATACGGTGGAATCAGCACTTAGCAAC
** *
8943652 CACCAATGAATAGGGGAATCAGCACTTAGCGACCCCTCG
65 CACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCG
* *
8943691 GGGGAATCAACACTTAGCAACCCCCTTTCACATTTAAGATACGGAGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACC
* *
8943756 ACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTG
66 ACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCG
* * *
8943794 GAGGAATCAGCACTTAGCAACCCCC-TTCACATTTCAGATGCGGTGGAATCAGCAAC-TAGCAAC
1 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAGATACGGTGGAATCAGC-ACTTAGCAAC
*
8943857 CACCAATGAATTGGGGAATCAGCACACAGCAACCCCT
65 CACCAATGAATAGGGGAATCAGCACACAGCAACCCCT
8943894 TTATATGCAA
Statistics
Matches: 187, Mismatches: 14, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
102 68 0.36
103 114 0.61
104 5 0.03
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.18
Consensus pattern (103 bp):
GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACC
ACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCG
Found at i:8946194 original size:26 final size:26
Alignment explanation
Indices: 8946158--8946209 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8946148 AATGAGAGTG
8946158 GTAAAATGAGCGTATTTGCGAGGGAA
1 GTAAAATGAGCGTATTTGCGAGGGAA
8946184 GTAAAATGAGCGTATTTGCGAGGGAA
1 GTAAAATGAGCGTATTTGCGAGGGAA
8946210 AAAGAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.35, T:0.23
Consensus pattern (26 bp):
GTAAAATGAGCGTATTTGCGAGGGAA
Found at i:8954548 original size:20 final size:20
Alignment explanation
Indices: 8954523--8954574 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
8954513 TATGAACCAC
8954523 TCCATTTACTTACTCAT-CAT
1 TCCATTTACTTACT-ATCCAT
*
8954543 TCCATTTACTTACTTTCCAT
1 TCCATTTACTTACTATCCAT
*
8954563 TTCATTTACTTA
1 TCCATTTACTTA
8954575 GCATAAGCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.23, C:0.27, G:0.00, T:0.50
Consensus pattern (20 bp):
TCCATTTACTTACTATCCAT
Found at i:8958811 original size:22 final size:21
Alignment explanation
Indices: 8958786--8958827 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
8958776 TTAAATAAAT
*
8958786 TTTAGTTAATTTAGTTTAAGTA
1 TTTAATTAATTTAG-TTAAGTA
8958808 TTTAATTAATTTAGTTAAGT
1 TTTAATTAATTTAGTTAAGT
8958828 GTTAAATGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (21 bp):
TTTAATTAATTTAGTTAAGTA
Found at i:8958958 original size:132 final size:132
Alignment explanation
Indices: 8958817--8959086 Score: 504
Period size: 132 Copynumber: 2.0 Consensus size: 132
8958807 ATTTAATTAA
8958817 TTTAGTTAAGTGTTAAATGTGTTTTTAAGCCATTTAATTTGTCTAAGTACTTTCGACATTAATAG
1 TTTAGTTAAGTGTTAAATGTGTTTTTAAGCCATTTAATTTGTCTAAGTACTTTCGACATTAATAG
*
8958882 GTCTAAGTCATTTAATTTGTCTAAATTACGACAACAATTTTAATTGTCTTTAGCTCATTTAATTT
66 GTCTAAGTCATTTAATTTGTCTAAATTACGACAACAATTTCAATTGTCTTTAGCTCATTTAATTT
8958947 GT
131 GT
8958949 TTTAGTTAAGTGTTAAATGTGTTTTTAAGCCATTTAATTTGTCTAAGTACTTTCGACATTAATAG
1 TTTAGTTAAGTGTTAAATGTGTTTTTAAGCCATTTAATTTGTCTAAGTACTTTCGACATTAATAG
* * *
8959014 GTCTAAGTCATTTAATTTGTCTAAATTACTACAGCAATTTCAGTTGTCTTTAGCTCATTTAATTT
66 GTCTAAGTCATTTAATTTGTCTAAATTACGACAACAATTTCAATTGTCTTTAGCTCATTTAATTT
8959079 GT
131 GT
8959081 TTTAGT
1 TTTAGT
8959087 CTTAATAGCT
Statistics
Matches: 134, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 134 1.00
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (132 bp):
TTTAGTTAAGTGTTAAATGTGTTTTTAAGCCATTTAATTTGTCTAAGTACTTTCGACATTAATAG
GTCTAAGTCATTTAATTTGTCTAAATTACGACAACAATTTCAATTGTCTTTAGCTCATTTAATTT
GT
Found at i:8959935 original size:29 final size:29
Alignment explanation
Indices: 8959864--8959936 Score: 69
Period size: 29 Copynumber: 2.5 Consensus size: 29
8959854 TTCATATACT
**
8959864 ATCG-ATTATGAAAAGGGATGATGATGACC
1 ATCGAATTATG-AAAGGGATGATGACAACC
* * *
8959893 ATC-AACTACGGAAAGGGATGGTGACAACC
1 ATCGAATTA-TGAAAGGGATGATGACAACC
8959922 ATCGAATTATGAAAG
1 ATCGAATTATGAAAG
8959937 AGATAGCTTC
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
29 29 0.85
30 5 0.15
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.21
Consensus pattern (29 bp):
ATCGAATTATGAAAGGGATGATGACAACC
Found at i:8964676 original size:39 final size:39
Alignment explanation
Indices: 8964594--8964694 Score: 134
Period size: 39 Copynumber: 2.6 Consensus size: 39
8964584 AGTATGTCCA
** *
8964594 AAATT-TGACATAATTAAAAA-TTTTATCAATGATGTTT
1 AAATTATGACATAATTAAAAACTCATATCAATGATGTTC
* *
8964631 AGATTATGACATAATTAAAAACTCATATTAATGATGTTC
1 AAATTATGACATAATTAAAAACTCATATCAATGATGTTC
*
8964670 AAATTATGACATAATTAAAGACTCA
1 AAATTATGACATAATTAAAAACTCA
8964695 AACTAAAATA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 4 0.07
38 15 0.27
39 36 0.65
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (39 bp):
AAATTATGACATAATTAAAAACTCATATCAATGATGTTC
Found at i:8964709 original size:9 final size:9
Alignment explanation
Indices: 8964695--8964721 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
8964685 TAAAGACTCA
8964695 AACTAAAAT
1 AACTAAAAT
8964704 AACTAAAAT
1 AACTAAAAT
8964713 AACTAAAAT
1 AACTAAAAT
8964722 CAAATTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (9 bp):
AACTAAAAT
Found at i:8980005 original size:50 final size:52
Alignment explanation
Indices: 8979946--8980069 Score: 119
Period size: 50 Copynumber: 2.4 Consensus size: 52
8979936 GTGTGTTCTA
* * *
8979946 CATTCAATAAAGTTATGCATTATGCAACTTCCATGCTAG-TTAAGTATGCAT
1 CATTAAATAAAGTTATGCATTATGCAACTCCCATACTAGTTTAAGTATGCAT
* ** * * * *
8979997 CA-TAAATAACGACATGTATTATGTAACTCCCATATTAGTTTAAGTCTGCAT
1 CATTAAATAAAGTTATGCATTATGCAACTCCCATACTAGTTTAAGTATGCAT
*
8980048 CATTAAATTAAGTCT-TGCATTA
1 CATTAAATAAAGT-TATGCATTA
8980070 AGTAACTCAT
Statistics
Matches: 55, Mismatches: 15, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
50 27 0.49
51 15 0.27
52 13 0.24
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (52 bp):
CATTAAATAAAGTTATGCATTATGCAACTCCCATACTAGTTTAAGTATGCAT
Found at i:8980219 original size:27 final size:27
Alignment explanation
Indices: 8980168--8980219 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
8980158 CTCATCTTAG
*
8980168 TTTAATTAATAAGTGTTTTTGTTAAAC
1 TTTAATTAATAAGTGTTCTTGTTAAAC
*
8980195 TTTATTTAATAAGTGTTGCTT-TTAA
1 TTTAATTAATAAGTGTT-CTTGTTAA
8980220 TTAATCTAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.31, C:0.04, G:0.12, T:0.54
Consensus pattern (27 bp):
TTTAATTAATAAGTGTTCTTGTTAAAC
Done.