Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 31 of 79
Found at i:10700630 original size:14 final size:14
Alignment explanation
Indices: 10700592--10700631 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
10700582 ACAGAAAAGT
*
10700592 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
10700606 AAATCATTTTACGG
1 AAAACATTTTACAG
10700620 AAAACATTTTAC
1 AAAACATTTTAC
10700632 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:10704198 original size:44 final size:44
Alignment explanation
Indices: 10704114--10704540 Score: 317
Period size: 44 Copynumber: 9.7 Consensus size: 44
10704104 TGCCTCACTG
* * * * ** * *
10704114 CCAATATAAGAAGACAGGATCTGCTATTTTTTATCCACTTCACG
1 CCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * *
10704158 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCA
1 CCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACA
** * * * *
10704203 CCAATATGGGAATACAAGATCTGC-ATCTTCGATCCATTTCGCTA
1 CCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
* ** *
10704247 CCAATATAGGAAGACCGGATCTGCTATCTTCGATCTACTTCACG
1 CCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * * * * *
10704291 CCAATACATGAAGCCAAAATCTACT-TTTTCCGATCTACTTCGCCA
1 CCAATACAGGAAGACAAGATCTGCTATCTT-CGATCTACTTC-ACA
* ** * * * *
10704336 CCAGTATGGGAAGACAAGATCTAC-ATCTTCGATCCAATTCGCTA
1 CCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
* * **
10704380 CCGATACAGGAAGACAGGATCTGCTATCTTCGATCTACTTCATG
1 CCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * *
10704424 CCAATACACGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCA
1 CCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACA
* * *
10704469 CCAGTA-TGGAAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTA
1 CCAATACAGG-AAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
* * *
10704512 CCAATATAGGAAGACAGGATCTGTTATCT
1 CCAATACAGGAAGACAAGATCTGCTATCT
10704541 GTGAAACATG
Statistics
Matches: 297, Mismatches: 73, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
42 1 0.00
43 23 0.08
44 182 0.61
45 91 0.31
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (44 bp):
CCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
Found at i:10704268 original size:89 final size:88
Alignment explanation
Indices: 10704114--10704540 Score: 367
Period size: 89 Copynumber: 4.8 Consensus size: 88
10704104 TGCCTCACTG
* * * * ** * * *
10704114 CCAATATAAGAAGACAGGATCTGCTATTTTTTATCCACTTCAC-GCCAATACATGAAGACAAGAT
1 CCAATACAGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGAT
*
10704178 CTGCTTTCTTCGATCTACTTCGCCA
64 CTGCTATCTTCGATCTACTTCGCCA
** * * **
10704203 CCAATATGGGAATACAAGATCTGCATCTTCGATCCATTTCGCTACCAATATAGGAAGACCGGATC
1 CCAATACAGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGATC
* *
10704268 TGCTATCTTCGATCTACTTC-ACG
65 TGCTATCTTCGATCTACTTCGCCA
* * * * * * * * * *
10704291 CCAATACATGAAGCCAAAATCTACTTTTTCCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
1 CCAATACAGGAAGACAAGATCTGCATCTT-CGATCCACTTC-CTACCAATATAGGAAGACAAGAT
* * * *
10704356 CTAC-ATCTTCGATCCAATTCGCTA
64 CTGCTATCTTCGATCTACTTCGCCA
* * * * * * *
10704380 CCGATACAGGAAGACAGGATCTGCTATCTTCGATCTACTTCATGCCAATACACGAAGACAAGATC
1 CCAATACAGGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGATC
*
10704445 TGCTTTCTTCGATCTACTTCGCCA
65 TGCTATCTTCGATCTACTTCGCCA
* * *
10704469 CCAGTA-TGGAAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATC
1 CCAATACAGG-AAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGATC
*
10704533 TGTTATCT
65 TGCTATCT
10704541 GTGAAACATG
Statistics
Matches: 261, Mismatches: 71, Indels: 13
0.76 0.21 0.04
Matches are distributed among these distances:
88 109 0.42
89 149 0.57
90 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (88 bp):
CCAATACAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGATCT
GCTATCTTCGATCTACTTCGCCA
Found at i:10704353 original size:133 final size:133
Alignment explanation
Indices: 10704114--10704540 Score: 651
Period size: 133 Copynumber: 3.2 Consensus size: 133
10704104 TGCCTCACTG
* * ** *
10704114 CCAATATAAGAAGACAGGATCTGCTATTTTTTATCCACTTCACGCCAATACATGAAGACAAGATC
1 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
* * *
10704179 TGCTTTCTTCGATCTACTTCGCCACCAATATGGGAATACAAGATCTGCATCTTCGATCCATTTCG
66 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCAATTCG
10704244 CTA
131 CTA
* * *
10704247 CCAATATAGGAAGACCGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGCCAAAATC
1 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
* *
10704312 TACTTT-TTCCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTACATCTTCGATCCAATTC
66 TGCTTTCTT-CGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCAATTC
10704376 GCTA
130 GCTA
* * * *
10704380 CCGATACAGGAAGACAGGATCTGCTATCTTCGATCTACTTCATGCCAATACACGAAGACAAGATC
1 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
* *
10704445 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGAAAGACAAGATCTGCATCTTCGATCCACTTC-
66 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCAATTCG
10704509 CTA
131 CTA
*
10704512 CCAATATAGGAAGACAGGATCTGTTATCT
1 CCAATATAGGAAGACAGGATCTGCTATCT
10704541 GTGAAACATG
Statistics
Matches: 265, Mismatches: 27, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
132 31 0.12
133 232 0.88
134 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (133 bp):
CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCAATTCG
CTA
Found at i:10715313 original size:16 final size:16
Alignment explanation
Indices: 10715274--10715315 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
10715264 TGTAATGTAT
* * *
10715274 AATGCAAAGATCAATT
1 AATGCAAAAAACAATG
10715290 AA-GCAAAAAACAATG
1 AATGCAAAAAACAATG
10715305 AATGCAAAAAA
1 AATGCAAAAAA
10715316 GGATCTTATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.62, C:0.12, G:0.12, T:0.14
Consensus pattern (16 bp):
AATGCAAAAAACAATG
Found at i:10721533 original size:13 final size:13
Alignment explanation
Indices: 10721510--10721574 Score: 69
Period size: 13 Copynumber: 4.8 Consensus size: 13
10721500 TACAAATTTT
10721510 TTATATGGAAATAG
1 TTATAT-GAAATAG
*
10721524 TTATATGAAATGG
1 TTATATGAAATAG
10721537 TTATATG-AATCAG
1 TTATATGAAAT-AG
*
10721550 ATATATGAAAATAG
1 TTATATG-AAATAG
*
10721564 ATATATGAAAT
1 TTATATGAAAT
10721575 GGAACATTGG
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
12 3 0.07
13 24 0.53
14 15 0.33
15 3 0.07
ACGTcount: A:0.46, C:0.02, G:0.17, T:0.35
Consensus pattern (13 bp):
TTATATGAAATAG
Found at i:10721638 original size:20 final size:20
Alignment explanation
Indices: 10721595--10721632 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10721585 AATAGACATT
*
10721595 TGAAATGAAAATGTGATATG
1 TGAAATGAAAATATGATATG
*
10721615 TGAAATGAATATATGATA
1 TGAAATGAAAATATGATA
10721633 GATGAACGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (20 bp):
TGAAATGAAAATATGATATG
Found at i:10725796 original size:37 final size:36
Alignment explanation
Indices: 10725728--10725824 Score: 97
Period size: 37 Copynumber: 2.6 Consensus size: 36
10725718 TAACTATTCC
* *
10725728 AAATATAATATTATTTTAATAGTTTAATATTAAATT
1 AAATTTAATATTATCTTAATAGTTTAATATTAAATT
* *
10725764 AAATTTAATACTTATCTTAATAGTATT-TTATTAATTT
1 AAATTTAATA-TTATCTTAATAGT-TTAATATTAAATT
*
10725801 AATATTAAAGTGATTATCTTAATA
1 AA-ATTTAA-T-ATTATCTTAATA
10725825 TTAAATTTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
36 9 0.18
37 22 0.43
38 7 0.14
39 12 0.24
40 1 0.02
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.49
Consensus pattern (36 bp):
AAATTTAATATTATCTTAATAGTTTAATATTAAATT
Found at i:10726076 original size:25 final size:25
Alignment explanation
Indices: 10726039--10726089 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
10726029 AGTTATAGAG
10726039 AGAAAATTCTCTAAAAATATTATTTC
1 AGAAAATTCTCTAAAAATATT-TTTC
*
10726065 AGAAAATT-TCTAGAAATATTTTTC
1 AGAAAATTCTCTAAAAATATTTTTC
10726089 A
1 A
10726090 AATTTACATC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 5 0.21
25 11 0.46
26 8 0.33
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.39
Consensus pattern (25 bp):
AGAAAATTCTCTAAAAATATTTTTC
Found at i:10726241 original size:24 final size:24
Alignment explanation
Indices: 10726209--10726259 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
10726199 GCTCATCCTA
10726209 GATGAATAAAAAATGTACAATTTT
1 GATGAATAAAAAATGTACAATTTT
10726233 GATGAATAAAAAATGTACAATTTT
1 GATGAATAAAAAATGTACAATTTT
10726257 GAT
1 GAT
10726260 TAAGTGTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.49, C:0.04, G:0.14, T:0.33
Consensus pattern (24 bp):
GATGAATAAAAAATGTACAATTTT
Found at i:10731705 original size:488 final size:488
Alignment explanation
Indices: 10730789--10731766 Score: 1812
Period size: 488 Copynumber: 2.0 Consensus size: 488
10730779 TGAGGCGTGG
* *
10730789 CCTCAGTGAGTGCCGCTCTATCTACATGAACAATTACCACACTCCACGTAACTTGGGATAAGTAT
1 CCTCAGTGAGTGCCCCTCTATATACATGAACAATTACCACACTCCACGTAACTTGGGATAAGTAT
10730854 AGCTTGGTCCCTCTTGATGTCCCAATCTTTGTCAACCTACATTCAAGCTACGGTTTTATAAGTTC
66 AGCTTGGTCCCTCTTGATGTCCCAATCTTTGTCAACCTACATTCAAGCTACGGTTTTATAAGTTC
10730919 CGAAGAACTTAGTGAGACCTGCACATAAATTTATATAAGCCGCATAATTTTTAAGAAATTAGGGT
131 CGAAGAACTTAGTGAGACCTGCACATAAATTTATATAAGCCGCATAATTTTTAAGAAATTAGGGT
*
10730984 GTCTGGATCAGAAGTACAACTCCCTAATTTTCGTAAAAGAATTTGCGAACTCCCTTCGCAAGACC
196 GTCTGGATCAGAAGTACAACTCCCTAATTTTCGTAAAAGAATTTACGAACTCCCTTCGCAAGACC
10731049 CATGCCCTAGTTTCTCTAAGCCATTCATTGGAAAACTTAGACTCCAGACTAGTCCTGATAGAGTC
261 CATGCCCTAGTTTCTCTAAGCCATTCATTGGAAAACTTAGACTCCAGACTAGTCCTGATAGAGTC
10731114 CATCTCTTGGGTCTCATTTTCTCTTCCTATCTCTCATCATTCTACCTTATGATATTCGTTTTCAT
326 CATCTCTTGGGTCTCATTTTCTCTTCCTATCTCTCATCATTCTACCTTATGATATTCGTTTTCAT
*
10731179 TACATTTGGCTGGTGGCGCTTAGCGTCTACCCAAGTAATGATAGTAACTATGGTTATTTCAAGAA
391 TACATTTGGCTGGCGGCGCTTAGCGTCTACCCAAGTAATGATAGTAACTATGGTTATTTCAAGAA
* *
10731244 CGTAATACCTTTACTTCTTCAATGAGCTAGTAC
456 CGTAATACCCTCACTTCTTCAATGAGCTAGTAC
10731277 CCTCAGTGAGTGCCCCTCTATATACATGAACAATTACCACACTCCACGTAACTTGGGATAAGTAT
1 CCTCAGTGAGTGCCCCTCTATATACATGAACAATTACCACACTCCACGTAACTTGGGATAAGTAT
*
10731342 AGCTTGGTCCCTCTTGATGTCCCAATCTTTGTCAACCTACATTCAAGCTACGGTTTTATAAGTTT
66 AGCTTGGTCCCTCTTGATGTCCCAATCTTTGTCAACCTACATTCAAGCTACGGTTTTATAAGTTC
10731407 CGAAGAACTTAGTGAGACCTGCACATAAATTTATATAAGCCGCATAATTTTTAAGAAATTAGGGT
131 CGAAGAACTTAGTGAGACCTGCACATAAATTTATATAAGCCGCATAATTTTTAAGAAATTAGGGT
10731472 GTCTGGATCAGAAGTACAACTCCCTAATTTTCGTAAAAGAATTTACGAACTCCCTTCGCAAGACC
196 GTCTGGATCAGAAGTACAACTCCCTAATTTTCGTAAAAGAATTTACGAACTCCCTTCGCAAGACC
* ** *
10731537 CATGCTCTAGTTTCTCTAAGCCATTCATTGGAAGGCTTAGACTCCAGACTGGTCCTGATAGAGTC
261 CATGCCCTAGTTTCTCTAAGCCATTCATTGGAAAACTTAGACTCCAGACTAGTCCTGATAGAGTC
*
10731602 CATCTCTTGGGTCTCATTTTCTCTTCCTATCTCTCATCATTCTACCTTATGATATTTGTTTTCAT
326 CATCTCTTGGGTCTCATTTTCTCTTCCTATCTCTCATCATTCTACCTTATGATATTCGTTTTCAT
* *
10731667 TACATTTGGCTGGCGGCGCTTAGCGTCTGCCCAAGTAATGATCGTAACTATGGTTATTTCAAGAA
391 TACATTTGGCTGGCGGCGCTTAGCGTCTACCCAAGTAATGATAGTAACTATGGTTATTTCAAGAA
**
10731732 CGTAATACCCTCACTTCTTCGGTGAGCTAGTAC
456 CGTAATACCCTCACTTCTTCAATGAGCTAGTAC
10731765 CC
1 CC
10731767 ACATAACAGC
Statistics
Matches: 474, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
488 474 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.33
Consensus pattern (488 bp):
CCTCAGTGAGTGCCCCTCTATATACATGAACAATTACCACACTCCACGTAACTTGGGATAAGTAT
AGCTTGGTCCCTCTTGATGTCCCAATCTTTGTCAACCTACATTCAAGCTACGGTTTTATAAGTTC
CGAAGAACTTAGTGAGACCTGCACATAAATTTATATAAGCCGCATAATTTTTAAGAAATTAGGGT
GTCTGGATCAGAAGTACAACTCCCTAATTTTCGTAAAAGAATTTACGAACTCCCTTCGCAAGACC
CATGCCCTAGTTTCTCTAAGCCATTCATTGGAAAACTTAGACTCCAGACTAGTCCTGATAGAGTC
CATCTCTTGGGTCTCATTTTCTCTTCCTATCTCTCATCATTCTACCTTATGATATTCGTTTTCAT
TACATTTGGCTGGCGGCGCTTAGCGTCTACCCAAGTAATGATAGTAACTATGGTTATTTCAAGAA
CGTAATACCCTCACTTCTTCAATGAGCTAGTAC
Found at i:10740659 original size:7 final size:7
Alignment explanation
Indices: 10740649--10740780 Score: 264
Period size: 7 Copynumber: 18.9 Consensus size: 7
10740639 ATCCAAAAAT
10740649 ATTTTTC
1 ATTTTTC
10740656 ATTTTTC
1 ATTTTTC
10740663 ATTTTTC
1 ATTTTTC
10740670 ATTTTTC
1 ATTTTTC
10740677 ATTTTTC
1 ATTTTTC
10740684 ATTTTTC
1 ATTTTTC
10740691 ATTTTTC
1 ATTTTTC
10740698 ATTTTTC
1 ATTTTTC
10740705 ATTTTTC
1 ATTTTTC
10740712 ATTTTTC
1 ATTTTTC
10740719 ATTTTTC
1 ATTTTTC
10740726 ATTTTTC
1 ATTTTTC
10740733 ATTTTTC
1 ATTTTTC
10740740 ATTTTTC
1 ATTTTTC
10740747 ATTTTTC
1 ATTTTTC
10740754 ATTTTTC
1 ATTTTTC
10740761 ATTTTTC
1 ATTTTTC
10740768 ATTTTTC
1 ATTTTTC
10740775 ATTTTT
1 ATTTTT
10740781 TTGTGTAATT
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 125 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (7 bp):
ATTTTTC
Found at i:10746725 original size:5 final size:5
Alignment explanation
Indices: 10746715--10746747 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
10746705 TAAATATTTT
10746715 TATCA TATCA TATCA TATCA TATCA TATCA TAT
1 TATCA TATCA TATCA TATCA TATCA TATCA TAT
10746748 ATTAGTCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.42
Consensus pattern (5 bp):
TATCA
Found at i:10747275 original size:4 final size:4
Alignment explanation
Indices: 10747268--10747349 Score: 164
Period size: 4 Copynumber: 20.5 Consensus size: 4
10747258 CGTTGCATGC
10747268 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
10747316 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
10747350 AGATTTCTAA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 78 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:10750921 original size:10 final size:10
Alignment explanation
Indices: 10750894--10750923 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
10750884 GCCCAATGCC
10750894 AAAACCAAAT
1 AAAACCAAAT
10750904 AAAA-CAAAT
1 AAAACCAAAT
10750913 AAAACCAAAT
1 AAAACCAAAT
10750923 A
1 A
10750924 CAAAATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.73, C:0.17, G:0.00, T:0.10
Consensus pattern (10 bp):
AAAACCAAAT
Found at i:10757854 original size:9 final size:9
Alignment explanation
Indices: 10757840--10757885 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
10757830 AATGTTTCAT
10757840 AAAAAAGAA
1 AAAAAAGAA
10757849 AAAAAAG-A
1 AAAAAAGAA
* *
10757857 AAAATACAA
1 AAAAAAGAA
10757866 AAAAAAG-A
1 AAAAAAGAA
*
10757874 AAAGAAGAA
1 AAAAAAGAA
10757883 AAA
1 AAA
10757886 GAAAAAGGAG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
8 13 0.43
9 17 0.57
ACGTcount: A:0.85, C:0.02, G:0.11, T:0.02
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:10757884 original size:17 final size:16
Alignment explanation
Indices: 10757840--10757885 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 16
10757830 AATGTTTCAT
10757840 AAAAAAGAAAAAAAAG
1 AAAAAAGAAAAAAAAG
*
10757856 AAAAATACAAAAAAAAG
1 AAAAA-AGAAAAAAAAG
10757873 AAAAGAAGAAAAA
1 AAAA-AAGAAAAA
10757886 GAAAAAGGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 5 0.19
17 20 0.77
18 1 0.04
ACGTcount: A:0.85, C:0.02, G:0.11, T:0.02
Consensus pattern (16 bp):
AAAAAAGAAAAAAAAG
Found at i:10758954 original size:100 final size:99
Alignment explanation
Indices: 10758770--10759256 Score: 647
Period size: 100 Copynumber: 4.9 Consensus size: 99
10758760 ACCCCTGAGG
* * *
10758770 TTACAA-TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGGACAGA
1 TTACAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGC-ATGCAGTGGAACAGA
*
10758834 TTGAAGCTGCAACGGCGAATCTTGCTTCCCCGACA
65 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * *
10758869 TTGCAATTAAAAATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCTATGCAGTGGAACAGA
1 TTACAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGC-ATGCAGTGGAACAGA
* *
10758934 TTGAAGCTACAATGGTGAATCTTGCTTCCCCGACA
65 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * *
10758969 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCAGTGCAGTGGAATAAA
1 TTACAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCA-TGCAGTGGAACAGA
* **
10759034 TTAAAGCTACAACGGCGAATCTTG-TTCCCTTAACA
65 TTGAAGCTACAACGGCGAATCTTGCTTCCC-CGACA
* * *
10759069 TTACAATTAAAAAGATTGAAGTCACAACGGTGAATCTTACTTTCCTGGCAGTGCAGTAGG-ACAG
1 TTACAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCA-TGCAGT-GGAACAG
* *
10759133 ATTGAAGCTACAACGACGAATCTTGCTTCCTCGACA
64 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * *
10759169 ATATAATTAAAAAGATTGAAGCCACAACGGCGAATCTTATTTCCCTGGCGGTGCAGTGGAACAGA
1 TTACAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGC-ATGCAGTGGAACAGA
* *
10759234 TTGAAGCTACAATGACGAATCTT
65 TTGAAGCTACAACGGCGAATCTT
10759257 ATCTCCCTGA
Statistics
Matches: 341, Mismatches: 40, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
99 13 0.04
100 322 0.94
101 6 0.02
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.25
Consensus pattern (99 bp):
TTACAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCATGCAGTGGAACAGAT
TGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
Found at i:10759258 original size:50 final size:50
Alignment explanation
Indices: 10758781--10759289 Score: 370
Period size: 50 Copynumber: 10.2 Consensus size: 50
10758771 TACAATAAAA
* * *
10758781 AGATTGAAGCCACAACGGCGAATCTTACTTCCCT-AGCGGTGCAGTGGGAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CAGTGCAGTGGAAC
* * * * * ** *
10758831 AGATTGAAGCTGCAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACAGTGCAGTGGAAC
* * * *
10758881 ATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCTA-TGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGAC-AGTGCAGTGGAAC
* * * * * * ** *
10758931 AGATTGAAGCTACAATGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACAGTGCAGTGGAAC
* *
10758981 AGATTGAAGCCACAACGGCGAATCTTACTTCCCT-AGCAGTGCAGTGGAAT
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CAGTGCAGTGGAAC
* * * * * * * ** *
10759031 AAATTAAAGCTACAACGGCGAATCTT-GTTCCCTTAACATTACAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCC-TGACAGTGCAGTGGAAC
* * *
10759081 AGATTGAAG-TCACAACGGTGAATCTTACTTTCCTGGCAGTGCAGTAGG-AC
1 AGATTGAAGCT-ACAACGGCGAATCTTACTTCCCTGACAGTGCAGT-GGAAC
* * * ** * ** *
10759131 AGATTGAAGCTACAACGACGAATCTTGCTT-CCTCGACAATATAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACAGTGCAGTGGAAC
* * * *
10759181 AGATTGAAGCCACAACGGCGAATCTTATTTCCCTGGCGGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACAGTGCAGTGGAAC
* * * *
10759231 AGATTGAAGCTACAATGACGAATCTTA-TCTCCCTGA-AGTTGTAGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACT-TCCCTGACAG-TGCAGTGGAAC
10759281 AGATTGAAG
1 AGATTGAAG
10759290 TCACTAATCT
Statistics
Matches: 348, Mismatches: 96, Indels: 30
0.73 0.20 0.06
Matches are distributed among these distances:
49 13 0.04
50 324 0.93
51 11 0.03
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACAGTGCAGTGGAAC
Found at i:10759314 original size:44 final size:44
Alignment explanation
Indices: 10759251--10759599 Score: 250
Period size: 44 Copynumber: 7.8 Consensus size: 44
10759241 TACAATGACG
*
10759251 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAG-TCACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACT
* *
10759295 AATCTTATC-CCCTTGAAGTTGCAGTGGGGCAAATTGAAGATAC-
1 AATCTTATCTCCC-TGAAGTTGCAGTGGAGCAGATTGAAGATACT
* * *
10759338 AAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACT
* * * * * *
10759383 GAGTCTTATCTCCCTGATGTTGTAGTGGAGTAGACTGAAGCTACT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACT
*
10759428 AATCCTT-TCTCCCTGAAGTTGCAGTGGAGCGGATT-AA-A-ACGAT
1 AAT-CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC--T
* * ** * **
10759471 GAATCATATACT-TCTGAAGTTGCAGTAGGTCGAATTAGATCTTATCATA-T
1 -AATCTTAT-CTCCCTGAAGTTGCAGT--G--G-AGCAGAT-TGAAGATACT
* *
10759521 CAAACATTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATAC-
1 -AATC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACT
**
10759566 AACTCTTATCTTACTGAAGTTGCAGTGGAGCAGA
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
10759600 CTAAATACAC
Statistics
Matches: 238, Mismatches: 42, Indels: 50
0.72 0.13 0.15
Matches are distributed among these distances:
41 2 0.01
43 10 0.04
44 137 0.58
45 50 0.21
46 6 0.03
47 1 0.00
48 1 0.00
49 5 0.02
50 7 0.03
51 17 0.07
52 1 0.00
53 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACT
Found at i:10759447 original size:89 final size:88
Alignment explanation
Indices: 10759253--10759457 Score: 229
Period size: 89 Copynumber: 2.3 Consensus size: 88
10759243 CAATGACGAA
* *
10759253 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTCACTAATCTTATCCCCTTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTCACTAATCTTATCCCCTTGAAGTTGCA
* *
10759318 GTGGGGCAAATTGAAGATACAAG
66 GTGGAGCAAACTGAAGATACAAG
* * * *
10759341 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGAT-AGTGAGTCTTATCTCCC-TGATGTT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TCACT-AATCTTATC-CCCTTGAAGTT
* * * *
10759404 GTAGTGGAGTAGACTGAAGCTACTAA-
63 GCAGTGGAGCAAACTGAAGATAC-AAG
10759430 TCCTT-TCTCCCTGAAGTTGCAGTGGAGC
1 T-CTTATCTCCCTGAAGTTGCAGTGGAGC
10759458 GGATTAAAAC
Statistics
Matches: 99, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
88 36 0.36
89 55 0.56
90 8 0.08
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (88 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTCACTAATCTTATCCCCTTGAAGTTGCA
GTGGAGCAAACTGAAGATACAAG
Found at i:10759491 original size:133 final size:133
Alignment explanation
Indices: 10759253--10759496 Score: 311
Period size: 133 Copynumber: 1.8 Consensus size: 133
10759243 CAATGACGAA
*
10759253 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTCACTAATCTTATCCCCTTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGTCACTAATCTTATCCCCTTGAAGTTGCA
* * *
10759318 GTGGGGCAAATTGAAGATACAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGT
66 GTGGAGCAAATTAAAGATACAAGTCATATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGT
10759383 GAG
131 GAG
* *
10759386 TCTTATCTCCCTGATGTTGTAGTGGAGTAGACTGAAG-CTACTAATCCTT-TCTCCC-TGAAGTT
1 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGTC-ACTAAT-CTTATC-CCCTTGAAGTT
** *
10759448 GCAGTGGAGCGGATTAAAACGAT-GAA-TCATATACT-TCTGAAGTTGCAGT
63 GCAGTGGAGCAAATT-AAA-GATACAAGTCATAT-CTCTCTGAAGTTGCAGT
10759497 AGGTCGAATT
Statistics
Matches: 96, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
132 1 0.01
133 80 0.83
134 12 0.12
135 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (133 bp):
TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGTCACTAATCTTATCCCCTTGAAGTTGCA
GTGGAGCAAATTAAAGATACAAGTCATATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGT
GAG
Found at i:10759890 original size:10 final size:10
Alignment explanation
Indices: 10759863--10759892 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
10759853 GCCCAATGCC
10759863 AAAACCAAAT
1 AAAACCAAAT
10759873 AAAA-CAAAT
1 AAAACCAAAT
10759882 AAAACCAAAT
1 AAAACCAAAT
10759892 A
1 A
10759893 CAAAATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.73, C:0.17, G:0.00, T:0.10
Consensus pattern (10 bp):
AAAACCAAAT
Found at i:10765135 original size:14 final size:13
Alignment explanation
Indices: 10765103--10765135 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
10765093 TTAAGTCGAG
10765103 TTAAATTTTTGAA
1 TTAAATTTTTGAA
10765116 TTAAATTTTTGAA
1 TTAAATTTTTGAA
10765129 TTCAAAT
1 TT-AAAT
10765136 AACTCGAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (13 bp):
TTAAATTTTTGAA
Found at i:10765291 original size:15 final size:16
Alignment explanation
Indices: 10765263--10765295 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
10765253 TATTCTACCG
*
10765263 CCCCTACCCTACCCCA
1 CCCCTACCCCACCCCA
10765279 CCCC-ACCCCACCCCA
1 CCCCTACCCCACCCCA
10765294 CC
1 CC
10765296 ATTTTCCCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.18, C:0.76, G:0.00, T:0.06
Consensus pattern (16 bp):
CCCCTACCCCACCCCA
Found at i:10777883 original size:29 final size:28
Alignment explanation
Indices: 10777835--10777902 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
10777825 TAAATTGTAC
* *
10777835 AGGATGGATTTTGAGAAAATATTTTTGAA
1 AGGATGGGTTTTGAGAAAATAGTTTT-AA
10777864 AGGATGGGTTTTGA-AGAAATAGTTTTAA
1 AGGATGGGTTTTGAGA-AAATAGTTTTAA
*
10777892 CGAGATGGGTT
1 AG-GATGGGTT
10777903 GAGGTTTGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.12
29 30 0.88
ACGTcount: A:0.34, C:0.01, G:0.29, T:0.35
Consensus pattern (28 bp):
AGGATGGGTTTTGAGAAAATAGTTTTAA
Found at i:10779301 original size:6 final size:6
Alignment explanation
Indices: 10779290--10779316 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10779280 TGAAGGGAGT
10779290 GATGAA GATGAA GATGAA GATGAA GAT
1 GATGAA GATGAA GATGAA GATGAA GAT
10779317 CCATGATTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.33, T:0.19
Consensus pattern (6 bp):
GATGAA
Found at i:10785345 original size:29 final size:29
Alignment explanation
Indices: 10785302--10785480 Score: 268
Period size: 29 Copynumber: 6.2 Consensus size: 29
10785292 GTGTGTTAAA
10785302 CGATGGTCGAAACCATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
**
10785331 CGATGGTCGTCACCATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
** * *
10785360 CGATGGTTAAAACTATCCCTTTTTATATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
**
10785389 CGATGGTCGTCACCATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
*
10785418 CGATGGTTGAAACCATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
*
10785447 CGATGGTCGTAACCATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
10785476 CGATG
1 CGATG
10785481 AACGTCGATA
Statistics
Matches: 131, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 131 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (29 bp):
CGATGGTCGAAACCATCCCTTTTCATATT
Found at i:10785378 original size:58 final size:58
Alignment explanation
Indices: 10785302--10785480 Score: 313
Period size: 58 Copynumber: 3.1 Consensus size: 58
10785292 GTGTGTTAAA
*
10785302 CGATGGTCGAAACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATATT
1 CGATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATATT
* * *
10785360 CGATGGTTAAAACTATCCCTTTTTATATTCGATGGTCGTCACCATCCCTTTTCATATT
1 CGATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATATT
*
10785418 CGATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTAACCATCCCTTTTCATATT
1 CGATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATATT
10785476 CGATG
1 CGATG
10785481 AACGTCGATA
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 113 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (58 bp):
CGATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATATT
Found at i:10798105 original size:489 final size:487
Alignment explanation
Indices: 10797189--10798168 Score: 1586
Period size: 489 Copynumber: 2.0 Consensus size: 487
10797179 CCTAAGAAGT
** * *
10797189 AGCCACATATTTTGCCTCCATAGTGGAGTCAGTAGTGCAACTTTGCTTTACACTTCTCTACATAA
1 AGCCACATATTTTGCCTCCATAGTGGAGTCAACAGTGCAACTTTGCTTTACACTACTCTACACAA
* * * * * *
10797254 TAGACTTGCCACCTAGGACAAAAACATAGTTCGCCGTCGATTTCCTCGAATCTCAACATGTTTGA
66 TAGACCTGCCACCTAGGACAAAAACACAGTTCGACGTCGATTTCCTCAAATCCCAACACGTTTGA
* * * * * * * **
10797319 AAGTTAGAATCAATATATTTGGTAGGTGTAATATCTCCTTTGCTACACTAGCATATAATCCCTTG
131 AAGTTAGAATCAATATATCTGATAGGAGTAATATCTCCTTAGATACACAAGCATATAATCCATCA
** * *
10797384 TTCTTTGTAAATACTTGAGTATATGCTTAACTGCTTGATAATGTCTTGGTCTAGGTTTCGCCTGA
196 TTCTCCGTAAATACTTGAGTATATGCTTAACTGCTTGATAATGTCTTGGTATAGGATTCGCCTGA
10797449 TACCAACTTACCAACCCCATTGCAAAATAGATATATGGGTGCGTGCATAACATAGCATACATGAG
261 TACCAACTTACCAACCCCATTGCAAAATAGATATATGGGTGCGTGCATAACATAGCATACATGAG
*
10797514 ACTTCCTACTGCCAAAGCATAAGGAACCTTTCTCATGTTCTCTCTTTCTTCCATTGTCTTAGGAT
326 ACTTCCTACTGCCAAAGCATAAGGAACCTTTCTCATGTTCTCTCTTTCTTCCATTGTCTTAGGAC
*
10797579 AGTCCTCCAAAGAGAGATGAAATCCCAATACGGAGGGTTGATTTCCCTTCTTCGAATTGGTCATT
391 AATCCTCCAAAGAGAGATGAAATCCCAATACGGAGGGTTGATTTCCCTTCTTCGAATTGGTCATT
10797644 CCATAACACTCCAATATCTTGTCTATGTATGA
456 CCATAACACTCCAATATCTTGTCTATGTATGA
* *
10797676 AGCCACATATTTTGCCTCCATAGTGGAGTCAACAGTGCAACTTTTCTTTACACTACTCTATACAA
1 AGCCACATATTTTGCCTCCATAGTGGAGTCAACAGTGCAACTTTGCTTTACACTACTCTACACAA
*
10797741 TGGACCTGCCACCTAGGACAAAAACACAG-TCTGACGTCGATTTCCTCAAATCCCAACACGTTTG
66 TAGACCTGCCACCTAGGACAAAAACACAGTTC-GACGTCGATTTCCTCAAATCCCAACACGTTTG
*
10797805 AAAGTTAGAATCAATATATCTGATAGGAGTAATATCTCCTCTAGAATAGACAAGCATATAATCCA
130 AAAGTTAGAATCAATATATCTGATAGGAGTAATATCTCCT-TAG-ATACACAAGCATATAATCCA
*
10797870 TCATTCTCCGTAAATACTTGAGTATATGCTTAACTGCTTGATAGTGTCTTGGTAT-GAGATTCGC
193 TCATTCTCCGTAAATACTTGAGTATATGCTTAACTGCTTGATAATGTCTTGGTATAG-GATTCGC
* * *
10797934 CTGATATCAACTTACCAACCCCATTGTAAAATAGATATATGGGTGTGTGCATAACATAGCATACA
257 CTGATACCAACTTACCAACCCCATTGCAAAATAGATATATGGGTGCGTGCATAACATAGCATACA
*
10797999 TGAGACTTCCTACTGCCGAAGCATAAGGAACCTTTCTCATGTTCTCTCTTTCTTCCATTGTCTTA
322 TGAGACTTCCTACTGCCAAAGCATAAGGAACCTTTCTCATGTTCTCTCTTTCTTCCATTGTCTTA
*
10798064 GGACAATCCTCCAAAGAGAGATGAATTCCCAATACGGAGGGTTGATTTCCCTTCTTCGAATTGGT
387 GGACAATCCTCCAAAGAGAGATGAAATCCCAATACGGAGGGTTGATTTCCCTTCTTCGAATTGGT
*
10798129 CATTCCATAACACTCCAATATCTTGTCTCTGTATGA
452 CATTCCATAACACTCCAATATCTTGTCTATGTATGA
10798165 AGCC
1 AGCC
10798169 TGAGATAGTG
Statistics
Matches: 453, Mismatches: 36, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
486 2 0.00
487 150 0.33
488 3 0.01
489 298 0.66
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (487 bp):
AGCCACATATTTTGCCTCCATAGTGGAGTCAACAGTGCAACTTTGCTTTACACTACTCTACACAA
TAGACCTGCCACCTAGGACAAAAACACAGTTCGACGTCGATTTCCTCAAATCCCAACACGTTTGA
AAGTTAGAATCAATATATCTGATAGGAGTAATATCTCCTTAGATACACAAGCATATAATCCATCA
TTCTCCGTAAATACTTGAGTATATGCTTAACTGCTTGATAATGTCTTGGTATAGGATTCGCCTGA
TACCAACTTACCAACCCCATTGCAAAATAGATATATGGGTGCGTGCATAACATAGCATACATGAG
ACTTCCTACTGCCAAAGCATAAGGAACCTTTCTCATGTTCTCTCTTTCTTCCATTGTCTTAGGAC
AATCCTCCAAAGAGAGATGAAATCCCAATACGGAGGGTTGATTTCCCTTCTTCGAATTGGTCATT
CCATAACACTCCAATATCTTGTCTATGTATGA
Found at i:10807499 original size:30 final size:30
Alignment explanation
Indices: 10807458--10807566 Score: 128
Period size: 30 Copynumber: 3.6 Consensus size: 30
10807448 CCATCGTTGT
*
10807458 CGGGCAACCCGGGATGACAGTGATCTTTAC
1 CGGGCAACCCGGGATGACAGTGATCGTTAC
* * *
10807488 CGGGTAACCCGGGATGATAGTGATCGTTGC
1 CGGGCAACCCGGGATGACAGTGATCGTTAC
* * **
10807518 TGGGCAACCCAGGATGACAGTGATCGTTGT
1 CGGGCAACCCGGGATGACAGTGATCGTTAC
* *
10807548 CGGGCAATCCGAGATGACA
1 CGGGCAACCCGGGATGACA
10807567 TCAAGTAATG
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.24, C:0.23, G:0.33, T:0.20
Consensus pattern (30 bp):
CGGGCAACCCGGGATGACAGTGATCGTTAC
Found at i:10807564 original size:60 final size:60
Alignment explanation
Indices: 10807450--10807564 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 60
10807440 GTGGTAAGCC
* * * *
10807450 ATCGTTGTCGGGCAACCCGGGATGACAGTGATCTTTACCGGGTAACCCGGGATGATAGTG
1 ATCGTTGTCGGGCAACCCAGGATGACAGTGATCGTTACCGGGCAACCCGAGATGATAGTG
** *
10807510 ATCGTTG-CTGGGCAACCCAGGATGACAGTGATCGTTGTCGGGCAATCCGAGATGA
1 ATCGTTGTC-GGGCAACCCAGGATGACAGTGATCGTTACCGGGCAACCCGAGATGA
10807565 CATCAAGTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
59 1 0.02
60 46 0.98
ACGTcount: A:0.23, C:0.22, G:0.33, T:0.23
Consensus pattern (60 bp):
ATCGTTGTCGGGCAACCCAGGATGACAGTGATCGTTACCGGGCAACCCGAGATGATAGTG
Found at i:10814288 original size:24 final size:23
Alignment explanation
Indices: 10814261--10814307 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
10814251 AACTCCAATG
10814261 AATGAATTGCATGTTGAAACCAAA
1 AATGAATTGCATGTT-AAACCAAA
*
10814285 AATGAATTGCATGTTAAATCAAA
1 AATGAATTGCATGTTAAACCAAA
10814308 TGAACATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.28
Consensus pattern (23 bp):
AATGAATTGCATGTTAAACCAAA
Found at i:10814575 original size:17 final size:17
Alignment explanation
Indices: 10814553--10814588 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
10814543 TAGAATTAGG
10814553 TTGAGAAAATTATTTAA
1 TTGAGAAAATTATTTAA
10814570 TTGAGAAAATTATTTAA
1 TTGAGAAAATTATTTAA
10814587 TT
1 TT
10814589 ATTTAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (17 bp):
TTGAGAAAATTATTTAA
Found at i:10818227 original size:418 final size:413
Alignment explanation
Indices: 10817439--10818271 Score: 955
Period size: 418 Copynumber: 2.0 Consensus size: 413
10817429 GAGTCTATAT
* *
10817439 AAGTTAAAATGTTAAAAAATCATTTTTATTAGTTTAAAAAAAAATCTATTCCCTTTCATTTTTTT
1 AAGTTAAAATGTTAAAAAATCATTTTTATCAGTTTAAAAAAAAATCTATTCCCTTTCATTTTTCT
* * ** * * ** *
10817504 TCTCTCAAATCCCGTCTTTCCCTCCGGCCACAAGGCCGTCGCACACCGCTGTGGCCACTAGTCAT
66 TCTCTCAAATCCCCTCTTCCCCTCCGGCCACAAAACCGACGCACACCACTGCAGCCACCAGTCAT
** * **
10817569 CCGCGCCGGTGACCAGCACCTCCAGTGATTGGAAAATAATTTTTTTTAAAAATCCTTTCCAAACC
131 CCGCGCCGACGACCAGCACCTCCAGTGATCGGAAAATAAACTTTTTTAAAAATCCTTTCCAAACC
** * *
10817634 CTAAAGTTAGATCTAGGGTTAAAACACCCAAAAAATGCCAAGATTAGTGAAAAAAAAAGGGAAAA
196 CTAAAGTTAGATCTAGGGACAAAACACCCAAAAAAGGCCAAGATGAGTGAAAAAAAAAGGGAAAA
** *** *
10817699 AGAGACCATGCGATTTCTTCCCTATTTGGTGAGACCCTCAACAAAACCCCAAGGGGTTTCGAAAC
261 AGAGACCATGCGATTTCTTCCCTATCCGAAAAGACCCTCAACAAAACCCCAAAGGGTTTCGAAAC
* * * * * * *
10817764 TTTTCAAATCGGTCGTAGTTCTCGATGACACATCTTAAAAGGTAAAAATTTTAGCTTTGTTTTTA
326 TTCTCAAATCGGACGTAGCTCTCGACGACACATCTTAAAAGGTAAAAATTTAAACTTTATTTTTA
10817829 TTCTTATTTTTTCAAAATAAAAA
391 TTCTTATTTTTTCAAAATAAAAA
10817852 AAGTTAAAATGTTAAAAAATTTCATTTTTATCAGTTT-AAAAAAAA-CTATTCCCTTTC-TTTTT
1 AAGTTAAAATGTTAAAAAA--TCATTTTTATCAGTTTAAAAAAAAATCTATTCCCTTTCATTTTT
*
10817914 CTTCTCTCAAATCCCCTC-TCCACCTCCGGCCACAAAACTGACGCA-AGCCACTGCAGCCACCAG
64 CTTCTCTCAAATCCCCTCTTCC-CCTCCGGCCACAAAACCGACGCACA-CCACTGCAGCCACCAG
* * * *
10817977 TCATCGGCGCTGACGACCA-CTACCTCTAGTGGTCGGAAAATAAAAAAAACTTTTTT-AAAATCC
127 TCATCCGCGCCGACGACCAGC-ACCTCCAGTGATCGGAAAAT-----AAACTTTTTTAAAAATCC
* * **
10818040 TTTCGAAACCCTAGAGTTAGATCTAGGGACAAAACACCCAAAAAAGGCTGAGATCGA-TGAAAAA
186 TTTCCAAACCCTAAAGTTAGATCTAGGGACAAAACACCCAAAAAAGGCCAAGAT-GAGTG-AAAA
* ** * * * **
10818104 AGAAAAGGGAAGAAGAGACCATTTGATTTCTTCCCTCTCCGAAAAGGCCCTTAACGGAACCCCAA
249 A-AAAAGGGAAAAAGAGACCATGCGATTTCTTCCCTATCCGAAAAGACCCTCAACAAAACCCCAA
** * * * *
10818169 AGGGTTTCGAGGCTTCTCAAATCGGAGGTTGCTCTCGACGACGGC-TCTTAACAGGTAAAAATTT
313 AGGGTTTCGAAACTTCTCAAATCGGACGTAGCTCTCGACGAC-ACATCTTAAAAGGTAAAAATTT
**
10818233 AAACTTTATTTTTATTCTTATTTTTTCGTAATAAAAA
377 AAACTTTATTTTTATTCTTATTTTTTCAAAATAAAAA
10818270 AA
1 AA
10818272 TAAATAAAAT
Statistics
Matches: 348, Mismatches: 58, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
411 4 0.01
412 84 0.24
413 31 0.09
414 8 0.02
415 15 0.04
416 56 0.16
417 14 0.04
418 135 0.39
419 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (413 bp):
AAGTTAAAATGTTAAAAAATCATTTTTATCAGTTTAAAAAAAAATCTATTCCCTTTCATTTTTCT
TCTCTCAAATCCCCTCTTCCCCTCCGGCCACAAAACCGACGCACACCACTGCAGCCACCAGTCAT
CCGCGCCGACGACCAGCACCTCCAGTGATCGGAAAATAAACTTTTTTAAAAATCCTTTCCAAACC
CTAAAGTTAGATCTAGGGACAAAACACCCAAAAAAGGCCAAGATGAGTGAAAAAAAAAGGGAAAA
AGAGACCATGCGATTTCTTCCCTATCCGAAAAGACCCTCAACAAAACCCCAAAGGGTTTCGAAAC
TTCTCAAATCGGACGTAGCTCTCGACGACACATCTTAAAAGGTAAAAATTTAAACTTTATTTTTA
TTCTTATTTTTTCAAAATAAAAA
Found at i:10818749 original size:12 final size:11
Alignment explanation
Indices: 10818734--10818763 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
10818724 TTTAGTGGAC
10818734 TTTTATTATTAT
1 TTTTATTATT-T
10818746 TTTTATTATTT
1 TTTTATTATTT
10818757 TTTTATT
1 TTTTATT
10818764 TGGTTGGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.44
12 10 0.56
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTATTATTT
Found at i:10819127 original size:94 final size:93
Alignment explanation
Indices: 10819006--10820723 Score: 1688
Period size: 94 Copynumber: 18.3 Consensus size: 93
10818996 CTTGCTCCAT
* * * *
10819006 TGCAACTTCAAGGGTGTAGGATTTGTAGCTTCATCTTGCGCAACTACAACTTCAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* ** *
10819071 TTCGCCATTGTAGTTTCATTTCAACCCAC
66 TTCGCTATTGTAACTTCA-TTCGACCCAC
* *
10819100 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTTCTCCACTACAACTTCAAGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * *
10819165 TTCGCTATTTTAGCTTCAATCTGACCCAC
66 TTCGCTATTGTAACTTCATTC-GACCCAC
* * * * * *
10819194 TACAACTTCAGGGGTATAGGATTTATAACTTTATCTTGTTCCACTACAACTTCAGTGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * * * *
10819259 TTCACTATTATAATTTCAATTCAACCAAC
66 TTCGCTATTGTAACTTC-ATTCGACCCAC
** * *
10819288 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGGAACTTTAGGGAGATAATA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * *
10819353 TTCGCTATTGTAGCTTCAATTTGACCCAT
66 TTCGCTATTGTAACTTC-ATTCGACCCAC
* * * *
10819382 TGCAACTTCAGGAGTATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTTAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * *
10819447 TTCACTATTGTAGCTTCAATCTGACCCAC
66 TTCGCTATTGTAACTTCATTC-GACCCAC
* * * * * *
10819476 TACAACTTAAGGAGTATAGGATTTGTAGCTTTATCTTGCTCCACTGCAACTTTAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * * *
10819541 TTTGCTATTGTAGCTTTAATCTGACCCAC
66 TTCGCTATTGTAACTTCATTC-GACCCAC
* * * * * * *
10819570 TGCAACTTTAGGGGTATAGGATTTGTAGCTTTATCTTACTCTATTGCAACTTTAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * * * * *
10819635 TTCACTATGGTAACTTTAATCCAACCCAT
66 TTCGCTATTGTAAC-TTCATTCGACCCAC
* * * ** *
10819664 TGTAACTTC-CGGGTATAGGATTTGTAGCTTCATCTTGCTTCACTGTAACTTCAGGGAGATAGGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * * *
10819728 CTCGCTACTGTAATTTCAATCCGACCCAC
66 TTCGCTATTGTAACTTC-ATTCGACCCAC
* * * * * * * *
10819757 TGGAACTTCAAGGGTATAGAATTGGTAGCTTTATCTTACTCCACTGCAACTTCAGGGAGACAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * * *
10819822 TTTGCTATTGTAGCTTCAATCCGGCCCAC
66 TTCGCTATTGTAACTTC-ATTCGACCCAC
* * *
10819851 TCCAACTTCAAGGGTATAGGATTTGTAGCTTTATCTTGCTCCACTACAACTTCAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * * *
10819916 TTCGCTATGGTAACTTCAATCTAATCCAC
66 TTCGCTATTGTAACTTCATTC-GACCCAC
* * * **
10819945 TGCAACTTCAGGGGTATAGGATTTGTTGCTTCATCTTGGTCCACTATAACTTCAGTAAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* *
10820010 TTCGCTATGGTAACTTCAATCTGACCCAC
66 TTCGCTATTGTAACTTCATTC-GACCCAC
* * *
10820039 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGTTCCACTACAACTTCAGTGAGATGAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * * * * *
10820104 TTCGCTATGGCAACTTTAATCTAACCTAC
66 TTCGCTATTGTAACTTCATTC-GACCCAC
** * * *
10820133 TTTAA-TTCAGGGGTATAGGATTTGTAGCTTCATCTTCCTCC-TTACAACTTAAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * *
10820196 TTCACTATGGTAACTTCAATCTGACCCAC
66 TTCGCTATTGTAACTTCATTC-GACCCAC
* * * * * * * *
10820225 TACATCTTCAGGGGTATAGGATTTGTAGTTTCATATTGCTCTACTAGAAATTCATGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
** * *
10820290 TTTACT-TGGTAACTTCAATCTGACCCAC
66 TTCGCTATTGTAACTTCATTC-GACCCAC
* * * * * *
10820318 TGTAACTTCAGGGGTATAGGTTTTGTAGCTTCATCTTGTTCCACTCCAACTTTAGGGAGATTAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * *
10820383 TTCGCTATGGTAACTTCAATCTGATCCAC
66 TTCGCTATTGTAACTTCATTC-GACCCAC
* * * * **
10820412 TACAACTTTAGGGGTATAAGATTTGTAGCTTCATCTTGCTCCACTACAATTTCAATGACG-TAAG
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGA-GATAAG
* *
10820476 ATTTC-CTATGGTAACTTCAATCCGACCCAC
65 A-TTCGCTATTGTAACTTC-ATTCGACCCAC
* * * * * * **
10820506 TGTAACTTCAGGGGTATA-GATTTTGTAGCTTTATCTTGCTCCATTATAAGTTTAGCAAGATAAG
1 TGCAACTTCAGGGGTATAGGA-TTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAG
* * * *
10820570 ATTTGCTATGGTAACGTCAATCCGACCCAC
65 ATTCGCTATTGTAACTTC-ATTCGACCCAC
* * * *
10820600 TACAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTG-TGCACTGCAACTTCAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * ** *
10820664 TTTGCCATTGTAGTTTCATTCTGACTCAC
66 TTCGCTATTGTAACTTCATTC-GACCCAC
* * *
10820693 TACAACTTCAAGGGTATAGGACTTGTAGCTT
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTT
10820724 GAATCCGACC
Statistics
Matches: 1370, Mismatches: 236, Indels: 37
0.83 0.14 0.02
Matches are distributed among these distances:
92 49 0.04
93 290 0.21
94 1016 0.74
95 15 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (93 bp):
TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
TTCGCTATTGTAACTTCATTCGACCCAC
Found at i:10819284 original size:188 final size:188
Alignment explanation
Indices: 10819006--10820723 Score: 1858
Period size: 188 Copynumber: 9.2 Consensus size: 188
10818996 CTTGCTCCAT
* * * *
10819006 TGCAACTTCAAGGGTGTAGGATTTGTAGCTTCATCTTGCGCAACTACAACTTCAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * ** * * *
10819071 TTCGCCATTGTAGTTTCATTTCAACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCT
66 TTCGCTATGGTAACTTCAATTCGACCCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATCT
* * * *
10819136 TTCTCCACTACAACTTCAAGGAGATAAGATTCGCTATTTTAGCTTCAATCTGACCCAC
131 TGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATTGTAACTTCAATCTGACCCAC
* * * * * *
10819194 TACAACTTCAGGGGTATAGGATTTATAACTTTATCTTGTTCCACTACAACTTCAGTGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* ** * * * *
10819259 TTCACTATTATAATTTCAATTCAACCAACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCT
66 TTCGCTATGGTAACTTCAATTCGACCCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATCT
** * * * * *
10819324 TGCTCCACTGGAACTTTAGGGAGATAATATTCGCTATTGTAGCTTCAATTTGACCCAT
131 TGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATTGTAACTTCAATCTGACCCAC
* * * *
10819382 TGCAACTTCAGGAGTATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTTAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * * * * *
10819447 TTCACTATTGTAGCTTCAA-TCTGACCCACTACAACTTAAGGAGTATAGGATTTGTAGCTTTATC
66 TTCGCTATGGTAACTTCAATTC-GACCCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATC
* * * * *
10819511 TTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATTGTAGCTTTAATCTGACCCAC
130 TTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATTGTAACTTCAATCTGACCCAC
* * * * * * *
10819570 TGCAACTTTAGGGGTATAGGATTTGTAGCTTTATCTTACTCTATTGCAACTTTAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * * * * ** *
10819635 TTCACTATGGTAACTTTAATCCAACCCATTGTAACTTC-CGGGTATAGGATTTGTAGCTTCATCT
66 TTCGCTATGGTAACTTCAATTCGACCCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATCT
* ** * * * * *
10819699 TGCTTCACTGTAACTTCAGGGAGATAGGACTCGCTACTGTAATTTCAATCCGACCCAC
131 TGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATTGTAACTTCAATCTGACCCAC
* * * * * * * *
10819757 TGGAACTTCAAGGGTATAGAATTGGTAGCTTTATCTTACTCCACTGCAACTTCAGGGAGACAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * * * * * * *
10819822 TTTGCTATTGTAGCTTCAATCCGGCCCACTCCAACTTCAAGGGTATAGGATTTGTAGCTTTATCT
66 TTCGCTATGGTAACTTCAATTCGACCCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATCT
* * *
10819887 TGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTAATCCAC
131 TGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATTGTAACTTCAATCTGACCCAC
* * * **
10819945 TGCAACTTCAGGGGTATAGGATTTGTTGCTTCATCTTGGTCCACTATAACTTCAGTAAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
*
10820010 TTCGCTATGGTAACTTCAA-TCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATC
66 TTCGCTATGGTAACTTCAATTC-GACCCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATC
* * * * * * * *
10820074 TTGTTCCACTACAACTTCAGTGAGATGAGATTCGCTATGGCAACTTTAATCTAACCTAC
130 TTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATTGTAACTTCAATCTGACCCAC
** * * *
10820133 TTTAA-TTCAGGGGTATAGGATTTGTAGCTTCATCTTCCTCC-TTACAACTTAAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * * *
10820196 TTCACTATGGTAACTTCAA-TCTGACCCACTACATCTTCAGGGGTATAGGATTTGTAGTTTCATA
66 TTCGCTATGGTAACTTCAATTC-GACCCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATC
* * * * ** *
10820260 TTGCTCTACTAGAAATTCATGGAGATAAGATTTACT-TGGTAACTTCAATCTGACCCAC
130 TTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATTGTAACTTCAATCTGACCCAC
* * * * * *
10820318 TGTAACTTCAGGGGTATAGGTTTTGTAGCTTCATCTTGTTCCACTCCAACTTTAGGGAGATTAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
* * *
10820383 TTCGCTATGGTAACTTCAA-TCTGATCCACTACAACTTTAGGGGTATAAGATTTGTAGCTTCATC
66 TTCGCTATGGTAACTTCAATTC-GACCCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATC
* ** * *
10820447 TTGCTCCACTACAATTTCAATGACG-TAAGATTTC-CTATGGTAACTTCAATCCGACCCAC
130 TTGCTCCACTACAACTTCAGGGA-GATAAGA-TTCGCTATTGTAACTTCAATCTGACCCAC
* * * * * * **
10820506 TGTAACTTCAGGGGTATA-GATTTTGTAGCTTTATCTTGCTCCATTATAAGTTTAGCAAGATAAG
1 TGCAACTTCAGGGGTATAGGA-TTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAG
* * * *
10820570 ATTTGCTATGGTAACGTCAATCCGACCCACTACAACTTCAGGGGTATAGGATTTGTAGTTTCATC
65 ATTCGCTATGGTAACTTCAATTCGACCCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATC
* * * * ** * *
10820635 TTG-TGCACTGCAACTTCAGGGAGATAAGATTTGCCATTGTAGTTTCATTCTGACTCAC
130 TTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATTGTAACTTCAATCTGACCCAC
* * *
10820693 TACAACTTCAAGGGTATAGGACTTGTAGCTT
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTT
10820724 GAATCCGACC
Statistics
Matches: 1294, Mismatches: 222, Indels: 29
0.84 0.14 0.02
Matches are distributed among these distances:
185 22 0.02
186 139 0.11
187 352 0.27
188 779 0.60
189 2 0.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (188 bp):
TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA
TTCGCTATGGTAACTTCAATTCGACCCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATCT
TGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATTGTAACTTCAATCTGACCCAC
Found at i:10819389 original size:50 final size:51
Alignment explanation
Indices: 10819310--10819582 Score: 228
Period size: 50 Copynumber: 5.7 Consensus size: 51
10819300 GGTATAGGAT
*
10819310 TTGTAGCTTC-ATCTTGCTCCACTGGAACTTTAGGGAGATAATATTCGCTA
1 TTGTAGCTTCAATCTTGCTCCACTGCAACTTTAGGGAGATAATATTCGCTA
* * * *
10819360 TTGTAGCTTCAAT-TTGAC-CCATTGCAACTTCA-GGAG-T-ATA--GGAT-
1 TTGTAGCTTCAATCTTG-CTCCACTGCAACTTTAGGGAGATAATATTCGCTA
* * *
10819404 TTGTAGCTTC-ATCTTGCTCTACTGCAACTTTAGGGAGATAAGATTCACTA
1 TTGTAGCTTCAATCTTGCTCCACTGCAACTTTAGGGAGATAATATTCGCTA
* * * *
10819454 TTGTAGCTTCAATC-TGAC-CCACTACAAC-TTAAGGAG-T-ATA--GGAT-
1 TTGTAGCTTCAATCTTG-CTCCACTGCAACTTTAGGGAGATAATATTCGCTA
* * *
10819498 TTGTAGCTT-TATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTA
1 TTGTAGCTTCAATCTTGCTCCACTGCAACTTTAGGGAGATAATATTCGCTA
*
10819548 TTGTAGCTTTAATC-TGAC-CCACTGCAACTTTAGGG
1 TTGTAGCTTCAATCTTG-CTCCACTGCAACTTTAGGG
10819583 GTATAGGATT
Statistics
Matches: 175, Mismatches: 26, Indels: 44
0.71 0.11 0.18
Matches are distributed among these distances:
43 7 0.04
44 44 0.25
45 14 0.08
46 2 0.01
47 9 0.05
48 2 0.01
49 14 0.08
50 72 0.41
51 11 0.06
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (51 bp):
TTGTAGCTTCAATCTTGCTCCACTGCAACTTTAGGGAGATAATATTCGCTA
Found at i:10819463 original size:282 final size:282
Alignment explanation
Indices: 10819006--10820749 Score: 1865
Period size: 282 Copynumber: 6.2 Consensus size: 282
10818996 CTTGCTCCAT
* * * * *
10819006 TGCAACTTCAAGGGTGTAGGATTTGTAGCTTCATCTTGCGCAACTACAACTTCAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGA
* * ** *
10819071 TTCGCCATTGTAGTTTC-ATTTCAACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATC
66 TTCGCTATGGTAACTTCAATCT-AACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATC
* * * ** *
10819135 TTTCTCCACTACAACTTCAAGGAGATAAGATTCGCTATTTTAGCTTCAATCTGACCCACTACAAC
130 TTGCTCCACTATAACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTGACCCACTACAAC
* * * * *
10819200 TTCAGGGGTATAGGATTTATAACTTTATCTTGTTCCACTACAACTTCAGTGAGATAAGATTCACT
195 TTCAGGGGTATAGGATTTGTAGCTTTATCTTGTTCCACTGCAACTTCAGGGAGATAAGATTCGCT
*
10819265 ATTATAATTTCAATTC-AACCAAC
260 ATTGTAATTTCAATTCTAACC-AC
** *
10819288 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGGAACTTTAGGGAGATAATA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGA
* * * * * *
10819353 TTCGCTATTGTAGCTTCAATTTGACCCATTGCAACTTCAGGAGTATAGGATTTGTAGCTTCATCT
66 TTCGCTATGGTAACTTCAATCTAACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCT
* ** * * * *
10819418 TGCTCTACTGCAACTTTAGGGAGATAAGATTCACTATTGTAGCTTCAATCTGACCCACTACAACT
131 TGCTCCACTATAACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTGACCCACTACAACT
* * * * *
10819483 TAAGGAGTATAGGATTTGTAGCTTTATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTA
196 TCAGGGGTATAGGATTTGTAGCTTTATCTTGTTCCACTGCAACTTCAGGGAGATAAGATTCGCTA
* *
10819548 TTGTAGCTTT-AA-TCTGACCCAC
261 TTGTA-ATTTCAATTCT-AACCAC
* * * * * *
10819570 TGCAACTTTAGGGGTATAGGATTTGTAGCTTTATCTTACTCTATTGCAACTTTAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGA
* * * * * *
10819635 TTCACTATGGTAACTTTAATCCAACCCATTGTAACTTC-CGGGTATAGGATTTGTAGCTTCATCT
66 TTCGCTATGGTAACTTCAATCTAACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCT
* * * * * * **
10819699 TGCTTCACTGTAACTTCAGGGAGATAGGACTCGCTACT-GTAATTTCAATCCGACCCACTGGAAC
131 TGCTCCACTATAACTTCAGGGAGATAAGATTCGCTA-TGGTAACTTCAATCTGACCCACTACAAC
* * * ** * *
10819763 TTCAAGGGTATAGAATTGGTAGCTTTATCTTACTCCACTGCAACTTCAGGGAGACAAGATTTGCT
195 TTCAGGGGTATAGGATTTGTAGCTTTATCTTGTTCCACTGCAACTTCAGGGAGATAAGATTCGCT
** * ***
10819828 ATTGTAGCTTCAATCCGGCCCAC
260 ATTGTAATTTCAATTCTAACCAC
* * * *
10819851 TCCAACTTCAAGGGTATAGGATTTGTAGCTTTATCTTGCTCCACTACAACTTCAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGA
* *
10819916 TTCGCTATGGTAACTTCAATCTAATCCACTGCAACTTCAGGGGTATAGGATTTGTTGCTTCATCT
66 TTCGCTATGGTAACTTCAATCTAACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCT
* ** *
10819981 TGGTCCACTATAACTTCAGTAAGATAAGATTCGCTATGGTAACTTCAATCTGACCCACTGCAACT
131 TGCTCCACTATAACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTGACCCACTACAACT
* * * *
10820046 TCAGGGGTATAGGATTTGTAGCTTCATCTTGTTCCACTACAACTTCAGTGAGATGAGATTCGCTA
196 TCAGGGGTATAGGATTTGTAGCTTTATCTTGTTCCACTGCAACTTCAGGGAGATAAGATTCGCTA
* *
10820111 TGGCAACTTT-AA-TCTAACCTAC
261 TTGTAA-TTTCAATTCTAACC-AC
** * * *
10820133 TTTAA-TTCAGGGGTATAGGATTTGTAGCTTCATCTTCCTCC-TTACAACTTAAGGGAGATAAGA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGA
* * * * * *
10820196 TTCACTATGGTAACTTCAATCTGACCCACTACATCTTCAGGGGTATAGGATTTGTAGTTTCATAT
66 TTCGCTATGGTAACTTCAATCTAACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCT
* * * * ** **
10820261 TGCTCTACTAGAAATTCATGGAGATAAGATTTACT-TGGTAACTTCAATCTGACCCACTGTAACT
131 TGCTCCACTATAACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTGACCCACTACAACT
* * * * *
10820325 TCAGGGGTATAGGTTTTGTAGCTTCATCTTGTTCCACTCCAACTTTAGGGAGATTAGATTCGCTA
196 TCAGGGGTATAGGATTTGTAGCTTTATCTTGTTCCACTGCAACTTCAGGGAGATAAGATTCGCTA
* * *
10820390 TGGTAACTTCAA-TCTGATCCAC
261 TTGTAATTTCAATTCT-AACCAC
* * * **
10820412 TACAACTTTAGGGGTATAAGATTTGTAGCTTCATCTTGCTCCACTACAA-TTTCAATGACG-TAA
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTT-AGGGA-GATAA
** * *
10820475 GATTTC-CTATGGTAACTTCAATCCGACCCACTGTAACTTCAGGGGTATA-GATTTTGTAGCTTT
64 GA-TTCGCTATGGTAACTTCAATCTAACCCACTGCAACTTCAGGGGTATAGGA-TTTGTAGCTTC
* * * ** * * *
10820538 ATCTTGCTCCATTATAAGTTTAGCAAGATAAGATTTGCTATGGTAACGTCAATCCGACCCACTAC
127 ATCTTGCTCCACTATAACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTGACCCACTAC
*
10820603 AACTTCAGGGGTATAGGATTTGTAG-TTTCATCTTG-TGCACTGCAACTTCAGGGAGATAAGATT
192 AACTTCAGGGGTATAGGATTTGTAGCTTT-ATCTTGTTCCACTGCAACTTCAGGGAGATAAGATT
* * * *
10820666 TGCCATTGTAGTTTC-ATTCTGACTCAC
256 CGCTATTGTAATTTCAATTCTAAC-CAC
* * * * *
10820693 TACAACTTCAAGGGTATAGGACTTGTAGCTTGAATC-CGAC-CCACTACAACTTTAGGG
1 TGCAACTTCAGGGGTATAGGATTTGTAGCTT-CATCTTG-CTCCACTACAACTTTAGGG
10820750 GTATAGGATT
Statistics
Matches: 1233, Mismatches: 203, Indels: 53
0.83 0.14 0.04
Matches are distributed among these distances:
278 2 0.00
279 103 0.08
280 147 0.12
281 443 0.36
282 526 0.43
283 12 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (282 bp):
TGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGA
TTCGCTATGGTAACTTCAATCTAACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCT
TGCTCCACTATAACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTGACCCACTACAACT
TCAGGGGTATAGGATTTGTAGCTTTATCTTGTTCCACTGCAACTTCAGGGAGATAAGATTCGCTA
TTGTAATTTCAATTCTAACCAC
Found at i:10819593 original size:50 final size:49
Alignment explanation
Indices: 10819328--10819655 Score: 198
Period size: 44 Copynumber: 6.9 Consensus size: 49
10819318 TCATCTTGCT
* * * *
10819328 CCACTGGAACTTTAGGGAGATAATATTCGCTATTGTAGCTTCAATTTGAC
1 CCACTGCAACTTTAGGGAGATAAGATT-GCTATTGTAGCTTTAATCTGAC
* * * *
10819378 CCATTGCAACTTCA-GGAG-TATAG---GAT-TTGTAGC-TTCATCTTG-C
1 CCACTGCAACTTTAGGGAGATA-AGATTGCTATTGTAGCTTTAATC-TGAC
* * *
10819421 TCTACTGCAACTTTAGGGAGATAAGATTCACTATTGTAGCTTCAATCTGAC
1 -CCACTGCAACTTTAGGGAGATAAGATT-GCTATTGTAGCTTTAATCTGAC
* * *
10819472 CCACTACAAC-TTAAGGAG-TATAG---GAT-TTGTAGCTTT-ATCTTG-C
1 CCACTGCAACTTTAGGGAGATA-AGATTGCTATTGTAGCTTTAATC-TGAC
10819515 TCCACTGCAACTTTAGGGAGATAAGATTTGCTATTGTAGCTTTAATCTGAC
1 -CCACTGCAACTTTAGGGAGATAAGA-TTGCTATTGTAGCTTTAATCTGAC
* *
10819566 CCACTGCAACTTTAGGG-G-TATAG---GAT-TTGTAGCTTT-ATCTTAC
1 CCACTGCAACTTTAGGGAGATA-AGATTGCTATTGTAGCTTTAATCTGAC
* * * * *
10819609 TCTATTGCAACTTTAGGGAGATAAGATTCACTATGGTAACTTTAATC
1 -CCACTGCAACTTTAGGGAGATAAGATT-GCTATTGTAGCTTTAATC
10819656 CAACCCATTG
Statistics
Matches: 212, Mismatches: 32, Indels: 67
0.68 0.10 0.22
Matches are distributed among these distances:
43 14 0.07
44 65 0.31
45 23 0.11
46 6 0.03
48 6 0.03
49 21 0.10
50 65 0.31
51 12 0.06
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (49 bp):
CCACTGCAACTTTAGGGAGATAAGATTGCTATTGTAGCTTTAATCTGAC
Found at i:10820048 original size:50 final size:49
Alignment explanation
Indices: 10819890--10820434 Score: 198
Period size: 50 Copynumber: 11.6 Consensus size: 49
10819880 TTTATCTTGC
*
10819890 TCCACTACAACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTAA
1 TCCACTACAACTTCA-GGAGATAAGATTCGCTATGGTAACTTCAATCTGA
* * * * *
10819940 TCCACTGCAACTTCAGGGGTATAGGATTTG-T-T-G---CTTC-ATCTTGG
1 TCCACTACAACTTCAGGAG-ATAAGATTCGCTATGGTAACTTCAATC-TGA
* *
10819984 TCCACTATAACTTCAGTAAGATAAGATTCGCTATGGTAACTTCAATCTGA
1 TCCACTACAACTTCAG-GAGATAAGATTCGCTATGGTAACTTCAATCTGA
* * * * * *
10820034 CCCACTGCAACTTCAGGGGTATAGGA-T---T-T-GTAGCTTC-ATCTTGT
1 TCCACTACAACTTCAGGAG-ATAAGATTCGCTATGGTAACTTCAATC-TGA
* * *
10820078 TCCACTACAACTTCAGTGAGATGAGATTCGCTATGGCAACTTTAATCT-A
1 TCCACTACAACTTCAG-GAGATAAGATTCGCTATGGTAACTTCAATCTGA
* ** * * *
10820127 ACCTACTTTAA-TTCAGGGGTATAGGA-T---T-T-GTAGCTTC-ATCT--
1 TCC-ACTACAACTTCAGGAG-ATAAGATTCGCTATGGTAACTTCAATCTGA
* * *
10820168 TCCTCCTTACAACTTAAGGGAGATAAGATTCACTATGGTAACTTCAATCTGA
1 TCC-AC-TACAACTTCA-GGAGATAAGATTCGCTATGGTAACTTCAATCTGA
* * * * * *
10820220 CCCACTACATCTTCAGGGGTATAGGATTTG-TA--GT---TTCATAT-TGC
1 TCCACTACAACTTCAGGAG-ATAAGATTCGCTATGGTAACTTCA-ATCTGA
* * * **
10820264 TCTACTAGAAATTCATGGAGATAAGATTTACT-TGGTAACTTCAATCTGA
1 TCCACTACAACTTCA-GGAGATAAGATTCGCTATGGTAACTTCAATCTGA
* ** * * * *
10820313 CCCACTGTAACTTCAGG-GGTATAGGTT---T-T-GTAGCTTC-ATCTTGT
1 TCCACTACAACTTCAGGAGATA-AGATTCGCTATGGTAACTTCAATC-TGA
* * *
10820357 TCCACTCCAACTTTAGGGAGATTAGATTCGCTATGGTAACTTCAATCTGA
1 TCCACTACAACTTCA-GGAGATAAGATTCGCTATGGTAACTTCAATCTGA
* *
10820407 TCCACTACAACTTTAGGGGTATAAGATT
1 TCCACTACAACTTCAGGAG-ATAAGATT
10820435 TGTAGCTTCA
Statistics
Matches: 354, Mismatches: 86, Indels: 110
0.64 0.16 0.20
Matches are distributed among these distances:
41 4 0.01
42 7 0.02
43 22 0.06
44 103 0.29
45 21 0.06
46 6 0.02
47 8 0.02
48 15 0.04
49 50 0.14
50 106 0.30
51 10 0.03
52 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34
Consensus pattern (49 bp):
TCCACTACAACTTCAGGAGATAAGATTCGCTATGGTAACTTCAATCTGA
Found at i:10820369 original size:44 final size:44
Alignment explanation
Indices: 10820321--10820465 Score: 114
Period size: 44 Copynumber: 3.2 Consensus size: 44
10820311 GACCCACTGT
* *
10820321 AACTTCAGGGGTATAGGTTTTGTAGCTTCATCTTGTTCCACTCC
1 AACTTCAGGGGTATAGGTTTTGTAGCTTCATCTTGATCCACTAC
* * *
10820365 AACTTTAGGGAG-ATTAGATTCGCTATGGTAACTTCAATC-TGATCCACTAC
1 AACTTCAGGG-GTA-TAGGTT---T-T-GTAGCTTC-ATCTTGATCCACTAC
* * * *
10820415 AACTTTAGGGGTATAAGATTTGTAGCTTCATCTTGCTCCACTAC
1 AACTTCAGGGGTATAGGTTTTGTAGCTTCATCTTGATCCACTAC
*
10820459 AATTTCA
1 AACTTCA
10820466 ATGACGTAAG
Statistics
Matches: 79, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
43 3 0.04
44 32 0.41
45 7 0.09
46 1 0.01
48 1 0.01
49 5 0.06
50 27 0.34
51 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (44 bp):
AACTTCAGGGGTATAGGTTTTGTAGCTTCATCTTGATCCACTAC
Found at i:10820745 original size:375 final size:376
Alignment explanation
Indices: 10819009--10820749 Score: 1919
Period size: 375 Copynumber: 4.6 Consensus size: 376
10818999 GCTCCATTGC
* * * * *
10819009 AACTTCAAGGGTGTAGGATTTGTAGCTTCATCTTGCGCAACTACAACTTCAGGGAGATAAGATTC
1 AACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTC
* * * ** * * * * * *
10819074 GCCATTGTAGTTTCATTTCAACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTTC
66 ACTATGGTAACTTCAATCCGACCCACTACAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTGC
* * * * *
10819139 TCCACTACAACTTCAAGGAGATAAGATTCGCTATTTTAGCTTCAATCTGACCCACTACAACTTCA
131 TCCACTGCAACTTCAGGGAGATAAGATTTGCTATTGTAGCTTCAATCTGACCCACTGCAACTTCA
* * * * * * **
10819204 GGGGTATAGGATTTATAACTTTATCTTGTTCCACTACAACTTCAGTGAGATAAGATTCACTATTA
196 GGGGTATAGGATTTGTAGCTTCATCTTGATCCACTACAACTTTAGGGAGATAAGATTCACTATGG
* * *
10819269 TAATTTCAAT-TCAACCAACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACT
261 TAACTTCAATCT-GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACT
** * * * * ** * *
10819333 GGAACTTTAGGGAGATAATATTCGCTATTGTAGCTTCAATTTGACCCATTGC
325 ACAACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCCGACCCACTGT
* * *
10819385 AACTTCAGGAGTATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTTAGGGAGATAAGATTC
1 AACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTC
* * * * *
10819450 ACTATTGTAGCTTCAATCTGACCCACTACAACTTAAGGAGTATAGGATTTGTAGCTTT-ATCTTG
66 ACTATGGTAACTTCAATCCGACCCACTACAACTTCAGGGGTATAGGATTTGTAG-TTTCATCTTG
* * *
10819514 CTCCACTGCAACTTTAGGGAGATAAGATTTGCTATTGTAGCTTTAATCTGACCCACTGCAACTTT
130 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATTGTAGCTTCAATCTGACCCACTGCAACTTC
* * * *
10819579 AGGGGTATAGGATTTGTAGCTTTATCTT-ACTCTATTGCAACTTTAGGGAGATAAGATTCACTAT
195 AGGGGTATAGGATTTGTAGCTTCATCTTGA-TCCACTACAACTTTAGGGAGATAAGATTCACTAT
* ** * * * *
10819643 GGTAACTTTAATCCAACCCATTGTAACTTC-CGGGTATAGGATTTGTAGCTTCATCTTGCTTCAC
259 GGTAACTTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCAC
** * * * *
10819707 TGTAACTTCAGGGAGATAGGACTCGCTACT-GTAATTTCAATCCGACCCACTGG
324 TACAACTTCAGGGAGATAAGATTCGCTA-TGGTAACTTCAATCCGACCCACTGT
* * * * * * * * *
10819760 AACTTCAAGGGTATAGAATTGGTAGCTTTATCTTACTCCACTGCAACTTCAGGGAGACAAGATTT
1 AACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTC
* * * * * *
10819825 GCTATTGTAGCTTCAATCCGGCCCACTCCAACTTCAAGGGTATAGGATTTGTAGCTTT-ATCTTG
66 ACTATGGTAACTTCAATCCGACCCACTACAACTTCAGGGGTATAGGATTTGTAG-TTTCATCTTG
* * * * * *
10819889 CTCCACTACAACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTAATCCACTGCAACTTC
130 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATTGTAGCTTCAATCTGACCCACTGCAACTTC
* * * * ** *
10819954 AGGGGTATAGGATTTGTTGCTTCATCTTGGTCCACTATAACTTCAGTAAGATAAGATTCGCTATG
195 AGGGGTATAGGATTTGTAGCTTCATCTTGATCCACTACAACTTTAGGGAGATAAGATTCACTATG
*
10820019 GTAACTTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGTTCCACT
260 GTAACTTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACT
* * * * ** * *
10820084 ACAACTTCAGTGAGATGAGATTCGCTATGGCAACTTTAATCTAACCTACTTT
325 ACAACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCCGACCCACTGT
* * *
10820136 AA-TTCAGGGGTATAGGATTTGTAGCTTCATCTTCCTCC-TTACAACTTAAGGGAGATAAGATTC
1 AACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTC
* * *
10820199 ACTATGGTAACTTCAATCTGACCCACTACATCTTCAGGGGTATAGGATTTGTAGTTTCATATTGC
66 ACTATGGTAACTTCAATCCGACCCACTACAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTGC
* * * * * * *
10820264 TCTACTAG-AAATTCATGGAGATAAGATTTACT-TGGTAACTTCAATCTGACCCACTGTAACTTC
131 TCCACT-GCAACTTCAGGGAGATAAGATTTGCTATTGTAGCTTCAATCTGACCCACTGCAACTTC
* * * * *
10820327 AGGGGTATAGGTTTTGTAGCTTCATCTTGTTCCACTCCAACTTTAGGGAGATTAGATTCGCTATG
195 AGGGGTATAGGATTTGTAGCTTCATCTTGATCCACTACAACTTTAGGGAGATAAGATTCACTATG
* * * *
10820392 GTAACTTCAATCTGATCCACTACAACTTTAGGGGTATAAGATTTGTAGCTTCATCTTGCTCCACT
260 GTAACTTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACT
* **
10820457 ACAATTTCAATGACG-TAAGATTTC-CTATGGTAACTTCAATCCGACCCACTGT
325 ACAACTTCAGGGA-GATAAGA-TTCGCTATGGTAACTTCAATCCGACCCACTGT
* * * * **
10820509 AACTTCAGGGGTATA-GATTTTGTAGCTTTATCTTGCTCCATTATAAGTTTAGCAAGATAAGATT
1 AACTTCAGGGGTATAGGA-TTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATT
** *
10820573 TGCTATGGTAACGTCAATCCGACCCACTACAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTG
65 CACTATGGTAACTTCAATCCGACCCACTACAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTG
* * * * * *
10820638 -TGCACTGCAACTTCAGGGAGATAAGATTTGCCATTGTAGTTTCATTCTGACTCACTACAACTTC
130 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATTGTAGCTTCAATCTGACCCACTGCAACTTC
* * * * *
10820702 AAGGGTATAGGACTTGTAGCTTGAATC-CGACCCACTACAACTTTAGGG
195 AGGGGTATAGGATTTGTAGCTT-CATCTTGATCCACTACAACTTTAGGG
10820750 GTATAGGATT
Statistics
Matches: 1148, Mismatches: 200, Indels: 35
0.83 0.14 0.03
Matches are distributed among these distances:
373 189 0.16
374 156 0.14
375 487 0.42
376 314 0.27
377 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (376 bp):
AACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTC
ACTATGGTAACTTCAATCCGACCCACTACAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTGC
TCCACTGCAACTTCAGGGAGATAAGATTTGCTATTGTAGCTTCAATCTGACCCACTGCAACTTCA
GGGGTATAGGATTTGTAGCTTCATCTTGATCCACTACAACTTTAGGGAGATAAGATTCACTATGG
TAACTTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTA
CAACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCCGACCCACTGT
Found at i:10833604 original size:48 final size:48
Alignment explanation
Indices: 10833533--10833628 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
10833523 AGCATTATAA
10833533 CTTAGTCTACCGATGGGTGGGCTAGTCATCACGGGATCAACAGTGGTT
1 CTTAGTCTACCGATGGGTGGGCTAGTCATCACGGGATCAACAGTGGTT
*
10833581 CTTAGTCTACCGATGGGTGGGCTAGTCATCACGGGATCAGCAGTGGTT
1 CTTAGTCTACCGATGGGTGGGCTAGTCATCACGGGATCAACAGTGGTT
10833629 TCGAAGAAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.20, C:0.21, G:0.32, T:0.27
Consensus pattern (48 bp):
CTTAGTCTACCGATGGGTGGGCTAGTCATCACGGGATCAACAGTGGTT
Found at i:10842461 original size:21 final size:22
Alignment explanation
Indices: 10842432--10842472 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
10842422 CTTTTCTCTC
* *
10842432 CTTTAACTTTTCTTTTTTTTTT
1 CTTTAACTTTCCTTTATTTTTT
10842454 CTTT-ACTTTCCTTTATTTT
1 CTTTAACTTTCCTTTATTTT
10842473 CCTTTACAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.73
Consensus pattern (22 bp):
CTTTAACTTTCCTTTATTTTTT
Found at i:10842533 original size:13 final size:13
Alignment explanation
Indices: 10842515--10842540 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10842505 AAGTCGATTG
10842515 AAATGATAAAATT
1 AAATGATAAAATT
10842528 AAATGATAAAATT
1 AAATGATAAAATT
10842541 CATTATATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (13 bp):
AAATGATAAAATT
Found at i:10844822 original size:230 final size:230
Alignment explanation
Indices: 10844351--10844905 Score: 604
Period size: 230 Copynumber: 2.4 Consensus size: 230
10844341 ATTAATACAT
* * * * *
10844351 ATATAACTACTATTATAATATGGATTATAATAAAAGATATAGTATTACGTGATATTATAATGTTT
1 ATATAACTATTATTATAATATAGATTATAATAAAAGATATAATATAACATGATATTATAATGTTT
* * * *
10844416 AATCATCAATGTATGTATATACACTATTAATATATTATATGATATGATATAGCATTATATAATAT
66 AATCATCAATGCATATATATAAACTATTAATATATTATATGATATGATATAACATTATATAATAT
* * *
10844481 GTAGGAGGGCTAACTTTTAAATGTACGAAAATATTAGAGACTTAAAGCATATTTCAACTAGTTTA
131 GTAGGAGGGCTAACTTTCAAATGTACGAAAATATTAGAGACCTAAAGCATATTTCAACTAGTATA
* * * * * *
10844546 ATAATAAACAATAATATCTAATGTACTCCTATTAT
196 ATAATAAAAAATAATATATAATATACTACTATAAA
*
10844581 ATATAACTATTATTATAATATAGATTATAATAAAAGATATAATATAATATGATATTATAATGTTT
1 ATATAACTATTATTATAATATAGATTATAATAAAAGATATAATATAACATGATATTATAATGTTT
*
10844646 AATCAT-AGCTGCATATATATAAACTATT-A-ATA-T-T-TGATATGATATAACATTATATAATA
66 AATCATCA-ATGCATATATATAAACTATTAATATATTATATGATATGATATAACATTATATAATA
* *
10844705 TAGTAGGAGGGCTAA-TCTTCAAATGTACGAAAAGTA-TAGGGACCTAGAGCATATTTCAACTAG
130 T-GTAGGAGGGCTAACT-TTCAAATGTACGAAAA-TATTAGAGACCTAAAGCATATTTCAACTAG
* *
10844768 TATAATAATAAAAAATAATATATAATAATATGTAGTATAAA
192 TATAATAATAAAAAATAATATATAAT-ATA-CTACTATAAA
* *
10844809 ATGTACTACTATTATATATAACTATCATTATATTATAGATTATAATAAAAGATATAATATTACAT
1 A--TA-TA--A--CTAT-T-A-T-T-A-TA-A-TATAGATTATAATAAAAGATATAATATAACAT
* **
10844874 GATATTATAATATTTAATCATTGATGCATATA
51 GATATTATAATGTTTAATCATCAATGCATATA
10844906 CATCAATAGT
Statistics
Matches: 273, Mismatches: 30, Indels: 31
0.82 0.09 0.09
Matches are distributed among these distances:
225 26 0.10
226 76 0.28
227 5 0.02
228 9 0.03
229 2 0.01
230 83 0.30
231 2 0.01
233 1 0.00
235 3 0.01
236 1 0.00
237 1 0.00
238 1 0.00
239 1 0.00
240 1 0.00
241 2 0.01
242 1 0.00
243 58 0.21
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.38
Consensus pattern (230 bp):
ATATAACTATTATTATAATATAGATTATAATAAAAGATATAATATAACATGATATTATAATGTTT
AATCATCAATGCATATATATAAACTATTAATATATTATATGATATGATATAACATTATATAATAT
GTAGGAGGGCTAACTTTCAAATGTACGAAAATATTAGAGACCTAAAGCATATTTCAACTAGTATA
ATAATAAAAAATAATATATAATATACTACTATAAA
Found at i:10844855 original size:226 final size:230
Alignment explanation
Indices: 10844353--10844833 Score: 590
Period size: 226 Copynumber: 2.1 Consensus size: 230
10844343 TAATACATAT
* * * * **
10844353 ATAACTACTATTATAATATGGATTATAATAAAAGATATAGTATTACGTGATATTATAATGTTTAA
1 ATAACTACTATTATAATATAGACTATAATAAAAGATATAATATAATATGATATTATAATGTTTAA
* * * *
10844418 TCATCAATGTATGTATATACACTATTAATATATTATATGATATGATATAGCATTATATAATATGT
66 TCATCAATGCATATATATAAACTATTAATATATTATATGATATGATATAACATTATATAATATGT
* * *
10844483 AGGAGGGCTAACTTTTAAATGTACGAAAATATTAGAGACTTAAAGCATATTTCAACTAGTTTAAT
131 AGGAGGGCTAACTTTCAAATGTACGAAAATATTAGAGACCTAAAGCATATTTCAACTAGTATAAT
* * * * *
10844548 AATAAACAATAATATCTAATGTACTCCTATTATAT
196 AATAAAAAATAATATATAATATACTCCTAGTATAA
* *
10844583 ATAACTATTATTATAATATAGATTATAATAAAAGATATAATATAATATGATATTATAATGTTTAA
1 ATAACTACTATTATAATATAGACTATAATAAAAGATATAATATAATATGATATTATAATGTTTAA
*
10844648 TCAT-AGCTGCATATATATAAACTATT-A-ATA-T-T-TGATATGATATAACATTATATAATATA
66 TCATCA-ATGCATATATATAAACTATTAATATATTATATGATATGATATAACATTATATAATAT-
* *
10844707 GTAGGAGGGCTAA-TCTTCAAATGTACGAAAAGTA-TAGGGACCTAGAGCATATTTCAACTAGTA
129 GTAGGAGGGCTAACT-TTCAAATGTACGAAAA-TATTAGAGACCTAAAGCATATTTCAACTAGTA
*
10844770 TAATAATAAAAAATAATATATAATAATA-T-GTAGTATAAA
192 TAATAATAAAAAATAATATATAAT-ATACTCCTAGTAT-AA
*
10844809 ATGTACTACTATTAT-ATATA-ACTAT
1 AT-AACTACTATTATAATATAGACTAT
10844834 CATTATATTA
Statistics
Matches: 219, Mismatches: 25, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
225 35 0.16
226 85 0.39
227 15 0.07
228 3 0.01
229 2 0.01
230 79 0.36
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.37
Consensus pattern (230 bp):
ATAACTACTATTATAATATAGACTATAATAAAAGATATAATATAATATGATATTATAATGTTTAA
TCATCAATGCATATATATAAACTATTAATATATTATATGATATGATATAACATTATATAATATGT
AGGAGGGCTAACTTTCAAATGTACGAAAATATTAGAGACCTAAAGCATATTTCAACTAGTATAAT
AATAAAAAATAATATATAATATACTCCTAGTATAA
Found at i:10845570 original size:15 final size:16
Alignment explanation
Indices: 10845550--10845583 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10845540 TAAACAATAA
*
10845550 TATGTGT-ACTATTAT
1 TATGTGTAACTATCAT
10845565 TATGTGTAACTATCAT
1 TATGTGTAACTATCAT
10845581 TAT
1 TAT
10845584 ATTATAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50
Consensus pattern (16 bp):
TATGTGTAACTATCAT
Found at i:10847437 original size:30 final size:30
Alignment explanation
Indices: 10847403--10847459 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
10847393 TTTGATATGG
*
10847403 AATTTAATAT-TGTCATAAAATATTATTAAA
1 AATTTAATATCT-TAATAAAATATTATTAAA
10847433 AATTTAATATCTTAATAAAATATTATT
1 AATTTAATATCTTAATAAAATATTATT
10847460 TTTAGCTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.46
Consensus pattern (30 bp):
AATTTAATATCTTAATAAAATATTATTAAA
Found at i:10849701 original size:42 final size:42
Alignment explanation
Indices: 10849654--10849788 Score: 128
Period size: 42 Copynumber: 3.2 Consensus size: 42
10849644 GATTTAGCCA
* * *
10849654 ATGATGCATTTATGTGCCAATATAATTGCTTTGGTATATCTG
1 ATGATGCATTTACGTGCCAATATAATTGCTTCGGTACATCTG
* * * * *
10849696 ATGATGCAATTACGTGTCAGTATATTTTCTTCGGTACATCTG
1 ATGATGCATTTACGTGCCAATATAATTGCTTCGGTACATCTG
* * * * *
10849738 ATGATGCATTTTGCGTGCCAGTATGATTGTTTCGGTTA-ATCCG
1 ATGATGCA-TTTACGTGCCAATATAATTGCTTCGG-TACATCTG
10849781 ATGATGCA
1 ATGATGCA
10849789 CTACGTGTGT
Statistics
Matches: 75, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
42 42 0.56
43 31 0.41
44 2 0.03
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (42 bp):
ATGATGCATTTACGTGCCAATATAATTGCTTCGGTACATCTG
Found at i:10849913 original size:43 final size:41
Alignment explanation
Indices: 10849776--10849920 Score: 116
Period size: 43 Copynumber: 3.4 Consensus size: 41
10849766 GTTTCGGTTA
*
10849776 ATCCGATGATGCACTACGTGTGTTAGTATGA-TTGCTTCTT-TTT
1 ATCCGATGATGCACTA--TGTGTTAGTAT-ACTTTCTT-TTGTTT
* * * **
10849819 GTCCGATGATGCATTATGTGTTCTAGTATACATTT-TTTGGTAC
1 ATCCGATGATGCACTATGTG-T-TAGTATAC-TTTCTTTTGTTT
**
10849862 ATTTGATGATGCACTATGCATGTTAGTATACTTTCTTTTGTTT
1 ATCCGATGATGCACTATG--TGTTAGTATACTTTCTTTTGTTT
10849905 ATCCGATGATGCACTA
1 ATCCGATGATGCACTA
10849921 CGGTGCAAGT
Statistics
Matches: 79, Mismatches: 15, Indels: 16
0.72 0.14 0.15
Matches are distributed among these distances:
41 4 0.05
42 6 0.08
43 64 0.81
44 3 0.04
45 2 0.03
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.44
Consensus pattern (41 bp):
ATCCGATGATGCACTATGTGTTAGTATACTTTCTTTTGTTT
Found at i:10850690 original size:26 final size:23
Alignment explanation
Indices: 10850647--10850698 Score: 68
Period size: 26 Copynumber: 2.1 Consensus size: 23
10850637 TAAGTTTCTA
10850647 TTTGGTTTTTATTTTTCCCAAAT
1 TTTGGTTTTTATTTTTCCCAAAT
*
10850670 TTTGGTATTCTTATATTTTCCCCAAT
1 TTTGGT-TT-TTAT-TTTTCCCAAAT
10850696 TTT
1 TTT
10850699 TTTGTCGTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 6 0.24
24 2 0.08
25 4 0.16
26 13 0.52
ACGTcount: A:0.17, C:0.15, G:0.08, T:0.60
Consensus pattern (23 bp):
TTTGGTTTTTATTTTTCCCAAAT
Found at i:10853199 original size:25 final size:25
Alignment explanation
Indices: 10853171--10853237 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
10853161 AACTATCTTT
* *
10853171 GATAGTATATCCTGAAACTGCTATA
1 GATAGTATATACTGAAACTACTATA
*
10853196 GATAGTATATACTGAGACTACTATA
1 GATAGTATATACTGAAACTACTATA
10853221 GATAG-ACTATACTGAAA
1 GATAGTA-TATACTGAAA
10853238 ACACTTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.30
Consensus pattern (25 bp):
GATAGTATATACTGAAACTACTATA
Found at i:10858125 original size:25 final size:25
Alignment explanation
Indices: 10858095--10858148 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
10858085 GGAAACTTTA
10858095 AAGAATAAAATATACTATTTGGCTC
1 AAGAATAAAATATACTATTTGGCTC
10858120 AAGAATAAAATATACTATTTGGCTC
1 AAGAATAAAATATACTATTTGGCTC
10858145 AAGA
1 AAGA
10858149 CAGCAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (25 bp):
AAGAATAAAATATACTATTTGGCTC
Found at i:10859897 original size:13 final size:13
Alignment explanation
Indices: 10859830--10859895 Score: 87
Period size: 13 Copynumber: 5.1 Consensus size: 13
10859820 TTTAAACCAA
10859830 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
10859843 ACTTCTCAAATGC
1 ACTTTTCAAAAGC
* *
10859856 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
10859869 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
10859882 ATTTTTCAAAAGC
1 ACTTTTCAAAAGC
10859895 A
1 A
10859896 TTGCCAAACT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:10862059 original size:19 final size:17
Alignment explanation
Indices: 10862033--10862075 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
10862023 AAAAAAAGGT
10862033 TTTGAAATTGAATAATGA
1 TTTGAAA-TGAATAATGA
*
10862051 TTTGTAAATGAATAATGT
1 TTTG-AAATGAATAATGA
10862069 TTTGAAA
1 TTTGAAA
10862076 ACGAACGACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 3 0.13
18 17 0.74
19 3 0.13
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (17 bp):
TTTGAAATGAATAATGA
Found at i:10867972 original size:23 final size:23
Alignment explanation
Indices: 10867942--10867988 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
10867932 CAAGCAGACT
10867942 TGGTTGACACATTATTTAGAATA
1 TGGTTGACACATTATTTAGAATA
10867965 TGGTTGACACATTATTTAGAATA
1 TGGTTGACACATTATTTAGAATA
10867988 T
1 T
10867989 AGCAAGCTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (23 bp):
TGGTTGACACATTATTTAGAATA
Found at i:10873162 original size:26 final size:26
Alignment explanation
Indices: 10873133--10873194 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
10873123 AAATTTTCTC
*
10873133 AAAATTTTATCAAGGGTAAA-ATCGTT
1 AAAATTTTACCAAGGGTAAATATC-TT
* * *
10873159 AAAATTTTGCCAGGGGTAAATTTCTT
1 AAAATTTTACCAAGGGTAAATATCTT
10873185 AAAATTTTAC
1 AAAATTTTAC
10873195 TGAAGTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 28 0.93
27 2 0.07
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.37
Consensus pattern (26 bp):
AAAATTTTACCAAGGGTAAATATCTT
Found at i:10882236 original size:28 final size:28
Alignment explanation
Indices: 10882204--10882303 Score: 146
Period size: 28 Copynumber: 3.6 Consensus size: 28
10882194 TAATGAGATT
* * * *
10882204 AGCACTAAGTGTGCGAGTTTAATTGTAA
1 AGCACTAAGTGTGCGAGATTGATTATTA
*
10882232 AGCACTAAGTGTGTGAGATTGATTATTA
1 AGCACTAAGTGTGCGAGATTGATTATTA
*
10882260 AGCACTAAGTGTGCGAGGTTGATTATTA
1 AGCACTAAGTGTGCGAGATTGATTATTA
10882288 AGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA
10882304 AGTTATTAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGATTGATTATTA
Found at i:10889065 original size:18 final size:17
Alignment explanation
Indices: 10889039--10889145 Score: 69
Period size: 18 Copynumber: 6.1 Consensus size: 17
10889029 CAACAGAAAC
*
10889039 TATTTTATACATATATTT
1 TATTATATA-ATATATTT
10889057 TATTATATAATATTATTT
1 TATTATATAATA-TATTT
* * *
10889075 TAAGTGT-TAACAT-TTT
1 T-ATTATATAATATATTT
*
10889091 TATGTATATGCAT-TATTT
1 TAT-TATAT-AATATATTT
*
10889109 TATTATATGCAT-TATTT
1 TATTATAT-AATATATTT
10889126 TATTATATAATATTATTT
1 TATTATATAATA-TATTT
10889144 TA
1 TA
10889146 AGTGTTAACA
Statistics
Matches: 72, Mismatches: 9, Indels: 16
0.74 0.09 0.16
Matches are distributed among these distances:
15 1 0.01
16 8 0.11
17 28 0.39
18 32 0.44
19 3 0.04
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.58
Consensus pattern (17 bp):
TATTATATAATATATTT
Found at i:10889117 original size:17 final size:17
Alignment explanation
Indices: 10889088--10889133 Score: 83
Period size: 17 Copynumber: 2.6 Consensus size: 17
10889078 GTGTTAACAT
10889088 TTTTATGTATATGCATTA
1 TTTTAT-TATATGCATTA
10889106 TTTTATTATATGCATTA
1 TTTTATTATATGCATTA
10889123 TTTTATTATAT
1 TTTTATTATAT
10889134 AATATTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 22 0.79
18 6 0.21
ACGTcount: A:0.28, C:0.04, G:0.07, T:0.61
Consensus pattern (17 bp):
TTTTATTATATGCATTA
Found at i:10894270 original size:16 final size:17
Alignment explanation
Indices: 10894244--10894294 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
10894234 GTTCAGATCC
10894244 AATTCAAAAAAAATAAA
1 AATTCAAAAAAAATAAA
*
10894261 AATT-AAAAAAATTAAAA
1 AATTCAAAAAAAAT-AAA
*
10894278 AAATCAAAATAAAATAA
1 AATTCAAAA-AAAATAA
10894295 GAGAAAAAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
16 8 0.29
17 10 0.36
18 6 0.21
19 4 0.14
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (17 bp):
AATTCAAAAAAAATAAA
Found at i:10895204 original size:7 final size:7
Alignment explanation
Indices: 10895187--10895235 Score: 57
Period size: 7 Copynumber: 7.0 Consensus size: 7
10895177 TTGAGTAAAA
10895187 AAAAGATG
1 AAAA-ATG
10895195 AAAAATG
1 AAAAATG
10895202 -AAAATG
1 AAAAATG
10895208 -AAAATG
1 AAAAATG
10895214 AAAAATG
1 AAAAATG
*
10895221 AAAAAAG
1 AAAAATG
10895228 TAAAAATG
1 -AAAAATG
10895236 GAGAGGCTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 12 0.32
7 15 0.41
8 10 0.27
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:10895208 original size:13 final size:14
Alignment explanation
Indices: 10895187--10895235 Score: 57
Period size: 13 Copynumber: 3.5 Consensus size: 14
10895177 TTGAGTAAAA
10895187 AAAAGATGAAAAATG
1 AAAA-ATGAAAAATG
10895202 -AAAATG-AAAATG
1 AAAAATGAAAAATG
*
10895214 AAAAATGAAAAAAG
1 AAAAATGAAAAATG
10895228 TAAAAATG
1 -AAAAATG
10895236 GAGAGGCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 6 0.20
13 9 0.30
14 8 0.27
15 7 0.23
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.14
Consensus pattern (14 bp):
AAAAATGAAAAATG
Found at i:10896740 original size:120 final size:120
Alignment explanation
Indices: 10896523--10896740 Score: 330
Period size: 120 Copynumber: 1.8 Consensus size: 120
10896513 ATCTTCATGA
* * ** *
10896523 GTAAGGAAGCAGATTTAAGCCACAAGTCTTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAAT
1 GTAAGGAAGAAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGAATGAGAAAT
*
10896588 TACAGATCTTGTCTCCCTAAGCAATAGCAGAGCAGATCAAATCTTATATTCAAGT
66 TACAGATCTTATCTCCCTAAGCAATAGCAGAGCAGATCAAATCTTATATTCAAGT
*
10896643 GTAAGGAAGAAGATTTAAGCCACAAGTCCTATATCCTTGGTCAGCAGTGGAATAGAATGA-AGAA
1 GTAAGGAAGAAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGAATGAGA-AA
* * *
10896707 TTTCAGATCTTATCTCCCTAAGCAGTAGTAGAGC
65 TTACAGATCTTATCTCCCTAAGCAATAGCAGAGC
10896741 TAATCGAAAA
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
119 1 0.01
120 86 0.99
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (120 bp):
GTAAGGAAGAAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGAATGAGAAAT
TACAGATCTTATCTCCCTAAGCAATAGCAGAGCAGATCAAATCTTATATTCAAGT
Found at i:10897032 original size:201 final size:201
Alignment explanation
Indices: 10896687--10897353 Score: 843
Period size: 201 Copynumber: 3.2 Consensus size: 201
10896677 CCTTGGTCAG
**
10896687 CAGTGGAATAGAATGAAGAATTTCAGATCTTATCTCCCTAAGCAGTAGTAGAGCTAATCGAAAAT
1 CAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTAAGCAGTAGTAGAGCTAATCGAAAAT
10896752 GGAATTACAGCGGAGAAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTACAGTGGAGCAGATT
66 GGAATTACAGCGGAGAAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTACAGTGGAGCAGATT
* *
10896817 AAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATTGCATCAGGTCTTATCTCCCTA
131 AAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTG
10896882 AGATTA
196 AGATTA
10896888 CAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTAAGCAGTAGTAGAGCTAATCGAAAAT
1 CAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTAAGCAGTAGTAGAGCTAATCGAAAAT
10896953 GGAATTACAGCGGAGAAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTACAGTGGAGCAGATT
66 GGAATTACAGCGGAGAAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTACAGTGGAGCAGATT
*
10897018 AAAATAAAGGATCTTATCTCTCTGAAATTACATTAGAGTAGATCGCATCAGGTCTTATCTCCCTG
131 AAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTG
10897083 AGATT-
196 AGATTA
* *
10897088 CAAGTGGAATAGACCGAAGAATTCCTAATTGAAAATGGTGAATCTTATCTCCCTGATATTACAGT
1 C-AGTGGAATAGACCGAAGAA----T--TT---CA----G-ATCTTATCTCCCT-A-A--GCAGT
* * * * * * *
10897153 -GGAGCAGATTGAAGCCAGAAATCTTATCTCCCTGATATTACAGCGGAGCAGATTGAAGCCAGCA
47 AGTAG-AG-CT-AA-TC-GAAA----A--T---GGA-ATTACAGCGGAGAAGATTGAAGCTAGTA
* * *
10897217 ATCCTATTTCCTTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
97 ATCCTATTTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAATTAC
*
10897282 AGTAGAATAGATCGCATCAGGTCTTATCTCCCTGAGATTA
162 AGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTA
*
10897322 CAGTGGAATAGACCGAAGAATTACAGATCTTA
1 CAGTGGAATAGACCGAAGAATTTCAGATCTTA
10897354 CTTCTCAAGC
Statistics
Matches: 410, Mismatches: 21, Indels: 52
0.85 0.04 0.11
Matches are distributed among these distances:
200 1 0.00
201 214 0.52
205 1 0.00
207 2 0.00
210 1 0.00
214 1 0.00
215 13 0.03
216 1 0.00
217 1 0.00
218 3 0.01
219 12 0.03
220 2 0.00
221 2 0.00
222 1 0.00
223 4 0.01
224 1 0.00
227 2 0.00
229 2 0.00
232 2 0.00
233 143 0.35
234 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (201 bp):
CAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTAAGCAGTAGTAGAGCTAATCGAAAAT
GGAATTACAGCGGAGAAGATTGAAGCTAGTAATCCTATTTCCCTGAGATTACAGTGGAGCAGATT
AAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTG
AGATTA
Found at i:10897179 original size:44 final size:44
Alignment explanation
Indices: 10897128--10897250 Score: 183
Period size: 44 Copynumber: 2.8 Consensus size: 44
10897118 GAAAATGGTG
10897128 AATCTTATCTCCCTGATATTACAGTGGAGCAGATTGAAGCCAGA
1 AATCTTATCTCCCTGATATTACAGTGGAGCAGATTGAAGCCAGA
* *
10897172 AATCTTATCTCCCTGATATTACAGCGGAGCAGATTGAAGCCAGC
1 AATCTTATCTCCCTGATATTACAGTGGAGCAGATTGAAGCCAGA
* * * * *
10897216 AATCCTATTTCCTTGAGATTACAGTGGAGCGGATT
1 AATCTTATCTCCCTGATATTACAGTGGAGCAGATT
10897251 AAAATAAAGG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGATATTACAGTGGAGCAGATTGAAGCCAGA
Found at i:10897420 original size:50 final size:49
Alignment explanation
Indices: 10897366--10897515 Score: 131
Period size: 50 Copynumber: 3.0 Consensus size: 49
10897356 TCTCAAGCGG
* **
10897366 TGCAGTGGAACAGATTAACGCCACAACAACGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAAAAGATTAA-GCCACAACAGTGAATCTTGCTTCCCCGACAT
* * * * * * **
10897416 TGCAGT-TAAAAGGATTAAAGCTACAATAGTGAATCTTACTTCCCAGGCGG
1 TGCAGTGGAAAA-GATT-AAGCCACAACAGTGAATCTTGCTTCCCCGACAT
* * *
10897466 TGCAGTGGAATAGATTGAAGCCACAACGGTGAATCTTGCTTCCTCGACAT
1 TGCAGTGGAAAAGATT-AAGCCACAACAGTGAATCTTGCTTCCCCGACAT
10897516 CACAATCAAG
Statistics
Matches: 74, Mismatches: 23, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
49 3 0.04
50 66 0.89
51 5 0.07
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (49 bp):
TGCAGTGGAAAAGATTAAGCCACAACAGTGAATCTTGCTTCCCCGACAT
Found at i:10898983 original size:3 final size:3
Alignment explanation
Indices: 10898977--10899045 Score: 75
Period size: 3 Copynumber: 23.0 Consensus size: 3
10898967 TATCATCATC
* * * *
10898977 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ACT ACT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
10899025 ACT ATT ATT AGT GTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT
10899046 TATATTAGTT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:10908716 original size:15 final size:15
Alignment explanation
Indices: 10908687--10908715 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10908677 TATTATATAA
10908687 CAACACTTATATTTT
1 CAACACTTATATTTT
10908702 CAACACTTAT-TTTT
1 CAACACTTATATTTT
10908716 TAATTTATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.31, C:0.21, G:0.00, T:0.48
Consensus pattern (15 bp):
CAACACTTATATTTT
Found at i:10916612 original size:3 final size:3
Alignment explanation
Indices: 10916604--10916646 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
10916594 TATCAAACAC
10916604 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
10916647 TAAAATATCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:10918177 original size:16 final size:17
Alignment explanation
Indices: 10918150--10918182 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10918140 AAGAATTGGG
*
10918150 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
10918167 TTGAG-AAATTAATTAA
1 TTGAGAAAATTAATTAA
10918183 GTTAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:10923320 original size:99 final size:99
Alignment explanation
Indices: 10923193--10923380 Score: 313
Period size: 99 Copynumber: 1.9 Consensus size: 99
10923183 ACTTCTCACT
*
10923193 TTAAGTCCCTCATATTTCTCCACTTATTCAATTTGGTCCCTACACACCAATCTCATGTTACAAGA
1 TTAAGTCCCTCATATTTCTCCACTTATTCAATTTGGTCCCTACACACCAATCCCATGTTACAAGA
*
10923258 AATTGGGTTATTTTTACTCTTGGTAAAATTACAA
66 AATTGGGTTATTTTCACTCTTGGTAAAATTACAA
* * * *
10923292 TTAAGTCCGTTATATTTCTCCACTTATTCAATTTGGTCCTTACACACTAATCCCATGTTACAAGA
1 TTAAGTCCCTCATATTTCTCCACTTATTCAATTTGGTCCCTACACACCAATCCCATGTTACAAGA
*
10923357 AATTGGGTTATTTTCACTTTTGGT
66 AATTGGGTTATTTTCACTCTTGGT
10923381 CCTTCAATTT
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
99 82 1.00
ACGTcount: A:0.27, C:0.21, G:0.11, T:0.40
Consensus pattern (99 bp):
TTAAGTCCCTCATATTTCTCCACTTATTCAATTTGGTCCCTACACACCAATCCCATGTTACAAGA
AATTGGGTTATTTTCACTCTTGGTAAAATTACAA
Found at i:10926123 original size:18 final size:17
Alignment explanation
Indices: 10926100--10926135 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
10926090 TAAATATTTA
10926100 ATTTAAAATAACATAAAT
1 ATTTAAAATAA-ATAAAT
10926118 ATTTAAAATAAATAAAT
1 ATTTAAAATAAATAAAT
10926135 A
1 A
10926136 ATAACATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (17 bp):
ATTTAAAATAAATAAAT
Found at i:10926129 original size:23 final size:21
Alignment explanation
Indices: 10926090--10926136 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
10926080 ATAAATTTAT
**
10926090 TAAATATTTAATTTAAAATAACA
1 TAAATATTTAAAAT-AAATAA-A
10926113 TAAATATTTAAAATAAATAAA
1 TAAATATTTAAAATAAATAAA
10926134 TAA
1 TAA
10926137 TAACATGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 4 0.18
22 6 0.27
23 12 0.55
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
TAAATATTTAAAATAAATAAA
Found at i:10926730 original size:21 final size:21
Alignment explanation
Indices: 10926687--10926731 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
10926677 GTTTAGACTC
* *
10926687 TCAACTCCCATATGTTTACAA
1 TCAACTCCCAAATCTTTACAA
10926708 TCAACTCCCAAACTCTTTA-AA
1 TCAACTCCCAAA-TCTTTACAA
10926729 TCA
1 TCA
10926732 TTAATTACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.36, C:0.31, G:0.02, T:0.31
Consensus pattern (21 bp):
TCAACTCCCAAATCTTTACAA
Found at i:10928291 original size:13 final size:14
Alignment explanation
Indices: 10928256--10928293 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
10928246 GACTAAATTA
10928256 ATTTGTAAATTTATT
1 ATTT-TAAATTTATT
10928271 ATTTTAAATTTATT
1 ATTTTAAATTTATT
*
10928285 ATTTAAAAT
1 ATTTTAAAT
10928294 ATTTAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 18 0.82
15 4 0.18
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (14 bp):
ATTTTAAATTTATT
Found at i:10934693 original size:23 final size:22
Alignment explanation
Indices: 10934667--10934712 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
10934657 TTAAAATTGC
10934667 AAATATATAAAAAAAATAATTAA
1 AAATATATAAAAAAAA-AATTAA
*
10934690 AAATATATATAAAAAAAATTAA
1 AAATATATAAAAAAAAAATTAA
10934712 A
1 A
10934713 CAAACTTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (22 bp):
AAATATATAAAAAAAAAATTAA
Found at i:10936342 original size:44 final size:44
Alignment explanation
Indices: 10936294--10936478 Score: 116
Period size: 44 Copynumber: 4.2 Consensus size: 44
10936284 ACTAACGCTT
*
10936294 AAGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAA-CC
1 AAGGAGATAAGATCTGAAATCTTCAATCTACTCCACTG-CAACCC
* * *
10936338 AAGGAGAT-AGAATTACTG---GCTTCAATGTACTCCACTGTAACCTC
1 AAGGAGATAAG-A-T-CTGAAATCTTCAATCTACTCCACTGCAACC-C
* * * ** ** * *
10936382 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCTACT--AATGCCT
1 AAGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGCAA--CCC
*
10936426 AAGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAA-CC
1 AAGGAGATAAGATCTGAAATCTTCAATCTACTCCACTG-CAACCC
10936470 AAGGAGATA
1 AAGGAGATA
10936479 GAATTACTGG
Statistics
Matches: 104, Mismatches: 23, Indels: 28
0.67 0.15 0.18
Matches are distributed among these distances:
42 5 0.05
43 22 0.21
44 55 0.53
45 17 0.16
46 3 0.03
47 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (44 bp):
AAGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGCAACCC
Found at i:10936365 original size:263 final size:264
Alignment explanation
Indices: 10936038--10936552 Score: 834
Period size: 263 Copynumber: 2.0 Consensus size: 264
10936028 NNNNNNNAAG
** *** *
10936038 TAAGATCTTTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGT
1 TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGT
* * *
10936103 ACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGTCTAGGGA
66 ACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAAGGA
* ** * *
10936168 GATAAGATCTGTAATCTTCAAACTATTCCACTG-CTGCCCAGGGGATAGAATTACTGGCTTCAAT
131 GATAAGATCTGAAATCTTCAAACTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAAT
* * *
10936232 GTACTCCACTGTAATCTCAGGGAGGTAAAATCTACCATCTTCGATCTGCTCCACTAACGCTTAAG
196 GTACTCCACTGTAACCACAGGGAGATAAAATCTACCATCTTCGATCTGCTCCACTAACGCTTAAG
10936297 GAGA
261 GAGA
10936301 TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGT
1 TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGT
* *
10936366 ACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCTACTAATGCCTAAGGA
66 ACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAAGGA
*
10936431 GATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAAT
131 GATAAGATCTGAAATCTTCAAACTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAAT
*
10936496 GTACTCCACTGTAACCACAGGGAGATAAAATCTGCCATCTTCGATCTGCTCCACTAA
196 GTACTCCACTGTAACCACAGGGAGATAAAATCTACCATCTTCGATCTGCTCCACTAA
10936553 TGCCTAGGGN
Statistics
Matches: 230, Mismatches: 21, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
263 150 0.65
264 80 0.35
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (264 bp):
TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGT
ACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTAATGCCTAAGGA
GATAAGATCTGAAATCTTCAAACTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAAT
GTACTCCACTGTAACCACAGGGAGATAAAATCTACCATCTTCGATCTGCTCCACTAACGCTTAAG
GAGA
Found at i:10936556 original size:132 final size:132
Alignment explanation
Indices: 10936038--10936558 Score: 828
Period size: 132 Copynumber: 4.0 Consensus size: 132
10936028 NNNNNNNAAG
** *** *
10936038 TAAGATCTTTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGT
1 TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGT
* *
10936103 ACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGTCTAGGGA
66 ACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAAGGA
10936168 GA
131 GA
* * ** * *
10936170 TAAGATCTGTAATCTTCAAACTATTCCACTG-CTGCCCAGGGGATAGAATTACTGGCTTCAATGT
1 TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGT
* * * *
10936234 ACTCCACTGTAATCTCAGGGAGGTAAAATCTACCATCTTCGATCTGCTCCACTAACGCTTAAGGA
66 ACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAAGGA
10936299 GA
131 GA
10936301 TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGT
1 TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGT
* * *
10936366 ACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCTACTAATGCCTAAGGA
66 ACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAAGGA
10936431 GA
131 GA
10936433 TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGT
1 TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGT
* *
10936498 ACTCCACTGTAACCACAGGGAGATAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTA
66 ACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTA
10936559 GGGNNNNNNN
Statistics
Matches: 356, Mismatches: 32, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
131 117 0.33
132 239 0.67
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (132 bp):
TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGT
ACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGCCTAAGGA
GA
Found at i:10938081 original size:24 final size:24
Alignment explanation
Indices: 10938049--10938100 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
10938039 AGCCTCTCCA
*
10938049 TTTTACTTTTCCATTTTTCAT-TT
1 TTTTACTTTTCCATTTCTCATCTT
*
10938072 TTTTCACTTTTTCATTTCTCATCTT
1 TTTT-ACTTTTCCATTTCTCATCTT
10938097 TTTT
1 TTTT
10938101 TTTTTTTGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 4 0.16
24 15 0.60
25 6 0.24
ACGTcount: A:0.12, C:0.19, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTTACTTTTCCATTTCTCATCTT
Found at i:10938595 original size:1 final size:1
Alignment explanation
Indices: 10938580--10938658 Score: 68
Period size: 1 Copynumber: 79.0 Consensus size: 1
10938570 CCAGTGGAAG
* * * * * * * * *
10938580 TTTTTTGTTTCTTTTTGTTTTTGTGTTTTTTTTCTTTTTTTTTCTTTTTTTTTTGTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
10938645 TTTTTTATTTTTTT
1 TTTTTTTTTTTTTT
10938659 GGATTGAATC
Statistics
Matches: 58, Mismatches: 20, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 58 1.00
ACGTcount: A:0.01, C:0.04, G:0.08, T:0.87
Consensus pattern (1 bp):
T
Found at i:10938596 original size:10 final size:9
Alignment explanation
Indices: 10938580--10938659 Score: 76
Period size: 9 Copynumber: 8.8 Consensus size: 9
10938570 CCAGTGGAAG
10938580 TTTTTTGTT
1 TTTTTTGTT
10938589 TCTTTTTG-T
1 T-TTTTTGTT
*
10938598 TTTTGTGTT
1 TTTTTTGTT
*
10938607 TTTTTTCTT
1 TTTTTTGTT
10938616 TTTTTT-TCT
1 TTTTTTGT-T
*
10938625 TTTTTTTTT
1 TTTTTTGTT
10938634 GTTTTTTGTT
1 -TTTTTTGTT
10938644 TTTTTT-TAT
1 TTTTTTGT-T
10938653 TTTTTTG
1 TTTTTTG
10938660 GATTGAATCT
Statistics
Matches: 60, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
8 7 0.12
9 38 0.63
10 15 0.25
ACGTcount: A:0.01, C:0.04, G:0.09, T:0.86
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:10938632 original size:37 final size:36
Alignment explanation
Indices: 10938587--10938658 Score: 108
Period size: 38 Copynumber: 1.9 Consensus size: 36
10938577 AAGTTTTTTG
*
10938587 TTTCTTTTTGTTTTTGTGTTTTTTTTCTTTTTTTTTCT
1 TTTCTTTTTGTTTTT-TGTTTTTTTT-TATTTTTTTCT
*
10938625 TTTTTTTTTGTTTTTTGTTTTTTTTTATTTTTTT
1 TTTCTTTTTGTTTTTTGTTTTTTTTTATTTTTTT
10938659 GGATTGAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 8 0.25
37 10 0.31
38 14 0.44
ACGTcount: A:0.01, C:0.04, G:0.07, T:0.88
Consensus pattern (36 bp):
TTTCTTTTTGTTTTTTGTTTTTTTTTATTTTTTTCT
Found at i:10938656 original size:18 final size:17
Alignment explanation
Indices: 10938580--10938659 Score: 88
Period size: 18 Copynumber: 4.4 Consensus size: 17
10938570 CCAGTGGAAG
*
10938580 TTTTTTGTTTCTTTTTGT
1 TTTTTTGTTT-TTTTTTT
*
10938598 TTTTGTGTTTTTTTTCTTT
1 TTTTTTG-TTTTTTT-TTT
*
10938617 TTTTTTCTTTTTTTTTT
1 TTTTTTGTTTTTTTTTT
10938634 GTTTTTTGTTTTTTTTTAT
1 -TTTTTTGTTTTTTTTT-T
10938653 TTTTTTG
1 TTTTTTG
10938660 GATTGAATCT
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
17 3 0.06
18 39 0.74
19 11 0.21
ACGTcount: A:0.01, C:0.04, G:0.09, T:0.86
Consensus pattern (17 bp):
TTTTTTGTTTTTTTTTT
Found at i:10947590 original size:19 final size:19
Alignment explanation
Indices: 10947566--10947603 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
10947556 TGGGCCACGT
10947566 TGGGCTGAAATGGG-TCGTG
1 TGGGCT-AAATGGGCTCGTG
*
10947585 TGGGCTCAATGGGCTCGTG
1 TGGGCTAAATGGGCTCGTG
10947604 AGGCCCATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.13, C:0.16, G:0.45, T:0.26
Consensus pattern (19 bp):
TGGGCTAAATGGGCTCGTG
Found at i:10947871 original size:27 final size:27
Alignment explanation
Indices: 10947834--10948048 Score: 141
Period size: 27 Copynumber: 8.0 Consensus size: 27
10947824 GAGAGCCCAA
* *
10947834 AATA-GGTAAAATAACTAAAATACCTT
1 AATAGGGTAAAATAACTGAAATACCCT
*
10947860 AATAGGGTAAAATGA-TCGAAATACCCT
1 AATAGGGTAAAATAACT-GAAATACCCT
* * *
10947887 TATAGGGTAAAATGACTGAAATACCCC
1 AATAGGGTAAAATAACTGAAATACCCT
* *
10947914 CATAGGGTAAAATAACCGAAATACCCT
1 AATAGGGTAAAATAACTGAAATACCCT
* * * *
10947941 CATAGGGTAAAATGA-TCAAAATGTCCC-
1 AATAGGGTAAAATAACT-GAAAT-ACCCT
* * * * *
10947968 CATAGGGTAGAATGACCGAAATACCCC
1 AATAGGGTAAAATAACTGAAATACCCT
* * * * *
10947995 CATAGGATAAAATGACAGAAATACCCC
1 AATAGGGTAAAATAACTGAAATACCCT
* * **
10948022 GATAGGGTAAAATGACTGTTATACCCT
1 AATAGGGTAAAATAACTGAAATACCCT
10948049 TAGGAGATGA
Statistics
Matches: 156, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
26 8 0.05
27 144 0.92
28 4 0.03
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (27 bp):
AATAGGGTAAAATAACTGAAATACCCT
Found at i:10947897 original size:54 final size:54
Alignment explanation
Indices: 10947838--10948037 Score: 242
Period size: 54 Copynumber: 3.7 Consensus size: 54
10947828 GCCCAAAATA
* *** * *
10947838 GGTAAAATAACTAAAATACCTTAATAGGGTAAAATGATCGAAATACCCTTATAG
1 GGTAAAATGACTAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAG
* *
10947892 GGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACCGAAATACCCTCATAG
1 GGTAAAATGACTAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAG
** * *
10947946 GGTAAAATGA-TCAAAATGTCCCCATAGGGTAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACT-AAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAG
* *
10948000 GATAAAATGAC-AGAAATACCCCGATAGGGTAAAATGAC
1 GGTAAAATGACTA-AAATACCCCCATAGGGTAAAATGAC
10948038 TGTTATACCC
Statistics
Matches: 124, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
53 2 0.02
54 122 0.98
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.20
Consensus pattern (54 bp):
GGTAAAATGACTAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAG
Found at i:10947973 original size:81 final size:81
Alignment explanation
Indices: 10947838--10948036 Score: 260
Period size: 81 Copynumber: 2.5 Consensus size: 81
10947828 GCCCAAAATA
* * * *
10947838 GGTAAAATAACTA-AAATACCTTAATAGGGTAAAATGATCGAAATACCCTTATAGGGTAAAATGA
1 GGTAAAATAAC-AGAAATACCCTCATAGGGTAAAATGATCAAAATACCCTCATAGGGTAAAATGA
*
10947902 CTGAAATACCCCCATAG
65 CCGAAATACCCCCATAG
* * *
10947919 GGTAAAATAACCGAAATACCCTCATAGGGTAAAATGATCAAAATGTCCC-CATAGGGTAGAATGA
1 GGTAAAATAACAGAAATACCCTCATAGGGTAAAATGATCAAAAT-ACCCTCATAGGGTAAAATGA
10947983 CCGAAATACCCCCATAG
65 CCGAAATACCCCCATAG
* *
10948000 GATAAAATGACAGAAATACCC-CGATAGGGTAAAATGA
1 GGTAAAATAACAGAAATACCCTC-ATAGGGTAAAATGA
10948037 CTGTTATACC
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
80 1 0.01
81 100 0.96
82 3 0.03
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.20
Consensus pattern (81 bp):
GGTAAAATAACAGAAATACCCTCATAGGGTAAAATGATCAAAATACCCTCATAGGGTAAAATGAC
CGAAATACCCCCATAG
Found at i:10955472 original size:6 final size:6
Alignment explanation
Indices: 10955463--10955506 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
10955453 GGTTTTTCTT
* * *
10955463 TTTTTC TTTTTC TTTTTC TTTTTC TTCTTC TTCTTC TTCTTC TT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TT
10955507 CCTTTTCCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTC
Found at i:10955507 original size:6 final size:6
Alignment explanation
Indices: 10955466--10955537 Score: 58
Period size: 6 Copynumber: 12.0 Consensus size: 6
10955456 TTTTCTTTTT
* * *
10955466 TTCTTT TTCTTT TTCTTT TTCTTC TTCTTC TTCTTC TTCTTCC TT-TTC
1 TTCTTC TTCTTC TTCTTC TTCTTC TTCTTC TTCTTC TTCTT-C TTCTTC
* * *
10955514 CTCTT- TCTCTTC CTCTTC CTCTTC
1 TTCTTC T-TCTTC TTCTTC TTCTTC
10955538 CTTAAGTGGA
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
5 2 0.03
6 53 0.91
7 3 0.05
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (6 bp):
TTCTTC
Found at i:10955538 original size:6 final size:6
Alignment explanation
Indices: 10955485--10955539 Score: 65
Period size: 6 Copynumber: 9.2 Consensus size: 6
10955475 TTTTTCTTTT
* * * * *
10955485 TCTTCT TCTTCT TCTTCT TCTTCC TTTTCC TCTTTC TCTTCC TCTTCC
1 TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC
10955533 TCTTCC T
1 TCTTCC T
10955540 TAAGTGGAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (6 bp):
TCTTCC
Found at i:10956365 original size:27 final size:27
Alignment explanation
Indices: 10956321--10956392 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
10956311 CACGACAAGT
* *
10956321 AAGAATAGCCTTTGTGGCGAACTCTGA
1 AAGAATAGCCTTTGTGGCAAACTCTAA
*
10956348 AAGAATAG-CTTGTTTGGCAAACTCTAA
1 AAGAATAGCCTT-TGTGGCAAACTCTAA
*
10956375 AAGGAAT-GCCTTGGTGGC
1 AA-GAATAGCCTTTGTGGC
10956393 GTACTCTATG
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
26 3 0.08
27 27 0.73
28 7 0.19
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (27 bp):
AAGAATAGCCTTTGTGGCAAACTCTAA
Found at i:10960273 original size:6 final size:6
Alignment explanation
Indices: 10960262--10960294 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
10960252 AATTTTATGT
10960262 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAA
10960295 TTCATTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:10975169 original size:26 final size:26
Alignment explanation
Indices: 10975108--10975170 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
10975098 TGGTTCTCTA
* * *
10975108 ACCAACTCAAACTCAAGGGTCCTTTG
1 ACCAACTTAAACTCAAGAGACCTTTG
*
10975134 ACCAATTTAAACTCAAGAGACCTTTG
1 ACCAACTTAAACTCAAGAGACCTTTG
10975160 ACCAACTTAAA
1 ACCAACTTAAA
10975171 TCGAAGGATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.38, C:0.27, G:0.11, T:0.24
Consensus pattern (26 bp):
ACCAACTTAAACTCAAGAGACCTTTG
Found at i:10992575 original size:24 final size:24
Alignment explanation
Indices: 10992548--10992594 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
10992538 TTTTTAATTT
* *
10992548 TTGTTTGGGTTTAGATAAATGATA
1 TTGTTTAGATTTAGATAAATGATA
*
10992572 TTGTTTAGATTTGGATAAATGAT
1 TTGTTTAGATTTAGATAAATGAT
10992595 TTTTGTTGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (24 bp):
TTGTTTAGATTTAGATAAATGATA
Found at i:10992672 original size:23 final size:23
Alignment explanation
Indices: 10992640--10992723 Score: 60
Period size: 23 Copynumber: 3.5 Consensus size: 23
10992630 AACTTTGTGT
10992640 TTGGGCTTGGTTGGGTTATATTA
1 TTGGGCTTGGTTGGGTTATATTA
* *** * * *
10992663 TTGGGTTTGGTATATATAACTTTGTGT
1 TTGGGCTTGGT-TGGGTTA-TAT-T-A
10992690 TTGGGCTTGGTTGGGTTATATTA
1 TTGGGCTTGGTTGGGTTATATTA
*
10992713 TTGGGTTTGGT
1 TTGGGCTTGGT
10992724 ATATATTATA
Statistics
Matches: 42, Mismatches: 15, Indels: 8
0.65 0.23 0.12
Matches are distributed among these distances:
23 20 0.48
24 4 0.10
25 4 0.10
26 4 0.10
27 10 0.24
ACGTcount: A:0.13, C:0.04, G:0.33, T:0.50
Consensus pattern (23 bp):
TTGGGCTTGGTTGGGTTATATTA
Found at i:10992674 original size:50 final size:50
Alignment explanation
Indices: 10992611--10992729 Score: 238
Period size: 50 Copynumber: 2.4 Consensus size: 50
10992601 TGGGTAAAAC
10992611 TATTGGGTTTGGTATATATAACTTTGTGTTTGGGCTTGGTTGGGTTATAT
1 TATTGGGTTTGGTATATATAACTTTGTGTTTGGGCTTGGTTGGGTTATAT
10992661 TATTGGGTTTGGTATATATAACTTTGTGTTTGGGCTTGGTTGGGTTATAT
1 TATTGGGTTTGGTATATATAACTTTGTGTTTGGGCTTGGTTGGGTTATAT
10992711 TATTGGGTTTGGTATATAT
1 TATTGGGTTTGGTATATAT
10992730 TATATTTATA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.17, C:0.03, G:0.29, T:0.50
Consensus pattern (50 bp):
TATTGGGTTTGGTATATATAACTTTGTGTTTGGGCTTGGTTGGGTTATAT
Found at i:10992699 original size:27 final size:27
Alignment explanation
Indices: 10992613--10992700 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
10992603 GGTAAAACTA
*
10992613 TTGGGTTTGGTATATATAACTTTGTGT
1 TTGGGCTTGGTATATATAACTTTGTGT
*** * * *
10992640 TTGGGCTTGGT-TGGGTTA-TAT-T-A
1 TTGGGCTTGGTATATATAACTTTGTGT
*
10992663 TTGGGTTTGGTATATATAACTTTGTGT
1 TTGGGCTTGGTATATATAACTTTGTGT
10992690 TTGGGCTTGGT
1 TTGGGCTTGGT
10992701 TGGGTTATAT
Statistics
Matches: 42, Mismatches: 15, Indels: 8
0.65 0.23 0.12
Matches are distributed among these distances:
23 10 0.24
24 4 0.10
25 4 0.10
26 4 0.10
27 20 0.48
ACGTcount: A:0.15, C:0.05, G:0.31, T:0.50
Consensus pattern (27 bp):
TTGGGCTTGGTATATATAACTTTGTGT
Found at i:10993060 original size:40 final size:40
Alignment explanation
Indices: 10992930--10993047 Score: 155
Period size: 40 Copynumber: 3.0 Consensus size: 40
10992920 TTTATGACAA
* * * *
10992930 AAAAATGCCGCAAAAGGTTGAGCATTAGTGGTGCTTTTTG
1 AAAAATGCCGCCATAGATCGAGCATTAGTGGTGCTTTTTG
* * *
10992970 AAAAATGCCGCCATAGATCAAGCATTAGTAGCGCTTTTTG
1 AAAAATGCCGCCATAGATCGAGCATTAGTGGTGCTTTTTG
* *
10993010 AAAAATGCCGCTATAGATCGAGCATTAGCGGTGCTTTT
1 AAAAATGCCGCCATAGATCGAGCATTAGTGGTGCTTTT
10993048 CAGAAAACGC
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (40 bp):
AAAAATGCCGCCATAGATCGAGCATTAGTGGTGCTTTTTG
Found at i:10993214 original size:40 final size:40
Alignment explanation
Indices: 10993105--10993202 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
10993095 AGCTTTAGTG
10993105 GCATTAGCGGCGCTTTTTAAAAAACGCCG-TAATAGATCGA
1 GCATTAGCGGCGCTTTTT-AAAAACGCCGCTAATAGATCGA
* * * *
10993145 GCATTAGCTGCTCTATTTTCAAAATGCCGCT-ATAGATCGA
1 GCATTAGCGGCGCT-TTTTAAAAACGCCGCTAATAGATCGA
10993185 GCATTAGCGGCGCTTTTT
1 GCATTAGCGGCGCTTTTT
10993203 GGAAAAGGCC
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
39 4 0.08
40 41 0.82
41 5 0.10
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTAAAAACGCCGCTAATAGATCGA
Found at i:10993231 original size:154 final size:152
Alignment explanation
Indices: 10992951--10993466 Score: 558
Period size: 151 Copynumber: 3.4 Consensus size: 152
10992941 AAAAGGTTGA
* * * * ** * *
10992951 GCATTAGTGGTGCTTTTTGAAAAATGCCGCCATAGATCAAGCATTAG-TAGCGCTTTTTGAAAAA
1 GCATTAGCGGCGCTTTTTAAAAAACGCCGTAATAGATCGAGCATTAGCT-GCGCTTTTT-CAAAA
* *
10993015 TGCCGCTATAGATCGAGCATTAGCGGTGCTTTTCAGAAAACGCCGCAAAAAAGTTGAGCAAAACA
64 TGCCGCTATAGATCGAGCATTAGCGGCGCTTTT-TGAAAACGCCGCAAAAAAGTTGAGCAAAACA
10993080 GGTCGTTTGTTGTTGAGCTTTAGTG
128 GGTCGTTTGTTGTTGAGCTTTAGTG
*
10993105 GCATTAGCGGCGCTTTTTAAAAAACGCCGTAATAGATCGAGCATTAGCTGCTCTATTTTCAAAAT
1 GCATTAGCGGCGCTTTTTAAAAAACGCCGTAATAGATCGAGCATTAGCTGCGCT-TTTTCAAAAT
* *
10993170 GCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGGAAAAGGCCGCAAAAAAATTGAGCAAAAC-G
65 GCCGCTATAGATCGAGCATTAGCGGCGCTTTTT-GAAAACGCCGCAAAAAAGTTGAGCAAAACAG
* *
10993234 ATAC---TGTTGTTAAGCTTTAGTG
129 GT-CGTTTGTTGTTGAGCTTTAGTG
* * * * * * *
10993256 GCATTAGTGGTGATTTTTAAAAAACTCCGTAATAGATCGAGAATTAGCGGCGC-TTGTCAAAAAA
1 GCATTAGCGGCGCTTTTTAAAAAACGCCGTAATAGATCGAGCATTAGCTGCGCTTTTTC--AAAA
* * * * * *
10993320 TGTCGTTATAGATCGAGCATTAGTGGCACTTTTTTAGAAACGTCGCAAAAAAGTTGAGCAAAACG
64 TGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGA-AAACGCCGCAAAAAAGTTGAGCAAAAC-
* * *
10993385 ACGTTGTTTGTTTTTGAGCTTTAGTG
127 AGGTCGTTTGTTGTTGAGCTTTAGTG
* * * * * *
10993411 GCATTAGCGGCGCTTTTTAAAAAAATGTCGCAATAGATTGAGAATTAGCGGCGCTT
1 GCATTAGCGGCGCTTTTT-AAAAAACGCCGTAATAGATCGAGCATTAGCTGCGCTT
10993467 GTTGAAAAAC
Statistics
Matches: 304, Mismatches: 44, Indels: 25
0.82 0.12 0.07
Matches are distributed among these distances:
149 4 0.01
150 1 0.00
151 121 0.40
153 3 0.01
154 108 0.36
155 36 0.12
156 30 0.10
157 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (152 bp):
GCATTAGCGGCGCTTTTTAAAAAACGCCGTAATAGATCGAGCATTAGCTGCGCTTTTTCAAAATG
CCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAACGCCGCAAAAAAGTTGAGCAAAACAGGT
CGTTTGTTGTTGAGCTTTAGTG
Found at i:10993517 original size:115 final size:115
Alignment explanation
Indices: 10993298--10993520 Score: 277
Period size: 116 Copynumber: 1.9 Consensus size: 115
10993288 TAGATCGAGA
* ** * * * * * *
10993298 ATTAGCGGCGCTTGTCAAAAAATGTCGTTATAGATCGAGCATTAGTGGCACTTTTTTAGAAACGT
1 ATTAGCGGCGCTTGTAAAAAAATGTCGCAATAGATCGAGAATTAGCGGCACTTGTTGAAAAACGC
* * * *
10993363 CGCAAAAAAGTTGAGCAAAACGACGTTGTTTGTTTTTGAGCTTTAGTGGC
66 CACAAAAAAGTTAAGCAAAACGACGTCGTTTGTTATTGAGCTTTAGTGGC
* * *
10993413 ATTAGCGGCGCTTTTTAAAAAAATGTCGCAATAGATTGAGAATTAGCGGCGCTTGTTGAAAAACG
1 ATTAGCGGCGC-TTGTAAAAAAATGTCGCAATAGATCGAGAATTAGCGGCACTTGTTGAAAAACG
*
10993478 CCACAAAAAAGTTAAG-AAAATGACGTCGTTTGTTATTGAGCTT
65 CCACAAAAAAGTTAAGCAAAACGACGTCGTTTGTTATTGAGCTT
10993521 AAAAACGTCG
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
115 35 0.39
116 55 0.61
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.30
Consensus pattern (115 bp):
ATTAGCGGCGCTTGTAAAAAAATGTCGCAATAGATCGAGAATTAGCGGCACTTGTTGAAAAACGC
CACAAAAAAGTTAAGCAAAACGACGTCGTTTGTTATTGAGCTTTAGTGGC
Found at i:10993685 original size:21 final size:21
Alignment explanation
Indices: 10993645--10993685 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10993635 TAGAGTTTTT
* *
10993645 AGTTTAGGGTTTATGATTTAG
1 AGTTTAAGGTTTAGGATTTAG
*
10993666 AGTTTAAGGTTTAGGGTTTA
1 AGTTTAAGGTTTAGGATTTA
10993686 TTATTTTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.46
Consensus pattern (21 bp):
AGTTTAAGGTTTAGGATTTAG
Found at i:10993875 original size:7 final size:7
Alignment explanation
Indices: 10993847--10993898 Score: 52
Period size: 7 Copynumber: 7.6 Consensus size: 7
10993837 TTGTAATATA
*
10993847 TTTAGGA
1 TTTAGGG
10993854 TTTAGGG
1 TTTAGGG
*
10993861 TGTA-GG
1 TTTAGGG
*
10993867 TTTATGG
1 TTTAGGG
*
10993874 TTTGGGG
1 TTTAGGG
*
10993881 TTTAAGG
1 TTTAGGG
10993888 TTTAGGG
1 TTTAGGG
10993895 TTTA
1 TTTA
10993899 TGATTTAATA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
6 5 0.14
7 31 0.86
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:10993882 original size:14 final size:14
Alignment explanation
Indices: 10993847--10993905 Score: 57
Period size: 14 Copynumber: 4.3 Consensus size: 14
10993837 TTGTAATATA
* *
10993847 TTTAGGATTTAGGG
1 TTTAGGGTTTATGG
*
10993861 TGTA-GGTTTATGG
1 TTTAGGGTTTATGG
* *
10993874 TTTGGGGTTTAAGG
1 TTTAGGGTTTATGG
*
10993888 TTTAGGGTTTATGA
1 TTTAGGGTTTATGG
10993902 TTTA
1 TTTA
10993906 ATATTAAGAG
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
13 9 0.26
14 26 0.74
ACGTcount: A:0.19, C:0.00, G:0.34, T:0.47
Consensus pattern (14 bp):
TTTAGGGTTTATGG
Found at i:10994317 original size:40 final size:40
Alignment explanation
Indices: 10994262--10994339 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
10994252 GTTTTTAGTG
* *
10994262 GCATTAGCGGCGCTAGGTGAAAAACGCCGCAAAAGGTCGA
1 GCATTAGAGGCGCTAGGAGAAAAACGCCGCAAAAGGTCGA
*
10994302 GCATTAGAGGCGCTAGGAGAAAAACGCCTCAAAAGGTC
1 GCATTAGAGGCGCTAGGAGAAAAACGCCGCAAAAGGTC
10994340 ATTTTGTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.35, C:0.22, G:0.31, T:0.13
Consensus pattern (40 bp):
GCATTAGAGGCGCTAGGAGAAAAACGCCGCAAAAGGTCGA
Found at i:10994512 original size:18 final size:18
Alignment explanation
Indices: 10994457--10994512 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
10994447 TCCCAACCCA
*
10994457 TCTGTTGCATCGCCTTCC
1 TCTGTTGCATCGCCCTCC
*
10994475 TATGTTGCATCGCCCTCC
1 TCTGTTGCATCGCCCTCC
*
10994493 TCTGATGCATCGCCCTCC
1 TCTGTTGCATCGCCCTCC
10994511 TC
1 TC
10994513 GACCCGACCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.09, C:0.41, G:0.16, T:0.34
Consensus pattern (18 bp):
TCTGTTGCATCGCCCTCC
Found at i:10998098 original size:45 final size:45
Alignment explanation
Indices: 10998049--10998146 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 45
10998039 TAGTCAATGA
* * *
10998049 TACTCGGTGGAATTAACACATAGCAATCACCTTCATAATCAATAG
1 TACTCGGTGGAATTAACACACAGCAACCACATTCATAATCAATAG
* ** *
10998094 TACTCGGTGGAATTAGCATGCAGCAACCACATTCATAATCAATGG
1 TACTCGGTGGAATTAACACACAGCAACCACATTCATAATCAATAG
*
10998139 TACCCGGT
1 TACTCGGT
10998147 ACACGTAGTA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (45 bp):
TACTCGGTGGAATTAACACACAGCAACCACATTCATAATCAATAG
Found at i:11003667 original size:23 final size:23
Alignment explanation
Indices: 11003615--11003669 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
11003605 AAGTTAATTA
11003615 TTAATTT-ATGAATGTATATTTT
1 TTAATTTAATGAATGTATATTTT
* *
11003637 TAATATTTAATGCAAT-TTTATTTT
1 TTA-ATTTAATG-AATGTATATTTT
11003661 TTAATTTAA
1 TTAATTTAA
11003670 AAATATTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
22 2 0.07
23 10 0.37
24 12 0.44
25 3 0.11
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (23 bp):
TTAATTTAATGAATGTATATTTT
Found at i:11003965 original size:20 final size:20
Alignment explanation
Indices: 11003929--11003966 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
11003919 AAAGATAAAG
*
11003929 ATTAAGAACAGAGAAGAAGA
1 ATTAAGAACAGAAAAGAAGA
11003949 ATTACAGAA-AGAAAAGAA
1 ATTA-AGAACAGAAAAGAA
11003967 TGAGAAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.63, C:0.05, G:0.21, T:0.11
Consensus pattern (20 bp):
ATTAAGAACAGAAAAGAAGA
Found at i:11009749 original size:43 final size:43
Alignment explanation
Indices: 11009699--11009803 Score: 183
Period size: 43 Copynumber: 2.4 Consensus size: 43
11009689 TTTTAGAAAT
* *
11009699 AAACGCCGCTATAGATCATGACCTTTAGCGGCGTTTTTCCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCAC
*
11009742 AAACGCCGCTATAGATCAGGAGCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCAC
11009785 AAACGCCGCTATAGATCAG
1 AAACGCCGCTATAGATCAG
11009804 AATTTAAAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCAC
Found at i:11009833 original size:15 final size:17
Alignment explanation
Indices: 11009813--11009845 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
11009803 GAATTTAAAA
11009813 AAATAAT-TTT-TTTCT
1 AAATAATATTTATTTCT
11009828 AAATAATATTTATTTCT
1 AAATAATATTTATTTCT
11009845 A
1 A
11009846 TGATAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (17 bp):
AAATAATATTTATTTCT
Found at i:11010024 original size:9 final size:9
Alignment explanation
Indices: 11010010--11010035 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
11010000 AATAAATATC
11010010 ATGCTTATA
1 ATGCTTATA
11010019 ATGCTTATA
1 ATGCTTATA
11010028 ATGCTTAT
1 ATGCTTAT
11010036 TGAATTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46
Consensus pattern (9 bp):
ATGCTTATA
Found at i:11011786 original size:15 final size:15
Alignment explanation
Indices: 11011766--11011812 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
11011756 CCCCTCCTCT
11011766 TTTTTTTTCTTCTTC
1 TTTTTTTTCTTCTTC
*
11011781 TTTTTTTTCTTTTTC
1 TTTTTTTTCTTCTTC
* *
11011796 TTCTTCTTCTTCTTC
1 TTTTTTTTCTTCTTC
11011811 TT
1 TT
11011813 CTCCTTCTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTTTCTTCTTC
Found at i:11011799 original size:3 final size:3
Alignment explanation
Indices: 11011772--11011835 Score: 67
Period size: 3 Copynumber: 21.7 Consensus size: 3
11011762 CTCTTTTTTT
* * * *
11011772 TTC TTC TTC TTT TTT TTC TTT TTC TTC TTC TTC TTC TTC TTC TCC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* *
11011820 TT- TGC TTC TTT TTC TT
1 TTC TTC TTC TTC TTC TT
11011836 TTGCTGCCCA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
2 1 0.02
3 49 0.98
ACGTcount: A:0.00, C:0.27, G:0.02, T:0.72
Consensus pattern (3 bp):
TTC
Found at i:11011836 original size:6 final size:6
Alignment explanation
Indices: 11011763--11011837 Score: 53
Period size: 6 Copynumber: 12.0 Consensus size: 6
11011753 CTCCCCCTCC
* * * *
11011763 TCTTTT TTTTTCT TCTTCTT T-TTTT TCTTTT TCTTCT TCTTCT TCTTCT
1 TCTTTT TCTTT-T TCTT-TT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
**
11011812 TCTCCT TCTTTGCT TCTTTT TCTTTT
1 TCTTTT TCTTT--T TCTTTT TCTTTT
11011838 GCTGCCCAAC
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
5 3 0.05
6 42 0.72
7 6 0.10
8 7 0.12
ACGTcount: A:0.00, C:0.24, G:0.01, T:0.75
Consensus pattern (6 bp):
TCTTTT
Done.