Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 32 of 79
Found at i:11012228 original size:21 final size:20
Alignment explanation
Indices: 11012194--11012246 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
11012184 TTTGGTACTA
11012194 TCTCATATTCTTTTAATATTC
1 TCTCATATT-TTTTAATATTC
11012215 TCTCATAATTTTTTCAAT-TTC
1 TCTCAT-ATTTTTT-AATATTC
11012236 T-TCAT-TTTTTT
1 TCTCATATTTTTT
11012247 TTATACTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
18 6 0.20
20 4 0.13
21 14 0.47
22 6 0.20
ACGTcount: A:0.21, C:0.17, G:0.00, T:0.62
Consensus pattern (20 bp):
TCTCATATTTTTTAATATTC
Found at i:11013223 original size:25 final size:23
Alignment explanation
Indices: 11013195--11013240 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
11013185 CGCTATTGCT
11013195 TATGCAAAAAATTATTTCATTTTAC
1 TATGCAAAAAATT-TTT-ATTTTAC
*
11013220 TATGCTAAAAATTTTTATTTT
1 TATGCAAAAAATTTTTATTTT
11013241 GTTTTTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 3 0.15
25 12 0.60
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.50
Consensus pattern (23 bp):
TATGCAAAAAATTTTTATTTTAC
Found at i:11014181 original size:21 final size:22
Alignment explanation
Indices: 11014157--11014211 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
11014147 GACCCCGAAT
*
11014157 CTCTAAACCTTAAATCACTAA-
1 CTCTAAACCTTAAACCACTAAC
* **
11014178 CTCTTAACCCCAAACCACTAAC
1 CTCTAAACCTTAAACCACTAAC
11014200 CTCTAAACCTTA
1 CTCTAAACCTTA
11014212 TTTAATATAT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.25
Consensus pattern (22 bp):
CTCTAAACCTTAAACCACTAAC
Found at i:11014287 original size:7 final size:7
Alignment explanation
Indices: 11014275--11014301 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
11014265 GACCCCAAAT
11014275 CCCTAAC
1 CCCTAAC
11014282 CCCTAAC
1 CCCTAAC
11014289 CCCTAAC
1 CCCTAAC
11014296 CCCTAA
1 CCCTAA
11014302 ACCTTAATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.56, G:0.00, T:0.15
Consensus pattern (7 bp):
CCCTAAC
Found at i:11014317 original size:21 final size:21
Alignment explanation
Indices: 11014266--11014318 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
11014256 CCCTAACCCG
* *
11014266 ACCCCAAATCCCTAACCCCTA
1 ACCCCAAACCCCTAAACCCTA
* *
11014287 ACCCCTAACCCCTAAACCTTA
1 ACCCCAAACCCCTAAACCCTA
*
11014308 ATCCCAAACCC
1 ACCCCAAACCC
11014319 TAATCCATAC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.34, C:0.51, G:0.00, T:0.15
Consensus pattern (21 bp):
ACCCCAAACCCCTAAACCCTA
Found at i:11014738 original size:41 final size:41
Alignment explanation
Indices: 11014689--11014927 Score: 370
Period size: 41 Copynumber: 5.8 Consensus size: 41
11014679 AAATGTTTTT
* *
11014689 GCGGCGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTA
* * *
11014730 GCGACGCTTTCTAAAAAACGCCGCTAAAGATATGAGCATTA
1 GCGGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTA
11014771 GCGGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTA
**
11014812 GCGGCGCTTTCTCAAAAACGTTGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTA
* *
11014853 GCGGCGCATTCTCAAAAGCGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTA
* *
11014894 GCGGCGCTTTTTTAAAAAACGCCGCTAAAGATCT
1 GCGGCGC-TTTCTCAAAAACGCCGCTAAAGATCT
11014928 AAAAGGTACA
Statistics
Matches: 180, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
41 158 0.88
42 22 0.12
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (41 bp):
GCGGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTA
Found at i:11015046 original size:40 final size:39
Alignment explanation
Indices: 11014982--11015080 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 39
11014972 TTTTTCCAAA
* *
11014982 AAACGCCGCTAATGCT-AATTTTTAGCGGCGCTTTACTGG
1 AAACGCCGCTAATGCTCGATCTTTAGCGGCGCTTTAC-GG
* *
11015021 AAACGCCGCTAATGCTCGATCTTTAGCGGCGTTTTACGT
1 AAACGCCGCTAATGCTCGATCTTTAGCGGCGCTTTACGG
* *
11015060 AAGGCGCCGCTAATGCGCGAT
1 AA-ACGCCGCTAATGCTCGAT
11015081 TTTTTGTGGC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 19 0.37
40 33 0.63
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.27
Consensus pattern (39 bp):
AAACGCCGCTAATGCTCGATCTTTAGCGGCGCTTTACGG
Found at i:11015117 original size:12 final size:12
Alignment explanation
Indices: 11015102--11015127 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11015092 TTTTTTGTCC
11015102 AAACGCCGCTAA
1 AAACGCCGCTAA
11015114 AAACGCCGCTAA
1 AAACGCCGCTAA
11015126 AA
1 AA
11015128 GCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:11015760 original size:17 final size:17
Alignment explanation
Indices: 11015714--11015761 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 17
11015704 AGAGTTGAAT
11015714 TAAAA-CAAAATTT-TA
1 TAAAATCAAAATTTATA
*
11015729 T-ATAT-AAAA-TTATA
1 TAAAATCAAAATTTATA
11015743 TAAAATCAAAATTTATA
1 TAAAATCAAAATTTATA
11015760 TA
1 TA
11015762 TATAATTGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
13 2 0.08
14 9 0.35
15 4 0.15
16 4 0.15
17 7 0.27
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAAATCAAAATTTATA
Found at i:11015785 original size:31 final size:29
Alignment explanation
Indices: 11015714--11015797 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 29
11015704 AGAGTTGAAT
* *
11015714 TAAAA-CAAAATTTTATATATAAAATTATA
1 TAAAATCAAAA-TTTATATATATAATTACA
11015743 TAAAATCAAAATTTATATATATAATTGCACA
1 TAAAATCAAAATTTATATATATAATT--ACA
* *
11015774 TTAAATTAAAA-TTA-ATATATAATT
1 TAAAATCAAAATTTATATATATAATT
11015798 TTGAAATTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
29 29 0.60
30 8 0.17
31 11 0.23
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (29 bp):
TAAAATCAAAATTTATATATATAATTACA
Found at i:11017416 original size:26 final size:26
Alignment explanation
Indices: 11017380--11017429 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
11017370 TCTCATCCTC
11017380 ATTTTACCCCC-AGTAAAATTTTGAAT
1 ATTTTACCCCCGA-TAAAATTTTGAAT
11017406 ATTTTACCCCCGATAAAATTTTGA
1 ATTTTACCCCCGATAAAATTTTGA
11017430 GAAAATATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.38
Consensus pattern (26 bp):
ATTTTACCCCCGATAAAATTTTGAAT
Found at i:11019782 original size:24 final size:24
Alignment explanation
Indices: 11019749--11019804 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
11019739 AATTACATAG
* *
11019749 AAATATTTAA-AATTATTATATATTA
1 AAATA-TTAACAATAATT-TATAATA
11019774 AAATATTAACAATAATTTATAATA
1 AAATATTAACAATAATTTATAATA
*
11019798 AATTATT
1 AAATATT
11019805 TTTTATATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 16 0.59
25 11 0.41
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
AAATATTAACAATAATTTATAATA
Found at i:11019980 original size:13 final size:13
Alignment explanation
Indices: 11019964--11019997 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
11019954 CAAAACTTCC
11019964 CAAAAGCACTTTT
1 CAAAAGCACTTTT
*
11019977 CAAAAGTACTTTT
1 CAAAAGCACTTTT
*
11019990 CAACAGCA
1 CAAAAGCA
11019998 ATACTAAACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (13 bp):
CAAAAGCACTTTT
Found at i:11026602 original size:21 final size:20
Alignment explanation
Indices: 11026576--11026617 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
11026566 CCCCGATCTC
*
11026576 AACCACATAAACAAAGCACTT
1 AACCACAGAAACAAAG-ACTT
*
11026597 AACCACAGATACAAAGACTT
1 AACCACAGAAACAAAGACTT
11026617 A
1 A
11026618 GTTATTGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.52, C:0.26, G:0.07, T:0.14
Consensus pattern (20 bp):
AACCACAGAAACAAAGACTT
Found at i:11033059 original size:57 final size:57
Alignment explanation
Indices: 11032971--11033088 Score: 202
Period size: 57 Copynumber: 2.1 Consensus size: 57
11032961 CAATTAATAG
11032971 AGAGTTCGACACAACAGACTGTAATGGTGGCC-AGTTCTTTAGGGTTTAGAATGAAGA
1 AGAGTTCGACACAACAGACTGTAATGGTGGCCGA-TTCTTTAGGGTTTAGAATGAAGA
* *
11033028 AGAGTTCGACGCATCAGACTGTAATGGTGGCCGATTCTTTAGGGTTTAGAATGAAGA
1 AGAGTTCGACACAACAGACTGTAATGGTGGCCGATTCTTTAGGGTTTAGAATGAAGA
11033085 AGAG
1 AGAG
11033089 AATGTTTTAT
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
57 57 0.98
58 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.26
Consensus pattern (57 bp):
AGAGTTCGACACAACAGACTGTAATGGTGGCCGATTCTTTAGGGTTTAGAATGAAGA
Found at i:11037346 original size:23 final size:22
Alignment explanation
Indices: 11037320--11037364 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
11037310 AAAAAATCAC
**
11037320 GGAGGCAGCAAAAAGAAAAGAAA
1 GGAGGCAAAAAAAAG-AAAGAAA
*
11037343 GGAGGGAAAAAAAAGAAAGAAA
1 GGAGGCAAAAAAAAGAAAGAAA
11037365 AAGAAACGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.64, C:0.04, G:0.31, T:0.00
Consensus pattern (22 bp):
GGAGGCAAAAAAAAGAAAGAAA
Found at i:11048392 original size:21 final size:24
Alignment explanation
Indices: 11048354--11048398 Score: 60
Period size: 21 Copynumber: 2.0 Consensus size: 24
11048344 AAGGATAAAA
*
11048354 AATATTTACTTTTTTTGTT-TTTT
1 AATATTTACTTTTCTTGTTGTTTT
11048377 AATA-TTA-TTTTCTTGTTGTTTT
1 AATATTTACTTTTCTTGTTGTTTT
11048399 CTCCCTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 9 0.45
22 7 0.35
23 4 0.20
ACGTcount: A:0.18, C:0.04, G:0.07, T:0.71
Consensus pattern (24 bp):
AATATTTACTTTTCTTGTTGTTTT
Found at i:11054311 original size:122 final size:122
Alignment explanation
Indices: 11054164--11054409 Score: 476
Period size: 122 Copynumber: 2.0 Consensus size: 122
11054154 ATAATATAAA
11054164 ATATATATCTATTAAAAAATATTTGGTACAGAATCACGCTTCATAAACTACTATTCATAACAAAG
1 ATATATATCTATTAAAAAATATTTGGTACAGAATCACGCTTCATAAACTACTATTCATAACAAAG
11054229 TTATTGTTTAAAACAACATTAGTATGGAAATTAAAAGCAAACATCGCCCATCTTGAT
66 TTATTGTTTAAAACAACATTAGTATGGAAATTAAAAGCAAACATCGCCCATCTTGAT
11054286 ATATATATCTATTAAAAAA-ATTTTGGTACAGAATCACGCTTCATAAACTACTATTCATAACAAA
1 ATATATATCTATTAAAAAATA-TTTGGTACAGAATCACGCTTCATAAACTACTATTCATAACAAA
11054350 GTTATTGTTTAAAACAACATTAGTATGGAAATTAAAAGCAAACATCGCCCATCTTGAT
65 GTTATTGTTTAAAACAACATTAGTATGGAAATTAAAAGCAAACATCGCCCATCTTGAT
11054408 AT
1 AT
11054410 TTCCTTGTTG
Statistics
Matches: 123, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
121 1 0.01
122 122 0.99
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (122 bp):
ATATATATCTATTAAAAAATATTTGGTACAGAATCACGCTTCATAAACTACTATTCATAACAAAG
TTATTGTTTAAAACAACATTAGTATGGAAATTAAAAGCAAACATCGCCCATCTTGAT
Found at i:11057104 original size:24 final size:21
Alignment explanation
Indices: 11057063--11057109 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 21
11057053 AATTGGGTAT
11057063 TAAATAAAAAAATATTAA-TA
1 TAAATAAAAAAATATTAAGTA
11057083 TAAATAATATAAAATATTTTAAGTA
1 TAAATAA-A-AAAATA--TTAAGTA
11057108 TA
1 TA
11057110 GTAAAATACA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
20 7 0.32
21 1 0.05
22 6 0.27
24 4 0.18
25 4 0.18
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
TAAATAAAAAAATATTAAGTA
Found at i:11058627 original size:24 final size:24
Alignment explanation
Indices: 11058599--11058646 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
11058589 TTTGGTTATA
11058599 TAATTTAATCATCTTTAAAATCCT
1 TAATTTAATCATCTTTAAAATCCT
11058623 TAATTTAATCATCTTTAAAATCCT
1 TAATTTAATCATCTTTAAAATCCT
11058647 CAATCAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.46
Consensus pattern (24 bp):
TAATTTAATCATCTTTAAAATCCT
Found at i:11063879 original size:30 final size:31
Alignment explanation
Indices: 11063823--11063880 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
11063813 CTTAACAACC
*
11063823 CAGTGAATTCAATAAAAACTTTTGAATAGTT
1 CAGTGAATTAAATAAAAACTTTTGAATAGTT
* *
11063854 CAGTGACTTAAATGAAAAC-TTTGAATA
1 CAGTGAATTAAATAAAAACTTTTGAATA
11063881 ATGTAGTGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 8 0.33
31 16 0.67
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (31 bp):
CAGTGAATTAAATAAAAACTTTTGAATAGTT
Found at i:11065513 original size:50 final size:50
Alignment explanation
Indices: 11065402--11065699 Score: 269
Period size: 50 Copynumber: 5.9 Consensus size: 50
11065392 CATTTGGGTA
*
11065402 AAGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATC
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--C-TGAGA-C
* *
11065456 ATGAGAGGTCTCATGTAAGACCATGTTTGGGACATGGCATTGGCACTGAGAC
1 A--AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGAC
* * * *
11065508 AAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGAC
* ** * * * * *
11065558 GAGAGGTCCCCCGTAAGACCATGTCTGGGACATGACATGGGCACCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGAC
* ** * * * * * *
11065608 GAGAACTTCCATGTAAGACCATATCTGGGATATGACATTGGCAGTACATGA-
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACT-GA-GAC
* *
11065659 AACA--TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
11065700 TGTTACTATC
Statistics
Matches: 206, Mismatches: 34, Indels: 13
0.81 0.13 0.05
Matches are distributed among these distances:
49 32 0.16
50 122 0.59
51 3 0.01
52 3 0.01
53 5 0.02
54 2 0.01
56 39 0.19
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGAC
Found at i:11069322 original size:27 final size:27
Alignment explanation
Indices: 11069284--11069540 Score: 232
Period size: 27 Copynumber: 9.6 Consensus size: 27
11069274 ATACGATTCG
** *
11069284 TGGG-AAAATTACTAAAATACCCTCGT
1 TGGGTAAAATTACCGAAATACCCTCGA
*
11069310 TGGGTAAAATTACCGAAATACTCTCGA
1 TGGGTAAAATTACCGAAATACCCTCGA
* *
11069337 TGGGTAAAATTACCAAAATATCCTCGA
1 TGGGTAAAATTACCGAAATACCCTCGA
* * *
11069364 AGGATAAAATTATCGAAATACCCTCGA
1 TGGGTAAAATTACCGAAATACCCTCGA
* *
11069391 TGGGTAAAATTACCAAAATACCCTCAA
1 TGGGTAAAATTACCGAAATACCCTCGA
* * ** *
11069418 AGGGTCAAATTACAAAAATA-CCTCTAA
1 TGGGTAAAATTACCGAAATACCCTC-GA
* * **
11069445 AGGGTAAAATTACTGAAATACCCTTAA
1 TGGGTAAAATTACCGAAATACCCTCGA
** *
11069472 TGAATAAAATTACCGAAATACCCTTGA
1 TGGGTAAAATTACCGAAATACCCTCGA
* *
11069499 AGGGTAAAATTACTGAAATACCC-CTGA
1 TGGGTAAAATTACCGAAATACCCTC-GA
* *
11069526 AGGGTAAAATGACCG
1 TGGGTAAAATTACCG
11069541 TTATACCCCT
Statistics
Matches: 191, Mismatches: 36, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.04
27 180 0.94
28 3 0.02
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (27 bp):
TGGGTAAAATTACCGAAATACCCTCGA
Found at i:11069386 original size:81 final size:81
Alignment explanation
Indices: 11069288--11069535 Score: 284
Period size: 81 Copynumber: 3.1 Consensus size: 81
11069278 GATTCGTGGG
* * * * *
11069288 AAAATTACTAAAATACCCTCGTTGGGTAAAATTACCGAAATACTCTCGATGGGTAAAATTACCAA
1 AAAATTACTGAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACAAA
*
11069353 AATATCCTC-GAAGGAT
66 AATA-CCTCTAAAGGAT
* * *
11069369 AAAATTA-TCGAAATACCCTCGATGGGTAAAATTACCAAAATACCCTCAAAGGGTCAAATTACAA
1 AAAATTACT-GAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACAA
*
11069433 AAATACCTCTAAAGGGT
65 AAATACCTCTAAAGGAT
** ** * **
11069450 AAAATTACTGAAATACCCTTAATGAATAAAATTACCGAAATACCCTTGAAGGGTAAAATTACTGA
1 AAAATTACTGAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACAAA
* * *
11069515 AATACCCCTGAAGGGT
66 AATACCTCTAAAGGAT
11069531 AAAAT
1 AAAAT
11069536 GACCGTTATA
Statistics
Matches: 142, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
80 5 0.04
81 136 0.96
82 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (81 bp):
AAAATTACTGAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACAAA
AATACCTCTAAAGGAT
Found at i:11069534 original size:54 final size:54
Alignment explanation
Indices: 11069288--11069540 Score: 260
Period size: 54 Copynumber: 4.7 Consensus size: 54
11069278 GATTCGTGGG
** * *
11069288 AAAATTACTAAAATACCCTCGTTGGGTAAAATTACCGAAATACTCTCGATGGGT
1 AAAATTACTAAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGT
* * * * *
11069342 AAAATTACCAAAATATCCTCGAAGGATAAAATTATCGAAATACCCTCGATGGGT
1 AAAATTACTAAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGT
* * * ** *
11069396 AAAATTACCAAAATACCCTCAAAGGGTCAAATTACAAAAATA-CCTCTAAAGGGT
1 AAAATTACTAAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTC-GAAGGGT
* * ** *
11069450 AAAATTACTGAAATACCCT-TAATGAATAAAATTACCGAAATACCCTTGAAGGGT
1 AAAATTACTAAAATACCCTCGAA-GGGTAAAATTACCGAAATACCCTCGAAGGGT
* *
11069504 AAAATTACTGAAATACCC-CTGAAGGGTAAAATGACCG
1 AAAATTACTAAAATACCCTC-GAAGGGTAAAATTACCG
11069541 TTATACCCCT
Statistics
Matches: 164, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
53 6 0.04
54 153 0.93
55 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.24
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGT
Found at i:11069792 original size:26 final size:26
Alignment explanation
Indices: 11069737--11069832 Score: 120
Period size: 26 Copynumber: 3.7 Consensus size: 26
11069727 CAAATACCAT
* * * * *
11069737 TACTGGTAGCTTTACTGTAATATTGA
1 TACTGGCAGCTTTGCTGCATTACTGA
* *
11069763 TACTTGCAGCTTTGCTGCATTACTGT
1 TACTGGCAGCTTTGCTGCATTACTGA
*
11069789 TACTGGCAGCTTTGCTGCGTTACTGA
1 TACTGGCAGCTTTGCTGCATTACTGA
11069815 TACTGGCAGCTTTGCTGC
1 TACTGGCAGCTTTGCTGC
11069833 GATATTGGTG
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 60 1.00
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.39
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCATTACTGA
Found at i:11069833 original size:26 final size:26
Alignment explanation
Indices: 11069760--11069833 Score: 121
Period size: 26 Copynumber: 2.8 Consensus size: 26
11069750 ACTGTAATAT
* *
11069760 TGATACTTGCAGCTTTGCTGCATTAC
1 TGATACTGGCAGCTTTGCTGCGTTAC
*
11069786 TGTTACTGGCAGCTTTGCTGCGTTAC
1 TGATACTGGCAGCTTTGCTGCGTTAC
11069812 TGATACTGGCAGCTTTGCTGCG
1 TGATACTGGCAGCTTTGCTGCG
11069834 ATATTGGTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATACTGGCAGCTTTGCTGCGTTAC
Found at i:11070009 original size:30 final size:29
Alignment explanation
Indices: 11069939--11070061 Score: 124
Period size: 30 Copynumber: 4.2 Consensus size: 29
11069929 CTGCATTTGT
* *
11069939 ACTGATTACTGTTTTGGGATAAGGCC-CAC
1 ACTGA-TACTGTATTGGGCTAAGGCCACAC
*
11069968 ACTGTTACTGTATTGGGCTAAGGCCTACAC
1 ACTGATACTGTATTGGGCTAAGGCC-ACAC
* *
11069998 TCTGATACTGTATTGGGCTATGGCCCACAC
1 ACTGATACTGTATTGGGCTAAGG-CCACAC
* * * *
11070028 ACTGCTACTGTATAGGGCTTAGGCC-CAG
1 ACTGATACTGTATTGGGCTAAGGCCACAC
11070056 ACTGAT
1 ACTGAT
11070062 TCTGCATGTT
Statistics
Matches: 78, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
28 25 0.32
29 6 0.08
30 45 0.58
31 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (29 bp):
ACTGATACTGTATTGGGCTAAGGCCACAC
Found at i:11070046 original size:60 final size:59
Alignment explanation
Indices: 11069940--11070052 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 59
11069930 TGCATTTGTA
* * *
11069940 CTGATTACTGTTTTGGGATAAGGCCCACACTGTTACTGTATTGGGCTAAGGCCTACACT
1 CTGATTACTGTATTGGGATAAGGCCCACACTGCTACTGTATAGGGCTAAGGCCTACACT
* * *
11069999 CTGA-TACTGTATTGGGCTATGGCCCACACACTGCTACTGTATAGGGCTTAGGCC
1 CTGATTACTGTATTGGGATAAGG-CC-CACACTGCTACTGTATAGGGCTAAGGCC
11070053 CAGACTGATT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
58 15 0.33
59 6 0.13
60 25 0.54
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (59 bp):
CTGATTACTGTATTGGGATAAGGCCCACACTGCTACTGTATAGGGCTAAGGCCTACACT
Found at i:11075157 original size:41 final size:39
Alignment explanation
Indices: 11075112--11075239 Score: 134
Period size: 40 Copynumber: 3.2 Consensus size: 39
11075102 AAACAGGCTT
* *
11075112 TTAGCGGCG-TTTGGATAAAAAACGGCACTAAAAATCAAGCA
1 TTAGCGGCGCTTT--AT-AAAAACGCCGCTAAAAATCAAGCA
** *
11075153 TTAGCGGCGCTTTTATAAAAACGCCGCTAAAGGTCGAGCA
1 TTAGCGGCGC-TTTATAAAAACGCCGCTAAAAATCAAGCA
* *
11075193 TTAGCGGCGCTTTTTGGAAAACGCCGCTAAAAAT-AAGCA
1 TTAGCGGCGCTTTAT-AAAAACGCCGCTAAAAATCAAGCA
11075232 TTAGCGGC
1 TTAGCGGC
11075240 ATTTTTTGAA
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
39 16 0.22
40 44 0.59
41 11 0.15
43 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (39 bp):
TTAGCGGCGCTTTATAAAAACGCCGCTAAAAATCAAGCA
Found at i:11075246 original size:39 final size:39
Alignment explanation
Indices: 11075130--11075263 Score: 137
Period size: 40 Copynumber: 3.4 Consensus size: 39
11075120 GTTTGGATAA
* * * * *
11075130 AAAACGGCACTAAAAATCAAGCATTAGCGGCGCTTTTATA
1 AAAACGCCGCTAAAAATCAAGCATTAGCGGC-ATTTTTTG
** * * *
11075170 AAAACGCCGCTAAAGGTCGAGCATTAGCGGCGCTTTTTGG
1 AAAACGCCGCTAAAAATCAAGCATTAGCGGC-ATTTTTTG
11075210 AAAACGCCGCTAAAAAT-AAGCATTAGCGGCATTTTTTG
1 AAAACGCCGCTAAAAATCAAGCATTAGCGGCATTTTTTG
11075248 AAAAGCGCCGC-AAAAA
1 AAAA-CGCCGCTAAAAA
11075264 GCCTAAGCCG
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
38 15 0.19
39 18 0.22
40 47 0.59
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (39 bp):
AAAACGCCGCTAAAAATCAAGCATTAGCGGCATTTTTTG
Found at i:11075365 original size:40 final size:41
Alignment explanation
Indices: 11075299--11075610 Score: 452
Period size: 41 Copynumber: 7.7 Consensus size: 41
11075289 TGAGTTTTTG
*
11075299 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCTGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
** * *
11075340 GGGCCTTTAGC-GAATTTTTGAAAAAGTGCAGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* * *
11075380 TGGCCTTTAGCGGCGTTTTTGAAGAAGCGCTGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
11075421 GGGCCTTTAGCGGCATTTTTGGAAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
11075462 GGGCCTTTAGCGGCGTTTTTTG-AAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCG-TTTTTGAAAAAGCGCCGCTAATGCTC
*
11075503 CGGCCTTTAGCGGCGTTTTTG-AAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* * *
11075543 CGGCCTTTAGCGGCGTTCTTG-AAAAGCGCCACTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
11075583 TGGCCTTTAGCGGCGTTTTTGAAAAAGC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGC
11075611 ACTACTAATA
Statistics
Matches: 247, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
40 117 0.47
41 124 0.50
42 6 0.02
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
Found at i:11075415 original size:41 final size:40
Alignment explanation
Indices: 11075299--11075607 Score: 449
Period size: 40 Copynumber: 7.6 Consensus size: 40
11075289 TGAGTTTTTG
*
11075299 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCTGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTG-AAAAGCGCCGCTAATGCTC
** * *
11075340 GGGCCTTTAGC-GAATTTTTGAAAAAGTGCAGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTG-AAAAGCGCCGCTAATGCTC
* *
11075380 TGGCCTTTAGCGGCGTTTTTGAAGAAGCGCTGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAA-AAGCGCCGCTAATGCTC
*
11075421 GGGCCTTTAGCGGCATTTTTGGAAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTC
11075462 GGGCCTTTAGCGGCGTTTTTTGAAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCG-TTTTTGAAAAGCGCCGCTAATGCTC
*
11075503 CGGCCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTC
* * *
11075543 CGGCCTTTAGCGGCGTTCTTGAAAAGCGCCACTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTC
*
11075583 TGGCCTTTAGCGGCGTTTTTGAAAA
1 GGGCCTTTAGCGGCGTTTTTGAAAA
11075608 AGCACTACTA
Statistics
Matches: 246, Mismatches: 18, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
40 123 0.50
41 115 0.47
42 8 0.03
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (40 bp):
GGGCCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTC
Found at i:11075609 original size:81 final size:81
Alignment explanation
Indices: 11075300--11075610 Score: 455
Period size: 81 Copynumber: 3.8 Consensus size: 81
11075290 GAGTTTTTGG
* *
11075300 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCTGCTAATGCTCGGGCCTTTAGC-GAATTTTTGAAAA
1 GGCCTTTAGCGGCGTTTTTG-AAAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCATTTTTGAAAA
* * *
11075364 AGTGCAGCTAATGCTCT
65 AGCGCCGCTAATGCTCC
* *
11075381 GGCCTTTAGCGGCGTTTTTGAAGAAGCGCTGCTAATGCTCGGGCCTTTAGCGGCATTTTTGGAAA
1 GGCCTTTAGCGGCGTTTTTGAA-AAGCGCCGCTAATGCTCGGGCCTTTAGCGGCATTTTTGAAAA
*
11075446 AGCGCCGCTAATGCTCG
65 AGCGCCGCTAATGCTCC
* *
11075463 GGCCTTTAGCGGCGTTTTTTGAAAAGCGCCGCTAATGCTCCGGCCTTTAGCGGCGTTTTTG-AAA
1 GGCCTTTAGCGGCG-TTTTTGAAAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCATTTTTGAAAA
11075527 AGCGCCGCTAATGCTCC
65 AGCGCCGCTAATGCTCC
* * * *
11075544 GGCCTTTAGCGGCGTTCTTGAAAAGCGCCACTAATGCTCTGGCCTTTAGCGGCGTTTTTGAAAAA
1 GGCCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCATTTTTGAAAAA
11075609 GC
66 GC
11075611 ACTACTAATA
Statistics
Matches: 214, Mismatches: 12, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
80 45 0.21
81 87 0.41
82 74 0.35
83 8 0.04
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (81 bp):
GGCCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCATTTTTGAAAAA
GCGCCGCTAATGCTCC
Found at i:11076296 original size:14 final size:15
Alignment explanation
Indices: 11076268--11076300 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
11076258 AAGGTTTATA
11076268 GATTATGGAATTAGG
1 GATTATGGAATTAGG
11076283 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
11076297 GATT
1 GATT
11076301 CTGATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:11076522 original size:33 final size:33
Alignment explanation
Indices: 11076466--11076536 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
11076456 ATTAAATAAT
* *
11076466 GTTTAGGGGTTAGGGATTAAGGGTTAGGTTAGG
1 GTTTAGGGATTAGAGATTAAGGGTTAGGTTAGG
* *
11076499 GTTTAGGGATTAGAGATTTAGGGTTGGGTTAGG
1 GTTTAGGGATTAGAGATTAAGGGTTAGGTTAGG
11076532 GTTTA
1 GTTTA
11076537 AGATTTAGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.21, C:0.00, G:0.42, T:0.37
Consensus pattern (33 bp):
GTTTAGGGATTAGAGATTAAGGGTTAGGTTAGG
Found at i:11076530 original size:26 final size:26
Alignment explanation
Indices: 11076472--11076544 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
11076462 TAATGTTTAG
**
11076472 GGGTTAGGGATTAAGGGTTA-GGTTA
1 GGGTTAGGGATTAAGATTTAGGGTTA
11076497 GGGTTTAGGGATTAGAGATTTAGGGTT-
1 GGG-TTAGGGATTA-AGATTTAGGGTTA
*
11076524 GGGTTAGGGTTTAAGATTTAG
1 GGGTTAGGGATTAAGATTTAG
11076545 ATTAATTAGT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
25 11 0.26
26 19 0.45
27 8 0.19
28 4 0.10
ACGTcount: A:0.23, C:0.00, G:0.41, T:0.36
Consensus pattern (26 bp):
GGGTTAGGGATTAAGATTTAGGGTTA
Found at i:11076545 original size:33 final size:33
Alignment explanation
Indices: 11076466--11076549 Score: 91
Period size: 33 Copynumber: 2.6 Consensus size: 33
11076456 ATTAAATAAT
* * *
11076466 GTTTAGGGGTTAGGGATTAAGGGTTAGGTTAGG
1 GTTTAGAGATTAGAGATTAAGGGTTAGGTTAGG
* * *
11076499 GTTTAGGGATTAGAGATTTAGGGTTGGGTTAGG
1 GTTTAGAGATTAGAGATTAAGGGTTAGGTTAGG
*
11076532 GTTTA-AGATT-TAGATTAA
1 GTTTAGAGATTAGAGATTAA
11076550 TTAGTGTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 6 0.14
32 4 0.09
33 34 0.77
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.37
Consensus pattern (33 bp):
GTTTAGAGATTAGAGATTAAGGGTTAGGTTAGG
Found at i:11076568 original size:115 final size:122
Alignment explanation
Indices: 11076410--11076707 Score: 362
Period size: 127 Copynumber: 2.5 Consensus size: 122
11076400 ATGGATTTAG
* * *
11076410 GGGTTAGGGGTT-AGGTTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAATGTTTAGGG
1 GGGTTAGGGTTTAAGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAGGTTTAGGG
* *
11076474 G-TTAG-GGATTAAGGG-TT-AGGTT-AG-G-GT-TTAGGGATTAGAGATTTAGGGTT
66 GATTAGTGG-TTAAGGGTTTGAGGTTAAGAGTGTATTAGGGATTAGAGATTCAGGGTC
* *
11076524 GGGTTAGGGTTTAAGATTTAGATTAATTAGTGTTTTTTATTTTATATATTAAATAAGGTTTAGGG
1 GGGTTAGGGTTTAAGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAGGTTTAGGG
* * * *
11076589 GTACTTAGTGGTTAGGGGTTTGGGGTTAAGAGTTAGTGATTAGGGTTTAGAGATTCGGGGTC
66 G-A-TTAGTGGTTAAGGGTTTGAGGTTAAGAG-T-GT-ATTAGGGATTAGAGATTCAGGGTC
* *
11076651 GGGTTAGGGTTTAAGGTTTAGATTAATTAGTATTTTTTAATTTATATACTAAATAAG
1 GGGTTAGGGTTTAAGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAG
11076708 TTCTTATATA
Statistics
Matches: 155, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
114 11 0.07
115 49 0.32
118 10 0.06
119 4 0.03
120 4 0.03
121 2 0.01
122 1 0.01
125 2 0.01
127 72 0.46
ACGTcount: A:0.27, C:0.01, G:0.30, T:0.42
Consensus pattern (122 bp):
GGGTTAGGGTTTAAGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAGGTTTAGGG
GATTAGTGGTTAAGGGTTTGAGGTTAAGAGTGTATTAGGGATTAGAGATTCAGGGTC
Found at i:11080200 original size:20 final size:20
Alignment explanation
Indices: 11080175--11080213 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
11080165 CTCTTAATAT
11080175 GTTAATCATAAATGGTGATC
1 GTTAATCATAAATGGTGATC
11080195 GTTAATCATAAATGGTGAT
1 GTTAATCATAAATGGTGAT
11080214 TGTAAATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.36
Consensus pattern (20 bp):
GTTAATCATAAATGGTGATC
Found at i:11081853 original size:43 final size:42
Alignment explanation
Indices: 11081806--11082055 Score: 283
Period size: 43 Copynumber: 5.9 Consensus size: 42
11081796 TTTGTAATAG
* *
11081806 AAGCGCCGCTAAAGGTCAT-AGTTTTTAGCGGTGTTTGTGTTAA
1 AAGCGCCGCTAAAGGTCATGA-TCTTTAGCGGCGTTTGTG-TAA
* * *
11081849 AAGCGCTGCTAAAGGTCATGATCTTTAGCGGCATTTTTGATAA
1 AAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTG-TAA
** * * *
11081892 AAGCGCCGCTAAAGACCACGATCTTTAGCGACGTTTGTAGTAG
1 AAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGT-GTAA
* *
11081935 AAGCGCCGCTAAAGGCCGTGATCTTTAGCGGCGTTTGTGTAA
1 AAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGTAA
11081977 AAGCGCCGCTAAAGGTCATGA-CTTTTAGCGGCGTTT-TAGGTAA
1 AAGCGCCGCTAAAGGTCATGATC-TTTAGCGGCGTTTGT--GTAA
*
11082020 AAGCGCCGCTAAA-GTCCATGATCTTTAGCGGTGTTT
1 AAGCGCCGCTAAAGGT-CATGATCTTTAGCGGCGTTT
11082056 TTTCACATAA
Statistics
Matches: 178, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
41 2 0.01
42 37 0.21
43 136 0.76
44 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (42 bp):
AAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGTAA
Found at i:11081900 original size:86 final size:86
Alignment explanation
Indices: 11081791--11082050 Score: 314
Period size: 86 Copynumber: 3.0 Consensus size: 86
11081781 TCATTTATAA
* * *
11081791 CGGCATTTGTAATAGAAGCGCCGCTAAAGGTCAT-AGTTTTTAGCGGTGTTTGT-GTTAAAAGCG
1 CGGCATTTGTGATAAAAGCGCCGCTAAAGGTCATGA-TTTTTAGCGGCGTTTGTAG-TAAAAGCG
*
11081854 CTGCTAAAGGTCATGATCTTTAG
64 CCGCTAAAGGTCATGATCTTTAG
* ** * * * *
11081877 CGGCATTTTTGATAAAAGCGCCGCTAAAGACCACGATCTTTAGCGACGTTTGTAGTAGAAGCGCC
1 CGGCATTTGTGATAAAAGCGCCGCTAAAGGTCATGATTTTTAGCGGCGTTTGTAGTAAAAGCGCC
* *
11081942 GCTAAAGGCCGTGATCTTTAG
66 GCTAAAGGTCATGATCTTTAG
* *
11081963 CGGCGTTTGTG-TAAAAGCGCCGCTAAAGGTCATGACTTTTAGCGGCGTTT-TAGGTAAAAGCGC
1 CGGCATTTGTGATAAAAGCGCCGCTAAAGGTCATGATTTTTAGCGGCGTTTGTA-GTAAAAGCGC
11082026 CGCTAAA-GTCCATGATCTTTAG
65 CGCTAAAGGT-CATGATCTTTAG
11082048 CGG
1 CGG
11082051 TGTTTTTTCA
Statistics
Matches: 146, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
84 3 0.02
85 63 0.43
86 78 0.53
87 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (86 bp):
CGGCATTTGTGATAAAAGCGCCGCTAAAGGTCATGATTTTTAGCGGCGTTTGTAGTAAAAGCGCC
GCTAAAGGTCATGATCTTTAG
Found at i:11082025 original size:128 final size:129
Alignment explanation
Indices: 11081796--11082049 Score: 370
Period size: 128 Copynumber: 2.0 Consensus size: 129
11081786 TATAACGGCA
* * * *
11081796 TTTGTAATAGAAGCGCCGCTAAAGGTCATAGTTTTTAGCGGTGTTTGTGTTAAAAGCGCTGCTAA
1 TTTGTAATAGAAGCGCCGCTAAAGGCCATAGTCTTTAGCGGCGTTTGTGTTAAAAGCGCCGCTAA
*
11081861 AGGTCATGATCTTTAGCGGCATTTTTGATAAAAGCGCCGCTAAAGACCACGATCTTTAGCGACG
66 AGGTCATGATCTTTAGCGGCATTTTAGATAAAAGCGCCGCTAAAGACCACGATCTTTAGCGACG
* *
11081925 TTTGTAGTAGAAGCGCCGCTAAAGGCCGT-GATCTTTAGCGGCGTTTGTG-TAAAAGCGCCGCTA
1 TTTGTAATAGAAGCGCCGCTAAAGGCCATAG-TCTTTAGCGGCGTTTGTGTTAAAAGCGCCGCTA
* * * *
11081988 AAGGTCATGA-CTTTTAGCGGCGTTTTAGGTAAAAGCGCCGCTAAAGTCCATGATCTTTAGCG
65 AAGGTCATGATC-TTTAGCGGCATTTTAGATAAAAGCGCCGCTAAAGACCACGATCTTTAGCG
11082050 GTGTTTTTTC
Statistics
Matches: 112, Mismatches: 11, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
127 1 0.01
128 69 0.62
129 42 0.38
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (129 bp):
TTTGTAATAGAAGCGCCGCTAAAGGCCATAGTCTTTAGCGGCGTTTGTGTTAAAAGCGCCGCTAA
AGGTCATGATCTTTAGCGGCATTTTAGATAAAAGCGCCGCTAAAGACCACGATCTTTAGCGACG
Found at i:11082866 original size:101 final size:101
Alignment explanation
Indices: 11082745--11082946 Score: 264
Period size: 101 Copynumber: 2.0 Consensus size: 101
11082735 ATAAAATGAT
* * * * * * *
11082745 GTTCAAATAAGTGGAGCAAAATATTCACTGTTGTAACAA-CCCTTACCTGATGCAAACAATAATT
1 GTTCAAATAAGGGGAACAAAATATGCACTATTGTAA-AACCCCTCACCCGATGCAAACAATAATC
* *
11082809 AATAATTCAATTAGGATCTCCTTACC-CTTACATTTGA
65 AAGAATTCAATTAGGATCTCCGTACCGC-TACATTTGA
* * *
11082846 GTTCAAATAAGGGGAACAAAATATGCACTATTGTAAAACCCCTCACCCGATGGAAAGAATAATCG
1 GTTCAAATAAGGGGAACAAAATATGCACTATTGTAAAACCCCTCACCCGATGCAAACAATAATCA
11082911 AGAATTCAATTAGGATCTCCGTACCGCTACATTTGA
66 AGAATTCAATTAGGATCTCCGTACCGCTACATTTGA
11082947 TAAGTTAATT
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
100 2 0.02
101 84 0.97
102 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (101 bp):
GTTCAAATAAGGGGAACAAAATATGCACTATTGTAAAACCCCTCACCCGATGCAAACAATAATCA
AGAATTCAATTAGGATCTCCGTACCGCTACATTTGA
Found at i:11086363 original size:60 final size:60
Alignment explanation
Indices: 11086291--11086409 Score: 220
Period size: 60 Copynumber: 2.0 Consensus size: 60
11086281 AATCAAGTTT
* *
11086291 TAAAATCAATTCCTCTGTGTTTTGAAATGTGTAAAAAGTCAGAATAGAGATTTGGTATTA
1 TAAAATCAATTCCTCTGTGTTTTGAAATGTGTAAAAAATCAGAATAGAGATTTGATATTA
11086351 TAAAATCAATTCCTCTGTGTTTTGAAATGTGTAAAAAATCAGAATAGAGATTTGATATT
1 TAAAATCAATTCCTCTGTGTTTTGAAATGTGTAAAAAATCAGAATAGAGATTTGATATT
11086410 GATACCTTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (60 bp):
TAAAATCAATTCCTCTGTGTTTTGAAATGTGTAAAAAATCAGAATAGAGATTTGATATTA
Found at i:11086628 original size:37 final size:37
Alignment explanation
Indices: 11086578--11086651 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
11086568 TATCCTAATG
11086578 TTAGTATCGATACCTACGGACCTAGTTTAAGAATTTT
1 TTAGTATCGATACCTACGGACCTAGTTTAAGAATTTT
11086615 TTAGTATCGATACCTACGGACCTAGTTTAAGAATTTT
1 TTAGTATCGATACCTACGGACCTAGTTTAAGAATTTT
11086652 GCTAAGTGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (37 bp):
TTAGTATCGATACCTACGGACCTAGTTTAAGAATTTT
Found at i:11086999 original size:72 final size:72
Alignment explanation
Indices: 11086863--11087006 Score: 182
Period size: 72 Copynumber: 2.0 Consensus size: 72
11086853 GTCCAGGTTG
* * * * * *
11086863 GGTATGGGGTGTTACAGTATCGATATTTCTTTCATTCTGTATCGATACTGAATGGAAAATAAAAC
1 GGTATAGGGTGTTACAGTATCGATATTTCTTTCATTCTGTATCGAAAATAAATCGAAAACAAAAC
*
11086928 ACCATTC
66 AACATTC
* * *
11086935 GGTATAGGGTGTTACAGTATCGATATTTCTTTCATT-TGGTATGGAAAATAAATCGATACCAAAA
1 GGTATAGGGTGTTACAGTATCGATATTTCTTTCATTCT-GTATCGAAAATAAATCGAAAACAAAA
11086999 CAACATTC
65 CAACATTC
11087007 TGTTTCTCTC
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
71 1 0.02
72 60 0.98
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.34
Consensus pattern (72 bp):
GGTATAGGGTGTTACAGTATCGATATTTCTTTCATTCTGTATCGAAAATAAATCGAAAACAAAAC
AACATTC
Found at i:11092955 original size:18 final size:18
Alignment explanation
Indices: 11092932--11092993 Score: 90
Period size: 18 Copynumber: 3.4 Consensus size: 18
11092922 TGGGTATTAC
11092932 AATGATATTGAAATGGAA
1 AATGATATTGAAATGGAA
* *
11092950 AATGATATTGAAATAGCA
1 AATGATATTGAAATGGAA
11092968 AATGATATTGAAA-GGACA
1 AATGATATTGAAATGGA-A
11092986 AATGATAT
1 AATGATAT
11092994 AGAATGTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
17 1 0.03
18 38 0.97
ACGTcount: A:0.50, C:0.03, G:0.19, T:0.27
Consensus pattern (18 bp):
AATGATATTGAAATGGAA
Found at i:11095780 original size:15 final size:15
Alignment explanation
Indices: 11095760--11095789 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
11095750 AGTTTAGGAG
11095760 GAAAGATGAAAAAAT
1 GAAAGATGAAAAAAT
11095775 GAAAGATGAAAAAAT
1 GAAAGATGAAAAAAT
11095790 TTTCTTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.20, T:0.13
Consensus pattern (15 bp):
GAAAGATGAAAAAAT
Found at i:11106289 original size:24 final size:24
Alignment explanation
Indices: 11106257--11106306 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
11106247 AAATTACATC
11106257 TCTTTTAACATTTTCACAACTTAG
1 TCTTTTAACATTTTCACAACTTAG
11106281 TCTTTTAACATTTTCACAACTTAG
1 TCTTTTAACATTTTCACAACTTAG
11106305 TC
1 TC
11106307 CTTAAGCCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.04, T:0.46
Consensus pattern (24 bp):
TCTTTTAACATTTTCACAACTTAG
Found at i:11110854 original size:44 final size:44
Alignment explanation
Indices: 11110788--11110873 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
11110778 TAGGTCAAAT
*
11110788 AATATTAAAATAACTTACACTAATAAGAGTTTAAGTGAGAAACA
1 AATATTAAAATAACTTACACTAAAAAGAGTTTAAGTGAGAAACA
* *
11110832 AATATTAAAATAACTTATACTAAAAAGAGTTTAAGTGGGAAA
1 AATATTAAAATAACTTACACTAAAAAGAGTTTAAGTGAGAAA
11110874 GTTAAACCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.52, C:0.07, G:0.13, T:0.28
Consensus pattern (44 bp):
AATATTAAAATAACTTACACTAAAAAGAGTTTAAGTGAGAAACA
Found at i:11111124 original size:13 final size:13
Alignment explanation
Indices: 11111106--11111134 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
11111096 TTGATTTCCA
11111106 CTAACACAGTGCC
1 CTAACACAGTGCC
11111119 CTAACACAGTGCC
1 CTAACACAGTGCC
11111132 CTA
1 CTA
11111135 CGCTGAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.38, G:0.14, T:0.17
Consensus pattern (13 bp):
CTAACACAGTGCC
Found at i:11112586 original size:52 final size:55
Alignment explanation
Indices: 11112508--11112612 Score: 171
Period size: 52 Copynumber: 2.0 Consensus size: 55
11112498 CAAAAAAAAG
*
11112508 TTTTTGAGGTTTGGTGGAAGTAAAAGTTTTGGGGA-AAAGT-AAAAAGAAAAATA
1 TTTTTGAGGTTTGGTAGAAGTAAAAGTTTTGGGGAGAAAGTAAAAAAGAAAAATA
*
11112561 TTTTTGGGGTTTGG-AGAAGTAAAAGTTTTGGGGAGAAAGTAAAAAAGAAAAA
1 TTTTTGAGGTTTGGTAGAAGTAAAAGTTTTGGGGAGAAAGTAAAAAAGAAAAA
11112613 AATTGGGGGT
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
52 19 0.40
53 18 0.38
54 11 0.23
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.29
Consensus pattern (55 bp):
TTTTTGAGGTTTGGTAGAAGTAAAAGTTTTGGGGAGAAAGTAAAAAAGAAAAATA
Found at i:11112622 original size:52 final size:52
Alignment explanation
Indices: 11112515--11112643 Score: 163
Period size: 52 Copynumber: 2.4 Consensus size: 52
11112505 AAGTTTTTGA
* *
11112515 GGTTTGGTGGAAGTAAAAGTTTTGGGGAAAAGTAAAAAGAAAAATATTTTTGG
1 GGTTTGG-GGAAGTAAAAGTTTTGGGGAAAAGTAAAAAGAAAAATATATTGGG
*
11112568 GGTTTGGAGAAGTAAAAGTTTTGGGGAGAAAGTAAAAAAGAAAAA-A-ATTGGG
1 GGTTTGGGGAAGTAAAAGTTTTGGGGA-AAAGT-AAAAAGAAAAATATATTGGG
*
11112620 GGTTTAGGGGGAAGTAAAATTTTT
1 GGTTT--GGGGAAGTAAAAGTTTT
11112644 TAGGGGCNNN
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
52 28 0.42
53 13 0.19
54 26 0.39
ACGTcount: A:0.40, C:0.00, G:0.32, T:0.28
Consensus pattern (52 bp):
GGTTTGGGGAAGTAAAAGTTTTGGGGAAAAGTAAAAAGAAAAATATATTGGG
Found at i:11113169 original size:9 final size:9
Alignment explanation
Indices: 11113152--11113182 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
11113142 TCGAGTTGAT
11113152 TCGAATAAC
1 TCGAATAAC
*
11113161 TCGATTAAC
1 TCGAATAAC
11113170 TCGAATAAC
1 TCGAATAAC
11113179 TCGA
1 TCGA
11113183 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:11122061 original size:30 final size:30
Alignment explanation
Indices: 11121984--11122064 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
11121974 CCCATCCTCT
* *
11121984 TGAACACA-ATATCGAGTCTTTCCAAGCTCC
1 TGAACA-AGATATCGAGTCTTCCCAAGATCC
* ** * *
11122014 TTAATGAGAGATTGAGTCTTCCCAAGATCC
1 TGAACAAGATATCGAGTCTTCCCAAGATCC
11122044 TGAACAAGATATCGAGTCTTC
1 TGAACAAGATATCGAGTCTTC
11122065 TCATGTTCCT
Statistics
Matches: 38, Mismatches: 12, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
29 1 0.03
30 37 0.97
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.28
Consensus pattern (30 bp):
TGAACAAGATATCGAGTCTTCCCAAGATCC
Found at i:11132034 original size:20 final size:20
Alignment explanation
Indices: 11132003--11132054 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
11131993 GAAAATCATT
*
11132003 TTAAAATGATTTTAACTAGA
1 TTAAAATCATTTTAACTAGA
* * * *
11132023 TTGAAATCATTTTGACTTGG
1 TTAAAATCATTTTAACTAGA
11132043 TTAAAATCATTT
1 TTAAAATCATTT
11132055 GCACTTGATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.44
Consensus pattern (20 bp):
TTAAAATCATTTTAACTAGA
Found at i:11134984 original size:88 final size:89
Alignment explanation
Indices: 11134825--11135002 Score: 349
Period size: 88 Copynumber: 2.0 Consensus size: 89
11134815 GTGATTCCTT
11134825 AGGATAAGATTGATATCTAGCACACAATCCTATACTACACATAATGTCGAGTCTACTTGCGGTAA
1 AGGATAAGATTGATATCTAGCACACAATCCTATACTACACATAATGTCGAGTCTACTTGCGGTAA
11134890 GATAAAGCAAAGAACCAATCATTG
66 GATAAAGCAAAGAACCAATCATTG
11134914 AGGATAAGA-TGATATCTAGCACACAATCCTATACTACACATAATGTCGAGTCTACTTGCGGTAA
1 AGGATAAGATTGATATCTAGCACACAATCCTATACTACACATAATGTCGAGTCTACTTGCGGTAA
11134978 GATAAAGCAAAGAACCAATCATTG
66 GATAAAGCAAAGAACCAATCATTG
11135002 A
1 A
11135003 CCTATATAAT
Statistics
Matches: 89, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
88 80 0.90
89 9 0.10
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (89 bp):
AGGATAAGATTGATATCTAGCACACAATCCTATACTACACATAATGTCGAGTCTACTTGCGGTAA
GATAAAGCAAAGAACCAATCATTG
Found at i:11140131 original size:20 final size:20
Alignment explanation
Indices: 11140100--11140161 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
11140090 GAAAATCATT
*
11140100 TTAAAATGATTTTAACTTGA
1 TTAAAATCATTTTAACTTGA
* * *
11140120 TTGAAATCATTTTGACTTGG
1 TTAAAATCATTTTAACTTGA
**
11140140 TTAAAATCATTTGCACTTGA
1 TTAAAATCATTTTAACTTGA
11140160 TT
1 TT
11140162 TTAAAATTGT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.45
Consensus pattern (20 bp):
TTAAAATCATTTTAACTTGA
Found at i:11148105 original size:27 final size:27
Alignment explanation
Indices: 11148075--11148206 Score: 149
Period size: 27 Copynumber: 4.9 Consensus size: 27
11148065 TTTCATCTCC
** *
11148075 TAAGGGTATAACAGTTATTTTACCCTA
1 TAAGGGTATTTCAGTCATTTTACCCTA
11148102 TAAGGGTATTTC-GATCATTTTACCCTA
1 TAAGGGTATTTCAG-TCATTTTACCCTA
** *
11148129 TGGGGGTATTTCGGTCATTTTACCCTA
1 TAAGGGTATTTCAGTCATTTTACCCTA
* * *
11148156 TGAGGGTATTTTAGTCATTTTATCCTA
1 TAAGGGTATTTCAGTCATTTTACCCTA
* *
11148183 TAGGGGTATTTCGGTCATTTTACC
1 TAAGGGTATTTCAGTCATTTTACC
11148207 TATTTTGGGG
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.01
27 87 0.98
28 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.42
Consensus pattern (27 bp):
TAAGGGTATTTCAGTCATTTTACCCTA
Found at i:11152427 original size:19 final size:19
Alignment explanation
Indices: 11152405--11152453 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
11152395 TACAACATAA
11152405 TCCACATTTTATTTTCCAT
1 TCCACATTTTATTTTCCAT
11152424 TCCAC-TTTTCA-TTTCCAT
1 TCCACATTTT-ATTTTCCAT
* *
11152442 TTCACATATTAT
1 TCCACATTTTAT
11152454 GTCATTTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 16 0.64
19 9 0.36
ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51
Consensus pattern (19 bp):
TCCACATTTTATTTTCCAT
Found at i:11157768 original size:307 final size:296
Alignment explanation
Indices: 11157198--11157776 Score: 858
Period size: 307 Copynumber: 1.9 Consensus size: 296
11157188 CTGAGTACCC
* *
11157198 CATCATTTACTAATATCTTAATCCTTTTAATGGACATGTGTCCTAATCTCATATGCCATAAAATA
1 CATCATTTACTAATATCTTAATCCTTTCAATGGACATATGTCCTAATCTCATATGCCATAAAATA
*
11157263 AAGGAATCTTCATTTATAACACAACGTTTAGTACCAGTTTGAACGTGCATAACATTATGAGTGGT
66 AAGGAATCTTCATTTATAACACAACGTTTAGTACCAGTTTGAACGTGCATAACATTATGAGTGAT
*
11157328 ATTATTTTTCAAATTAAGAGAATAAAGACCATCAGAACCAACAAGTTCAAATTTATAAAATAAAC
131 ATTATTTTTCAAATTAAGAGAATAAAGACCATCAGAACCAACAAGTTCAAATTTACAAAATAAAC
* * * *
11157393 TGAAACTAGTGTTTGAGAAACTAAATCAATACCGAAATGGTGCAAGTCTTGAAATAGAAACTAAA
196 TCAAACCAGTGTTTGAAAAACTAAAACAATACCGAAATGGTGCAAGTCTTGAAATAGAAACTAAA
*
11157458 TTTCTAGAAAAACTAAGAATATAAAAAAAATATTTT
261 TTTCTAAAAAAACTAAGAATATAAAAAAAATATTTT
* * * *
11157494 CATCATTTACTAATCTCTTAATCCTTTCAATGGAGATATTTCCTAATCTCCA-ATGCCATGAAAT
1 CATCATTTACTAATATCTTAATCCTTTCAATGGACATATGTCCTAATCT-CATATGCCATAAAAT
* * *
11157558 AGAGGAATCTTCATTTATAACACAATGTTTAGTA-TAGTTTGAACGTGCATAACATTATGAGTGA
65 AAAGGAATCTTCATTTATAACACAACGTTTAGTACCAGTTTGAACGTGCATAACATTATGAGTGA
*
11157622 TATTATTTTTCAAATTAAGAGAATAAAGACCATCAGAAAAAACACCATTTCCAACAAGTTCAGAT
130 TATTATTTTTCAAATTAAGAGAATAAAGACCATCAG-------A--A---CCAACAAGTTCAAAT
11157687 TTACAAAATAAACTCAAACCAGTGTTTGAAAAACTAAAACAATATCC-AAATGGTGCAAGTCTTG
183 TTACAAAATAAACTCAAACCAGTGTTTGAAAAACTAAAACAATA-CCGAAATGGTGCAAGTCTTG
11157751 AAATAGAAACTAAATTTCTAAAAAAA
247 AAATAGAAACTAAATTTCTAAAAAAA
11157777 GGGAATATAA
Statistics
Matches: 252, Mismatches: 17, Indels: 17
0.88 0.06 0.06
Matches are distributed among these distances:
295 64 0.25
296 87 0.35
297 2 0.01
302 1 0.00
304 1 0.00
307 95 0.38
308 2 0.01
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (296 bp):
CATCATTTACTAATATCTTAATCCTTTCAATGGACATATGTCCTAATCTCATATGCCATAAAATA
AAGGAATCTTCATTTATAACACAACGTTTAGTACCAGTTTGAACGTGCATAACATTATGAGTGAT
ATTATTTTTCAAATTAAGAGAATAAAGACCATCAGAACCAACAAGTTCAAATTTACAAAATAAAC
TCAAACCAGTGTTTGAAAAACTAAAACAATACCGAAATGGTGCAAGTCTTGAAATAGAAACTAAA
TTTCTAAAAAAACTAAGAATATAAAAAAAATATTTT
Found at i:11160253 original size:17 final size:17
Alignment explanation
Indices: 11160231--11160263 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
11160221 ATATGTTTTA
11160231 TTTTTAATCAAATATAC
1 TTTTTAATCAAATATAC
11160248 TTTTTAATCAAATATA
1 TTTTTAATCAAATATA
11160264 TATTAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:11161636 original size:17 final size:17
Alignment explanation
Indices: 11161614--11161646 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
11161604 TTTTAGTATG
11161614 TATTT-ATAATTATTTAT
1 TATTTAATAA-TATTTAT
11161631 TATTTAATAATATTTA
1 TATTTAATAATATTTA
11161647 AACAAACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TATTTAATAATATTTAT
Found at i:11162025 original size:14 final size:14
Alignment explanation
Indices: 11161991--11162026 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
11161981 ACAGGCTTTT
*
11161991 TTTTCTCTATTTAA
1 TTTTCTTTATTTAA
11162005 TTTTCTTTATTTAA
1 TTTTCTTTATTTAA
11162019 TTTTCTTT
1 TTTTCTTT
11162027 TGCAATTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTCTTTATTTAA
Found at i:11165448 original size:62 final size:62
Alignment explanation
Indices: 11165351--11165480 Score: 251
Period size: 62 Copynumber: 2.1 Consensus size: 62
11165341 GTGTGGAAGA
11165351 CTAGGACATGGGGAGAATTTGTGTCCCTTACGCCTTTCCCTAGGGGTGCAAGATGAGTATGG
1 CTAGGACATGGGGAGAATTTGTGTCCCTTACGCCTTTCCCTAGGGGTGCAAGATGAGTATGG
11165413 CTAGGACATGGGGAGAATTTGTGTCCCTTACGCCTTTCCCTAGGGGTGCAAGATGAGTATGG
1 CTAGGACATGGGGAGAATTTGTGTCCCTTACGCCTTTCCCTAGGGGTGCAAGATGAGTATGG
*
11165475 TTAGGA
1 CTAGGA
11165481 TATTTCTCTA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (62 bp):
CTAGGACATGGGGAGAATTTGTGTCCCTTACGCCTTTCCCTAGGGGTGCAAGATGAGTATGG
Found at i:11170903 original size:12 final size:11
Alignment explanation
Indices: 11170875--11170908 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
11170865 ATATATATAT
11170875 TAAAATT-ATA
1 TAAAATTAATA
11170885 TAAAATTAATA
1 TAAAATTAATA
11170896 TAAAAATTAATA
1 T-AAAATTAATA
11170908 T
1 T
11170909 GGGCGGGTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 7 0.32
11 4 0.18
12 11 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TAAAATTAATA
Found at i:11179879 original size:19 final size:19
Alignment explanation
Indices: 11179855--11179892 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
11179845 ATATTAGATG
11179855 ATATATAACAATTAGTTAT
1 ATATATAACAATTAGTTAT
11179874 ATATATAACAATTAGTTAT
1 ATATATAACAATTAGTTAT
11179893 TCTTATTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (19 bp):
ATATATAACAATTAGTTAT
Found at i:11182883 original size:28 final size:28
Alignment explanation
Indices: 11182850--11182906 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
11182840 TGTAGACCAA
11182850 GTGTTTGTTAAAATGATGACAAAGATTC
1 GTGTTTGTTAAAATGATGACAAAGATTC
11182878 GTGTTTGTTAAAATGATGACAAAGATTC
1 GTGTTTGTTAAAATGATGACAAAGATTC
11182906 G
1 G
11182907 ATTTTCCCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.35
Consensus pattern (28 bp):
GTGTTTGTTAAAATGATGACAAAGATTC
Found at i:11186422 original size:110 final size:110
Alignment explanation
Indices: 11186226--11186423 Score: 351
Period size: 110 Copynumber: 1.8 Consensus size: 110
11186216 TTCTAATTGA
*
11186226 GGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCTTAAGGTGCTGGGTGTCGATTTTTCTC
1 GGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTC
* * *
11186291 GTTCAACCAAATGGCTTAATATCTTTTTTAAAAATTTCAAAATAT
66 GTTCAACAAAATAGCTAAATATCTTTTTTAAAAATTTCAAAATAT
*
11186336 GGCAATGTTTTGTGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTC
1 GGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTC
11186401 GTTCAACAAAATAGCTAAATATC
66 GTTCAACAAAATAGCTAAATATC
11186424 CTTNNNNNNN
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
110 83 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (110 bp):
GGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTC
GTTCAACAAAATAGCTAAATATCTTTTTTAAAAATTTCAAAATAT
Found at i:11189905 original size:8 final size:8
Alignment explanation
Indices: 11189892--11189959 Score: 86
Period size: 8 Copynumber: 8.4 Consensus size: 8
11189882 CAGACTCAAA
11189892 AAAAAATC
1 AAAAAATC
11189900 AAAAAA-C
1 AAAAAATC
11189907 AAAAAATC
1 AAAAAATC
11189915 AAAAAAAATC
1 --AAAAAATC
*
11189925 AAAAAAATT
1 -AAAAAATC
11189934 AAAAAATC
1 AAAAAATC
11189942 AAAAAATC
1 AAAAAATC
11189950 -AAAAATC
1 AAAAAATC
11189957 AAA
1 AAA
11189960 GTCAAAAATA
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
7 14 0.26
8 24 0.44
9 8 0.15
10 8 0.15
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAATC
Found at i:11189912 original size:17 final size:18
Alignment explanation
Indices: 11189892--11189954 Score: 73
Period size: 17 Copynumber: 3.7 Consensus size: 18
11189882 CAGACTCAAA
11189892 AAAAAATC--AAAAAA-C
1 AAAAAATCAAAAAAAATC
11189907 AAAAAATCAAAAAAAATC
1 AAAAAATCAAAAAAAATC
*
11189925 AAAAAA--ATTAAAAAATC
1 AAAAAATCA-AAAAAAATC
11189942 AAAAAATCAAAAA
1 AAAAAATCAAAAA
11189955 TCAAAGTCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
15 8 0.20
16 1 0.03
17 20 0.50
18 10 0.25
19 1 0.03
ACGTcount: A:0.79, C:0.10, G:0.00, T:0.11
Consensus pattern (18 bp):
AAAAAATCAAAAAAAATC
Found at i:11189924 original size:25 final size:25
Alignment explanation
Indices: 11189890--11189959 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 25
11189880 TTCAGACTCA
11189890 AAAAAAAATCAAAAAACAAAAAATC
1 AAAAAAAATCAAAAAACAAAAAATC
*
11189915 AAAAAAAATCAAAAAAATTAAAAAATC
1 AAAAAAAATC-AAAAAA-CAAAAAATC
*
11189942 --AAAAAATCAAAAATCAAA
1 AAAAAAAATCAAAAAACAAA
11189960 GTCAAAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 3 0.08
24 5 0.12
25 18 0.45
26 6 0.15
27 8 0.20
ACGTcount: A:0.79, C:0.10, G:0.00, T:0.11
Consensus pattern (25 bp):
AAAAAAAATCAAAAAACAAAAAATC
Found at i:11190518 original size:112 final size:113
Alignment explanation
Indices: 11190310--11190535 Score: 427
Period size: 112 Copynumber: 2.0 Consensus size: 113
11190300 CTAGAGTTGA
11190310 ACATCGAAAATTAAAGGAAAATGACTGAGACTTACAAGGATCGGCATGAGAAATTACTATTCGAA
1 ACATCGAAAATTAAAGGAAAATGACTGAGACTTACAAGGATCGGCATGAGAAATTACTATTCGAA
11190375 CATCTATACTGGGGCAATACCTTTCTCTTTGGTTTGCGGGGTTTAGGT
66 CATCTATACTGGGGCAATACCTTTCTCTTTGGTTTGCGGGGTTTAGGT
11190423 ACATCGAAAA-TAAAGGAAAATGACTGAGACTTACAAGGATCGGCATGAGAAATTACTATTCGAA
1 ACATCGAAAATTAAAGGAAAATGACTGAGACTTACAAGGATCGGCATGAGAAATTACTATTCGAA
* *
11190487 CATCTATACTGGGGCAATACCTTTCTTTTTGGTTTGGGGGGTTTAGGT
66 CATCTATACTGGGGCAATACCTTTCTCTTTGGTTTGCGGGGTTTAGGT
11190535 A
1 A
11190536 GTTTTACCTA
Statistics
Matches: 111, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
112 101 0.91
113 10 0.09
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.29
Consensus pattern (113 bp):
ACATCGAAAATTAAAGGAAAATGACTGAGACTTACAAGGATCGGCATGAGAAATTACTATTCGAA
CATCTATACTGGGGCAATACCTTTCTCTTTGGTTTGCGGGGTTTAGGT
Found at i:11192547 original size:13 final size:13
Alignment explanation
Indices: 11192538--11192567 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
11192528 AAAAAAATAA
11192538 AAAATGAAAAATG
1 AAAATGAAAAATG
*
11192551 AGAATGAAAAATG
1 AAAATGAAAAATG
11192564 AAAA
1 AAAA
11192568 ATGGAGAGGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.17, T:0.13
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:11192550 original size:7 final size:7
Alignment explanation
Indices: 11192530--11192570 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
11192520 AAAAAAATAA
*
11192530 AAAAATA
1 AAAAATG
11192537 AAAAATG
1 AAAAATG
11192544 AAAAATG
1 AAAAATG
*
11192551 -AGAATG
1 AAAAATG
11192557 AAAAATG
1 AAAAATG
11192564 AAAAATG
1 AAAAATG
11192571 GAGAGGCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
6 5 0.17
7 25 0.83
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:11194066 original size:25 final size:25
Alignment explanation
Indices: 11194020--11194069 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
11194010 CAGTTAAAAA
* * *
11194020 GATTAAAGCCACATCGGTGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
*
11194045 GATTAAAGCTACAACAGCGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
11194070 ACGCCCCAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (25 bp):
GATTAAAGCCACAACAGCGAATCTT
Found at i:11194191 original size:25 final size:25
Alignment explanation
Indices: 11194145--11194194 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
11194135 CAGTTAAAAA
* * *
11194145 GATTAAAGCCACATCGGTGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
*
11194170 GATTAAAGCTACAACAGCGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
11194195 ACGCCCCAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (25 bp):
GATTAAAGCCACAACAGCGAATCTT
Found at i:11194316 original size:25 final size:25
Alignment explanation
Indices: 11194270--11194319 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
11194260 CAGTTAAAAA
* * *
11194270 GATTAAAGCCACATCGGTGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
*
11194295 GATTAAAGCTACAACAGCGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
11194320 ACGCCCCAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (25 bp):
GATTAAAGCCACAACAGCGAATCTT
Found at i:11194441 original size:25 final size:25
Alignment explanation
Indices: 11194395--11194444 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
11194385 CAGTTAAAAA
* * *
11194395 GATTAAAGCCACATCGGTGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
*
11194420 GATTAAAGCTACAACAGCGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
11194445 ACGCCCCAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (25 bp):
GATTAAAGCCACAACAGCGAATCTT
Found at i:11194566 original size:25 final size:25
Alignment explanation
Indices: 11194520--11194569 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
11194510 CAGTTAAAAA
* * *
11194520 GATTAAAGCCACATCGGTGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
*
11194545 GATTAAAGCTACAACAGCGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
11194570 ACGCCCCAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (25 bp):
GATTAAAGCCACAACAGCGAATCTT
Found at i:11194691 original size:25 final size:25
Alignment explanation
Indices: 11194645--11194694 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
11194635 CAGTTAAAAA
* * *
11194645 GATTAAAGCCACATCGGTGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
*
11194670 GATTAAAGCTACAACAGCGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
11194695 ACGCCCCAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (25 bp):
GATTAAAGCCACAACAGCGAATCTT
Found at i:11194794 original size:125 final size:125
Alignment explanation
Indices: 11193920--11194782 Score: 1674
Period size: 125 Copynumber: 6.9 Consensus size: 125
11193910 CGGTTAAAAA
* * *
11193920 GATTAAAGCTACATCAGCAAATCTTAC-CTCTCAAGCGATGCAGTGGAATAGATTAAAGCCAAAT
1 GATTAAAGCTACAACAGCGAATCTTACGC-CCCAAGCGATGCAGTGGAATAGATTAAAGCCAAAT
11193984 TGGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
65 TGGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
11194045 GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
1 GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
11194110 GGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
66 GGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
11194170 GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
1 GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
11194235 GGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
66 GGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
11194295 GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
1 GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
11194360 GGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
66 GGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
11194420 GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
1 GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
11194485 GGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
66 GGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
11194545 GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
1 GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
11194610 GGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
66 GGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
11194670 GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
1 GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
*
11194735 GGTGAATCTTGTTTCTCTGACATTGCAGTTAAAAAGATTAAAGCCACA
66 GGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACA
11194783 ATGGCGAATC
Statistics
Matches: 733, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
125 732 1.00
126 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (125 bp):
GATTAAAGCTACAACAGCGAATCTTACGCCCCAAGCGATGCAGTGGAATAGATTAAAGCCAAATT
GGTGAATCTTGTTTCTCCGACATTGCAGTTAAAAAGATTAAAGCCACATCGGTGAATCTT
Found at i:11195311 original size:175 final size:174
Alignment explanation
Indices: 11195017--11196371 Score: 969
Period size: 173 Copynumber: 7.9 Consensus size: 174
11195007 TTGAAGCCAT
* * *
11195017 GATCTTATCTCCCTAAGATTACAGCGGAGCAGATCGAAGACACT-ATCCTATCTCCCTGAAGTTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-CAGTAATCCTATCTCCCTGAAGTTA
* * *
11195081 CAGTGCAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAG
65 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
11195146 GTCTTATCTCCCTGAGATTACAGTGGAGTAGACTGAAGAATTTCA
130 GTCTTATCTCCCTGAGATTACAGTGGAGTAGACTGAAGAATTTCA
* *
11195191 GATTTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGTC-GATAATCCTATCTCCCTGAAGTT
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-CAG-TAATCCTATCTCCCTGAAGTT
*
11195255 ACAGTGGAGCGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
64 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
* * * *
11195320 GGTCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGAATTTCG
129 GGTCTTATCTCCCTGAGATTACAGTGGAGTAGACTGAAGAATTTCA
** * * *
11195366 GATCTTATCTCCCTGATG-TTACAGTAGAGTAGATTGAAGTCAG--ATCTTATCTCCTTG-AGAT
1 GATCTTATCTCCCTGA-GATTACAGCGGAGCAGATTGAAG-CAGTAATCCTATCTCCCTGAAG-T
* * ** ** * * * * ***
11195427 TACAGCGAAGTAGATTGAAGCT--AGTAATCCTATCTCTCTGAAGTTACAGTGGAGTGGATTAAA
63 TACAGTGGAGCGGATT-AAAATAAAG-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-TCGC
* * * * *
11195490 ATAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-T--CG--TATCA
125 AT-CAGG-TCTTATCTCCCTGAGA-TTACAGTGGAGTAGACTGAAGAATTTCA
*
11195537 GATCTTATCTCTCC-GAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTT
1 GATCTTATCTC-CCTGAGATTACAGCGGAGCAGATTGAAGC-AGTAATCCTATCTCCCTGAAGTT
* *
11195601 ACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCA
64 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
* * **
11195666 GGTCTTATCTCCCTAAGATTACAGTGGAGCAGACCAAAGAATTTCA
129 GGTCTTATCTCCCTGAGATTACAGTGGAGTAGACTGAAGAATTTCA
* *
11195712 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGTAATCCTATCT--C-----TTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC-AGTAATCCTATCTCCCTGAAGTTA
* * *
11195770 CAGT-GA-CGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGTATTAG
65 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * * * *
11195833 GTCTTATATCCCTGAGATTACAGTAGAGTAGATTGAAG-CTAGT-A
130 GTCTTATCTCCCTGAGATTACAGTGGAGTAGACTGAAGAAT-TTCA
* * * * ** * * *
11195877 -ATCTTATCTCCCTGAGATTACAGTGGAACGGATTAAAATAAAG-GATCTTATCTCTCTGAAGTT
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATT-GAA-GCAGTAATCCTATCTCCCTGAAGTT
* * **** * * * * ** *** *
11195940 ACAGTAGAGTAGG--TCGTGT-CA-GATTTTATCTCCCTG-AGATTACAGCAGAACAGATTAAAG
64 ACAGTGGAG-CGGATTAAAATAAAGGATCTTATCTCTCTGAAG-TTACAGTAGAGTAGATCGCAT
* * * ** * **
11196000 CTAGTAATCCTACCTCCCTGAGATTACAGTGGAGCGGA-TTAA-AA-TAAA
127 C-AG--GTCTTATCTCCCTGAGATTACAGTGGAGTAGACTGAAGAATTTCA
* ** * * * *
11196048 GGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG-TGTCAG--ATCTTATCTCCCTG-AGA
1 -GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAG-CAGTAATCCTATCTCCCTGAAG-
* * * * * * * *
11196108 TTACAGCGGAGCAGATTAAAGCT--AGTAATCCTACCTC-CTTG-AGATTACAGTGGAGCAGATT
62 TTACAGTGGAGCGGATTAAA-ATAAAG-GATCTTATCTCTC-TGAAG-TTACAGTAGAGTAGA-T
*** * * * * *
11196169 AAAATAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-T--CG--TGTCA
122 CGCAT-CAGG-TCTTATCTCCCTGAGA-TTACAGTGGAGTAGACTGAAGAATTTCA
* * *
11196219 GATCTTATCTCCCTGAGATTACAGCGGAGCATATTAAAGCTAGTAATCCTACCTCCCTG-AGATT
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC-AGTAATCCTATCTCCCTGAAG-TT
* **
11196283 ACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCA
64 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
*
11196348 GATCTTATCTCCCTGAGATTACAG
129 GGTCTTATCTCCCTGAGATTACAG
11196372 CGGAACAGAT
Statistics
Matches: 924, Mismatches: 185, Indels: 148
0.74 0.15 0.12
Matches are distributed among these distances:
164 39 0.04
165 6 0.01
166 85 0.09
167 2 0.00
168 7 0.01
169 4 0.00
170 123 0.13
171 63 0.07
172 26 0.03
173 265 0.29
174 62 0.07
175 214 0.23
176 28 0.03
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (174 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGTAATCCTATCTCCCTGAAGTTAC
AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAGTAGACTGAAGAATTTCA
Found at i:11195372 original size:46 final size:42
Alignment explanation
Indices: 11195104--11195744 Score: 138
Period size: 44 Copynumber: 14.8 Consensus size: 42
11195094 TAAAATAAAT
* ** * *
11195104 GATCTTATCT-CTCTGAAGTTACAGCAGAGTAGATCGCA-TCA
1 GATCTTATCTCCT-TGAGGTTACAGTGGAGTAGACCGAAGTCA
* * * *
11195145 GGTCTTATCTCCCTGAGATTACAGTGGAGTAGACTGAAGAATTTCA
1 GATCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAG----TCA
* * * ** * **
11195191 GATTTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGTCGA
1 GATCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGTC-A
* * * * ** *** * *
11195234 TAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAA
1 -GATCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGT-CA
* * * * *
11195278 GGATCTCATCT-CTCTGAAGTTACAGTAGAGTAGATCGCA-TCA
1 -GATCTTATCTCCT-TGAGGTTACAGTGGAGTAGACCGAAGTCA
* *
11195320 GGTCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGAATTTCG
1 GATCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAG----TCA
* * * **
11195366 GATCTTATCTCCCTGATGTTACAGTAGAGTAGATTGAAGTCA
1 GATCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGTCA
* * * **
11195408 GATCTTATCTCCTTGAGATTACAGCGAAGTAGATTGAAG-CTA
1 GATCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGTC-A
* * * *** * *
11195450 GTAATCCTATCT-CTCTGAAGTTACAGTGGAGTGGATTAAAATAAA
1 G--ATCTTATCTCCT-TGAGGTTACAGTGGAGTAGACCGAAGT-CA
* * * *
11195495 GGATCTTATCT-CTCTGAAGTTACAGTAGAGTAGATCGTA-TCA
1 -GATCTTATCTCCT-TGAGGTTACAGTGGAGTAGACCGAAGTCA
* * * * **
11195537 GATCTTATCT-CTCCGAGATTACAGCGGAGCAGATTGAAG-CTA
1 GATCTTATCTCCT-TGAGGTTACAGTGGAGTAGACCGAAGTC-A
* * * *** * *
11195579 GTAATCCTATCT-CTCTGAAGTTACAGTGGAGTGGATTAAAATAAA
1 G--ATCTTATCTCCT-TGAGGTTACAGTGGAGTAGACCGAAGT-CA
* ** * *
11195624 GGATCTTATCT-CTCTGAAGTTACAGCAGAGTAGATCGCA-TCA
1 -GATCTTATCTCCT-TGAGGTTACAGTGGAGTAGACCGAAGTCA
* * * * * *
11195666 GGTCTTATCTCCCTAAGATTACAGTGGAGCAGACCAAAGAATTTCA
1 GATCTTATCTCCTTGAGGTTACAGTGGAGTAGACC---GAA-GTCA
* *
11195712 GATCTTATCTCCCTGAGATTACAGTGGAGTAGA
1 GATCTTATCTCCTTGAGGTTACAGTGGAGTAGA
11195745 TTGAAGCTAG
Statistics
Matches: 451, Mismatches: 113, Indels: 67
0.71 0.18 0.11
Matches are distributed among these distances:
41 112 0.25
42 48 0.11
43 7 0.02
44 176 0.39
45 2 0.00
46 106 0.24
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (42 bp):
GATCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGTCA
Found at i:11195430 original size:217 final size:218
Alignment explanation
Indices: 11195147--11195547 Score: 621
Period size: 217 Copynumber: 1.8 Consensus size: 218
11195137 TCGCATCAGG
* *
11195147 TCTTATCTCCCTGAGATTACAGTGGAGTAGACTGAAGAATTTCAGATTTTATCTCCCTGAGATTA
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGACTGAAG-A--TCAGATCTTATCTCCCTGAGATTA
11195212 CAGC-AGAGCAGATTGAAGTCGA-TAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAAT
63 CAGCGA-AGCAGATTGAAG-CGAGTAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAAT
*
11195275 AAAGGATCTCATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCTTGAGGTT
126 AAAGGATCTCATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATCTTATCTCCTTGAGGTT
11195340 ACAGTGGAGTAGACCGAAGAATTTCGGA
191 ACAGTGGAGTAGACCGAAGAATTTCGGA
* *
11195368 TCTTATCTCCCTGATG-TTACAGTAGAGTAGATTGAAG-TCAGATCTTATCTCCTTGAGATTACA
1 TCTTATCTCCCTGA-GATTACAGTAGAGTAGACTGAAGATCAGATCTTATCTCCCTGAGATTACA
* * * *
11195431 GCGAAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGTGGATTAAAATAAAG
65 GCGAAGCAGATTGAAGCGAGTAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAG
* *
11195496 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGATCTTATCTC
130 GATCTCATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATCTTATCTC
11195548 TCCGAGATTA
Statistics
Matches: 166, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
216 2 0.01
217 129 0.78
218 1 0.01
221 33 0.20
222 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (218 bp):
TCTTATCTCCCTGAGATTACAGTAGAGTAGACTGAAGATCAGATCTTATCTCCCTGAGATTACAG
CGAAGCAGATTGAAGCGAGTAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGG
ATCTCATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATCTTATCTCCTTGAGGTTACAGT
GGAGTAGACCGAAGAATTTCGGA
Found at i:11195475 original size:44 final size:43
Alignment explanation
Indices: 11195371--11195658 Score: 141
Period size: 44 Copynumber: 6.7 Consensus size: 43
11195361 TTTCGGATCT
* * * *
11195371 TATCTCCCTGATGTTACAG-TAGAGTAGATTGAAG-TCAG-ATCT
1 TATCTCTCTGAAGTTACAGCGA-AGTAGATTGAAGCT-AGAATCC
11195413 TATCTC-CTTG-AGATTACAGCGAAGTAGATTGAAGCTAGTAATCC
1 TATCTCTC-TGAAG-TTACAGCGAAGTAGATTGAAGCTAG-AATCC
* * * ** * *
11195457 TATCTCTCTGAAGTTACAGTGGAGTGGATT-AAAATAAAGGATCT
1 TATCTCTCTGAAGTTACAGCGAAGTAGATTGAAGCT--AGAATCC
* * * * *
11195501 TATCTCTCTGAAGTTACAG-TAGAGTAGATCGTATC-AG-ATCT
1 TATCTCTCTGAAGTTACAGCGA-AGTAGATTGAAGCTAGAATCC
* * *
11195542 TATCTCTCCG-AGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
1 TATCTCTCTGAAG-TTACAGCGAAGTAGATTGAAGCTAG-AATCC
* * * ** * *
11195586 TATCTCTCTGAAGTTACAGTGGAGTGGATT-AAAATAAAGGATCT
1 TATCTCTCTGAAGTTACAGCGAAGTAGATTGAAGCT--AGAATCC
11195630 TATCTCTCTGAAGTTACAGC-AGAGTAGAT
1 TATCTCTCTGAAGTTACAGCGA-AGTAGAT
11195659 CGCATCAGGT
Statistics
Matches: 189, Mismatches: 36, Indels: 40
0.71 0.14 0.15
Matches are distributed among these distances:
40 2 0.01
41 30 0.16
42 32 0.17
43 8 0.04
44 107 0.57
45 10 0.05
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (43 bp):
TATCTCTCTGAAGTTACAGCGAAGTAGATTGAAGCTAGAATCC
Found at i:11195561 original size:129 final size:128
Alignment explanation
Indices: 11195365--11195698 Score: 515
Period size: 129 Copynumber: 2.6 Consensus size: 128
11195355 GAAGAATTTC
* * * *
11195365 GGATCTTATCTCCCTGATGTTACAGTAGAGTAGATTGAAGTCAGATCTTATCTCCTTGAGATTAC
1 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAA-TCAGATCTTATCTCC-CGAGATTAC
*
11195430 AGCGAAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGTGGATTAAAATAAA
64 AGCGAAGCAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGTGGATTAAAATAAA
*
11195495 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGATCTTATCTCTCCGAGATTACA
1 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAGATCTTATCTC-CCGAGATTACA
*
11195560 GCGGAGCAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGTGGATTAAAATAAA
65 GCGAAGCAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGTGGATTAAAATAAA
* * * *
11195624 GGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCTCCCTAAGATTACA
1 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAGATCTTATCTCCC-GAGATTACA
* *
11195689 GTGGAGCAGA
65 GCGAAGCAGA
11195699 CCAAAGAATT
Statistics
Matches: 190, Mismatches: 12, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
128 2 0.01
129 152 0.80
130 36 0.19
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (128 bp):
GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAGATCTTATCTCCCGAGATTACAG
CGAAGCAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGTGGATTAAAATAAA
Found at i:11195767 original size:129 final size:127
Alignment explanation
Indices: 11195019--11196391 Score: 422
Period size: 129 Copynumber: 10.7 Consensus size: 127
11195009 GAAGCCATGA
* * * * * *
11195019 TCTTATCTCCCTAAGATTACAGCGGAGCAGATCGAAGA---CACTATCCTATCTCCCTGA-AGTT
1 TCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATGTCA-GATCTTATCTCCCTGAGA-TT
* ** * * * * *
11195080 ACAGTGCAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCA
64 ACAGTGGAGTAGATTGAAGT-AGTGATCTTA--TCTCTGAAGTTACAGTAGAGTAGATCGAATCA
11195145 GG
126 GG
* * *
11195147 TCTTATCTCCCTGAGATTACAGTGGAGTAGACTGAAGAATTTCAGATTTTATCTCCCTGAGATTA
1 TCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG-ATGTCAGATCTTATCTCCCTGAGATTA
** * * * * * ** ** *
11195212 CAGCAGAGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAA
65 CAGTGGAGTAGATTGAAGTAG-TGATCTTATCT--CTGAAGTTACAGTAGAGTAGA-TCGAAT-C
11195277 AGG
125 AGG
* * * * * * * *
11195280 ATCTCATCTCTCTGA-AGTTACAGTAGAGTAGATCG--CA--TCAGGTCTTATCTCCTTGAGGTT
1 -TCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCTGAGATT
** * * * *
11195340 ACAGTGGAGTAGACCGAAGAATTTCGGATCTTATCTCCCTGATGTTACAGTAGAGTAGATTGAAG
64 ACAGTGGAGTAGATTGAAGTA-GT--GATCTTATCT--CTGAAGTTACAGTAGAGTAGATCGAA-
*
11195405 TCAGA
123 TCAGG
* * * * * *
11195410 TCTTATCTCCTTGAGATTACAGCGAAGTAGATTGAAGCTAGT-A-ATCCTATCTCTCTGA-AGTT
1 TCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGAT-GTCAGATCTTATCTCCCTGAGA-TT
* * * *
11195472 ACAGTGGAGTGGATTAAAATAAAG-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATC
64 ACAGTGGAGTAGATTGAAGT--AGTGATCTTA--TCTCTGAAGTTACAGTAGAGTAGATCGAATC
*
11195536 AGA
125 AGG
* * * * *
11195539 TCTTATCTCTCC-GAGATTACAGCGGAGCAGATTGAAGCTAGT-A-ATCCTATCTCTCTGA-AGT
1 TCTTATCTC-CCTGAGATTACAGTGGAGTAGATTGAAGAT-GTCAGATCTTATCTCCCTGAGA-T
* * * * *
11195600 TACAGTGGAGTGGATTAAAATAAAG-GATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCAT
63 TACAGTGGAGTAGATTGAAGT--AGTGATCTTA--TCTCTGAAGTTACAGTAGAGTAGATCGAAT
11195664 CAGG
124 CAGG
* * *** *
11195668 TCTTATCTCCCTAAGATTACAGTGGAGCAGACCAAAGAATTTCAGATCTTATCTCCCTGAGATTA
1 TCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG-ATGTCAGATCTTATCTCCCTGAGATTA
* * * * * *
11195733 CAGTGGAGTAGATTGAAGCTAGTAATCCTATCTCTTACAGTGAC-G--GATTA-A---AATAAAG
65 CAGTGGAGTAGATTGAAG-TAGTGATCTTATCTCTGA-AGTTACAGTAGAGTAGATCGAAT-CAG
11195791 G
127 G
* * * * * * *
11195792 ATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCG--TAT-T-AGGTCTTATATCCCTGAGATTA
1 -TCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCTGAGATTA
* * * *** **
11195853 CAGTAGAGTAGATTGAAGCTAGTAATCTTATCTCCCTG-AGATTACAGTGGAACGGATTAAAATA
65 CAGTGGAGTAGATTGAAG-TAGTGATCTTATCT--CTGAAG-TTACAGTAGAGTAGA-TCGAAT-
*
11195917 AAGG
124 CAGG
* * ** *
11195921 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAG---GTCG-TGTCAGATTTTATCTCCCTGAGATT
1 -TCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCTGAGATT
** ** * * * * * ** **
11195981 ACAGCAGAACAGATTAAAGCTAGTAATCCTACCTCCCTG-AGATTACAGTGGAGCGGATTAAAAT
64 ACAGTGGAGTAGATTGAAG-TAGTGATCTTA--TCTCTGAAG-TTACAGTAGAGTAGA-TCGAAT
*
11196045 AAAGG
124 -CAGG
* * *
11196050 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-T--CG-TGTCAGATCTTATCTCCCTGAGATT
1 -TCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCTGAGATT
* * * * * * * * **
11196110 ACAGCGGAGCAGATTAAAGCTAGTAATCCTACCTCCTTG-AGATTACAGTGGAGCAGATTAAAAT
64 ACAGTGGAGTAGATTGAAG-TAGTGATCTTATCT-C-TGAAG-TTACAGTAGAGTAGA-TCGAAT
*
11196174 AAAGG
124 -CAGG
* * *
11196179 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-T--CG-TGTCAGATCTTATCTCCCTGAGATT
1 -TCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCTGAGATT
* * * * * * * * * **
11196239 ACAGCGGAGCATATTAAAGCTAGTAATCCTACCTCCCTG-AGATTACAGTGGAGCAGATTAAAAT
64 ACAGTGGAGTAGATTGAAG-TAGTGATCTTA--TCTCTGAAG-TTACAGTAGAGTAGA-TCGAAT
*
11196303 AAAGG
124 -CAGG
* * *
11196308 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-T--CG-TGTCAGATCTTATCTCCCTGAGATT
1 -TCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCTGAGATT
* **
11196368 ACAGCGGAACAGATTGAAGATAGT
64 ACAGTGGAGTAGATTGAAG-TAGT
11196392 AATTCTATCT
Statistics
Matches: 1038, Mismatches: 145, Indels: 123
0.79 0.11 0.09
Matches are distributed among these distances:
120 53 0.05
121 4 0.00
122 5 0.00
123 2 0.00
124 5 0.00
125 28 0.03
126 2 0.00
127 6 0.01
128 36 0.03
129 658 0.63
130 47 0.05
131 120 0.12
132 38 0.04
133 5 0.00
134 29 0.03
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (127 bp):
TCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGATGTCAGATCTTATCTCCCTGAGATTAC
AGTGGAGTAGATTGAAGTAGTGATCTTATCTCTGAAGTTACAGTAGAGTAGATCGAATCAGG
Found at i:11196392 original size:129 final size:129
Alignment explanation
Indices: 11195709--11196792 Score: 1576
Period size: 129 Copynumber: 8.5 Consensus size: 129
11195699 CCAAAGAATT
* *
11195709 TCAGATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGTAATCCTATCT--C-----
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* *
11195767 TTACAGT-GA-CGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGTA
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * * ** * *
11195829 TTAGGTCTTATATCCCTGAGATTACAGTAGAGTAGATTGAAGCTAGTAATCTTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* *
11195894 TTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGGTCGTG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * * * *
11195958 TCAGATTTTATCTCCCTGAGATTACAGCAGAACAGATTAAAGCTAGTAATCCTACCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
11196023 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * *
11196087 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTACCTCCTTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
*
11196152 TTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * *
11196216 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCATATTAAAGCTAGTAATCCTACCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
*
11196281 TTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * * *
11196345 TCAGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGATAGTAATTCTATCTCTCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
** * *
11196410 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAAAAGATTGTA
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * * * *
11196474 TCAGGTCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGATAGTAATTCTATCTCTCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* *
11196539 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCGTA
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
*
11196603 TCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* * * **
11196668 TTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCTTTGAAGTTATAGTAGAGTAGATCGCA
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * * * * * * * * *
11196732 TCAGGTTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC-CGATAATTCTATCTCCCT
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAG-TAATCCTATCTCCCT
11196793 AGTGGGCAGT
Statistics
Matches: 894, Mismatches: 60, Indels: 11
0.93 0.06 0.01
Matches are distributed among these distances:
120 52 0.06
122 1 0.00
127 7 0.01
128 3 0.00
129 831 0.93
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (129 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
Found at i:11196499 original size:41 final size:41
Alignment explanation
Indices: 11196438--11196629 Score: 122
Period size: 44 Copynumber: 4.5 Consensus size: 41
11196428 AAATAAAGGA
11196438 TCTTATCTCTCTGA-AGTTACAGTAGAAAAGATTGTATCAGG
1 TCTTATCTCTCTGAGA-TTACAGTAGAAAAGATTGTATCAGG
* ** * *
11196479 TCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGAT-A-G
1 TCTTATCTCTCTGAGATTACAGTAGAAAAGATTG--TATCAGG
* * *** ** *
11196520 TAATTCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAATAAAGG
1 T--CT-TATCTCTCTGAGATTACAGTAGAAAAGATT-GTAT-CAGG
* *
11196566 ATCTTATCTCTCTGA-AGTTACAGTAGAGAAGATCGTATCAGG
1 -TCTTATCTCTCTGAGA-TTACAGTAGAAAAGATTGTATCAGG
*
11196608 TCTTATCTCCCTGAGATTACAG
1 TCTTATCTCTCTGAGATTACAG
11196630 CGGAGCAGAT
Statistics
Matches: 117, Mismatches: 21, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
41 49 0.42
42 6 0.05
43 8 0.07
44 50 0.43
45 2 0.02
46 1 0.01
47 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (41 bp):
TCTTATCTCTCTGAGATTACAGTAGAAAAGATTGTATCAGG
Found at i:11197717 original size:7 final size:7
Alignment explanation
Indices: 11197705--11197729 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11197695 TACCACTGTT
11197705 TTTTTTA
1 TTTTTTA
11197712 TTTTTTA
1 TTTTTTA
11197719 TTTTTTA
1 TTTTTTA
11197726 TTTT
1 TTTT
11197730 AACGAGAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:11202807 original size:6 final size:6
Alignment explanation
Indices: 11202796--11202820 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
11202786 TAACAATTAA
11202796 CTGCTC CTGCTC CTGCTC CTGCTC C
1 CTGCTC CTGCTC CTGCTC CTGCTC C
11202821 GTGAGGTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.52, G:0.16, T:0.32
Consensus pattern (6 bp):
CTGCTC
Found at i:11203669 original size:12 final size:12
Alignment explanation
Indices: 11203652--11203677 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11203642 CATGATCCAT
11203652 CTGTTGTTGTTG
1 CTGTTGTTGTTG
11203664 CTGTTGTTGTTG
1 CTGTTGTTGTTG
11203676 CT
1 CT
11203678 TCATGGGGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.12, G:0.31, T:0.58
Consensus pattern (12 bp):
CTGTTGTTGTTG
Found at i:11203749 original size:39 final size:39
Alignment explanation
Indices: 11203671--11203749 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
11203661 TTGCTGTTGT
* * *
11203671 TGTTGCTTCATGGGGTCATCATGCCCCAACTGGTGATCC
1 TGTTGCTGCATGGGGTCATCATGCCCCAACTGATCATCC
* * *
11203710 TGTTGCTGCATTGGGTTATCATGCCCTAACTGATCATCC
1 TGTTGCTGCATGGGGTCATCATGCCCCAACTGATCATCC
11203749 T
1 T
11203750 CTATATTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.16, C:0.27, G:0.23, T:0.34
Consensus pattern (39 bp):
TGTTGCTGCATGGGGTCATCATGCCCCAACTGATCATCC
Found at i:11203864 original size:402 final size:401
Alignment explanation
Indices: 11202825--11203993 Score: 1776
Period size: 399 Copynumber: 2.9 Consensus size: 401
11202815 TGCTCCGTGA
* * * *
11202825 GGTCATCATGCCCCAACAGATCATCATGATCCATC------TATTGCTATTGTTGTTGCCTT-GT
1 GGTCATCATGCCCCAACGGATCATCATGATCCATCTGTTGTTGTTGCTGTTGTTGTTG-CTTCAT
* * * * * *
11202883 AGGGTCATCATGCCCCAATTAATGATCTTGCTGCTGCATAGGGTTATCATGCCCTAACTGATCAT
65 GGGGTCATCATGCCCCAACTGATGATCATGTTGCTGCATTGGGTTATCATGCCCTAACTGATCAT
* *
11202948 CCTC-TATCCAAGAGCTGATCTAAGTTCACTACAAAAATTTAAATAACTTAAATCTAATAAGTAA
130 CCTCATATCCTAGAGCTGATCTAAGTTCTCTACAAAAATTTAAATAACTTAAATCTAATAAGTAA
* * * * *
11203012 TATTAGATAATGAATTCGATTTGGAAAATAGCTAACGAACATTATCAAAATGAGAAAGCAAGTTG
195 TATTAGATAGTGAATTTGGTTTGGAAAATATCTAACGAACATTATCAAAATGAGAGAGCAAGTTG
* * *
11203077 TATTAAGAGTCCCCATGTCTCTCATTTAAACACAATCCCCTTGTTAAGGTTATGTAAAGAAGAAA
260 TAATAAGAGTCCCCATGTCTCTCATTTAGACACAATCCCCATGTTAAGGTTATGTAAAGAAGAAA
* *
11203142 AATCAACTTACCTATTTCCCCATCATGCTCTTGTGTTGGAGCTGTTATTTCTTCCATCAACTGCT
325 AATCAACTTACCTATTTCCCCATCATGCTCTTGTGTTGGAGCTGCTATCTCTTCCATCAACTGCT
11203207 CCTTCTTCATGG
390 CCTTCTTCATGG
* *
11203219 GGTCATCATGCCCCAACGAATCATCATGATCCATCTGTTGTTG-T--TGTTGTCGTTGCTTCATG
1 GGTCATCATGCCCCAACGGATCATCATGATCCATCTGTTGTTGTTGCTGTTGTTGTTGCTTCATG
* *
11203281 GGGTCATCATGCTCCAACTGATGATCATGTTGCTGCATTGGGTTATCATGCCCCAACTGATCATC
66 GGGTCATCATGCCCCAACTGATGATCATGTTGCTGCATTGGGTTATCATGCCCTAACTGATCATC
* * *
11203346 CTCCATATCCTATAACTGATATAAGTTCTCTACAAAAATTTAAATAACTTAAATCTAATAAGTAA
131 CT-CATATCCTAGAGCTGATCTAAGTTCTCTACAAAAATTTAAATAACTTAAATCTAATAAGTAA
* *
11203411 TATTAGATAGTAAATTTGGTTTAGAAAATATCTAACGAACATTATCAAAATGAGAGAGCAAGTTG
195 TATTAGATAGTGAATTTGGTTTGGAAAATATCTAACGAACATTATCAAAATGAGAGAGCAAGTTG
*
11203476 TAATAAGAGTCCCCATGTCTCTTATTTAGACACAATCCCCATGTTAAGGTTATGTAAAGAAGAAA
260 TAATAAGAGTCCCCATGTCTCTCATTTAGACACAATCCCCATGTTAAGGTTATGTAAAGAAGAAA
* *
11203541 AATCAACTTACCTATTTCTCCATCATGCTCTTGTGTTGGAGCTGCTATCTCTTCCATCAGCTGCT
325 AATCAACTTACCTATTTCCCCATCATGCTCTTGTGTTGGAGCTGCTATCTCTTCCATCAACTGCT
11203606 -CTTGCTTCATGG
390 CCTT-CTTCATGG
*
11203618 GGTCATCATGCCCCAACGGATCTTCATGATCCATCTGTTGTTGTTGCTGTTGTTGTTGCTTCATG
1 GGTCATCATGCCCCAACGGATCATCATGATCCATCTGTTGTTGTTGCTGTTGTTGTTGCTTCATG
* *
11203683 GGGTCATCATGCCCCAACTGGTGATCCTGTTGCTGCATTGGGTTATCATGCCCTAACTGATCATC
66 GGGTCATCATGCCCCAACTGATGATCATGTTGCTGCATTGGGTTATCATGCCCTAACTGATCATC
** * *
11203748 CTCTATATTTTAGAGCTGATCTAAGTTCTCTACAGAAATTTAAATAACTTAAATCTAACAAGTAA
131 CTC-ATATCCTAGAGCTGATCTAAGTTCTCTACAAAAATTTAAATAACTTAAATCTAATAAGTAA
* * *
11203813 TATTAGATAGTGAATTTGGTTTGGAAAATATCTATCAAACATTATCAAAATGAAAGAGCAAGTTG
195 TATTAGATAGTGAATTTGGTTTGGAAAATATCTAACGAACATTATCAAAATGAGAGAGCAAGTTG
* *
11203878 TAATGAGAGTCCCCATGTCTCTCATTTAGACACAATCCCCATGTTAAGGTTAAGT-AA-AA-AAA
260 TAATAAGAGTCCCCATGTCTCTCATTTAGACACAATCCCCATGTTAAGGTTATGTAAAGAAGAAA
11203940 AATCAACTTACCTATTTCCCCATCATGCTCTTGTG-TGGAGCTGCTATCTCTTCC
325 AATCAACTTACCTATTTCCCCATCATGCTCTTGTGTTGGAGCTGCTATCTCTTCC
11203994 TCTTGATTTT
Statistics
Matches: 704, Mismatches: 57, Indels: 24
0.90 0.07 0.03
Matches are distributed among these distances:
394 33 0.05
396 3 0.00
397 70 0.10
398 23 0.03
399 322 0.46
400 4 0.01
401 3 0.00
402 246 0.35
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (401 bp):
GGTCATCATGCCCCAACGGATCATCATGATCCATCTGTTGTTGTTGCTGTTGTTGTTGCTTCATG
GGGTCATCATGCCCCAACTGATGATCATGTTGCTGCATTGGGTTATCATGCCCTAACTGATCATC
CTCATATCCTAGAGCTGATCTAAGTTCTCTACAAAAATTTAAATAACTTAAATCTAATAAGTAAT
ATTAGATAGTGAATTTGGTTTGGAAAATATCTAACGAACATTATCAAAATGAGAGAGCAAGTTGT
AATAAGAGTCCCCATGTCTCTCATTTAGACACAATCCCCATGTTAAGGTTATGTAAAGAAGAAAA
ATCAACTTACCTATTTCCCCATCATGCTCTTGTGTTGGAGCTGCTATCTCTTCCATCAACTGCTC
CTTCTTCATGG
Found at i:11206651 original size:2 final size:2
Alignment explanation
Indices: 11206644--11206679 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
11206634 AATCATTTTG
*
11206644 AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11206680 CTTAAACTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:11215606 original size:13 final size:13
Alignment explanation
Indices: 11215588--11215651 Score: 110
Period size: 13 Copynumber: 4.9 Consensus size: 13
11215578 ACACTCAAAT
*
11215588 TTCTCAAAAGTAC
1 TTCTCAAAAGCAC
11215601 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
*
11215614 TTCTGAAAAGCAC
1 TTCTCAAAAGCAC
11215627 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
11215640 TTCTCAAAAGCA
1 TTCTCAAAAGCA
11215652 ATAAAGAACT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 48 1.00
ACGTcount: A:0.39, C:0.27, G:0.09, T:0.25
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:11216417 original size:15 final size:17
Alignment explanation
Indices: 11216385--11216426 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
11216375 TATTTATATT
*
11216385 TTCTAAAAAATTATAAA
1 TTCTAAAAAATTAAAAA
11216402 TT-TAAAAAA-TAAAAA
1 TTCTAAAAAATTAAAAA
11216417 TTCTAAAAAA
1 TTCTAAAAAA
11216427 GTTCTAAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 7 0.30
16 14 0.61
17 2 0.09
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (17 bp):
TTCTAAAAAATTAAAAA
Found at i:11225179 original size:30 final size:30
Alignment explanation
Indices: 11225143--11225205 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
11225133 GGTATATGTC
*
11225143 GACTGATGGGGCAGATAAGATTGAGTTTAT
1 GACTGATGGGGCAGATAAGATTGAGCTTAT
* *
11225173 GACTGATGGGGCAGATAGGATTGGGCTTAT
1 GACTGATGGGGCAGATAAGATTGAGCTTAT
11225203 GAC
1 GAC
11225206 CGATATTTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.10, G:0.37, T:0.27
Consensus pattern (30 bp):
GACTGATGGGGCAGATAAGATTGAGCTTAT
Found at i:11233907 original size:16 final size:16
Alignment explanation
Indices: 11233886--11233940 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
11233876 AAGCTCTCTC
11233886 TCTTTTTCACTTATTT
1 TCTTTTTCACTTATTT
*
11233902 TC-TTTTCAAGCTCT-CTT
1 TCTTTTTC-A-CT-TATTT
*
11233919 TCTTTTTCACTCATTT
1 TCTTTTTCACTTATTT
11233935 TCTTTT
1 TCTTTT
11233941 CAAGCTCTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
15 5 0.16
16 13 0.42
17 7 0.23
18 6 0.19
ACGTcount: A:0.11, C:0.24, G:0.02, T:0.64
Consensus pattern (16 bp):
TCTTTTTCACTTATTT
Found at i:11233908 original size:33 final size:33
Alignment explanation
Indices: 11233866--11233963 Score: 160
Period size: 33 Copynumber: 2.9 Consensus size: 33
11233856 TCTTCACACG
* *
11233866 TTTCTTTTTCAAGCTCTCTCTCTTTTTCACTTAT
1 TTTC-TTTTCAAGCTCTCTTTCTTTTTCACTCAT
11233900 TTTCTTTTCAAGCTCTCTTTCTTTTTCACTCAT
1 TTTCTTTTCAAGCTCTCTTTCTTTTTCACTCAT
*
11233933 TTTCTTTTCAAGCTCTCTTTCTTTTGCACTC
1 TTTCTTTTCAAGCTCTCTTTCTTTTTCACTC
11233964 GTTTCATTTA
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
33 57 0.93
34 4 0.07
ACGTcount: A:0.11, C:0.28, G:0.04, T:0.57
Consensus pattern (33 bp):
TTTCTTTTCAAGCTCTCTTTCTTTTTCACTCAT
Found at i:11233922 original size:17 final size:18
Alignment explanation
Indices: 11233866--11233957 Score: 92
Period size: 18 Copynumber: 5.4 Consensus size: 18
11233856 TCTTCACACG
11233866 TTTCTTTTTCAAGCTCTC
1 TTTCTTTTTCAAGCTCTC
* *
11233884 TCTCTTTTTC-A-CT-TA
1 TTTCTTTTTCAAGCTCTC
11233899 TTT-TCTTTTCAAGCTCTC
1 TTTCT-TTTTCAAGCTCTC
11233917 TTTCTTTTTC-A-CTCAT-
1 TTTCTTTTTCAAGCTC-TC
11233933 TTTC-TTTTCAAGCTCTC
1 TTTCTTTTTCAAGCTCTC
11233950 TTTCTTTT
1 TTTCTTTT
11233958 GCACTCGTTT
Statistics
Matches: 60, Mismatches: 4, Indels: 20
0.71 0.05 0.24
Matches are distributed among these distances:
14 1 0.02
15 13 0.22
16 12 0.20
17 12 0.20
18 21 0.35
19 1 0.02
ACGTcount: A:0.11, C:0.26, G:0.03, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAAGCTCTC
Found at i:11234059 original size:6 final size:6
Alignment explanation
Indices: 11234006--11234065 Score: 56
Period size: 6 Copynumber: 10.7 Consensus size: 6
11233996 GCTTTCCTCT
* * *
11234006 TTTTCT TTTTCC TTTTCA TTTTCA TTTTC- TTTTC- TTTTAA TTTT--
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA
*
11234050 TTTTCA TTTTTA TTTT
1 TTTTCA TTTTCA TTTT
11234066 TCTCCTCTCG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
4 4 0.09
5 9 0.19
6 34 0.72
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTCA
Found at i:11234066 original size:16 final size:16
Alignment explanation
Indices: 11234018--11234066 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
11234008 TTCTTTTTCC
*
11234018 TTTTCATTTTCATTTT
1 TTTTCATTTTAATTTT
11234034 CTTTTC-TTTTAATTTT
1 -TTTTCATTTTAATTTT
*
11234050 TTTTCATTTTTATTTT
1 TTTTCATTTTAATTTT
11234066 T
1 T
11234067 CTCCTCTCGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 5 0.17
16 19 0.66
17 5 0.17
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTCATTTTAATTTT
Found at i:11234669 original size:17 final size:17
Alignment explanation
Indices: 11234647--11234680 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
11234637 AGCAAAGTAT
11234647 TAAAATA-AATAAATAAA
1 TAAAATAGAA-AAATAAA
11234664 TAAAATAGAAAAATAAA
1 TAAAATAGAAAAATAAA
11234681 CCTCACCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (17 bp):
TAAAATAGAAAAATAAA
Found at i:11241546 original size:16 final size:17
Alignment explanation
Indices: 11241527--11241564 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
11241517 ATTCATTTAA
11241527 TCAATTAAATAATTTT-
1 TCAATTAAATAATTTTC
11241543 TCAATTAAATAATTTTC
1 TCAATTAAATAATTTTC
11241560 TCAAT
1 TCAAT
11241565 CTAATTTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (17 bp):
TCAATTAAATAATTTTC
Found at i:11248596 original size:115 final size:114
Alignment explanation
Indices: 11248430--11248645 Score: 274
Period size: 115 Copynumber: 1.9 Consensus size: 114
11248420 TTTCGACTTG
* * * * *
11248430 TTTGGAATAGGTATCGGCCATGAGTCTGATTTCAATGGGCTTTGAACTAAGTTAAAATGGATGAA
1 TTTGGAACAAGTATCGACCATGAGTCTAATTTCAATGGGCTTTCAACTAAGTTAAAATGGATGAA
* * * * *
11248495 GAGTTGCTTT-GAGCATCTCCTAGAGAATCCTACACTACATCTTCTAACA
66 GAGTT-CTTTCAAACATCTCCCAAAGAATCCAACACTACATCTTCTAACA
* * *
11248544 TTTGGAACAAGTATCGACCATATAGTCTAATTTCAATGGG-TTTCAGATTAAGTTAAAATGGTTG
1 TTTGGAACAAGTATCGACCAT-GAGTCTAATTTCAATGGGCTTTCA-ACTAAGTTAAAATGGATG
11248608 AAGAGTTCTTTCAAACATCTCCCAAAGAATCCAACACT
64 AAGAGTTCTTTCAAACATCTCCCAAAGAATCCAACACT
11248646 CAAACACATA
Statistics
Matches: 86, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
114 26 0.30
115 60 0.70
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (114 bp):
TTTGGAACAAGTATCGACCATGAGTCTAATTTCAATGGGCTTTCAACTAAGTTAAAATGGATGAA
GAGTTCTTTCAAACATCTCCCAAAGAATCCAACACTACATCTTCTAACA
Found at i:11254347 original size:19 final size:19
Alignment explanation
Indices: 11254309--11254357 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
11254299 ATTACTAAAC
*
11254309 CAGCCCAAACATTAAACCCT
1 CAGCCCAAA-TTTAAACCCT
*
11254329 CAGCCCAAATTTTAACCCT
1 CAGCCCAAATTTAAACCCT
*
11254348 AAGCCCAAAT
1 CAGCCCAAAT
11254358 GGCCCACAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 17 0.65
20 9 0.35
ACGTcount: A:0.39, C:0.37, G:0.06, T:0.18
Consensus pattern (19 bp):
CAGCCCAAATTTAAACCCT
Found at i:11255002 original size:108 final size:107
Alignment explanation
Indices: 11254813--11255165 Score: 568
Period size: 108 Copynumber: 3.3 Consensus size: 107
11254803 ATATCCTTTT
11254813 AAATAGCTAAAAATATCCTTTTAAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAG
1 AAATAGCT-AAAATATCCTTTTAAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAG
*
11254878 AAAGCGTGCCCTAACGTGCTGGGTTTCGGTTTTTCGTTCGACC
65 AAAGCGTGCCCTAACGTGCTGGGTTTCGATTTTTCGTTCGACC
*
11254921 AAATAGCTAAAAATATCCTTTTAAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAG
1 AAATAGCT-AAAATATCCTTTTAAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAG
11254986 AAAGCGTGCCCTAACGTGCTGGGTTTCGATTTTTTCGTTCGACC
65 AAAGCGTGCCCTAACGTGCTGGGTTTCGA-TTTTTCGTTCGACC
* * * *
11255030 AAATAGCTAAAATATCCTTCTAAAATTTCAAAATAAGGCAATATTTTGCGTTTAGAAATTCGAGA
1 AAATAGCTAAAATATCCTTTTAAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAGA
* *
11255095 AAACGTGCCCTAACGTGCTGGGTTTCGATTTCTCGTT-GAACC
66 AAGCGTGCCCTAACGTGCTGGGTTTCGATTTTTCGTTCG-ACC
*
11255137 AAATAGC-CAAATATCCTTTT-AAATTTCAA
1 AAATAGCTAAAATATCCTTTTAAAATTTCAA
11255166 TCCATGTCAT
Statistics
Matches: 232, Mismatches: 11, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
105 9 0.04
106 12 0.05
107 18 0.08
108 171 0.74
109 22 0.09
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (107 bp):
AAATAGCTAAAATATCCTTTTAAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAGA
AAGCGTGCCCTAACGTGCTGGGTTTCGATTTTTCGTTCGACC
Found at i:11255732 original size:28 final size:28
Alignment explanation
Indices: 11255678--11255741 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
11255668 CCAAATATAA
11255678 AAAAAAAAATTGAGAAATAAGAAAAAAT
1 AAAAAAAAATTGAGAAATAAGAAAAAAT
* *
11255706 ACAAAAAAAATCTGATAAAT-A-ATAAAAT
1 A-AAAAAAAAT-TGAGAAATAAGAAAAAAT
11255734 AAAAAAAA
1 AAAAAAAA
11255742 GTAATATTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 7 0.22
28 8 0.25
29 10 0.31
30 7 0.22
ACGTcount: A:0.75, C:0.03, G:0.06, T:0.16
Consensus pattern (28 bp):
AAAAAAAAATTGAGAAATAAGAAAAAAT
Found at i:11256287 original size:200 final size:201
Alignment explanation
Indices: 11255933--11256333 Score: 795
Period size: 200 Copynumber: 2.0 Consensus size: 201
11255923 AATAAAATGT
11255933 ACTTAATTTATAATTATAAAACTTTGACTTAAATTATTTGAAAATAAATGAAATGTTAAATTATG
1 ACTTAATTTATAATTATAAAACTTTGACTTAAATTATTTGAAAATAAATGAAATGTTAAATTATG
11255998 TGATTTTCAAAGTCCTAAATACTTTATTAGCAGAAAATTATATAAATATTTTAATTTTATTAAAT
66 TGATTTTCAAAGTCCTAAATACTTTATTAGCAGAAAATTATATAAATATTTTAATTTTATTAAAT
11256063 AAATTTAACTGGATCATAAATAAAAAGTACATATTACTTTAATTCATGTATATATTTTATTAATA
131 AAATTTAACTGGATCATAAATAAAAAGTACATATTACTTTAATTCATGTATATATTTTATTAATA
11256128 TTACAG
196 TTACAG
11256134 ACTTAATTTA-AATTATAAAACTTTGACTTAAATTATTTGAAAATAAATGAAATGTTAAATTATG
1 ACTTAATTTATAATTATAAAACTTTGACTTAAATTATTTGAAAATAAATGAAATGTTAAATTATG
11256198 TGATTTTCAAAGTCCTAAATACTTTATTAGCAGAAAATTATATAAATATTTTAATTTTATTAAAT
66 TGATTTTCAAAGTCCTAAATACTTTATTAGCAGAAAATTATATAAATATTTTAATTTTATTAAAT
11256263 AAATTTAACTGGATCATAAATAAAAAGTACATATTACTTTAATTCATGTATATATTTTATTAATA
131 AAATTTAACTGGATCATAAATAAAAAGTACATATTACTTTAATTCATGTATATATTTTATTAATA
11256328 TTACAG
196 TTACAG
11256334 TACAAATACT
Statistics
Matches: 200, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
200 190 0.95
201 10 0.05
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (201 bp):
ACTTAATTTATAATTATAAAACTTTGACTTAAATTATTTGAAAATAAATGAAATGTTAAATTATG
TGATTTTCAAAGTCCTAAATACTTTATTAGCAGAAAATTATATAAATATTTTAATTTTATTAAAT
AAATTTAACTGGATCATAAATAAAAAGTACATATTACTTTAATTCATGTATATATTTTATTAATA
TTACAG
Found at i:11263598 original size:20 final size:19
Alignment explanation
Indices: 11263565--11263632 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 19
11263555 TCTCTTTCAA
11263565 CAAAA-ATTTA-AAAAAAT
1 CAAAATATTTATAAAAAAT
* **
11263582 CAAAATAATTTTTAAAATTT
1 CAAAAT-ATTTATAAAAAAT
*
11263602 CAAAATATTTATAAAAATT
1 CAAAATATTTATAAAAAAT
*
11263621 CCAAA-ATTTATA
1 CAAAATATTTATA
11263633 TTTTTCAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
17 5 0.12
18 7 0.17
19 19 0.45
20 11 0.26
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (19 bp):
CAAAATATTTATAAAAAAT
Found at i:11266665 original size:17 final size:18
Alignment explanation
Indices: 11266643--11266677 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
11266633 AAGCAGTTCA
11266643 TTTCTTCTT-CTTTTTTT
1 TTTCTTCTTGCTTTTTTT
*
11266660 TTTCTTTTTGCTTTTTTT
1 TTTCTTCTTGCTTTTTTT
11266678 GAAAAGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (18 bp):
TTTCTTCTTGCTTTTTTT
Found at i:11267506 original size:27 final size:25
Alignment explanation
Indices: 11267454--11267506 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 25
11267444 AAACTCTTCT
*
11267454 AAAAGAAACTCAAGAGAAATTCTTA
1 AAAAGAAACTCAAGAGAAATTATTA
*
11267479 AAAAGAAAACTCAAAGAGAATTTATTA
1 AAAAG-AAACTC-AAGAGAAATTATTA
11267506 A
1 A
11267507 CTCAAAAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 6 0.25
27 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.11, T:0.21
Consensus pattern (25 bp):
AAAAGAAACTCAAGAGAAATTATTA
Found at i:11267726 original size:8 final size:8
Alignment explanation
Indices: 11267699--11267736 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
11267689 ATTTAATAAT
11267699 TAATAAAA
1 TAATAAAA
*
11267707 -AATTAGAA
1 TAA-TAAAA
11267715 TAATAAAA
1 TAATAAAA
11267723 TAATAAAA
1 TAATAAAA
11267731 TAATAA
1 TAATAA
11267737 GAGCTGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
7 2 0.08
8 22 0.85
9 2 0.08
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (8 bp):
TAATAAAA
Found at i:11283947 original size:20 final size:20
Alignment explanation
Indices: 11283919--11283973 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
11283909 GATACCAGAA
*
11283919 AAAACTTATCGATAC-TGCTTC
1 AAAA-TTATCGATACTTG-ATC
11283940 AAAATTATCGATACTTGATC
1 AAAATTATCGATACTTGATC
*
11283960 AAAAGTATCGATAC
1 AAAATTATCGATAC
11283974 ACATCGGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
20 25 0.81
21 6 0.19
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (20 bp):
AAAATTATCGATACTTGATC
Found at i:11285150 original size:21 final size:20
Alignment explanation
Indices: 11285104--11285152 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
11285094 TTTTGCCAAG
* **
11285104 TATCGATAAATTTAAATGAA
1 TATCGATAAATTCAAAAAAA
11285124 TATCGATAAATTCAAAAAAA
1 TATCGATAAATTCAAAAAAA
11285144 TTATCGATA
1 -TATCGATA
11285153 CATTTTCTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (20 bp):
TATCGATAAATTCAAAAAAA
Found at i:11286984 original size:29 final size:30
Alignment explanation
Indices: 11286939--11286998 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
11286929 TCTGATCCAA
*
11286939 TGTGCAATTTGATACA-TAAACTTTAATTT
1 TGTGCAATTTGACACATTAAACTTTAATTT
*
11286968 TGTGCAATTAT-ACACATTAAATTTTAATTT
1 TGTGCAATT-TGACACATTAAACTTTAATTT
11286998 T
1 T
11286999 AATTCATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (30 bp):
TGTGCAATTTGACACATTAAACTTTAATTT
Found at i:11288403 original size:80 final size:81
Alignment explanation
Indices: 11288293--11288458 Score: 325
Period size: 80 Copynumber: 2.1 Consensus size: 81
11288283 ATACAGATTT
11288293 TTATAATTAAATTATTAAAAATCAAACCTATATTCCTAGTATATGTAACACTAAGCTTAAACAAA
1 TTATAATTAAATTATTAAAAATCAAACCTATATTCCTAGTATATGTAACACTAAGCTTAAACAAA
11288358 ATACGTAATAGAGAAA
66 ATACGTAATAGAGAAA
11288374 TTATAATTAAATT-TTAAAAATCAAACCTATATTCCTAGTATATGTAACACTAAGCTTAAACAAA
1 TTATAATTAAATTATTAAAAATCAAACCTATATTCCTAGTATATGTAACACTAAGCTTAAACAAA
11288438 ATACGTAATAGAGAAA
66 ATACGTAATAGAGAAA
11288454 TTATA
1 TTATA
11288459 TTCTTCATAT
Statistics
Matches: 85, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
80 72 0.85
81 13 0.15
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (81 bp):
TTATAATTAAATTATTAAAAATCAAACCTATATTCCTAGTATATGTAACACTAAGCTTAAACAAA
ATACGTAATAGAGAAA
Done.