Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 35 of 79
Found at i:12019449 original size:8 final size:8
Alignment explanation
Indices: 12019436--12019507 Score: 62
Period size: 8 Copynumber: 9.4 Consensus size: 8
12019426 TTTTAGTTCT
12019436 TTTATATA
1 TTTATATA
12019444 TTTATATA
1 TTTATATA
12019452 TTTATATA
1 TTTATATA
* *
12019460 TTTTTTTA
1 TTTATATA
*
12019468 TTT-TTTA
1 TTTATATA
12019475 TATT-T-T-
1 T-TTATATA
*
12019481 TTTATAAA
1 TTTATATA
*
12019489 TTTATACA
1 TTTATATA
12019497 TTTATATA
1 TTTATATA
12019505 TTT
1 TTT
12019508 GTAAAATAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
5 2 0.04
6 2 0.04
7 6 0.11
8 45 0.82
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (8 bp):
TTTATATA
Found at i:12019688 original size:18 final size:20
Alignment explanation
Indices: 12019653--12019689 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
12019643 TGTGAACAAG
*
12019653 TATACTTTTTAATTAATTTA
1 TATACTTTTTAATAAATTTA
12019673 TATA-TTTTTAA-AAATTT
1 TATACTTTTTAATAAATTT
12019690 CTTTTAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 7 0.44
20 4 0.25
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
TATACTTTTTAATAAATTTA
Found at i:12036119 original size:7 final size:7
Alignment explanation
Indices: 12036107--12036146 Score: 64
Period size: 7 Copynumber: 5.9 Consensus size: 7
12036097 TTAAAAAATA
12036107 ATTTAAT
1 ATTTAAT
12036114 ATTTAAT
1 ATTTAAT
12036121 ATTTAAT
1 ATTTAAT
12036128 ATTTAAT
1 ATTTAAT
*
12036135 AGTT-AT
1 ATTTAAT
12036141 ATTTAA
1 ATTTAA
12036147 GCAATTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 5 0.17
7 25 0.83
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (7 bp):
ATTTAAT
Found at i:12037251 original size:18 final size:17
Alignment explanation
Indices: 12037200--12037255 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 17
12037190 CAACCAAGTA
12037200 AATTAATTG-ATTTTTT
1 AATTAATTGAATTTTTT
* *
12037216 AATTAAAT-AA--ATTT
1 AATTAATTGAATTTTTT
12037230 AATTAATTGAATTTTTT
1 AATTAATTGAATTTTTT
12037247 AAATTAATT
1 -AATTAATT
12037256 AATGCAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 10 0.32
15 2 0.06
16 8 0.26
17 3 0.10
18 8 0.26
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (17 bp):
AATTAATTGAATTTTTT
Found at i:12048860 original size:21 final size:21
Alignment explanation
Indices: 12048834--12048873 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
12048824 CCAAAAATTA
*
12048834 TTTTTTTATA-ATTTTTTAAC
1 TTTTTTTATATATTCTTTAAC
12048854 TTTTTTTATATATTCTTTAA
1 TTTTTTTATATATTCTTTAA
12048874 AATTTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTTTTATATATTCTTTAAC
Found at i:12048879 original size:21 final size:20
Alignment explanation
Indices: 12048835--12048880 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
12048825 CAAAAATTAT
* **
12048835 TTTTTTATAATTTTTTAACT
1 TTTTTTATAATTCTTTAAAA
12048855 TTTTTTATATATTCTTTAAAA
1 TTTTTTATA-ATTCTTTAAAA
12048876 TTTTT
1 TTTTT
12048881 ATTTTTATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTTTATAATTCTTTAAAA
Found at i:12048898 original size:22 final size:21
Alignment explanation
Indices: 12048828--12048898 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
12048818 CAAAATCCAA
*
12048828 AAATTATTTTTTTATAATTTTT
1 AAATTTTTTTTTTATAA-TTTT
* * * *
12048850 TAACTTTTTTTATATATTCTTT
1 AAATTTTTTTTTTATAAT-TTT
12048872 AAAATTTTTATTTTTATAATTTT
1 -AAATTTTT-TTTTTATAATTTT
12048895 AAAT
1 AAAT
12048899 ATATATTTTG
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
21 1 0.03
22 19 0.51
23 9 0.24
24 8 0.22
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (21 bp):
AAATTTTTTTTTTATAATTTT
Found at i:12066797 original size:49 final size:49
Alignment explanation
Indices: 12066738--12066885 Score: 260
Period size: 49 Copynumber: 3.0 Consensus size: 49
12066728 TCTCTTTAGG
*
12066738 TTAGTAAATGAATCTAGCATTTGATTGGCGATGTTTTGTAAATGTATGA
1 TTAGTAAATGAATCTAGCAGTTGATTGGCGATGTTTTGTAAATGTATGA
*
12066787 TTCGTAAATGAATCTAGCAGTTGATTGGCGATGTTTTGTAAATGTATGA
1 TTAGTAAATGAATCTAGCAGTTGATTGGCGATGTTTTGTAAATGTATGA
**
12066836 TTAGTAAATGAATCTAGCAGTTGATTGGAAATGTTTTGTAAATGTATGA
1 TTAGTAAATGAATCTAGCAGTTGATTGGCGATGTTTTGTAAATGTATGA
12066885 T
1 T
12066886 CCTTTGAACT
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 94 1.00
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (49 bp):
TTAGTAAATGAATCTAGCAGTTGATTGGCGATGTTTTGTAAATGTATGA
Found at i:12074189 original size:25 final size:26
Alignment explanation
Indices: 12074161--12074209 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
12074151 ACAAATTTTC
*
12074161 TCAAAATTTTATC-GGGGTAAAATCA
1 TCAAAATTTTATCAAGGGTAAAATCA
12074186 TCAAAATTTTATCAAGGGTAAAAT
1 TCAAAATTTTATCAAGGGTAAAAT
12074210 TGAGATGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTATCAAGGGTAAAATCA
Found at i:12075803 original size:15 final size:13
Alignment explanation
Indices: 12075772--12075811 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
12075762 GTTTATTTGG
12075772 TTTTTATTTTGTA
1 TTTTTATTTTGTA
12075785 TTTTTATTGTTG-A
1 TTTTTATT-TTGTA
12075798 TATTTTATTTTGTA
1 T-TTTTATTTTGTA
12075812 ACAAAACGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.72
Consensus pattern (13 bp):
TTTTTATTTTGTA
Found at i:12083293 original size:43 final size:43
Alignment explanation
Indices: 12083246--12083344 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
12083236 GTTTTACATG
** * *
12083246 GAAATCTCGTATCGATGCCAATAGCCTAGCTATGGTCTTACAC
1 GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTAAAC
* *
12083289 GAAATATCAAATCGATGCCAGTAGCCCAGCTATGGTCTTAAAC
1 GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTAAAC
12083332 GAAATCTCAAATC
1 GAAATCTCAAATC
12083345 AATATTGGAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (43 bp):
GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTAAAC
Found at i:12092910 original size:27 final size:27
Alignment explanation
Indices: 12092870--12092930 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
12092860 CCTGCTAAAC
*
12092870 ACAGTGAATGGTGAACGACAACGAATG
1 ACAGTGAATGGTGAACGACAACGAACG
* *
12092897 ATAGTGAATGGTGAATGACAACGAACG
1 ACAGTGAATGGTGAACGACAACGAACG
12092924 ACAGTGA
1 ACAGTGA
12092931 TATTTTACGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.41, C:0.13, G:0.30, T:0.16
Consensus pattern (27 bp):
ACAGTGAATGGTGAACGACAACGAACG
Found at i:12093013 original size:17 final size:16
Alignment explanation
Indices: 12092991--12093032 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
12092981 ATCGCTAAGG
12092991 AAAAAGAAAAAGGAAAA
1 AAAAAGAAAAAGG-AAA
*
12093008 AAAAAGTAAAAGGAAA
1 AAAAAGAAAAAGGAAA
*
12093024 GAAAAGAAA
1 AAAAAGAAA
12093033 GGAAAATGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (16 bp):
AAAAAGAAAAAGGAAA
Found at i:12093057 original size:20 final size:18
Alignment explanation
Indices: 12093006--12093058 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 18
12092996 GAAAAAGGAA
*
12093006 AAAAAAAGTAAAAGGAAAG
1 AAAAAAAG-AAAAGAAAAG
12093025 AAAAGAAAGGAAAATGAAAATG
1 AAAA-AAA-GAAAA-GAAAA-G
12093047 AAAAAAAGAAAA
1 AAAAAAAGAAAA
12093059 AGAGGTACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 4 0.14
20 12 0.41
21 8 0.28
22 5 0.17
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (18 bp):
AAAAAAAGAAAAGAAAAG
Found at i:12094164 original size:34 final size:35
Alignment explanation
Indices: 12094109--12094175 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
12094099 CAAACACTAG
*
12094109 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
12094144 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
12094176 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:12094650 original size:31 final size:31
Alignment explanation
Indices: 12094610--12094696 Score: 92
Period size: 30 Copynumber: 2.9 Consensus size: 31
12094600 ATTGGACTTG
*
12094610 AATTT-TGAAATCTAAAAAGTAAAAGAACTA
1 AATTTCTGAAATCTAAAAAGTATAAGAACTA
** *
12094640 AATTTCTGAAA-AAAAAAAGTATATGAACTA
1 AATTTCTGAAATCTAAAAAGTATAAGAACTA
12094670 AA-TTCT-AAATCTGTAAAAAGTATAAGA
1 AATTTCTGAAATC--TAAAAAGTATAAGA
12094697 GGCTTTGACA
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
28 3 0.07
29 4 0.09
30 22 0.48
31 17 0.37
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (31 bp):
AATTTCTGAAATCTAAAAAGTATAAGAACTA
Found at i:12097882 original size:32 final size:31
Alignment explanation
Indices: 12097823--12097882 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
12097813 TGTCCAAATC
*
12097823 AAATAAATTATTTAAAAATTATAAAAATAAA
1 AAATAAATTATTTAAAAATTAGAAAAATAAA
12097854 AAATAAATTTATTTAAAAA-TAGAGAAAAT
1 AAATAAA-TTATTTAAAAATTAGA-AAAAT
12097883 TGGTTCAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 10 0.38
32 16 0.62
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (31 bp):
AAATAAATTATTTAAAAATTAGAAAAATAAA
Found at i:12100900 original size:9 final size:9
Alignment explanation
Indices: 12100888--12100912 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
12100878 TAAAATTATT
12100888 ATTTTAAAC
1 ATTTTAAAC
12100897 ATTTTAAAC
1 ATTTTAAAC
12100906 ATTTTAA
1 ATTTTAA
12100913 TTTTTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (9 bp):
ATTTTAAAC
Found at i:12102411 original size:20 final size:20
Alignment explanation
Indices: 12102368--12102413 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
12102358 CTGATAAAAT
* *
12102368 CGATACCAAAATAAAATTAT
1 CGATACCAAAATAAAAGTAC
12102388 CGATACC-AAATAAAAGGTAC
1 CGATACCAAAATAAAA-GTAC
12102408 CGATAC
1 CGATAC
12102414 TTAATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.50, C:0.20, G:0.11, T:0.20
Consensus pattern (20 bp):
CGATACCAAAATAAAAGTAC
Found at i:12103004 original size:31 final size:33
Alignment explanation
Indices: 12102968--12103030 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
12102958 TGTAATTTTC
12102968 ATTTCAATG-TTT-AACTATCTTATTTTCTCTA
1 ATTTCAATGTTTTCAACTATCTTATTTTCTCTA
* * *
12102999 ATTTCAGTGTTTTCAATTATTTTATTTTCTCT
1 ATTTCAATGTTTTCAACTATCTTATTTTCTCT
12103031 CCATTCAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 8 0.30
32 3 0.11
33 16 0.59
ACGTcount: A:0.22, C:0.14, G:0.05, T:0.59
Consensus pattern (33 bp):
ATTTCAATGTTTTCAACTATCTTATTTTCTCTA
Found at i:12103182 original size:124 final size:125
Alignment explanation
Indices: 12103030--12103280 Score: 477
Period size: 124 Copynumber: 2.0 Consensus size: 125
12103020 TTATTTTCTC
12103030 TCCATTCAATTAATCAACTTTAAATTTATTTTATTAACTTCCTCTTCTCATATTTTTAGTAAAAT
1 TCCATTCAATT-ATCAACTTTAAATTTATTTTATTAACTTCCTCTTCTCATATTTTTAGTAAAAT
12103095 TTTCTCCATTAAAATGGATATCACAGTTTCTAATATTTAACTATTTCCTTTTCTTTTTTCA
65 TTTCTCCATTAAAATGGATATCACAGTTTCTAATATTTAACTATTTCCTTTTCTTTTTTCA
12103156 TCCATTCAATT-TCAACTTTAAATTTATTTTATTAACTTCCTCTTCTCATATTTTTAGTAAAATT
1 TCCATTCAATTATCAACTTTAAATTTATTTTATTAACTTCCTCTTCTCATATTTTTAGTAAAATT
*
12103220 TTCTCCATTAAAATGGATATCACAGTTTTTAATATTTAACTATTTCCTTTTCTTTTTTCA
66 TTCTCCATTAAAATGGATATCACAGTTTCTAATATTTAACTATTTCCTTTTCTTTTTTCA
12103280 T
1 T
12103281 AATATATATA
Statistics
Matches: 124, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
124 113 0.91
126 11 0.09
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (125 bp):
TCCATTCAATTATCAACTTTAAATTTATTTTATTAACTTCCTCTTCTCATATTTTTAGTAAAATT
TTCTCCATTAAAATGGATATCACAGTTTCTAATATTTAACTATTTCCTTTTCTTTTTTCA
Found at i:12103287 original size:2 final size:2
Alignment explanation
Indices: 12103282--12103309 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
12103272 TTTTTTCATA
12103282 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12103310 GGGAATTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12116677 original size:72 final size:72
Alignment explanation
Indices: 12116594--12116736 Score: 241
Period size: 72 Copynumber: 2.0 Consensus size: 72
12116584 TCTCAGATTT
** * *
12116594 AAAAAAGGGATCATGTCCAGTAAGTTAGGACACGGTCTTTTCTTAATTCCCGAGATCGTTTAAAA
1 AAAAAAGGGATCATACCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
12116659 CTTGAGA
66 CTTGAGA
*
12116666 AAAAAATGGATCATACCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
1 AAAAAAGGGATCATACCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
12116731 CTTGAG
66 CTTGAG
12116737 TTTGAAAAGA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (72 bp):
AAAAAAGGGATCATACCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
CTTGAGA
Found at i:12119292 original size:26 final size:26
Alignment explanation
Indices: 12119258--12119312 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
12119248 CACAACAAAG
*
12119258 AACAAATCACGAAAT-AATCGATTAAC
1 AACAAATCACAAAATAAAT-GATTAAC
*
12119284 AACAGATCACAAAATAAATGATTAAC
1 AACAAATCACAAAATAAATGATTAAC
12119310 AAC
1 AAC
12119313 CAAGAAGCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.56, C:0.18, G:0.07, T:0.18
Consensus pattern (26 bp):
AACAAATCACAAAATAAATGATTAAC
Found at i:12121870 original size:50 final size:49
Alignment explanation
Indices: 12121811--12121993 Score: 177
Period size: 50 Copynumber: 3.7 Consensus size: 49
12121801 GATGGTCACG
* * **
12121811 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAGGTTGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGATTGGTT-CA
* * * * * *
12121861 TGTGTAGTACTATGTGCAGGCTACTATGCGCACCGGAAAGCTTCGATCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGATTGGTTCA
** * * * *
12121910 TGTGTGTAGTACTATGTGCAGGCTACTACGTAAACCAGAAAGTTTGATCACA
1 --TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGATTGGT-TCA
*
12121962 TGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTA
12121994 TCGAATGATA
Statistics
Matches: 107, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
49 2 0.02
50 66 0.62
51 37 0.35
52 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGATTGGTTCA
Found at i:12121927 original size:51 final size:50
Alignment explanation
Indices: 12121859--12121989 Score: 172
Period size: 51 Copynumber: 2.6 Consensus size: 50
12121849 TGAAAGGTTG
* ** *
12121859 CATGTGTAGTACTATGTGCAGGCTACTATGCGCACCGGAAAGCTTCGATCA
1 CATGTGTAGTACTATGTGCAGGCTACTACGCAAACCAGAAAG-TTCGATCA
** * *
12121910 TGTGTGTAGTACTATGTGCAGGCTACTACGTAAACCAGAAAGTTTGATCA
1 CATGTGTAGTACTATGTGCAGGCTACTACGCAAACCAGAAAGTTCGATCA
*
12121960 CATGTGTAGTACTATGTGAAGGCTACTACG
1 CATGTGTAGTACTATGTGCAGGCTACTACG
12121990 TGTATCGAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
50 34 0.49
51 35 0.51
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (50 bp):
CATGTGTAGTACTATGTGCAGGCTACTACGCAAACCAGAAAGTTCGATCA
Found at i:12141769 original size:20 final size:19
Alignment explanation
Indices: 12141734--12141773 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
12141724 TTTCAAAAAA
12141734 ATTTATTATATATTTATAT
1 ATTTATTATATATTTATAT
*
12141753 ATTTATTAATTTATTTATAT
1 ATTTATT-ATATATTTATAT
12141773 A
1 A
12141774 AATAAAGGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTATTATATATTTATAT
Found at i:12141920 original size:5 final size:5
Alignment explanation
Indices: 12141904--12141933 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
12141894 AAAGATGAAT
12141904 TAAAA GTAAAA TAAAA TAAAA TAAAA TAAA
1 TAAAA -TAAAA TAAAA TAAAA TAAAA TAAA
12141934 GCTTGAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:12148108 original size:17 final size:18
Alignment explanation
Indices: 12148086--12148119 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
12148076 GCAAATGAAT
12148086 TTAAAA-TTAAAAAATAA
1 TTAAAATTTAAAAAATAA
12148103 TTAAAATTTAAAAAATA
1 TTAAAATTTAAAAAATA
12148120 TTTAGATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TTAAAATTTAAAAAATAA
Found at i:12148180 original size:10 final size:9
Alignment explanation
Indices: 12148145--12148181 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
12148135 GGGTTTACCC
12148145 ACAATTAAA
1 ACAATTAAA
12148154 ACAATTAAA
1 ACAATTAAA
*
12148163 AAAATTAAA
1 ACAATTAAA
12148172 ACAAGTTAAA
1 ACAA-TTAAA
12148182 CGCTAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 20 0.80
10 5 0.20
ACGTcount: A:0.68, C:0.08, G:0.03, T:0.22
Consensus pattern (9 bp):
ACAATTAAA
Found at i:12150461 original size:6 final size:6
Alignment explanation
Indices: 12150450--12150476 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
12150440 GTAAATGTGA
12150450 TGAGGG TGAGGG TGAGGG TGAGGG TGA
1 TGAGGG TGAGGG TGAGGG TGAGGG TGA
12150477 AGAAGAGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.63, T:0.19
Consensus pattern (6 bp):
TGAGGG
Found at i:12150734 original size:27 final size:27
Alignment explanation
Indices: 12150704--12150758 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
12150694 ACAATACTTA
*
12150704 ATGAGACTGAAAGTGAAAGCTTTGGAG
1 ATGAGACTGAAAGTGAAAACTTTGGAG
12150731 ATGAGACTGAAAGTGAAAACTTTGGAG
1 ATGAGACTGAAAGTGAAAACTTTGGAG
12150758 A
1 A
12150759 GAAGTTTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.31, T:0.22
Consensus pattern (27 bp):
ATGAGACTGAAAGTGAAAACTTTGGAG
Found at i:12153062 original size:160 final size:157
Alignment explanation
Indices: 12152744--12153119 Score: 443
Period size: 160 Copynumber: 2.4 Consensus size: 157
12152734 ATGGGAACTT
* * *
12152744 AGGTATATTGTAAACACTTTTTAATTGTTAATTCCAAAATATTAAAATCTAATTTGGGTTCTGAT
1 AGGTATATCGTAAACACTTTTTAA-TGTTAATTCCAAAATATTTAAATCTAATTTGGGTTCTAAT
* * * *
12152809 TTTGTTGCTCTTAGTCTGGTACAAGTACGAGAACTAAAAGCCCAAAAAATAACAACATAATACCT
65 TTTGTTGCTCTTAGTCTGGTACAAGTACGAGAACTAAAAGCCAAAAAAAGAACAACAGAACACCT
* *
12152874 CACATTCAGCTTAATACAACTGGATCAC
130 CACATTCAGCTTAACACAACTAGATCAC
* * ** *
12152902 AGGTATATCGTATACACTATTTTAATGTAAATTAAAAAAATATTTTAATCTAATTTAGGGTTCTA
1 AGGTATATCGTAAACACT-TTTTAATGTTAATT-CCAAAATATTTAAATCTAATTT-GGGTTCTA
* ** * *
12152967 ATGTTT-TTGGTCTTAGTCTGGTATGAGTAC-ACGAACTAGAAGCCAAAAAAAGAACAATAGAAC
63 AT-TTTGTTGCTCTTAGTCTGGTACAAGTACGA-GAACTAAAAGCCAAAAAAAGAACAACAGAAC
* *
12153030 ACCAT-GCATTTAGCTTAACACAACTAGATCAC
126 ACC-TCACATTCAGCTTAACACAACTAGATCAC
** *
12153062 AAATATATCGTAAACACTTTTTTAATGTTAATTCCAAATTATTTAAATCTAATTTGGG
1 AGGTATATCGTAAACAC-TTTTTAATGTTAATTCCAAAATATTTAAATCTAATTTGGG
12153120 GTTGCCAAAA
Statistics
Matches: 182, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
158 26 0.14
159 43 0.24
160 108 0.59
161 5 0.03
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (157 bp):
AGGTATATCGTAAACACTTTTTAATGTTAATTCCAAAATATTTAAATCTAATTTGGGTTCTAATT
TTGTTGCTCTTAGTCTGGTACAAGTACGAGAACTAAAAGCCAAAAAAAGAACAACAGAACACCTC
ACATTCAGCTTAACACAACTAGATCAC
Found at i:12153341 original size:79 final size:82
Alignment explanation
Indices: 12153207--12153406 Score: 334
Period size: 79 Copynumber: 2.5 Consensus size: 82
12153197 TTGAGATGGT
*
12153207 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTGGTTAACATCTTACTGCTATA
1 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTGGCTAACATCTTACTGCTATA
12153272 GGATAATTTTGTTAGCA
66 GGATAATTTTGTTAGCA
*
12153289 TAACATATTTTG-TT-TTTTTT-AAATGATTTGTTTAAATGGTTGGCTAACATCTTACTGCTATA
1 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTGGCTAACATCTTACTGCTATA
* *
12153351 GGATCATTTTGTTAGTA
66 GGATAATTTTGTTAGCA
*
12153368 TAACATATTTTGTTTGTTTTTTGAAATGAATTGTTGAAA
1 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAA
12153407 GACGTATATC
Statistics
Matches: 109, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
79 67 0.61
80 8 0.07
81 8 0.07
82 26 0.24
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.49
Consensus pattern (82 bp):
TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTGGCTAACATCTTACTGCTATA
GGATAATTTTGTTAGCA
Found at i:12154070 original size:20 final size:20
Alignment explanation
Indices: 12154045--12154089 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
12154035 AAAAATAGTT
12154045 CATTAATTAAAAGTCCAATC
1 CATTAATTAAAAGTCCAATC
*
12154065 CATTAATTAAAAGTCCAATT
1 CATTAATTAAAAGTCCAATC
12154085 CATTA
1 CATTA
12154090 CAAGTCCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.44, C:0.18, G:0.04, T:0.33
Consensus pattern (20 bp):
CATTAATTAAAAGTCCAATC
Found at i:12158036 original size:18 final size:18
Alignment explanation
Indices: 12158003--12158041 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
12157993 GGGTTTTGAT
*
12158003 TTTTTTAATTTTAATT-A
1 TTTTTTAATTTAAATTCA
12158020 TTTTTTAAGTTTAAATTCA
1 TTTTTTAA-TTTAAATTCA
12158039 TTT
1 TTT
12158042 GCTAACGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 7 0.37
19 4 0.21
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTTTTAATTTAAATTCA
Found at i:12160762 original size:47 final size:46
Alignment explanation
Indices: 12160621--12160767 Score: 176
Period size: 46 Copynumber: 3.2 Consensus size: 46
12160611 TTTAAATAAT
12160621 TTTATTAATAAAATAATAAATTTAATTCTTAAAATTTACACATTTA
1 TTTATTAATAAAATAATAAATTTAATTCTTAAAATTTACACATTTA
* * **
12160667 TTTATT-ATAATA-AATAAATGTGTAAATT-TTAAGAA-TTAAATTTATTA
1 TTTATTAATAAAATAATAAAT-T-T-AATTCTTAA-AATTTACACAT-TTA
12160714 TTTTATTAATAAAATAATAAATTTAATTCTTAAAATTTACACATTTA
1 -TTTATTAATAAAATAATAAATTTAATTCTTAAAATTTACACATTTA
12160761 TTTATTA
1 TTTATTA
12160768 TAATAAATTA
Statistics
Matches: 83, Mismatches: 8, Indels: 20
0.75 0.07 0.18
Matches are distributed among these distances:
44 7 0.08
45 6 0.07
46 23 0.28
47 18 0.22
48 16 0.19
49 6 0.07
50 7 0.08
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (46 bp):
TTTATTAATAAAATAATAAATTTAATTCTTAAAATTTACACATTTA
Found at i:12166753 original size:140 final size:140
Alignment explanation
Indices: 12166594--12166893 Score: 411
Period size: 140 Copynumber: 2.1 Consensus size: 140
12166584 TTTTTACATG
12166594 AAAATAAATATTAAAAAATATAATATATTAAATACACTAAAAATATTAAAATAAATATTTCTCAA
1 AAAAT-AATATT-AAAAATATAATATATTAAATACACTAAAAATATTAAAATAAATATTTCTCAA
* **
12166659 CAAATTGAAAATACATTAAAAAATTTTGATATTTAAATAACATTAATATAGTTGTGACTTAGCAA
64 CAAATTGAAAATACATTAAAAAATTTTGATAATTAAATAACATTAATATAGTTGCAACTTAGCAA
*
12166724 GCAAATGCCTCT
129 ACAAATGCCTCT
* * *
12166736 AAAATAATATTAAAAATATAATATATTAAATACACTAAAAATATTAAAATAAATATTTTTTAATA
1 AAAATAATATTAAAAATATAATATATTAAATACACTAAAAATATTAAAATAAATATTTCTCAACA
* * * ** * * * *
12166801 AATTTAAAATATATTAACAGGTTTTTATAATTAAATAATATTAATATAGTTGCAACTTAGTAAAT
66 AATTGAAAATACATTAAAAAATTTTGATAATTAAATAACATTAATATAGTTGCAACTTAGCAAAC
*
12166866 AAATGTCTCT
131 AAATGCCTCT
* *
12166876 AAAATAGTAATAAAAATA
1 AAAATAATATTAAAAATA
12166894 ACAATAAAAT
Statistics
Matches: 139, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
140 128 0.92
141 6 0.04
142 5 0.04
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.35
Consensus pattern (140 bp):
AAAATAATATTAAAAATATAATATATTAAATACACTAAAAATATTAAAATAAATATTTCTCAACA
AATTGAAAATACATTAAAAAATTTTGATAATTAAATAACATTAATATAGTTGCAACTTAGCAAAC
AAATGCCTCT
Found at i:12168498 original size:15 final size:15
Alignment explanation
Indices: 12168478--12168512 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
12168468 TATGTATGCC
12168478 ACAATAATAAATACA
1 ACAATAATAAATACA
12168493 ACAATAATAAATACA
1 ACAATAATAAATACA
12168508 ACAAT
1 ACAAT
12168513 GGCATAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (15 bp):
ACAATAATAAATACA
Found at i:12170424 original size:89 final size:86
Alignment explanation
Indices: 12170319--12170962 Score: 397
Period size: 84 Copynumber: 7.4 Consensus size: 86
12170309 GATTATCGGC
*
12170319 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCGGCCTCAATGCAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCAT-TTCAGTCTGCCTC-ATGCAA
*
12170384 CTTTAGGAG-GATAAGACTTGCT
64 CTTCAGGAGAGATAAGACTTGCT
** * * * * *
12170406 TACTTGGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAG--A-TGC-GATCTGCTCTC-TGT
1 T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATTTCAG-TCTGC-CTCATGC
** *
12170466 AACTTCA-GAGAGATAAGATCCAAGGT
62 AACTTCAGGAGAGATAAGA--CTTGCT
* *
12170492 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCGGCCTCAATGCAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCAT-TTCAGTCTGCCTC-ATGCAA
*
12170557 CTTTAGGAG-GATAAGACTTGCT
64 CTTCAGGAGAGATAAGACTTGCT
* * * * * * * *
12170579 TACTTAGTCTGCTCCAGTGTAACTTTAGGGAGATAAGACTAG--A-TGC-GATCTGCTCTC-TGT
1 T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATTTCAG-TCTGC-CTCATGC
** *
12170639 AACTTCA-GAGAGATAAGATCCAAGGT
62 AACTTCAGGAGAGATAAGA--CTTGCT
* * * *
12170665 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGC-TTT-AATCTG-CTCCACTGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-T-GCCATTTCAGTCTGCCT-CA-TGC
* *
12170727 AACTTCAGG-GAGATAGGATTATCGGC-
62 AACTTCAGGAGAGATAAGACT-T--GCT
* *
12170753 TTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTAC-A
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCAT-TTCAGTCTGCCTCA-TGCAA
12170817 CTTCAGGAG-GATAAGACTTGCT
64 CTTCAGGAGAGATAAGACTTGCT
* * * * * * * *
12170839 TACTTAGTCTGCTCCAGTGTAACTTTAGGGAGATAAGACTAG--A-TGC-GATCTGCTCTC-TGT
1 T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATTTCAG-TCTGC-CTCATGC
** *
12170899 AACTTCA-GAGAGATAAGATCCAAGGT
62 AACTTCAGGAGAGATAAGA--CTTGCT
* *
12170925 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
12170963 ATTGGCCACT
Statistics
Matches: 425, Mismatches: 83, Indels: 101
0.70 0.14 0.17
Matches are distributed among these distances:
83 11 0.03
84 145 0.34
85 19 0.04
86 25 0.06
87 17 0.04
88 108 0.25
89 95 0.22
90 5 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (86 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATTTCAGTCTGCCTCATGCAACT
TCAGGAGAGATAAGACTTGCT
Found at i:12170441 original size:44 final size:45
Alignment explanation
Indices: 12170324--12170878 Score: 178
Period size: 44 Copynumber: 12.7 Consensus size: 45
12170314 TCGGCTTTAA
* *
12170324 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATCTTCAG
* * * * *
12170369 TCGGC-CTCAATGCAACTT-TAGGAGGATAAGACTTG-CTTACTT-GG
1 TCTGCTC-CACTGCAACTTCAAGGA-GATAAGACTTGCCAT-CTTCAG
* *
12170413 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTAG--A--TGC-G
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATCTTCAG
* * * *
12170453 ATCTGCT-CTCTGTAACTTC-AGAGAGATAAGA--T-CCAAGGT-TTTAA
1 -TCTGCTCCACTGCAACTTCAAG-GAGATAAGACTTGCC-A--TCTTCAG
* * *
12170497 TCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATCTTCAG
* * * *
12170542 TCGGC-CTCAATGCAACTT-TAGGAGGATAAGACTTG-CTTACTT-AG
1 TCTGCTC-CACTGCAACTTCAAGGA-GATAAGACTTGCCAT-CTTCAG
* * * * * *
12170586 TCTGCTCCAGTGTAACTTTAGGGAGATAAGACTAG--A--TGC-G
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATCTTCAG
* * * *
12170626 ATCTGCT-CTCTGTAACTTC-AGAGAGATAAGA--T-CCAAGGT-TTTAA
1 -TCTGCTCCACTGCAACTTCAAG-GAGATAAGACTTGCC-A--TCTTCAG
* * * ** ** * *
12170670 TCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTATCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATCTTCAG
* * ** ** * *
12170714 TCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTATCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATCTTCAG
*
12170758 TCTGCTCCACTGCAACTTC-AGGAAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAAGG-AGATAAGACTTGCCATCTTCAG
* *
12170803 TCTGC-CTCACTAC-ACTTC-AGGAGGATAAGACTTG-CTTACTT-AG
1 TCTGCTC-CACTGCAACTTCAAGGA-GATAAGACTTGCCAT-CTTCAG
* * * *
12170846 TCTGCTCCAGTGTAACTTTAGGGAGATAAGACT
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACT
12170879 AGATGCGATC
Statistics
Matches: 389, Mismatches: 72, Indels: 99
0.69 0.13 0.18
Matches are distributed among these distances:
39 3 0.01
40 43 0.11
41 12 0.03
43 27 0.07
44 210 0.54
45 89 0.23
46 3 0.01
47 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATCTTCAG
Found at i:12170498 original size:173 final size:173
Alignment explanation
Indices: 12170319--12170702 Score: 705
Period size: 173 Copynumber: 2.2 Consensus size: 173
12170309 GATTATCGGC
*
12170319 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCGGCCTCAATGCAA
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCGGCCTCAATGCAA
*
12170384 CTTTAGGAGGATAAGACTTGCTTACTTGGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGA
66 CTTTAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGA
12170449 TGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCCAAGGT
131 TGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCCAAGGT
12170492 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCGGCCTCAATGCAA
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCGGCCTCAATGCAA
* * * *
12170557 CTTTAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCAGTGTAACTTTAGGGAGATAAGACTAGA
66 CTTTAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGA
12170622 TGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCCAAGGT
131 TGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCCAAGGT
*
12170665 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATT
12170703 ATCGGCTTTA
Statistics
Matches: 204, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
173 204 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (173 bp):
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCGGCCTCAATGCAA
CTTTAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGA
TGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCCAAGGT
Found at i:12170605 original size:217 final size:216
Alignment explanation
Indices: 12170195--12170964 Score: 877
Period size: 217 Copynumber: 3.6 Consensus size: 216
12170185 GCTTGATTTA
* * * *
12170195 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATTTGCTCTCTACAACTTCATAGA
1 GTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGA
* *
12170260 GATAAGATCCAAGATTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTTAAT
66 GATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAAT
* *
12170325 CTGCTCCACTGCAACTTCAGG-GAGATAAGATTTGCCATCTTCAGTCGGCCTCAATGCAACTTTA
131 CTGCTCCACTGCAACTTCAGGAG-GATAAGATTTGCCATCTTCAGTCTGCCTC-ATGTAACTTTA
12170389 GGAGGATAAGACTTGCTTACTTG
194 GGAGGATAAGACTTGCTTACTTG
*
12170412 GTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCTCTCTGTAACTTCAGAGA
1 GTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGA
* *
12170477 GATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATT-T-GCCATCTTC
66 GATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGC-T-TT-
* * * * * *
12170540 AGTCGGC-CTCAATGCAACTTTAGGAGGATAAGACTTG-CTTACTT-AGTCTG-CTCCAGTGTAA
128 AATCTGCTC-CACTGCAACTTCAGGAGGATAAGATTTGCCAT-CTTCAGTCTGCCT-CA-TGTAA
* * *
12170601 CTTTAGG-GAGATAAGACTAG-ATGC--G
189 CTTTAGGAG-GATAAGACTTGCTTACTTG
* * * * * *** * *
12170626 ATCTGCT-CTCTGTAACTTC-AGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTC
1 GTCTGCTCCACTGCAACTTCAAG-GAGATAAGA--CTA-GATGCGATCTGCT-CTCTGCAACTTC
* * * * * *
12170689 AGGGAGATAGGAT-TATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGC
61 AGAGAGATAAGATCCA-AGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGC
* *
12170753 TTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCA-CTACA
125 TTTAATCTGCTCCACTGCAACTTCAGGAGGATAAGATTTGCCATCTTCAGTCTGCCTCATGTA-A
* *
12170817 CTTCAGGAGGATAAGACTTGCTTACTTA
189 CTTTAGGAGGATAAGACTTGCTTACTTG
* * * * *
12170845 GTCTGCTCCAGTGTAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTCTGTAACTTCAGAGA
1 GTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGA
12170910 GATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAT
66 GATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAT
12170965 TGGCCACTGA
Statistics
Matches: 453, Mismatches: 71, Indels: 59
0.78 0.12 0.10
Matches are distributed among these distances:
212 2 0.00
213 19 0.04
214 7 0.02
215 6 0.01
216 128 0.28
217 226 0.50
218 37 0.08
219 9 0.02
220 18 0.04
221 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (216 bp):
GTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGA
GATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAAT
CTGCTCCACTGCAACTTCAGGAGGATAAGATTTGCCATCTTCAGTCTGCCTCATGTAACTTTAGG
AGGATAAGACTTGCTTACTTG
Found at i:12170870 original size:260 final size:261
Alignment explanation
Indices: 12170492--12170964 Score: 885
Period size: 260 Copynumber: 1.8 Consensus size: 261
12170482 GATCCAAGGT
* *
12170492 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCGGCCTCAATGCAA
1 TTTAATCCGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCGGCCTCAATACAA
*
12170557 CTTTAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCAGTGTAACTTTAGGGAGATAAGACTAGA
66 CTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCAGTGTAACTTTAGGGAGATAAGACTAGA
12170622 TGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACT
131 TGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACT
12170687 TCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGG
196 TCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGG
12170752 C
261 C
* * *
12170753 TTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTAC-A
1 TTTAATCCGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCGGCCTCAATACAA
12170817 CTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCAGTGTAACTTTAGGGAGATAAGACTAGA
66 CTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCAGTGTAACTTTAGGGAGATAAGACTAGA
12170882 TGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACT
131 TGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACT
12170947 TCAGGGAGATAGGATTAT
196 TCAGGGAGATAGGATTAT
12170965 TGGCCACTGA
Statistics
Matches: 206, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
260 148 0.72
261 58 0.28
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (261 bp):
TTTAATCCGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCGGCCTCAATACAA
CTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCAGTGTAACTTTAGGGAGATAAGACTAGA
TGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACT
TCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGG
C
Found at i:12182318 original size:19 final size:19
Alignment explanation
Indices: 12182294--12182331 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
12182284 AACATTTTAT
12182294 TCTCTTCAAGATGAGTTAG
1 TCTCTTCAAGATGAGTTAG
*
12182313 TCTCTTCAAGATGCGTTAG
1 TCTCTTCAAGATGAGTTAG
12182332 GGCACAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (19 bp):
TCTCTTCAAGATGAGTTAG
Found at i:12182988 original size:50 final size:50
Alignment explanation
Indices: 12182927--12183051 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 50
12182917 AAGTCATATT
* * ** * *
12182927 CCAGATATGGTCTTACATTGGAGTTCTCATATCGGTGCCCATGCCATGTC
1 CCAGACATGGTCTTACATAGGACCTCTCATATCGGTGCCAACGCCATGTC
* * * * * *
12182977 CCAGACTTGGTCTTATAGAGGACCTCTTATCTTGGTGCCAACGCCATGTC
1 CCAGACATGGTCTTACATAGGACCTCTCATATCGGTGCCAACGCCATGTC
*
12183027 CCAGACATGGTCTTACATGGGACCT
1 CCAGACATGGTCTTACATAGGACCT
12183052 TTTTACCCAA
Statistics
Matches: 59, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
50 59 1.00
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (50 bp):
CCAGACATGGTCTTACATAGGACCTCTCATATCGGTGCCAACGCCATGTC
Found at i:12184900 original size:29 final size:31
Alignment explanation
Indices: 12184834--12184905 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 31
12184824 TTAACGGCTC
*
12184834 AGTGACTAAAATGTTACAATTCGAAAACAAA
1 AGTGACTAAAATGTAACAATTCGAAAACAAA
* * * *
12184865 AGAGACTAGAATGTAAC-ATT-TAAAACATA
1 AGTGACTAAAATGTAACAATTCGAAAACAAA
12184894 AGTGACTAAAAT
1 AGTGACTAAAAT
12184906 AAAATTTGAG
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
29 17 0.50
30 3 0.09
31 14 0.41
ACGTcount: A:0.51, C:0.11, G:0.14, T:0.24
Consensus pattern (31 bp):
AGTGACTAAAATGTAACAATTCGAAAACAAA
Found at i:12199744 original size:12 final size:12
Alignment explanation
Indices: 12199727--12199751 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12199717 CTCGTCATCT
12199727 TGTAGGAATTAA
1 TGTAGGAATTAA
12199739 TGTAGGAATTAA
1 TGTAGGAATTAA
12199751 T
1 T
12199752 TCATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (12 bp):
TGTAGGAATTAA
Found at i:12205394 original size:37 final size:37
Alignment explanation
Indices: 12205320--12205514 Score: 178
Period size: 37 Copynumber: 5.2 Consensus size: 37
12205310 TGATGTATCA
* * * *
12205320 TATACTGAAAGCACGCT-ATATCGAACCAAATCTTACCGT
1 TATACTGAAAG-AAGCTCA-ATCG-AGCAAATCGTACTGT
* * *
12205359 TATACTGAATGAAGCTCAATCGAGGAAATCGTACCGT
1 TATACTGAAAGAAGCTCAATCGAGCAAATCGTACTGT
** * *
12205396 TATACTGAAAGAAGCTCAATCGAAAAAATCTTACTAT
1 TATACTGAAAGAAGCTCAATCGAGCAAATCGTACTGT
* * *
12205433 TATACTGTATGAAGCTCAACCGAGCAAAT-GTTACTGT
1 TATACTGAAAGAAGCTCAATCGAGCAAATCG-TACTGT
*** *
12205470 TATACTGAAAGATTTTCAATCGAGCAAATCCTACTGT
1 TATACTGAAAGAAGCTCAATCGAGCAAATCGTACTGT
12205507 TATACTGA
1 TATACTGA
12205515 GTGTAACTTG
Statistics
Matches: 128, Mismatches: 25, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
37 109 0.85
38 8 0.06
39 11 0.09
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.28
Consensus pattern (37 bp):
TATACTGAAAGAAGCTCAATCGAGCAAATCGTACTGT
Found at i:12205445 original size:74 final size:74
Alignment explanation
Indices: 12205320--12205514 Score: 223
Period size: 74 Copynumber: 2.6 Consensus size: 74
12205310 TGATGTATCA
* * * *
12205320 TATACTGAAAGCACGCT-ATATCGAACCAAATCTTACCGTTATACTGAATGAAGCTCAATCGAGG
1 TATACTGAAAG-AAGCTCA-ATCGAA-CAAATCTTACTGTTATACTGAATGAAGCTCAACCGAGC
12205384 AAATCG-TACCGT
63 AAAT-GTTACCGT
* * *
12205396 TATACTGAAAGAAGCTCAATCGAAAAAATCTTACTATTATACTGTATGAAGCTCAACCGAGCAAA
1 TATACTGAAAGAAGCTCAATCGAACAAATCTTACTGTTATACTGAATGAAGCTCAACCGAGCAAA
*
12205461 TGTTACTGT
66 TGTTACCGT
*** * *
12205470 TATACTGAAAGATTTTCAATCGAGCAAATCCTACTGTTATACTGA
1 TATACTGAAAGAAGCTCAATCGAACAAATCTTACTGTTATACTGA
12205515 GTGTAACTTG
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
73 1 0.01
74 78 0.77
75 10 0.10
76 12 0.12
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.28
Consensus pattern (74 bp):
TATACTGAAAGAAGCTCAATCGAACAAATCTTACTGTTATACTGAATGAAGCTCAACCGAGCAAA
TGTTACCGT
Found at i:12207384 original size:20 final size:20
Alignment explanation
Indices: 12207359--12207417 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
12207349 AATTATTACA
12207359 TGTTTGCACATACGTGCCCT
1 TGTTTGCACATACGTGCCCT
* * *
12207379 TGTTTGTAC-TTCGGTACCCT
1 TGTTTGCACATAC-GTGCCCT
*
12207399 TGTTTGCACATATGTGCCC
1 TGTTTGCACATACGTGCCC
12207418 CTGAACACAT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
19 2 0.07
20 27 0.90
21 1 0.03
ACGTcount: A:0.14, C:0.27, G:0.20, T:0.39
Consensus pattern (20 bp):
TGTTTGCACATACGTGCCCT
Found at i:12211055 original size:14 final size:15
Alignment explanation
Indices: 12211036--12211067 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
12211026 GTGGTTATAG
12211036 TTAAAATA-ATAAAA
1 TTAAAATAGATAAAA
12211050 TTAAAATAGATAAAA
1 TTAAAATAGATAAAA
12211065 TTA
1 TTA
12211068 TGATGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
TTAAAATAGATAAAA
Found at i:12238357 original size:38 final size:38
Alignment explanation
Indices: 12238315--12238390 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
12238305 AGATGGGTGT
* *
12238315 AAGTGTTTGGAGGAGAAATTCAGAGCTATGGATAGTGC
1 AAGTGGTTGGAGGAGAAATTCAGAGCTATGGAGAGTGC
*
12238353 AAGTGGTTGGAGGAGAAATTTAGAGCTATGGAGAGTGC
1 AAGTGGTTGGAGGAGAAATTCAGAGCTATGGAGAGTGC
12238391 TAACTACCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.32, C:0.07, G:0.37, T:0.25
Consensus pattern (38 bp):
AAGTGGTTGGAGGAGAAATTCAGAGCTATGGAGAGTGC
Found at i:12251155 original size:13 final size:13
Alignment explanation
Indices: 12251118--12251156 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
12251108 TGCCCAAAGG
12251118 ATCAATCATGTTT
1 ATCAATCATGTTT
*
12251131 ATTAATATCATGTTT
1 A-TCA-ATCATGTTT
12251146 ATCAATCATGT
1 ATCAATCATGT
12251157 GTGTATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 8 0.36
14 4 0.18
15 10 0.45
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (13 bp):
ATCAATCATGTTT
Found at i:12254838 original size:44 final size:43
Alignment explanation
Indices: 12254775--12254909 Score: 137
Period size: 44 Copynumber: 3.1 Consensus size: 43
12254765 GTTACCATAG
* * *
12254775 CAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGGATGAAGCTA
1 CAAATCATATATCCCTAAAGTTGCAGTGGAGC-GGATGAAGCTA
* *
12254819 CAAATCATATATCGCTAAAGTTGCAGTGGATCGGATTGAAGCTA
1 CAAATCATATATCCCTAAAGTTGCAGTGGAGCGGA-TGAAGCTA
* * * * *
12254863 CAATTCCTATACCCCTGAAGTTGCAGTGG-GTTGGAATGAAGCTA
1 CAAATCATATATCCCTAAAGTTGCAGTGGAG-CGG-ATGAAGCTA
12254907 CAA
1 CAA
12254910 CTACAAATCC
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
43 3 0.04
44 72 0.95
45 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (43 bp):
CAAATCATATATCCCTAAAGTTGCAGTGGAGCGGATGAAGCTA
Found at i:12255040 original size:188 final size:189
Alignment explanation
Indices: 12254723--12255072 Score: 515
Period size: 188 Copynumber: 1.9 Consensus size: 189
12254713 AATGAAACAG
* * *
12254723 TACAAATTCTATACCCCTGAAGTTGTAGTGGGTCGAATTAAAGTTACCATAGCAAATCTTATCTC
1 TACAAATCCTATACCCCTGAAGTTGTAGTGGGTCGAATCAAAGTTACCATAACAAATCTTATCTC
* * * * *
12254788 CCTAAAGTTGTAGTGGAGCAGGATGAAGCTACAAATCATATATCGCTAAAGTTGCAGTGGATCGG
66 CCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCATATATCCCTAAAGTTACAATGGATCGG
12254853 ATTGAAGCTACAATTCCTATA-CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAAC
131 ATTGAAGCTACAATTCCTATACCCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAAC
* ** * *
12254911 TACAAATCCTATACCCTTGAAGTTGTAGTGGGTCGGGTCGAA-TCTACCATAACGAATCTTATCT
1 TACAAATCCTATACCCCTGAAGTTGTAGTGGGTCGAATCAAAGT-TACCATAACAAATCTTATCT
* * * *
12254975 CCCTGAAGTTGCAGTGGAGTAAGATGAAGCTACAAATCCTATGTCCCTAAAGTTACAATGGATCG
65 CCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCATATATCCCTAAAGTTACAATGGATCG
*
12255040 GATTGAAGCTACAATTTCTATACCCCCTGAAGT
130 GATTGAAGCTACAATTCCTATACCCCCTGAAGT
12255073 GAAATGAATC
Statistics
Matches: 142, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
187 1 0.01
188 131 0.92
189 10 0.07
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (189 bp):
TACAAATCCTATACCCCTGAAGTTGTAGTGGGTCGAATCAAAGTTACCATAACAAATCTTATCTC
CCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCATATATCCCTAAAGTTACAATGGATCGG
ATTGAAGCTACAATTCCTATACCCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAAC
Found at i:12264098 original size:30 final size:30
Alignment explanation
Indices: 12264064--12264165 Score: 96
Period size: 30 Copynumber: 3.2 Consensus size: 30
12264054 AATTCTATTT
12264064 AATTGAGGCTTAATTGGTGTTAATAAATTC
1 AATTGAGGCTTAATTGGTGTTAATAAATTC
* * * * *
12264094 AATTGAAGGTGTATGAATATGTATGATATTTAATTC
1 AATTG-AGG-CT-T-AAT-TG-GTGTTAATAAATTC
*
12264130 AATTAAGGCTTAATTGGTGTTAATAAATTC
1 AATTGAGGCTTAATTGGTGTTAATAAATTC
12264160 AATTGA
1 AATTGA
12264166 AGGTGTTAAT
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
30 20 0.37
31 5 0.09
32 4 0.07
33 2 0.04
34 4 0.07
35 5 0.09
36 14 0.26
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (30 bp):
AATTGAGGCTTAATTGGTGTTAATAAATTC
Found at i:12267965 original size:21 final size:21
Alignment explanation
Indices: 12267940--12267994 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
12267930 ATCTTCAAGG
12267940 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
12267961 ATATGAAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
12267982 -T-TGCAATCTTAGA
1 ATATGCAATCTTAGA
12267995 AGATATGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 11 0.34
20 1 0.03
21 20 0.62
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:12268001 original size:22 final size:23
Alignment explanation
Indices: 12267973--12268017 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
12267963 ATGAAATCTT
12267973 AGATATGA-TTTGCAATCTTAGA
1 AGATATGATTTTGCAATCTTAGA
*
12267995 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTTTGCAATCTTAGA
12268018 GATTTACTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTTTGCAATCTTAGA
Found at i:12268020 original size:22 final size:22
Alignment explanation
Indices: 12267952--12268020 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
12267942 ATGCAATCTT
*
12267952 AGATATGATATATGAAATCTT--
1 AGATATGAT-TTTGAAATCTTAG
*
12267973 AGATATGA-TTTGCAATCTTAG
1 AGATATGATTTTGAAATCTTAG
*
12267994 AAGATATGATTTTGTAATCTTAG
1 -AGATATGATTTTGAAATCTTAG
12268017 AGAT
1 AGAT
12268021 TTACTTTATA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
19 9 0.22
21 8 0.20
22 12 0.29
23 12 0.29
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (22 bp):
AGATATGATTTTGAAATCTTAG
Found at i:12268265 original size:23 final size:23
Alignment explanation
Indices: 12268221--12268265 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
12268211 TCATATTTTG
* *
12268221 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
12268244 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
12268266 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:12270483 original size:44 final size:44
Alignment explanation
Indices: 12270413--12270542 Score: 165
Period size: 44 Copynumber: 3.0 Consensus size: 44
12270403 GCTTTATCTC
*
12270413 CCTGGTTAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTA-CCT
1 CCTGGTTAGCAGTGGAATATGTTGAAGATTGTGAA-TCCTATCCT
* * * *
12270456 CCATGGTTAGTAGTGGAATATGCTGAAGATGGTGAATCCTATCTT
1 CC-TGGTTAGCAGTGGAATATGTTGAAGATTGTGAATCCTATCCT
* *
12270501 CCTAGTCAGCAGTGGAATATGTTGAAGATTGTGAATCCTATC
1 CCTGGTTAGCAGTGGAATATGTTGAAGATTGTGAATCCTATC
12270543 GCCCGGAGCA
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
43 2 0.03
44 66 0.89
45 6 0.08
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (44 bp):
CCTGGTTAGCAGTGGAATATGTTGAAGATTGTGAATCCTATCCT
Found at i:12270555 original size:44 final size:44
Alignment explanation
Indices: 12270467--12270570 Score: 129
Period size: 44 Copynumber: 2.4 Consensus size: 44
12270457 CATGGTTAGT
* ** *
12270467 AGTGGAATATGCTGAAGATGGTGAATCCTATCTTCCTAGTCAGC
1 AGTGGAATATGTTGAAGATGGTGAATCCTATCGCCCGAGTCAGC
*
12270511 AGTGGAATATGTTGAAGATTGTGAATCCTATCGCCCGGAG-CAGC
1 AGTGGAATATGTTGAAGATGGTGAATCCTATCGCCC-GAGTCAGC
* *
12270555 AGTGGAGTAGGTTGAA
1 AGTGGAATATGTTGAA
12270571 AATTACAAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
44 50 0.96
45 2 0.04
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (44 bp):
AGTGGAATATGTTGAAGATGGTGAATCCTATCGCCCGAGTCAGC
Found at i:12270719 original size:44 final size:44
Alignment explanation
Indices: 12270671--12275899 Score: 1077
Period size: 44 Copynumber: 121.7 Consensus size: 44
12270661 CCACTAACCT
*
12270671 TATCTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12270715 TATCTCCCTAGTCAGTAGTGGAATAGGTTAAAGATTGTGAGTTC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* **
12270759 TATCTCTCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12270803 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA-ACT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * ** * * * *
12270847 TATCTCCCTAAG-AAGTAGTAGAGCAGATCGAAG-TCGGTGAA-TCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGAT-TGT-AAGTCC
* * * * * ****
12270891 TATCTTCCCAAGAT-AGTAG-GGAAGCAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
12270934 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12270979 TATCTCCCTGGTCAG-CGATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAG-TGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12271023 TATCTCCCTGAG-AAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * * ** ** ** * *
12271067 TATCTTCCTAAG-CAGTAGT-AAAGCAGATCAAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * * ***
12271111 TATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGACACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * *
12271154 TTATATCCCCGTTCAGTAGTGAAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12271199 TATCTCACTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12271243 TATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12271287 TATCTCCCTGGCCAGCAATGG-A-A---T-AAG--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12271321 TATCTCCTTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12271365 TATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * ** * * ** * *
12271409 TATCTCCCTAAG-AAGTAGTGGAGCAGATCGAAGACAGCGAA-TCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * ****
12271453 TATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
12271496 TTATCTCCCTGGTCGGTAGTAGAATAGGTTGAAGAGTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12271541 TATCTCCCTAGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12271575 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * *
12271619 TATCTCCCTGAG-CAGTAGTGGAGA-AGGTTGAAAATTACAAATCT
1 TATCTCCCTG-GTCAGTAGTGGA-ATAGGTTGAAGATTGTAAGTCC
* ** ** * ** ** * *
12271663 TATCTCCCTAAG-CAGTAGCAGAGCAGATTGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*** * * ****
12271707 TATCTTCACAAAGT-AGTAG-GGAAGTAGATTTAAGCCACT-AG-CC
1 TATC-TC-CCTGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
12271750 TTATCTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCT
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * **
12271795 TATCTCCATGGTCAGCAGTGGAATAGGTTGAAGATTGCGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*** * * * *
12271839 TATCTCCCTCACCAATAGTGAAATAGGTTTAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
12271883 TAGCTCCCTGAG-CAGCAGTGTAGTAGGTTAAAAATTACAG-AAGT--
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATT---GTAAGTCC
* * * * * * ** *
12271927 TATCTCCCTAAG-CAATAGTAGAGTAGATCGAAGACGGTGAA-TCA
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * ** * *
12271971 TATCATCCCAAGGT-AGTTG-GGAAGGAGATTTAAG-CCGCT-AGGCT
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTG-TAAGTCC
* * *
12272015 TATCTTCCTGGTCAGTAGCGGAATAGGTTGACGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12272059 TATCTCCCTAGTCAGCAGTGGAATAGGCTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * * *
12272103 TATATCCCTGAG-CAGCGGTGGAGTAGGTTGCAA-ATTAT-AGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTG-AAGATTGTAAG-TCC
* * * * * * ** ** * *
12272147 TATCCCCCTAAG-CAGTAGTAGAACAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * ****
12272191 TATCTTCCCAAGGT-AGTAG-GGAAGTAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
12272234 TTATCTTCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12272279 TATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** *
12272323 TATCTCCCTTGTCAACAGTGGAATAGGTTGAAGATTGTAAGTAC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12272367 TATCTCCCTGGTCAGCAATGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12272401 TATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12272445 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTACG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGA-T-TGTAAGTCC
* * * * * * *
12272489 TATGTCCTTGAG-CAGCAGTGGAGTAGGTT-AAAAAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** ** * * ** * *
12272533 TATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGACGGCGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * * ****
12272577 TACCTTCCTAAAGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATCTCCCT--GGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
12272620 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12272665 TATCTCCCTGGTCAGCAGT-GAA-A---T-ACG--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12272699 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12272743 TATCTCCCTGGTCAGCAGTGTAATAGATTGAAGATTTTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12272787 TATCTCCCTGAG-CAGCAGTGGAGTAGGATGAA-AAT-TACAGATCC
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * ** * * ** ** * *
12272831 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * ****
12272875 TATCTTTCCAAGGT-AGTAG-GGAAGCAGATAT-AAGCCACT-AG-CC
1 TATC--TCCCTGGTCAGTAGTGGAA-TAGGT-TGAAGATTGTAAGTCC
* *
12272918 TTATCTCCCTGGTCATTAGTGGAATAGGTTGAAGATTGTAAGTCG
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12272963 TATCTCCCTGGTCAGCAGTGGAATAGGTTGACGGTTGTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
**
12273007 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12273051 AATCTCCTTGGTCAGCAGTGGAATAGG-TG-A-A---T---T-C
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12273085 TATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGTA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * *
12273129 TATCTACCTGGTCAACAATAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * ** *
12273173 TATCTCCCTAAG-CAGCAGTAGAGTAGGTTGAA-A-ACTACAGATCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
*** ** * * ** * *
12273217 TATCTCTCAAAG-CAGTAGTGGAGCAGATCGAAGACGGCGAA-TCT
1 TATCTC-CCTGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * ****
12273261 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
12273304 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12273349 TATCTCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * * *
12273383 TTTTTCCCTTGTTAGTAGTGGAATAGGTTAAAGATTATGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12273427 TATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12273471 TATCTCCCTCGTCAATAGTGAAAGT-GGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAA-TAGGTTGAAGATTGT-AAGTCC
* * * * * * *
12273515 TAGCTCCTTGAG-CAGCAGTGTAGTAGGTTAAAAATTACAG-AAGT--
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATT---GTAAGTCC
* * * * * * ** *
12273559 TATCTGCCTAAG-CGGTAGTAGAATAGATCGAAGACGGTGAA-TCA
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
12273603 TATCAT-CCTAAGGT-AGTAG-GGAAGGAGATTTAAGA-CGCT-AGGCT
1 TATC-TCCCT--GGTCAGTAGTGGAA-TAGGTTGAAGATTG-TAAGTCC
** * *
12273647 TATCTTTCTGGTCAGTAGCGGAATAGGTTGACGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12273691 TATCTCCCTAGTCAGCAGTGGAATAGGCTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
12273735 TATATCCCTGAG-CAGCAGTGGAGTAGGTTGCAA-ATTAT-AGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTG-AAGATTGTAAG-TCC
* * * ** * * ** ** * *
12273779 TATCTCCTTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * ****
12273823 TATCTTCCCAAT-GT-AGTAG-GGAAGTAGATTTAAGCCACT-AG-CC
1 TATC-TCCC--TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
12273866 TTATCTCTCTGGTCAGTAGTAGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12273911 TATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * *
12273955 TATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTAC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12273999 AATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12274033 TATCTCCCTGGTCAGAAGTGGACTTGGTTGAAGAGTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12274077 TATCTCCCTGGTCAGCAATGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12274111 TATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
12274155 TGTCTCCCTGAG-CAGTAGTGGAGTAGGTTTAGTGGAGCAATCGAAGAAGGCGAATC
1 TATCTCCCTG-GTCAGTAGTGGAATAGG--T--TGAAG--ATTG--TAAGTC----C
* * * * * **** *
12274211 TTACCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AGTCT
1 T-ATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
12274256 TATCTCCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTAGGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** *
12274300 TATCTCCCTGGTCAACAGT-GAA-A---T--AG---GTAAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12274334 TATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** *
12274378 TATCTCCCTGGTCAACAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** *
12274412 TATCTCCCTTATCAGTCGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12274456 TATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-TCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * ** *
12274500 TATCTCCCTGAG-CAGCAGTGGACTATGTTGAAAATTACAGGTCC
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * ** * * ** ** * *
12274544 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * ****
12274588 TATCTTTCCAAGGT-AGTAG-GGAAGCAGATAT-AAGCCACT-AG-CC
1 TATC--TCCCTGGTCAGTAGTGGAA-TAGGT-TGAAGATTGTAAGTCC
* * *
12274631 TTATCTCTCTGCTAAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
12274676 TATCTCCCTAGTCAGCAGTGGAATAGGTTGATGATTATGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** *
12274720 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12274764 AATCTCCTTGGTCAGCAGTGGACTA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * **
12274798 TATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TTT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12274842 TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
** * * * * *
12274886 TATCTCCCTGACCAGCAGTGGAGTTGGTTGAAAATTAT-AGATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
*** * * * * ** * *
12274930 TATCT-CCTAAAACAGTAGTGGAGTAGATAGAAAACGGCGAA-TCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * **** *
12274974 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-CG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
12275017 TTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12275062 TATCTCCCAGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12275096 TATCTCCCTTGTCAGAAGTGGAATAGGTTGAATATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12275140 TATCTCTCTGGTCAGTAGTGTAATAGGTTGTAGATTGTAAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12275184 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * ** * ** * * ** ** * *
12275228 TAACTCTCTAAAT-AGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * ****
12275272 TAAAT-TCCCAAG-CTAGTAG-GGAAGCAGATTTG-AGCCACT-AG-CC
1 T--ATCTCCCTGGTC-AGTAGTGGAA-TAG-GTTGAAGATTGTAAGTCC
* * * *
12275315 TTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12275360 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** *
12275404 TATCTCCCTGGTCAACAGTGGAATA----G--G--TG-AA-TCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12275438 TATCTCCCTGGTCAGTAGTGGAATAGGTTGATGATTGT-AGATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
* * *
12275482 TATCTCCCTGAG-CAGCAGTGGAGA-AGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGA-ATAGGTTGAAGATTGTA-AG-TCC
* * ** * * ** ** * *
12275526 TATCTCCCTAGG-CATTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ****
12275570 TATCTTCCTAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATCTCCCT--GGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
12275613 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * *
12275658 TATCTCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
**
12275702 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12275746 TATCTCCCTGGTCAGCAGTGG---A--TT--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
12275780 GATCTCCCTGGTGAGCAGTAGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12275824 TATCTCCCTGGTCAGCAATGGAATAGGCTGAAGATTGTGAA-TCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12275868 TATGTCCCTGAG-CAGCAGTGGAGTAGGTTGAA
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAA
12275900 AATTACAGAT
Statistics
Matches: 3796, Mismatches: 942, Indels: 894
0.67 0.17 0.16
Matches are distributed among these distances:
34 303 0.08
35 38 0.01
36 30 0.01
37 13 0.00
38 17 0.00
39 16 0.00
40 18 0.00
41 19 0.01
42 101 0.03
43 319 0.08
44 2534 0.67
45 324 0.09
46 22 0.01
47 7 0.00
48 3 0.00
49 3 0.00
50 3 0.00
51 2 0.00
52 1 0.00
54 3 0.00
56 3 0.00
57 4 0.00
58 12 0.00
59 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:12271052 original size:264 final size:265
Alignment explanation
Indices: 12270406--12272360 Score: 967
Period size: 264 Copynumber: 7.5 Consensus size: 265
12270396 TCACAAAGCT
* * * * *
12270406 TTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTACCTCCATGGTTAGTAGTG
1 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTG
* * * * * *
12270471 GAATATGCTGAAGATGGTGAATCCTATCTTCCT-AGTCAGCAGTGGAATATGTTGAAGATTGTGA
66 GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGATTGTGA
*
12270535 ATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTA
131 ATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGAAGTA
* *
12270600 GTAGAGCAGATCGAAGACGGCGATTCTTATATTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCAC
196 GTAGAGCAGATCGAAGACGGCGAATCTTATATTCCCAAGATAGTAGGGAAGCAGATTTAAGCCAC
12270665 TAACC
261 TAACC
* *
12270670 TTATCTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGTAGTG
1 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTG
* * * *
12270735 GAATAGGTTAAAGATTGTGAGTTCTATCTCTCTG-GTCAA-CAGTGGAATAGGTTGAAGATTGTG
66 GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGT-AAGCAGTGGAATAGGTTGAAGATTGTG
* * * *
12270798 AATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAACTTACAGATCTTATCTCCCTAAGAAGT
130 AATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGAAGT
* * *
12270863 AGTAGAGCAGATCGAAGTCGGTGAATCTTATCTTCCCAAGATAGTAGGGAAGCAGATTTAAGCCA
195 AGTAGAGCAGATCGAAGACGGCGAATCTTATATTCCCAAGATAGTAGGGAAGCAGATTTAAGCCA
*
12270928 CTAGCC
260 CTAACC
*
12270934 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG-CGAT
1 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAG-T
* * * **
12270998 GGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-AAGTAGTGGAGTAGGTTGAAAATT-AC
65 GGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGATTGTG
* ** ** * ** * * * *** * *
12271061 AGATCTTATCTTCCTAAGCAGTAGTAAAGCA-GATCAAAGACGGCGATTCTTATCTTCCC-AAG-
130 A-ATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAA-ATTACAAATCTTATC-TCCCTAAGA
** * * ** * * * ** *
12271123 -GTAGTAGGGAAGCAGATTTAAGAC-ACTAGCCTTATA-TCCC-CGTTCAGTAGTGAAATAGGTT
192 AGTAGTA--G-AGCAGATCGAAGACGGCGAATCTTATATTCCCAAGAT-AGTAGGGAAGCAGATT
* ****
12271184 GAAGATTGTAAGTCC
253 TAAGCCACTAA--CC
* * * * * *
12271199 -TATCTCACTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAGTCATATCTCCCTGGCCAGCAGTG
1 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTG
** *
12271263 GAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTG-GCCAGCAATGG-A-A---T--A-A--GTG
66 GAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGATTGTG
* ** * *** * * *
12271316 AATCCTATC-TCCTTAGTCAGCAGTGGAATAGGTT-AAAGATTGTGAATCCTATCTCCCTGAGCA
130 AATCCTATCGCCCGGAG-CAGCAGTGGAGTAGGTTGAAA-ATTACAAATCTTATCTCCCTAAGAA
* * * * * *** * **
12271379 GTAGTGGAGTAGGTTGAAAATTAC-AGATCTTAT-CTCCCTAAGA-AGTAGTGG-AGCAGATCGA
193 GTAGTAGAGCAGATCGAAGACGGCGA-ATCTTATATTCCC-AAGATAGTAG-GGAAGCAGATTTA
* * *
12271440 AGACAGCGAATC
255 AGCCA-CTAACC
* * * * **** *
12271452 TTATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AG-CCTTATCTCCCTGGTCGGT
1 TTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCCTGGTCAGT
* * *
12271513 AGTAGAATAGGTTGAAGAGTGT-AAGTCCTATCTCCCT-AGTCAGCAGTGG-A-A---T--AG--
62 AGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGAT
* * * * *** * *
12271567 -GTGAATCCTATCTCCCTGG-TCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGA
126 TGTGAATCCTATCGCCC-GGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAA
* * * * * * *** * * * *
12271630 GCAGTAGTGGAGAAGGTTGAAAATTACAAATCTTAT-CTCCCTAAG-CAGTA-GCAGAGCAGATT
190 GAAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATATTCCC-AAGATAGTAGGGA-AGCAGATT
* ** * **
12271692 GAAGACGGCGATTC
253 TAAG-CCACTAACC
*** * * **** *
12271706 TTATCTTCACAAAGT-AGTAG-GGAAGTAGATTTAAGCCACT-AG-CCTTATCTCACTGGTCAGT
1 TTATC-TC-CCTGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCCTGGTCAGT
* * *
12271767 AGTGGAATAGGTTGAAGATTGT-AAGTCTTATCTCCATG-GTCAGCAGTGGAATAGGTTGAAGAT
62 AGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGAT
* * * ** * ** * * * *** * * *
12271830 TGCGAGTCCTATCTCCCTCACCAATAGTGAAATAGGTTTAAAATTGTGAATCCTAGCTCCCTGAG
126 TGTGAATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAG
* * * * ** * *** * * *
12271895 CAGCAGT-GTAGTAGGTTAAAAATTACAGAA-GTTAT-CTCCCTAAGCAATAGTA--G-AGTAGA
191 AAGTAGTAG-AGCAGATCGAAGACGGC-GAATCTTATATTCCC-AAG--ATAGTAGGGAAGCAGA
** * ** *
12271954 TCGAAGACGGTGAATC
251 TTTAAGCCACT-AACC
* * * * * * ** * * *
12271970 ATATCATCCCAAGGT-AGTTG-GGAAGGAGATTTAAG-CCGCT-AGGCTTATCTTCCTGGTCAGT
1 TTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTG-TAAGTCCTATCTCCCTGGTCAGT
* * * * *
12272031 AGCGGAATAGGTTGACGATTGT-AAGTCCTATCTCCCT-AGTCAGCAGTGGAATAGGCTGAAAAT
62 AGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGAT
** * * * * * *
12272094 TGTGAATCCTATATCCCTGAGCAGCGGTGGAGTAGGTTGCAAATTATAGATCTTATCCCCCTAAG
126 TGTGAATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAG
* * * * * *
12272159 CAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAA
191 AAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATATTCCCAAGATAGTAGGGAAGCAGATTTAA
*
12272224 GCCACTAGCC
256 GCCACTAACC
* * *
12272234 TTATCTTCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTG
1 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTG
* * * *
12272299 GGATAGGTTGAAGATTGTGAGTCTTATCTCCCT-TGTCAA-CAGTGGAATAGGTTGAAGATTGT
66 GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGT-AAGCAGTGGAATAGGTTGAAGATTGT
12272361 AAGTACTATC
Statistics
Matches: 1346, Mismatches: 265, Indels: 160
0.76 0.15 0.09
Matches are distributed among these distances:
252 1 0.00
253 22 0.02
254 339 0.25
255 29 0.02
256 11 0.01
257 1 0.00
259 2 0.00
261 2 0.00
262 17 0.01
263 54 0.04
264 822 0.61
265 42 0.03
267 4 0.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (265 bp):
TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTG
GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGATTGTGA
ATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGAAGTA
GTAGAGCAGATCGAAGACGGCGAATCTTATATTCCCAAGATAGTAGGGAAGCAGATTTAAGCCAC
TAACC
Found at i:12271391 original size:342 final size:332
Alignment explanation
Indices: 12270976--12271628 Score: 970
Period size: 342 Copynumber: 1.9 Consensus size: 332
12270966 AGATTGTAAG
* *
12270976 TCCTATCTCCCTGGTCAGCGATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGAAGTAG
1 TCCTATCTCCCTAGTCAGCGATGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGAAGTAG
* * *
12271041 TGGAGTAGGTTGAAAATTACAGATCTTATCTTCCTAAGCAGTAGTAAAGCAGATCAAAGACGGCG
66 TGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTAAAGCAGATCAAAGACAGCG
* *
12271106 ATTCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTAGCCTTATATCCCCGTTCAGT
131 AATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTAGCCTTATATCCCCGGTCAGT
* * *
12271171 AGT-GAAATAGGTTGAAGATTGTAAGTCCTATCTCACTGGTCAGTAGTGGAATAGGTTAAAGATT
196 AGTAG-AATAGGTTGAAGAGTGTAAGTCCTATCTCACTAGTCAGCAGTGGAATAGG-T---GA--
12271235 GTGAGTCATATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGC
254 ---A-TCATATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGC
12271299 CAGCAATGGAATAAGTGAA
314 CAGCAATGGAATAAGTGAA
* *
12271318 TCCTATCTCCTTAGTCAGC-AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGCAGTA
1 TCCTATCTCCCTAGTCAGCGA-TGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGAAGTA
** *
12271382 GTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGACAGC
65 GTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTAAAGCAGATCAAAGACAGC
* * * *
12271447 GAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCGG
130 GAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTAGCCTTATATCCCCGGTCAG
* *
12271512 TAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAATCCTA
195 TAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCACTAGTCAGCAGTGGAATAGGTGAATCATA
*
12271577 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
260 TCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
12271629 AGCAGTAGTG
Statistics
Matches: 286, Mismatches: 22, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
332 52 0.18
333 3 0.01
338 2 0.01
341 2 0.01
342 226 0.79
343 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (332 bp):
TCCTATCTCCCTAGTCAGCGATGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGAAGTAG
TGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTAAAGCAGATCAAAGACAGCG
AATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTAGCCTTATATCCCCGGTCAGT
AGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCACTAGTCAGCAGTGGAATAGGTGAATCATAT
CTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGCCAGCAATGGAAT
AAGTGAA
Found at i:12271413 original size:122 final size:122
Alignment explanation
Indices: 12271196--12271650 Score: 352
Period size: 122 Copynumber: 3.6 Consensus size: 122
12271186 AGATTGTAAG
* * * * * *
12271196 TCCTATCTCACTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAGTCATATCTCCCTGGCCAGCAG
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGCCAGTAG
*
12271261 TGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGCCAGCAATGGAATAAGTGAA
66 TGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTGGCCAGCAATGGAATAAGTGAA
*
12271318 TCCTATCTCCTTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAG-CAGTA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTG-GCCAGTA
* * ** * *
12271382 GTGGAGTAGGTTGAA-AAT-TACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGACA
65 GTGGAATAGGTTGAAGAATGTA-AG-TCCTATCTCCCT-----G--G-CCAGCA-ATGGAATA-A
*
12271445 GCGAA
118 GTGAA
* * * * * * **** * * *
12271450 TCTTATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT--AGCCTTATCTCCCTGGTCG
1 TCCTATC-TCCCTA-GTCAGCAGTGGAA-TAGGTTAAAGATTGTGAATCC-TATCTCCCTGGCCA
* * * * * *
12271511 GTAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
62 GTAGTGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTGGCCAGCAATGGAATAAGTGAA
* *
12271572 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGTA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTG-GCCAGTA
12271636 GTGGAGA-AGGTTGAA
65 GTGGA-ATAGGTTGAA
12271651 AATTACAAAT
Statistics
Matches: 253, Mismatches: 54, Indels: 52
0.70 0.15 0.14
Matches are distributed among these distances:
120 4 0.02
121 20 0.08
122 120 0.47
123 11 0.04
124 4 0.02
125 1 0.00
127 1 0.00
129 1 0.00
130 4 0.02
131 10 0.04
132 53 0.21
133 20 0.08
134 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (122 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGCCAGTAG
TGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTGGCCAGCAATGGAATAAGTGAA
Found at i:12271581 original size:34 final size:34
Alignment explanation
Indices: 12271538--12271602 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
12271528 AGAGTGTAAG
12271538 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
*
12271572 TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGT
12271603 TGAAGATTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
Found at i:12271617 original size:254 final size:255
Alignment explanation
Indices: 12271243--12272090 Score: 1112
Period size: 254 Copynumber: 3.3 Consensus size: 255
12271233 TTGTGAGTCA
* * * * *
12271243 TATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGCCAGCAATGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
* *
12271308 AATAAG-TGAATCCTATCTCCTTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCC
66 AATAGGCTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCC
*
12271372 CTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGAT
131 CTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGAT
*
12271437 CGAAGACAGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
196 CGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
* * *
12271497 TATCTCCCTGGTCGGTAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
* *
12271562 AATAGG-TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
66 AATAGGCTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCC
* * * *
12271626 CTGAGCAGTAGTGGAGAAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGCAGAGCAGAT
131 CTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGAT
* * * * *
12271691 TGAAGACGGCGATTCTTATCTTCACAAAGTAGTAGGGAAGTAGATTTAAGCCACTAGCCT
196 CGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
* * * *
12271751 TATCTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCATGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
* * ** *
12271816 AATAGGTTGAAGATTGCGAGTCCTATCTCCCTCA-CCAATAGTGAAATAGGTTTAAA-ATTGTGA
66 AATAGGCT---GA-----A-TCCTATCTCCCT-AGTCAGCAGTGGAATAGG-TTAAAGATTGTGA
* * * * **
12271879 ATCCTAGCTCCCTGAGCAGCAGTGTAGTAGGTTAAAAATTACAGAAGTTATCTCCCTAAGCAA-T
120 ATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAG-AAGT
* * * * * * *
12271943 AGTAGAGTAGATCGAAGACGGTGAATCATATCATCCCAAGGTAGTTGGGAAGGAGATTTAAGCCG
184 AGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCA
*
12272008 CTAGGCT
249 CTAGCCT
* * *
12272015 TATCTTCCTGGTCAGTAGCGGAATAGGTTGACGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
12272080 AATAGGCTGAA
66 AATAGGCTGAA
12272091 AATTGTGAAT
Statistics
Matches: 515, Mismatches: 66, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
254 295 0.57
255 1 0.00
256 1 0.00
258 2 0.00
261 2 0.00
263 1 0.00
264 208 0.40
265 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (255 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
AATAGGCTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCC
CTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGAT
CGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
Found at i:12271626 original size:78 final size:78
Alignment explanation
Indices: 12271497--12271640 Score: 211
Period size: 78 Copynumber: 1.8 Consensus size: 78
12271487 CCACTAGCCT
* *
12271497 TATCTCCCTGGTCGGTAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCT-AGTCAGCAGTG
1 TATCTCCCTGGTCAGCAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTGAG-CAGCAGTG
12271561 GAATAGGTGAATCC
65 GAATAGGTGAATCC
* * *
12271575 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAGCAGTAGTG
1 TATCTCCCTGGTCAGCAGTAGAATAGGTTGAAGAGTGT-AAGTCCTATCTCCCTGAGCAGCAGTG
12271639 GA
65 GA
12271641 GAAGGTTGAA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
78 55 0.93
79 4 0.07
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (78 bp):
TATCTCCCTGGTCAGCAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTGAGCAGCAGTGG
AATAGGTGAATCC
Found at i:12271669 original size:342 final size:343
Alignment explanation
Indices: 12270935--12271672 Score: 959
Period size: 342 Copynumber: 2.1 Consensus size: 343
12270925 CCACTAGCCT
* * * *
12270935 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCGATGG
1 TATCTCCCTGGCCAGTAGTGGAATAGGTTGAAAATT-CAA-T-CTATCTCCCTAGTCAGCGATGG
*
12271000 AATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGAAGTAGTGGAGTAGGTTGAAAATTACAGAT
63 AATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGAAGTAGTGGAGTAGGTTGAAAATTACAGAT
* * * *
12271065 CTTATCTTCCTAAGCAGTAGTAAAGCAGATCAAAGACGGCGATTCTTATCTTCCCAAGGTAGTAG
128 CTTATCTCCCTAAGAAGTAGTAAAGCAGATCAAAGACAGCGAATCTTATCTTCCCAAGGTAGTAG
* *
12271130 GGAAGCAGATTTAAGACACTAGCCTTATATCCCCGTTCAGTAGTGAAATAGGTTGAAGATTGTAA
193 GGAAGCAGATTTAAGACACTAGCCTTATATCCCCGGTCAGTAGTGAAATAGGTTGAAGAGTGTAA
* *
12271195 GTCCTATCTCACTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAGTCATATCTCCCTGGCCAGCA
258 GTCCTATCTCACTAGTCAGCAGTGGAATAGGTT--AGA---T-AGTCATATCTCCCTGGCCAGCA
12271260 GTGGAATAGGTTGAAGATTGTAAGTCC
317 GTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12271287 TATCTCCCTGGCCAGCAATGGAATAAG-TG--AA-TC---CTATCTCCTTAGTCAGC-AGTGGAA
1 TATCTCCCTGGCCAGTAGTGGAATAGGTTGAAAATTCAATCTATCTCCCTAGTCAGCGA-TGGAA
*
12271344 TAGGTTAAAGATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCT
65 TAGGTTAAAGATTGTGAATCCTATCTCCCTGAGAAGTAGTGGAGTAGGTTGAAAATTACAGATCT
** *
12271409 TATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGACAGCGAATCTTATCTTCCCAAGGTAGTAGGG
130 TATCTCCCTAAGAAGTAGTAAAGCAGATCAAAGACAGCGAATCTTATCTTCCCAAGGTAGTAGGG
* * * *
12271474 AAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCGGTAGT-AGAATAGGTTGAAGAGTGTAAG
195 AAGCAGATTTAAGACACTAGCCTTATATCCCCGGTCAGTAGTGA-AATAGGTTGAAGAGTGTAAG
* * *
12271538 TCCTATCTCCCTAGTCAGCAGTGGAATAGG-T-GA-A-TCCTATCTCCCTGGTCAGCAGTGGAAT
259 TCCTATCTCACTAGTCAGCAGTGGAATAGGTTAGATAGTCATATCTCCCTGGCCAGCAGTGGAAT
12271599 AGGTTGAAGATTGTGAA-TCC
324 AGGTTGAAGATTGT-AAGTCC
12271619 TATCTCCCTGAG-CAGTAGTGGAGA-AGGTTGAAAATTACAAATCTTATCTCCCTA
1 TATCTCCCTG-GCCAGTAGTGGA-ATAGGTTGAAAATT-C-AATC-TATCTCCCTA
12271673 AGCAGTAGCA
Statistics
Matches: 339, Mismatches: 32, Indels: 40
0.82 0.08 0.10
Matches are distributed among these distances:
332 62 0.18
333 7 0.02
335 2 0.01
336 1 0.00
337 1 0.00
338 2 0.01
341 4 0.01
342 233 0.69
348 1 0.00
349 1 0.00
351 2 0.01
352 23 0.07
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (343 bp):
TATCTCCCTGGCCAGTAGTGGAATAGGTTGAAAATTCAATCTATCTCCCTAGTCAGCGATGGAAT
AGGTTAAAGATTGTGAATCCTATCTCCCTGAGAAGTAGTGGAGTAGGTTGAAAATTACAGATCTT
ATCTCCCTAAGAAGTAGTAAAGCAGATCAAAGACAGCGAATCTTATCTTCCCAAGGTAGTAGGGA
AGCAGATTTAAGACACTAGCCTTATATCCCCGGTCAGTAGTGAAATAGGTTGAAGAGTGTAAGTC
CTATCTCACTAGTCAGCAGTGGAATAGGTTAGATAGTCATATCTCCCTGGCCAGCAGTGGAATAG
GTTGAAGATTGTAAGTCC
Found at i:12272452 original size:78 final size:78
Alignment explanation
Indices: 12272323--12272472 Score: 239
Period size: 78 Copynumber: 1.9 Consensus size: 78
12272313 TTGTGAGTCT
*
12272323 TATCTCCCTTGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
12272388 AATAGGTGAATCA
66 AATAGGTGAATCA
* * * *
12272401 TATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAATG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAGTACTATCTCCCTGGTCAGCAATG
12272465 GAATAGGT
65 GAATAGGT
12272473 TGAAGACTAC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 64 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (78 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
AATAGGTGAATCA
Found at i:12272659 original size:298 final size:298
Alignment explanation
Indices: 12272321--12273078 Score: 1054
Period size: 298 Copynumber: 2.5 Consensus size: 298
12272311 GATTGTGAGT
* * *
12272321 CTTATCTCCCTTGTCAACAGTGGAATAGGTTGAAGATTGTAAGT-ACTATCTCCCTGGTCAGCAA
1 CTTATCTCCCTGGTCAATAGTGGAATAGGTTGAAGATTGTAAGTCA-TATCTCCCTGGTCAGCAG
* * *
12272385 TGGAATAGGTGAATCATATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCT
65 TGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCT
* * *
12272450 CCCTGGTCAGCAATGGAATAGGTTGAAGACTACGAATCCTATGTCCTTGAGCAGCAGTGGAGTAG
130 CCCTGGTCAGCAGTGGAATAGGTTGAAGACTACGAATCCTATCTCCCTGAGCAGCAGTGGAGTAG
* * *
12272515 GTTAAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTA-
195 GATAAAAATTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTAT
*
12272579 CCTTCCTAAAGTAGTAGGGAAGAAGATTTAAGCCACTAGC
260 CCTTCC-AAAGTAGTAGGGAAGAAGATATAAGCCACTAGC
*
12272619 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAATAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
* * * * * *
12272684 GAAATACGTGAATCCTATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTC
66 GGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
* * * **
12272749 CCTGGTCAGCAGTGTAATAGATTGAAGATTTTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
131 CCTGGTCAGCAGTGGAATAGGTTGAAGACTACGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
* * *
12272814 ATGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATC
196 ATAAAAATTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATC
* * *
12272879 TTTCCAAGGTAGTAGGGAAGCAGATATAAGCCACTAGC
261 CTTCCAAAGTAGTAGGGAAGAAGATATAAGCCACTAGC
* *
12272917 CTTATCTCCCTGGTCATTAGTGGAATAGGTTGAAGATTGTAAGTCGTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAATAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
*
12272982 GGAATAGGTTGACGGTTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-A
66 GGAATAGG-TGA--------A-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA
* *
12273046 AGTCCAATCTCCTTGGTCAGCAGTGGAATAGGT
121 A-TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
12273079 GAATTCTATC
Statistics
Matches: 403, Mismatches: 44, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
298 328 0.81
299 9 0.02
307 3 0.01
308 63 0.16
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (298 bp):
CTTATCTCCCTGGTCAATAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
GGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
CCTGGTCAGCAGTGGAATAGGTTGAAGACTACGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
ATAAAAATTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATC
CTTCCAAAGTAGTAGGGAAGAAGATATAAGCCACTAGC
Found at i:12272750 original size:78 final size:78
Alignment explanation
Indices: 12272621--12272767 Score: 233
Period size: 78 Copynumber: 1.9 Consensus size: 78
12272611 CCACTAGCCT
*
12272621 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGA
12272686 AATACGTGAATCC
66 AATACGTGAATCC
* * *
12272699 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTAT-AAGTCATATCTCCCTGGTCAGCAGTG
*
12272763 TAATA
65 AAATA
12272768 GATTGAAGAT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 61 0.97
79 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGA
AATACGTGAATCC
Found at i:12273090 original size:386 final size:386
Alignment explanation
Indices: 12272621--12273376 Score: 1192
Period size: 386 Copynumber: 2.0 Consensus size: 386
12272611 CCACTAGCCT
**
12272621 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
* * * *
12272686 AATACGTGAATCCTATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
66 AATACGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTACC
* * * * *
12272751 TGGTCAGCAGT-GTAATAGATTGAAGATTTTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGA
131 TGGTCAACAATAG-AATAGATTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTAGAGTAGGA
* * *
12272815 TGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCT
195 TGAAAACTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCT
* * *
12272880 TTCCAAGGTAGTAGGGAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCATTAGTGGAATAG
260 TCCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAG
* *
12272945 GTTGAAGATTGTAAGTCGTATCTCCCTGGTCAGCAGTGGAATAGGTTGACGGTTGTGAGTCC
325 GTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTTGACGGTTGTGAGTCC
*
12273007 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCA-ATCTCCTTGGTCAGCAGTG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGT-CATATCTCCCTGGTCAGCAGTG
* * * * * *
12273071 GAATAGGTGAATTCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGTATCCTATCTAC
65 AAATACGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTAC
* *
12273136 CTGGTCAACAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTAGAGTAGGT
130 CTGGTCAACAATAGAATAGATTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTAGAGTAGGA
* * *
12273201 TGAAAACTACAGATCTTATCTCTCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
195 TGAAAACTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCT
*
12273266 TCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAG
260 TCCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAG
12273331 GTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGT
325 GTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGT
12273377 GAATCCTTTT
Statistics
Matches: 336, Mismatches: 32, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
386 333 0.99
387 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (386 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
AATACGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTACC
TGGTCAACAATAGAATAGATTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTAGAGTAGGAT
GAAAACTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTT
CCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGG
TTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTTGACGGTTGTGAGTCC
Found at i:12273141 original size:78 final size:78
Alignment explanation
Indices: 12273006--12273156 Score: 207
Period size: 78 Copynumber: 1.9 Consensus size: 78
12272996 GTTGTGAGTC
* * *
12273006 CTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCAGCAGTG
1 CTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCAACAATA
12273071 GAATAGGTGAATT
66 GAATAGGTGAATT
* * * *
12273084 CTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGTA-TCCTATCTACC-TGGTCAACAA
1 CTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAGTCCAATCT-CCTTGGTCAACAA
12273147 TAGAATAGGT
64 TAGAATAGGT
12273157 TGAAGATTGT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
78 61 0.95
79 3 0.05
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (78 bp):
CTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCAACAATA
GAATAGGTGAATT
Found at i:12273189 original size:122 final size:122
Alignment explanation
Indices: 12272963--12273200 Score: 329
Period size: 122 Copynumber: 2.0 Consensus size: 122
12272953 TTGTAAGTCG
* * * * *
12272963 TATCTCCCTGGTCAGCAGTGGAATAGGTTGACGGTTGTGAGTCCTATCTCCCTGGTCAACAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTACCTGGTCAACAATAG
** *
12273028 AATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCAGCAGTGGAATAGGTGAATTC
66 AATAGGTTGAAGATTGTAAGTCCAATCTCCTAAGTCAGCAGTAGAATAGGTGAATTC
*
12273085 TATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGTA-TCCTATCTACCTGGTCAACAATA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG-AGTCCTATCTACCTGGTCAACAATA
* *
12273149 GAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTAAG-CAGCAGTAGAGTAGGT
65 GAATAGGTTGAAGATTGT-AAGTCCAATCT-CCTAAGTCAGCAGTAGAATAGGT
12273201 TGAAAACTAC
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
122 95 0.93
123 7 0.07
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (122 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTACCTGGTCAACAATAG
AATAGGTTGAAGATTGTAAGTCCAATCTCCTAAGTCAGCAGTAGAATAGGTGAATTC
Found at i:12273438 original size:78 final size:78
Alignment explanation
Indices: 12273309--12273454 Score: 229
Period size: 78 Copynumber: 1.9 Consensus size: 78
12273299 TAGCCTTATC
* *
12273309 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATA
1 TCCCTGGTCAGTAGTGGAATAGGTTAAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGAAATA
12273374 GGTGAATCCTTTT
66 GGTGAATCCTTTT
* * * * *
12273387 TCCCTTGTTAGTAGTGGAATAGGTTAAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGTAATA
1 TCCCTGGTCAGTAGTGGAATAGGTTAAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGAAATA
12273452 GGT
66 GGT
12273455 TGAAGATTGT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 61 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (78 bp):
TCCCTGGTCAGTAGTGGAATAGGTTAAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGAAATA
GGTGAATCCTTTT
Found at i:12273476 original size:386 final size:387
Alignment explanation
Indices: 12272621--12273516 Score: 1110
Period size: 386 Copynumber: 2.3 Consensus size: 387
12272611 CCACTAGCCT
** * *
12272621 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT-CATATCTCCCTGGTCAGCAGT-
1 TATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTATAAGTCCA-ATCTCCCTGGTCAGCAGTG
* * * *
12272684 GAA-A--T-ACGTGAATCCTATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTA
65 GAATAGGTGAAGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTA
* * * * * *
12272745 TCTCCCTGGTCAGCAGTGTAATAGATTGAAGATTTTGAATCCTATCTCCCTGAGCAGCAGTGGAG
130 TCTACCTGGTCAACAATGTAATAGATTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTAGAG
* * *
12272810 TAGGATGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCT
195 TAGGATGAAAACTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCT
* * *
12272875 TATCTTTCCAAGGTAGTAGGGAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCATTAGTGG
260 TATCTTCCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGG
* *
12272940 AATAGGTTGAAGATTGTAAGTCGTATCTCCCTGGTCAGCAGTGGAATAGGTTGACGGTTGTGAGT
325 AATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGGAATA-G-TGAC-G-TGTGAAT
12273005 CC
386 CC
* * *
12273007 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCAGCAGTGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTATAAGTCCAATCTCCCTGGTCAGCAGTGG
* * *
12273072 AATAGGTGAA-T---T-CTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGTATCCTAT
66 AATAGGTGAAGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTAT
*
12273132 CTACCTGGTCAACAATAG-AATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTAGAG
131 CTACCTGGTCAACAAT-GTAATAGATTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTAGAG
* * * *
12273196 TAGGTTGAAAACTACAGATCTTATCTCTCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCT
195 TAGGATGAAAACTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCT
*
12273261 TATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGG
260 TATCTTCCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGG
12273326 AATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT-GAA-A-T-A-G-GTGAATCC
325 AATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGGAATAGTGACGTGTGAATCC
* * * * ** * * *
12273383 TTTTTCCCTTGTTAGTAGTGGAATAGGTTAAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGT
1 TATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTATAAGTCCAATCTCCCTGGTCAGCAGTGG
* ** * * *
12273448 AATAGGTTGAAGATTGTGAATCCTATCTCCCTCGTCAATAGTGAAAGT-GGTTGAAAATTGTGAA
66 AATAGG-TG-A-A--GTGAATCCTATCTCCCTGGTCAGCAGTGGAA-TAGGTTGAAGATTATGAA
12273512 TCCTA
125 TCCTA
12273517 GCTCCTTGAG
Statistics
Matches: 443, Mismatches: 49, Indels: 36
0.84 0.09 0.07
Matches are distributed among these distances:
376 66 0.15
377 2 0.00
378 2 0.00
379 1 0.00
380 1 0.00
381 1 0.00
382 1 0.00
384 1 0.00
385 4 0.01
386 352 0.79
387 8 0.02
388 1 0.00
390 2 0.00
391 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (387 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTATAAGTCCAATCTCCCTGGTCAGCAGTGG
AATAGGTGAAGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTAT
CTACCTGGTCAACAATGTAATAGATTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTAGAGT
AGGATGAAAACTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTT
ATCTTCCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGA
ATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGGAATAGTGACGTGTGAATCC
Found at i:12273506 original size:684 final size:684
Alignment explanation
Indices: 12272015--12273479 Score: 2347
Period size: 684 Copynumber: 2.1 Consensus size: 684
12272005 CCGCTAGGCT
* * * * * * * *
12272015 TATCTTCCTGGTCAGTAGCGGAATAGGTTGACGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGT
* * * * * *
12272080 AATAGGCTGAAAATTGTGAATCCTATATCCCTGAGCAGCGGTGGAGTAGGTTGCAAATTATAGAT
66 AATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
*
12272145 CTTATCCCCCTAAGCAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAG
131 CCTATCCCCCTAAGCAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAG
* * *
12272210 GGAAGTAGATTTAAGCCACTAGCCTTATCTTCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTAA
196 GGAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTAA
* * *
12272275 GTCCTATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCTTATCTCCCTTGTCAACA
261 GTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACA
*
12272340 GTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTGAATCATATC
326 GTGGAATAGGTTGAAGATTGTAAGTACAATCTCCCTGGTCAGCAATGGAATAGGTGAATCATATC
* * * * *
12272405 TCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAATA
391 TCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTACCTGGTCAACAATAGAATA
* * * * *
12272470 GGTTGAAGACTACGAATCCTATGTCCTTGAGCAGCAGTGGAGTAGGTTAAAAATTACAGATCTTA
456 GGTTGAAGACTACGAATCCTATCTCCCTAAGCAGCAGTAGAGTAGGTTAAAAACTACAGATCTTA
*
12272535 TCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTACCTTCCTAAAGTAGTAGGGAA
521 TCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTACCTTCCCAAAGTAGTAGGGAA
12272600 GAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
586 GAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
12272665 TATCTCCCTGGTCAGCAGTGAAATACGTGAATCC
651 TATCTCCCTGGTCAGCAGTGAAATACGTGAATCC
* *
12272699 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGT
1 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGT
* * *
12272764 AATAGATTGAAGATTTTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGATGAAAATTACAGAT
66 AATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * *
12272829 CCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAG
131 CCTATCCCCCTAAGCAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAG
* *
12272894 GGAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCATTAGTGGAATAGGTTGAAGATTGTAA
196 GGAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTAA
* * *
12272959 GTCGTATCTCCCTGGTCAGCAGTGGAATAGGTTGACGGTTGTGAGTCCTATCTCCCTGGTCAACA
261 GTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACA
* * *
12273024 GTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCAGCAGTGGAATAGGTGAATTC-TAT
326 GTGGAATAGGTTGAAGATTGTAAGTACAATCTCCCTGGTCAGCAATGGAATAGGTGAA-TCATAT
* *
12273088 CTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGTATCCTATCTACCTGGTCAACAATAGAAT
390 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTACCTGGTCAACAATAGAAT
* ** *
12273153 AGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTAGAGTAGGTTGAAAACTACAGATCTT
455 AGGTTGAAGACTACGAATCCTATCTCCCTAAGCAGCAGTAGAGTAGGTTAAAAACTACAGATCTT
* * *
12273218 ATCTCTCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGA
520 ATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTACCTTCCCAAAGTAGTAGGGA
12273283 AGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTC
585 AGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTC
*
12273348 ATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCC
650 ATATCTCCCTGGTCAGCAGTGAAATACGTGAATCC
* * * *
12273383 TTTTTCCCTTGTTAGTAGTGGAATAGGTTAAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGT
1 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGT
12273448 AATAGGTTGAAGATTGTGAATCCTATCTCCCT
66 AATAGGTTGAAGATTGTGAATCCTATCTCCCT
12273480 CGTCAATAGT
Statistics
Matches: 713, Mismatches: 67, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
684 711 1.00
685 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (684 bp):
TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGT
AATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
CCTATCCCCCTAAGCAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAG
GGAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTAA
GTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACA
GTGGAATAGGTTGAAGATTGTAAGTACAATCTCCCTGGTCAGCAATGGAATAGGTGAATCATATC
TCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTACCTGGTCAACAATAGAATA
GGTTGAAGACTACGAATCCTATCTCCCTAAGCAGCAGTAGAGTAGGTTAAAAACTACAGATCTTA
TCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTACCTTCCCAAAGTAGTAGGGAA
GAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
TATCTCCCTGGTCAGCAGTGAAATACGTGAATCC
Found at i:12274043 original size:34 final size:34
Alignment explanation
Indices: 12274000--12274138 Score: 143
Period size: 34 Copynumber: 3.8 Consensus size: 34
12273990 TGTAAGTACA
*
12274000 ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCAT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCT
* *
12274034 ATCTCCCTGGTCAGAAGTGGACTTGGTTGAAGAGTGTGAATCCT
1 ATCTCCCTGGTCAGCA---G---T-G--GAATAG-GTGAATCCT
*
12274078 ATCTCCCTGGTCAGCAATGGAATAGGTGAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCT
*
12274112 ATCTCCCTAGTCAGCAGTGGAATAGGT
1 ATCTCCCTGGTCAGCAGTGGAATAGGT
12274139 TAAAGATTGT
Statistics
Matches: 87, Mismatches: 8, Indels: 20
0.76 0.07 0.17
Matches are distributed among these distances:
34 49 0.56
35 5 0.06
37 2 0.02
38 1 0.01
40 1 0.01
41 1 0.01
43 5 0.06
44 23 0.26
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (34 bp):
ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCT
Found at i:12274084 original size:78 final size:78
Alignment explanation
Indices: 12274000--12274182 Score: 251
Period size: 78 Copynumber: 2.3 Consensus size: 78
12273990 TGTAAGTACA
* * * *
12274000 ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGGACTTGGTTGAA
1 ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCCCTAGTCAGAAGTGGAATAGGTTAAA
12274065 GAGTGTGAATCCT
66 GAGTGTGAATCCT
* * *
12274078 ATCTCCCTGGTCAGCAATGGAATAGGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAA
1 ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCCCTAGTCAGAAGTGGAATAGGTTAAA
*
12274143 GATTGTGAATCCT
66 GAGTGTGAATCCT
* * *
12274156 GTCTCCCTGAG-CAGTAGTGGAGTAGGT
1 ATCTCCCTG-GTCAGCAGTGGAATAGGT
12274183 TTAGTGGAGC
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
78 91 0.99
79 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (78 bp):
ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCCCTAGTCAGAAGTGGAATAGGTTAAA
GAGTGTGAATCCT
Found at i:12274338 original size:34 final size:34
Alignment explanation
Indices: 12274300--12274420 Score: 91
Period size: 34 Copynumber: 3.3 Consensus size: 34
12274290 TTGTAGGTCA
12274300 TATCTCCCTGGTCAACAGTGAAATAGGTAAATCC
1 TATCTCCCTGGTCAACAGTGAAATAGGTAAATCC
** * *
12274334 TATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAAAATTACAGATC
1 TATCTCCCTG-GTCAACAGTGAAATAGG-T--AAA-T-C----C
*
12274377 TTATCTCCCTGGTCAACAGTGAAATAGGTGAATCC
1 -TATCTCCCTGGTCAACAGTGAAATAGGTAAATCC
12274412 TATCTCCCT
1 TATCTCCCT
12274421 TATCAGTCGT
Statistics
Matches: 66, Mismatches: 9, Indels: 24
0.67 0.09 0.24
Matches are distributed among these distances:
34 30 0.45
35 3 0.05
37 3 0.05
38 1 0.02
39 2 0.03
40 1 0.02
41 2 0.03
43 3 0.05
44 21 0.32
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (34 bp):
TATCTCCCTGGTCAACAGTGAAATAGGTAAATCC
Found at i:12274385 original size:78 final size:77
Alignment explanation
Indices: 12274256--12274483 Score: 278
Period size: 78 Copynumber: 2.9 Consensus size: 77
12274246 CCACTAGTCT
* * *
12274256 TATCTCCCTG-GTCAGTAGGGGAATAGGTTGAAGATTGTAGGTCATATCTCCCTGGTCAACAGTG
1 TATCTCCCTGAG-CAGTAGTGGAATAGGTTGAAGATT-CAGATCATATCTCCCTGGTCAACAGTG
12274320 AAATAGGTAAATCC
64 AAATAGGTAAATCC
* * *
12274334 TATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTGGTCAACAGTGA
1 TATCTCCCTGAGCAGTAGTGGAATAGGTTGAAGATT-CAGATCATATCTCCCTGGTCAACAGTGA
*
12274399 AATAGGTGAATCC
65 AATAGGTAAATCC
* * * ** * * *
12274412 TATCTCCCTTATCAGTCGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGT
1 TATCTCCCTGAGCAGTAGTGGAATAGGTTGAAGATTCAG-ATCATATCTCCCTGGTCAACAGTGA
12274477 AATAGGT
65 AATAGGT
12274484 TGAAGATTGT
Statistics
Matches: 130, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
77 1 0.01
78 128 0.98
79 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (77 bp):
TATCTCCCTGAGCAGTAGTGGAATAGGTTGAAGATTCAGATCATATCTCCCTGGTCAACAGTGAA
ATAGGTAAATCC
Found at i:12274854 original size:386 final size:386
Alignment explanation
Indices: 12273654--12275089 Score: 1669
Period size: 386 Copynumber: 3.7 Consensus size: 386
12273644 GCTTATCTTT
* * * *
12273654 CTGGTCAGTAGCGGAATAGGTTGACGATTGT-AAGTCCTATCTCCCTAGTCAGCAGTGGAATAGG
1 CTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAGT-GAATAGG
* * * * *
12273718 CTGAAAATTGTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAATTATAGATCTTATC
64 TTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTATAGATCCTATC
* * *
12273783 T-CCTTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAATGTAGTAGGGAAG
129 TCCCTAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAG
* * * *
12273847 TAGATTTAAGCCACTAGCCTTATCTCTCTGGTCAGTAGTAGAATAGGTTGAAGATTGTAAGTCCT
194 AAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCAT
* ** * * * *
12273912 ATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCTTATCTCTCTGGTCAACAGTGGA
259 ATCTCCCTAGTCAGCAGTGAAATAGGTTGATGATTATGAGTCCTATCTCCCTGGTCAACAGTGGA
* *
12273977 ATAGTTTGAAGATTGTAAGT-ACAATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCC
324 ATAGGTTGAAGATTGTAAGTCA-AATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCC
* * * *
12274040 CTGGTCAGAAGTGGACTTGGTTGAAGAGTGTGAATCCTATCTCCCTGGTCAGC----AAT--G--
1 CTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGAATAGGTT
* * * * *
12274097 GAATA-GGTGAATCCTATCTCCCT-AGTCAGCAGTGGAATAGGTT-AAAGATTGT-GAATCCTGT
66 GAAGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAA-ATTATAG-ATCCTAT
* * *
12274158 CTCCCTGAGCAGTAGTGGAGTAGGTTTAGTGGAGCA-ATCGAAGAAGGCGAATCTTACCTTCCCA
128 CTCCCT-A--A--A--GCAGTA-G--TA---GAGCAGATCGAAGACGGCGAATCTTATCTTCCCA
* *
12274222 AGGTAGTAGGGAAGAAGATTTAAGCCACTAGTCTTATCTCCCTGGTCAGTAGGGGAATAGGTTGA
180 AGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGA
* * *
12274287 AGATTGTAGGTCATATCTCCCTGGTCAACAGTGAAATA-G--G-T-A--A--A-TCCTATCTCCC
245 AGATTGTAAGTCATATCTCCCTAGTCAGCAGTGAAATAGGTTGATGATTATGAGTCCTATCTCCC
** * * ** * *
12274342 TGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCTTATCTCCCTGGTCAACAGTGAAATAG
310 TG-GTCAACAGTGGAATAGGTTGAAGATTGTA-AG-TCAAATCTCCCTGGTCAGCAGTGGAATAG
12274404 GTGAATCCTATCTCC
372 GTGAATCCTATCTCC
**
12274419 CTTATCAGTC-GTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGTAATAGG
1 CTGGTCAG-CAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG-AATAGG
* * * * *
12274483 TTGAAGATTGTGAATCGTATCTCCCTGAGCAGCAGTGGACTATGTTGAAAATTACAGGTCCTATC
64 TTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTATAGATCCTATC
* *
12274548 TCCCT-AAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAGGGAAG
129 TCCCTAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAG
* * * * * *
12274612 CAGATATAAGCCACTAGCCTTATCTCTCTGCTAAGTAGTGGAATAGGTTGAAGATTGTAAGTCCT
194 AAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCAT
* *
12274677 ATCTCCCTAGTCAGCAGTGGAATAGGTTGATGATTATGAGTCCTATCTCCCTGGTTAACAGTGGA
259 ATCTCCCTAGTCAGCAGTGAAATAGGTTGATGATTATGAGTCCTATCTCCCTGGTCAACAGTGGA
* *
12274742 ATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGGACTAGGTGAATCCTATCTCC
324 ATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCC
* ** *
12274805 CTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATTTTATCTCCCTGGTCAGCAATAGAATAGGT
1 CTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGT-GAATAGGT
* *
12274870 TGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTTGGTTGAAAATTATAGATCCTATCT
65 TGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTATAGATCCTATCT
* * * * *
12274935 -CCTAAAACAGTAGTGGAGTAGATAGAAAACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGA
130 CCCTAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGA
* *
12274999 AGATTTAAGCCACTCGCCTTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCATA
195 AGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATA
12275064 TCTCCC-AGGTCAGCAGTGAAATAGGT
260 TCTCCCTA-GTCAGCAGTGAAATAGGT
12275090 GAATCCTATC
Statistics
Matches: 879, Mismatches: 117, Indels: 108
0.80 0.11 0.10
Matches are distributed among these distances:
375 10 0.01
376 158 0.18
377 10 0.01
378 6 0.01
379 113 0.13
380 5 0.01
381 9 0.01
382 1 0.00
383 2 0.00
384 9 0.01
385 9 0.01
386 358 0.41
387 9 0.01
388 7 0.01
389 162 0.18
390 11 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (386 bp):
CTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGAATAGGTT
GAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTATAGATCCTATCTC
CCTAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAA
GATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATAT
CTCCCTAGTCAGCAGTGAAATAGGTTGATGATTATGAGTCCTATCTCCCTGGTCAACAGTGGAAT
AGGTTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCC
Found at i:12274869 original size:78 final size:78
Alignment explanation
Indices: 12274717--12274869 Score: 218
Period size: 78 Copynumber: 2.0 Consensus size: 78
12274707 TGATTATGAG
* *
12274717 TCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAG
1 TCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAA
* *
12274782 TGGACTAGGTGAA
66 TAGAATAGGTGAA
* ***
12274795 TCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TTTTATCTCCCTGGTCAGCA
1 TCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGT-AAGTCAAATCTCCCTGGTCAGCA
12274859 ATAGAATAGGT
65 ATAGAATAGGT
12274870 TGAAGATTGT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
78 64 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (78 bp):
TCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAA
TAGAATAGGTGAA
Found at i:12274891 original size:122 final size:122
Alignment explanation
Indices: 12274673--12274907 Score: 310
Period size: 122 Copynumber: 1.9 Consensus size: 122
12274663 AGATTGTAAG
* * * *
12274673 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGATGATTATGAGTCCTATCTCCCTGGTTAACAG
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAACAA
* * **
12274738 TGGAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGGACTAGGTGAA
66 TAGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGACCAGCAGTGGACTAGGTGAA
* * * ** *
12274795 TCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATTTTATCTCCCTGGTCAGCAA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAACAA
**
12274860 TAGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGACCAGCAGTGGA
66 TAGAATAGGTTGAAGATTGT-AAGTCAAATCTCCCTGACCAGCAGTGGA
12274908 GTTGGTTGAA
Statistics
Matches: 96, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
122 94 0.98
123 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (122 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAACAA
TAGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGACCAGCAGTGGACTAGGTGAA
Found at i:12275091 original size:298 final size:295
Alignment explanation
Indices: 12274720--12275765 Score: 1209
Period size: 298 Copynumber: 3.5 Consensus size: 295
12274710 TTATGAGTCC
* ** * ** *
12274720 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGA
* * * **
12274785 ACTAGGTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATTTTATCTCCC
66 AATAGGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* * *
12274850 TGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTTGGTT
131 TGGTCAGCAGT-GAATAGGTTGAAGATTGT-AATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
* * * * * * *
12274915 GAAAATTATAGATCCTATCTCCTAAAACAGTAGTGGAGTAGATAGAAAACGGCGAATCTTATCTT
194 GAAAATTACAGATCTTATCTCCT-AAACAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTT
*
12274980 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTCGCCT
258 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
*
12275018 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGA
* * *
12275083 AATAGGTGAATCCTATCTCCCTTGTCAGA-AGTGGAATAGGTTGAATATTGTGAATCCTATCTCT
66 AATAGGTGAATCCTATCTCCCTGGTCA-ACAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
* *
12275147 CTGGTCAGTAGTGTAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
130 CTGGTCAGCAGTG-AATAGGTTGAAGATTGT-AATCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
* * **
12275212 TGAAAATTACAGATCTTAACTCTCTAAATAGTAGTAGAGCAGATCGAAGACGGCGATTCTTAAAT
193 TGAAAATTACAGATCTTATCTC-CTAAACAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCT
* * *
12275277 TCCCAAGCTAGTAGGGAAGCAGATTTGAGCCACTAGCCT
257 TCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * * * * *
12275316 TATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGT-G
* *
12275381 AATAGGTTGAAGACTGTGAGTCTTATCTCCCTGGTCAACAGTGG-A-A---T--AG---GTGAAT
65 AA-A---T--AG---GTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAAT
* * *
12275436 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGATGATTGTAGATCCTATCTCCCTGAGCAGCAGT
121 CCTATCTCCCTGGTCAGCAGT-GAATAGGTTGAAGATTGTA-ATCCTATCTCCCTGAGCAGCAGT
* ** *
12275501 GGAGAAGGTTGAAAATTACAGATCTTATCTCCCTAGGCATTAGTAGAGCAGATCGAAGACGGCGA
184 GGAGTAGGTTGAAAATTACAGATCTTATCT-CCTAAACAGTAGTAGAGCAGATCGAAGACGGCGA
*
12275566 TTCTTATCTTCCTAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
248 TTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* *
12275614 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCCTATCTCCCTA-GTCAGCAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCC-AGGTCAGCAGTG
* *
12275678 GAATAGGTTCAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AA
65 AAATAGG-T---GA-----A-TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAA
12275742 GTCCTATCTCCCTGGTCAGCAGTG
120 -TCCTATCTCCCTGGTCAGCAGTG
12275766 GATTAGGTGA
Statistics
Matches: 637, Mismatches: 72, Indels: 69
0.82 0.09 0.09
Matches are distributed among these distances:
288 1 0.00
289 1 0.00
291 2 0.00
292 2 0.00
293 1 0.00
296 1 0.00
297 4 0.01
298 555 0.87
299 8 0.01
300 2 0.00
301 1 0.00
303 3 0.00
305 4 0.01
306 1 0.00
307 5 0.01
308 46 0.07
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (295 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGA
AATAGGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
TGGTCAGCAGTGAATAGGTTGAAGATTGTAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGA
AAATTACAGATCTTATCTCCTAAACAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCC
AAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
Found at i:12275110 original size:34 final size:35
Alignment explanation
Indices: 12275062--12275128 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
12275052 TTGTAAGTCA
*
12275062 TATCTCCCAGGTCAGCAGTGAAATAGG-TGAATCC
1 TATCTCCCAGGTCAGAAGTGAAATAGGTTGAATCC
** *
12275096 TATCTCCCTTGTCAGAAGTGGAATAGGTTGAAT
1 TATCTCCCAGGTCAGAAGTGAAATAGGTTGAAT
12275129 ATTGTGAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 23 0.82
35 5 0.18
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (35 bp):
TATCTCCCAGGTCAGAAGTGAAATAGGTTGAATCC
Found at i:12275153 original size:78 final size:78
Alignment explanation
Indices: 12275018--12275167 Score: 212
Period size: 78 Copynumber: 1.9 Consensus size: 78
12275008 CCACTCGCCT
*
12275018 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGA
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGA
12275083 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * * *
12275096 TATCTCCCTTGTCAGAAGTGGAATAGGTTGAATATTGTGAA-TCCTATCTCTCTGGTCAGTAGTG
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAGATTGT-AAGTCATATCTCCCAGGTCAGCAGTG
*
12275160 TAATAGGT
65 AAATAGGT
12275168 TGTAGATTGT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
78 61 0.97
79 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (78 bp):
TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGA
AATAGGTGAATCC
Found at i:12275387 original size:342 final size:341
Alignment explanation
Indices: 12272015--12276057 Score: 1668
Period size: 342 Copynumber: 11.8 Consensus size: 341
12272005 CCGCTAGGCT
* * * * * *
12272015 TATCTTCCTGGTCAGTAGCGGAATAGGTTGACGATTGT-AAGTCCTATCTCCCTAGTCAGCAGTG
1 TATCTCCCTTGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAGTG
* * * * * * *
12272079 GAATAGGCTGAAAATTGTGAATCCTATATCCCTGAGCAGCGGTGGAGTAGGTTGCAAATTATAGA
65 GAATAGGTTGAAGATTGTGAATCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
* * * * * *
12272144 TCTTATCCCCCTAAGCAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTA
130 TCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGACGATTCTTA-ATTCCCAAGGTAGTA
* * * * *
12272209 GGGAAGTAGATTTAAGCCACTAGCCTTATCTTCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTA
194 GGGAAGCAGATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATA
* * * *
12272274 AGTCCTATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCTTATCTCCCTTGTCAAC
259 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAAC
*
12272339 AGTGGAATAGGTTGAAGATTGTAAGTAC
324 AGTGGAATA----G--G--TG-AA-TCC
* * *
12272367 TATCTCCCTGGTCAGCAATGG-A-A---T--AG---GTGAATCATATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTTGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGG
* * * * * * *
12272422 ACTTGGTTGAAGATTGTGAATCCTATCTCCCTG-GTCAGCAATGGAATAGGTTGAAGACTAC-GA
66 AATAGGTTGAAGATTGTGAATCTTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTACAG-
* * * * * * * * ** * ** * *
12272485 ATCCTATGTCCTTGAGCAGCAGTGGAGTAGGTTAAAAATTACAGA-TCTT-ATCTCCCAAAGCAG
129 ATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGAC-GATTCTTAAT-TCCCAAGGTAG
* ** * ** * * * * * *
12272548 TAGTGG-AGCAGA-TCGAAGACGGCGAATCTTACCTTCCTAAAGT-AGTAG-GGAAGAAGATTTA
192 TAG-GGAAGCAGATTTG-AG-CCACTAGCCTTATCTCCCT--GGTCAGTAGTGGAA-TAGGTTGA
** * *
12272609 AG-CCACT-AG-CCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTC
251 AGATTA-TAAGTCC-TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTC
* * *
12272671 CCTGGTCAGCAGTGAAATACGTGAATCC
314 CCTGGTCAACAGTGGAATAGGTGAATCC
* * * *
12272699 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGT
1 TATCTCCCTTGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGG
* * * *
12272764 AATAGATTGAAGATTTTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGATGAAAATTACAGAT
66 AATAGGTTGAAGATTGTGAATCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * * * * *
12272829 CCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAG
131 CTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGACGATTCTTA-ATTCCCAAGGTAGTAG
* * * *
12272894 GGAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCATTAGTGGAATAGGTTGAAGATTGTAA
195 GGAAGCAGATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAA
* * * *
12272959 GTCGTATCTCCCTGGTCAGCAGTGGAATAGGTTGACGGTTGTGAGTCCTATCTCCCTGGTCAACA
260 GTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACA
**
12273024 GTGGAATAGGTTGAAGATTG
325 GTGGAATAGG-TG-A-ATCC
*
12273044 TAAGTCCAATCTCCTTGGTCAGCAGTGGAATAGG-TG-A-A---T---T-CTATCTCCCTGGTTA
1 T-A-T-C--TC-CCTT-GTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCA
* * * * * * * *
12273099 GCAGTGGAATAGGTTGAAGATTGTGTATCCTATCTACCTG-GTCAACAATAGAATAGGTTGAAGA
59 GCAGTGGAATAGGTTGAAGATTGTGAATCTTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAA
** * * * * * * * * * *
12273163 TT-GTGAATCCTATCTCCCTAAGCAGCAGTAGAGTAGGTTGAAAACTACAGA-TCTT-ATCTCTC
123 TTACAG-ATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGAC-GATTCTTAAT-TCCC
* * * ** * ** * *
12273225 AAAGCAGTAGTGG-AGCAGA-TCGAAGACGGCGAATCTTATCTTCCCAAGGT-AGTAG-GGAAGA
185 AAGGTAGTAG-GGAAGCAGATTTG-AG-CCACTAGCCTTATC-TCCC-TGGTCAGTAGTGGAA-T
* * ** *
12273286 AGATTTAAG-CCACT-AG-CCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTC
244 AGGTTGAAGATTA-TAAGTCC-TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12273348 ATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCC
307 CTATCTCCCTGGTCAACAGTGGAATAGGTGAATCC
* * * * * * * *
12273383 TTTTTCCCTTGTTAGTAGTGGAATAGGTTAAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGT
1 TATCTCCCTTGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGG
* * ** * **
12273448 AATAGGTTGAAGATTGTGAATCCTATCTCCCTCG-TCAATAGTGAAAGT-GGTTGAAAATT-GTG
66 AATAGGTTGAAGATTGTGAATCTTATCTCCCT-GAGCAGCAGTG-GAGTAGGTTGAAAATTACAG
* * * * * * * * * ** * ** ** *
12273510 AATCCTAGCTCCTTGAGCAGCAGTGTAGTAGGTTAAAAATTACAGA-AGTT-ATCTGCCTAAGCG
129 -ATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGAC-GATTCTTAAT-T-CCCAA--G
* * * ** ** * * *
12273573 GTAGTA--GAA-TAGA-TCGAAGACGGTGAATCATATCAT-CCTAAGGT-AGTAG-GGAAGGAGA
188 GTAGTAGGGAAGCAGATTTG-AGCCACT-AGCCTTATC-TCCCT--GGTCAGTAGTGGAA-TAGG
* *** * * ** * * *
12273631 TTTAAGACGCT-AGGCTTATCTTTCTGGTCAGTAGCGGAATAGGTTGACGATTGTAAGTCCTATC
247 TTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATC
* *
12273695 TCCCTAGTCAGCAGTGGAATAGGCTGAAAATTGTGAATCC
312 TCCCTGGTCAACAGTGGAATA----G------GTGAATCC
* * * * * * * *
12273735 TATATCCC-TGAGCAGCAGTGGAGTAGGTTGCAA-ATTAT-AGATCTTATCTCCTTAAG-CAGTA
1 TATCTCCCTTG-TCAGCAGTGGAATAGGTTG-AAGATTGTGA-ATCCTATCTCCCT-GGTCAGCA
* ** * * ** * * * * * * * **
12273796 GTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCC-AATGTAGTAG-GGAAGTAGATT-TAAGC
62 GTGGAATAGGTTGAAGATTGTGAATCTTATC-TCCCTGA-GCAGCAGTGG-AGTAGGTTGAAAAT
* * * *** * ** * * * * *
12273858 CACTAG-CCTTATCTCTCTGGTCAGTAGTAGAATAGGTTGAAGATTGTA--AGTCCT-ATCTCCC
124 TAC-AGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGA-CG-ACGATTCTTAAT-TCCC
* * * * * **** * * **
12273919 -TGGTCAGCAGTGGGA-TAG-GTTGAAGATTGTGAGTCTTATCTCTCTGGTCAACAGTGGAATAG
185 AAGGT-AGTAG-GGAAGCAGATTTG-AGCCACT-AGCCTTATCTCCCTGGTCAGTAGTGGAATAG
* * * * *
12273981 TTTGAAGATTGTAAGTACAATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCATAT
246 GTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTAT
*
12274036 CTCCCTGGTCAGA-AGTGGACTTGGTTGAAGAGTGTGAATCC
311 CTCCCTGGTCA-ACA---G---T-G--GAATAG-GTGAATCC
* * *
12274077 TATCTCCCTGGTCAGCAATGG-A-A---T--AG---GTGAATCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTTGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGG
* * * * *
12274132 AATAGGTTAAAGATTGTGAATCCTGTCTCCCTGAGCAGTAGTGGAGTAGGTTTAGTGGAGCAATC
66 AATAGGTTGAAGATTGTGAATCTTATCTCCCTGAGCAGCAGTGGAGTAGG--T--T-GA-AAAT-
* * * ** * ** * * *
12274197 GAAGAAGGCGAATCTTACCTTCCC-AAGGTAGTAG-GGAAGAAGATTTAAG-CCACTAGTCTT-A
124 -TA-CA---G-ATCTTATC-TCCCTAA-ACAGTAGTGG-AGCAGATCGAAGACGACGATTCTTAA
* * * **** * * **
12274258 TCTCCC-TGGTCAGTAGGGGAA-TAG-GTTGAAGATTGTAGGTCATATCTCCCTGGTCAACAGT-
180 T-TCCCAAGGT-AGTA-GGGAAGCAGATTTG-AGCCACTA-GCCTTATCTCCCTGGTCAGTAGTG
* * * *
12274319 GAA-A---T--AG-GTA-AA-TCCTATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TAC
240 GAATAGGTTGAAGATTATAAGTCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-
* *
12274372 AGATCTTATCTCCCTGGTCAACAGTGAAATAGGTGAATCC
303 AG-TCCTATCTCCCTGGTCAACAGTGGAATAGGTGAATCC
*
12274412 TATCTCCCTTATCAGTC-GTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG
1 TATCTCCCTTGTCAG-CAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG
* * * * *
12274476 TAATAGGTTGAAGATTGTGAATCGTATCTCCCTGAGCAGCAGTGGACTATGTTGAAAATTACAGG
65 GAATAGGTTGAAGATTGTGAATCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
* * * * * *
12274541 TCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTA
130 TCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGACGATTCTTA-ATTCCCAAGGTAGTA
* * * * * *
12274606 GGGAAGCAGATATAAGCCACTAGCCTTATCTCTCTGCTAAGTAGTGGAATAGGTTGAAGATTGTA
194 GGGAAGCAGATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATA
* * * * *
12274671 AGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGATGATTATGAGTCCTATCTCCCTGGTTAAC
259 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAAC
**
12274736 AGTGGAATAGGTTGAAGATTG
324 AGTGGAATAGG-TG-A-ATCC
* *
12274757 TAAGTCAAATCTCCTTGGTCAGCAGTGG---A--CT--AG---GTGAATCCTATCTCCCTGGTTA
1 T-A-TC---TC-CCTT-GTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCA
* * * * *
12274812 GCAGTGGAATAGGTTGAAGATTGTGAATTTTATCTCCCTG-GTCAGCAATAGAATAGGTTGAAGA
59 GCAGTGGAATAGGTTGAAGATTGTGAATCTTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAA
** * * * * ** * * * ** * * *
12274876 TT-GTGAATCCTATCTCCCTGACCAGCAGTGGAGTTGGTTGAAAATTATAGA-TCCT-ATCTCCT
123 TTACAG-ATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGA-CGATTCTTAAT-TCCC
*** * * * ** * ** * *
12274938 AAAACAGTAGTGG-AGTAGA-TAGAAAACGGCGAATCTTATCTTCCCAAGGT-AGTAG-GGAAGA
185 AAGGTAGTAG-GGAAGCAGATTTG--AGCCACTAGCCTTATC-TCCC-TGGTCAGTAGTGGAA-T
* * ** * *
12274999 AGATTTAAG-CCACT-CG-CCTTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTC
244 AGGTTGAAGATTA-TAAGTCC-TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * * *
12275061 ATATCTCCCAGGTCAGCAGTGAAATAGGTGAATCC
307 CTATCTCCCTGGTCAACAGTGGAATAGGTGAATCC
* * * * *
12275096 TATCTCCCTTGTCAGAAGTGGAATAGGTTGAATATTGTGAATCCTATCTCTCTGGTCAGTAGTGT
1 TATCTCCCTTGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGG
* * *
12275161 AATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
66 AATAGGTTGAAGATTGTGAATCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * * * * *
12275226 CTTAACTCTCTAAATAGTAGTAGAGCAGATCGAAGACGGCGATTCTTAAATTCCCAAGCTAGTAG
131 CTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGACGATTCTT-AATTCCCAAGGTAGTAG
* * *
12275291 GGAAGCAGATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAA
195 GGAAGCAGATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAA
* * *
12275356 GTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCTTATCTCCCTGGTCAACA
260 GTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACA
*
12275421 GTGGAATAGGTGAATCT
325 GTGGAATAGGTGAATCC
* * *
12275438 TATCTCCCTGGTCAGTAGTGGAATAGGTTGATGATTGT-AGATCCTATCTCCCTGAG-CAGCAGT
1 TATCTCCCTTGTCAGCAGTGGAATAGGTTGAAGATTGTGA-ATCCTATCTCCCTG-GTCAGCAGT
* ** ** * * * * * ***
12275501 GGAGA-AGGTTGAAAATT-ACAGATCTTATCTCCCT-AGGCATTAGTAGAGCAGATCGAAGACGG
64 GGA-ATAGGTTGAAGATTGTGA-ATCTTATCTCCCTGA-GCAGCAGTGGAGTAGGTTGAAAATTA
* ** * ** * * ** *
12275563 C-GATTCTTATCTTCCTAAGGTAGTAG-GGAAGAAGATTTAAG-CCACTAGCCTT-ATCTCCC-T
126 CAGA-TCTTATCTCCCTAA-ACAGTAGTGG-AGCAGATCGAAGACGACGATTCTTAAT-TCCCAA
* * **** * *
12275623 GGTCAGTAGTGGAA-TAG-GTTGAAGATTTTAAGTCC-TATCTCCCTAGTCAGCAGTGGAATAGG
187 GGT-AGTAG-GGAAGCAGATTTG-AGCCACT-AG-CCTTATCTCCCTGGTCAGTAGTGGAATAGG
* * * * *
12275685 TTCAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATC
247 TTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATC
* *
12275750 TCCCTGGTCAGCAGTGGATTAGGTGAATCC
312 TCCCTGGTCAACAGTGGAATAGGTGAATCC
* * * * * *
12275780 GATCTCCCTGGTGAGCAGTAGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAATGG
1 TATCTCCCTTGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGG
* *
12275845 AATAGGCTGAAGATTGTGAATCTTATGTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
66 AATAGGTTGAAGATTGTGAATCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * *
12275910 CTTATCT-CCTAAAGCAGTAGTGGAACAGAT-GAAGACGACGAATCTTATCTTCCCAAGGTAGTA
131 CTTATCTCCCTAAA-CAGTAGTGGAGCAGATCGAAGACGACGATTCTTA-ATTCCCAAGGTAGTA
* * * * * *
12275973 GGGAAGAAAATTTCAGCCAGTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTA
194 GGGAAGCAGATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATA
*
12276038 AGTCCTATCTCCCTAGTCAG
259 AGTCCTATCTCCCTGGTCAG
12276058 NNNNNNNNNN
Statistics
Matches: 2762, Mismatches: 660, Indels: 549
0.70 0.17 0.14
Matches are distributed among these distances:
331 36 0.01
332 118 0.04
333 31 0.01
334 15 0.01
335 49 0.02
336 11 0.00
337 10 0.00
338 6 0.00
339 16 0.01
340 31 0.01
341 207 0.07
342 1600 0.58
343 150 0.05
344 22 0.01
345 168 0.06
346 22 0.01
347 6 0.00
348 6 0.00
349 6 0.00
350 9 0.00
351 34 0.01
352 192 0.07
353 15 0.01
354 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (341 bp):
TATCTCCCTTGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGG
AATAGGTTGAAGATTGTGAATCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
CTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGACGATTCTTAATTCCCAAGGTAGTAGG
GAAGCAGATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAG
TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACAG
TGGAATAGGTGAATCC
Found at i:12275444 original size:34 final size:34
Alignment explanation
Indices: 12275396--12275465 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
12275386 GTTGAAGACT
*
12275396 GTGAGTCTTATCTCCCTGGTCAACAGTGGAATAG
1 GTGAATCTTATCTCCCTGGTCAACAGTGGAATAG
**
12275430 GTGAATCTTATCTCCCTGGTCAGTAGTGGAATAG
1 GTGAATCTTATCTCCCTGGTCAACAGTGGAATAG
12275464 GT
1 GT
12275466 TGATGATTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (34 bp):
GTGAATCTTATCTCCCTGGTCAACAGTGGAATAG
Found at i:12275531 original size:122 final size:122
Alignment explanation
Indices: 12275314--12275534 Score: 299
Period size: 122 Copynumber: 1.8 Consensus size: 122
12275304 AGCCACTAGC
*
12275314 CTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGT
* *
12275379 GGAATAGGTTGAAGACTGTGAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTGAAT
66 GGAATAGGTTGAAGAATGTCAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTGAAT
* * * *
12275436 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGATGATTGT-AGATCCTATCTCCCTGAG-CAGCA
1 CTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGATTATAAG-TCCTATCTCCCTG-GTCAGCA
12275499 GTGGAGA-AGGTTGAA-AAT-TACAGATCTTATCTCCCT
64 GTGGA-ATAGGTTGAAGAATGT-CAG-TCTTATCTCCCT
12275535 AGGCATTAGT
Statistics
Matches: 87, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
120 1 0.01
121 6 0.07
122 78 0.90
123 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (122 bp):
CTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGT
GGAATAGGTTGAAGAATGTCAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTGAAT
Found at i:12275876 original size:122 final size:122
Alignment explanation
Indices: 12275659--12275895 Score: 325
Period size: 122 Copynumber: 1.9 Consensus size: 122
12275649 TTTAAGTCCT
* * * * *
12275659 ATCTCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGGA
1 ATCTCCCTAGTCAGCAGTAGAATAGGTTCAAGATTATGAATCCTATCTCCCTGGTCAACAATGGA
* *
12275724 ATAGGTTGAAGATTGTAAGTCCTATCTCCCTG-GTCAGCAGTGGATTAGGTGAATCCG
66 ATAGGCTGAAGATTGTAAGTCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTGAATCCG
* * * *
12275781 ATCTCCCTGGTGAGCAGTAGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAATGGA
1 ATCTCCCTAGTCAGCAGTAGAATAGGTTCAAGATTATGAATCCTATCTCCCTGGTCAACAATGGA
* *
12275846 ATAGGCTGAAGATTGTGAA-TCTTATGTCCCTGAGCAGCAGTGGAGTAGGT
66 ATAGGCTGAAGATTGT-AAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
12275896 TGAAAATTAC
Statistics
Matches: 100, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
122 97 0.97
123 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (122 bp):
ATCTCCCTAGTCAGCAGTAGAATAGGTTCAAGATTATGAATCCTATCTCCCTGGTCAACAATGGA
ATAGGCTGAAGATTGTAAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTGAATCCG
Found at i:12276637 original size:44 final size:44
Alignment explanation
Indices: 12276571--12278800 Score: 858
Period size: 44 Copynumber: 51.8 Consensus size: 44
12276561 AGTGGAATGG
*
12276571 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATCGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * *
12276615 TTGAATCCTATCTCCCTCGTCAGCAATGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * *
12276659 GTGAATCCTATGTGCCTGAG-CAGCAGTGGAATAGGTTGAAAATT
1 GTGAATCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATT
** * ** * * * * *
12276703 -ACAGATCTTATCTCCCAAAG-CAGTAGGGGAACA-GATGAAGA-C
1 GTGA-ATCCTATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATT
* * * * * ** ***
12276745 GATGAATCTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTCAGCCA
1 G-TGAATCCTATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATT
* * * * *
12276791 CT--AGCCTTATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATT
1 GTGAATCC-TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * * * *
12276834 CTGAGTCCTATATCCCTGGTCA-CTGGTGGAATAGGTTCAAGATG
1 GTGAATCCTATCTCCCTGGTCAGC-AGTGGAATAGGTTGAAGATT
* * *
12276878 GT-AAGTCCTATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATT
1 GTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * * * *
12276922 CTGAGTCCTATATCCCTGGTCA-CTGGTGGAATAGGTTCAAGATG
1 GTGAATCCTATCTCCCTGGTCAGC-AGTGGAATAGGTTGAAGATT
* * *
12276966 GT-AAGTCCTATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATT
1 GTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * * * *
12277010 CTGAGTCCTATATCCCTGGTCA-CTGGTGGAATAGGTTCAAGATG
1 GTGAATCCTATCTCCCTGGTCAGC-AGTGGAATAGGTTGAAGATT
* * *
12277054 GT-AAGTCCTATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATT
1 GTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * * * *
12277098 CTGAGTCCTATATCCCTGGTCA-CTGGTGGAATAGGTTCAAGATG
1 GTGAATCCTATCTCCCTGGTCAGC-AGTGGAATAGGTTGAAGATT
12277142 GT-AAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
1 GTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
** * *
12277186 GTGAATTTTATCTCCCTGGTCAGTAGTGGAAT-GATTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAG-GTTGAAGATT
* * *
12277230 GT-AAGTCCTATC-CCCTAGTCAGCAGTGGAATAGATTGAGGATT
1 GTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * * * *
12277273 CTGAGTCCTATATCCCTGGTCA-CTGGTGGAATAGGTTCAAGATG
1 GTGAATCCTATCTCCCTGGTCAGC-AGTGGAATAGGTTGAAGATT
12277317 GT-AAGTCCTATCTCCCTGGTCAGCAGTGG-A-A---T--AG---
1 GTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* *
12277351 GTGAATCCTATCTCCCTGGTCACCAGTAGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* **
12277395 GTGAATCCTATCTCCCTGGACAGCAACGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * *
12277439 GTGAATCCTATGTTCCTGAG-CAGCAGTGGAGTAGGTTGAAAATT
1 GTGAATCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATT
* * * * ** ** * **
12277483 -AGAGATCTTATCTCCCAAGG-CAGTAGTGGAGCAAATCGAAGACG
1 GTGA-ATCCTATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATT
* * * * *
12277527 GCGAATCTTACCTTCCCAAGGT-AGTA--GGAA-A----GAAGATT
1 GTGAATCCTATC-TCCC-TGGTCAGCAGTGGAATAGGTTGAAGATT
* *
12277565 -TAACCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT
1 GTGA---A-T--CC-TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * *
12277615 -TTAAGTCATATCTCCCGGGTCAGCAGT-CAA-A--TT----A--
1 GTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * *
12277649 GTGAATCCTATCTCCCTTGTCAGTAGTGGAATATGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* *
12277693 GTGAATCCTATCTCCCTGGTCAGTAGTGTAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * *
12277737 GTGAATCCTATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAAAATT
1 GTGAATCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATT
** * * * ** * ** * * **
12277781 -ACAGATCTTATCTCTCTAAGT-AGTTGTAGAGCAGATCGAAGACG
1 GTGA-ATCCTATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATT
* * * * ** * * * * *
12277825 GCGATTCTTATATTCCCAAG-CTGGTAG-GGAAGCAGATT--TGA--
1 GTGAATCCTAT-CTCCCTGGTC-AGCAGTGGAA-TAGGTTGAAGATT
* * * * * * * *
12277866 GTCACTAGCCTTATCTCCCTCGTCAGTAATTGAACAGGTTGAAGGTT
1 GTGA--ATCC-TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
*
12277913 AT-AAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
1 GTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * *
12277957 GTGAGTCCTATCTCCCTAGTCAACAGTGGAATAGG-TG-A-A--
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
12277996 -T--A--CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
*
12278035 GTGAATCCTATCTCCCT-GTGCAGCAGTGGAGA-AGGTTGAAAATT
1 GTGAATCCTATCTCCCTGGT-CAGCAGTGGA-ATAGGTTGAAGATT
** * * * * * **
12278079 -ACAGATCTTATCTCCCTAAG-CAGTAGTAGAGCATA--TCGAAGACG
1 GTGA-ATCCTATCTCCCT-GGTCAGCAGT-G-GAATAGGTTGAAGATT
* * * * * * * ** ***
12278123 GCGATTCTTATCTTCCCAAGG-CAGTAG-GCAAGCATATAT-AAGCCA
1 GTGAATCCTATC-TCCC-TGGTCAGCAGTGGAA-TAGGT-TGAAGATT
* * *
12278168 CT--AGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT
1 GTGAATCC-TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* *
12278211 GT-AAGTCGTATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATT
1 GTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * *
12278255 GTGAGTCCTATCTCCCTGGTCAACAATGGAATAGGATGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * ** *
12278299 GT-ATGTCCAATCTCATTGGTCTGCAGTGGAATAGG-TG-A-A--
1 GTGA-ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * *
12278338 -T---T-CTATCTCCCAGGTTAGCAATGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * *
12278377 GTGAATCCTATCTCCCTGGTCAGTAATAGAATAGGCTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * * *
12278421 GTGAATCCTATCTCCCTGAG-CAGAAGTCGAGTAGGTTGAAAACT
1 GTGAATCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATT
* * **** * ** * * **
12278465 AT-AGATCTTATCTCCCAAACCAGTAGTGGACCAGATCGAAGACG
1 GTGA-ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * * * * * * ***
12278509 GCGAATCTTATCTTCCCAAGGT-AGTA-CGGAAGAAGATTTAAGCCA
1 GTGAATCCTATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATT
* * *
12278554 CT--AGCCTTATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATT
1 GTGAATCC-TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATT
*
12278598 GT-AAGTCATATCTCCCTGGTCAGCAGT-GAA-A---T--AG---
1 GTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * *
12278632 GTGAATCCTTTGTCCCTTGTCAGTAGTGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * *
12278676 ATGAGTCCTATCTCTCTGGTCAGCAGTGTAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* ** * *
12278720 GTGAATCCTATCTCCCTCGTCAATAGTGAAATAGGTTGAAAATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* *
12278764 GTGAATCCTAGCTCCCTGAG-CAGCAGTGGAGTAGGTT
1 GTGAATCCTATCTCCCTG-GTCAGCAGTGGAATAGGTT
12278801 AAAAATTACA
Statistics
Matches: 1632, Mismatches: 384, Indels: 340
0.69 0.16 0.14
Matches are distributed among these distances:
34 108 0.07
35 18 0.01
36 6 0.00
37 7 0.00
38 9 0.01
39 4 0.00
40 5 0.00
41 9 0.01
42 18 0.01
43 156 0.10
44 1163 0.71
45 110 0.07
46 7 0.00
47 3 0.00
50 9 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (44 bp):
GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
Found at i:12276947 original size:88 final size:88
Alignment explanation
Indices: 12276798--12277348 Score: 944
Period size: 88 Copynumber: 6.3 Consensus size: 88
12276788 CCACTAGCCT
12276798 TATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATTCTGAGTCCTATATCCCTGGTCACTGGTGG
1 TATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATTCTGAGTCCTATATCCCTGGTCACTGGTGG
12276863 AATAGGTTCAAGATGGTAAGTCC
66 AATAGGTTCAAGATGGTAAGTCC
12276886 TATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATTCTGAGTCCTATATCCCTGGTCACTGGTGG
1 TATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATTCTGAGTCCTATATCCCTGGTCACTGGTGG
12276951 AATAGGTTCAAGATGGTAAGTCC
66 AATAGGTTCAAGATGGTAAGTCC
12276974 TATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATTCTGAGTCCTATATCCCTGGTCACTGGTGG
1 TATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATTCTGAGTCCTATATCCCTGGTCACTGGTGG
12277039 AATAGGTTCAAGATGGTAAGTCC
66 AATAGGTTCAAGATGGTAAGTCC
12277062 TATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATTCTGAGTCCTATATCCCTGGTCACTGGTGG
1 TATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATTCTGAGTCCTATATCCCTGGTCACTGGTGG
12277127 AATAGGTTCAAGATGGTAAGTCC
66 AATAGGTTCAAGATGGTAAGTCC
* * * * * ** * * *
12277150 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATTTTATCTCCCTGGTCAGTAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATTCTGAGTCCTATATCCCTGGTCACTGGTGG
* * *
12277215 AAT-GATTTGAAGATTGTAAGTCC
66 AATAG-GTTCAAGATGGTAAGTCC
* *
12277238 TATC-CCCTAGTCAGCAGTGGAATAGATTGAGGATTCTGAGTCCTATATCCCTGGTCACTGGTGG
1 TATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATTCTGAGTCCTATATCCCTGGTCACTGGTGG
12277302 AATAGGTTCAAGATGGTAAGTCC
66 AATAGGTTCAAGATGGTAAGTCC
12277325 TATCTCCCTGGTCAGCAGTGGAAT
1 TATCTCCCTGGTCAGCAGTGGAAT
12277349 AGGTGAATCC
Statistics
Matches: 433, Mismatches: 27, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
87 73 0.17
88 360 0.83
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (88 bp):
TATCTCCCTGGTCAGCAGTGGAATCGATTGAGGATTCTGAGTCCTATATCCCTGGTCACTGGTGG
AATAGGTTCAAGATGGTAAGTCC
Found at i:12277360 original size:34 final size:34
Alignment explanation
Indices: 12277322--12277386 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
12277312 AGATGGTAAG
* *
12277322 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
1 TCCTATCTCCCTGGTCACCAGTAGAATAGGTGAA
12277356 TCCTATCTCCCTGGTCACCAGTAGAATAGGT
1 TCCTATCTCCCTGGTCACCAGTAGAATAGGT
12277387 TGAAGATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTGGTCACCAGTAGAATAGGTGAA
Found at i:12277407 original size:78 final size:78
Alignment explanation
Indices: 12277278--12277430 Score: 209
Period size: 78 Copynumber: 2.0 Consensus size: 78
12277268 GGATTCTGAG
** * * *
12277278 TCCTATATCCCTGGTCACTGGTGGAATAGGTTCAAGATGGTAAGTCCTATCTCCCTGGTCAGCAG
1 TCCTATATCCCTGGTCACCAGTAGAATAGGTTCAAGATGGTAAGTCCTATCTCCCTGGACAGCAA
*
12277343 TGGAATAGGTGAA
66 CGGAATAGGTGAA
* * *
12277356 TCCTATCTCCCTGGTCACCAGTAGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGACAGCA
1 TCCTATATCCCTGGTCACCAGTAGAATAGGTTCAAGATGGT-AAGTCCTATCTCCCTGGACAGCA
12277420 ACGGAATAGGT
65 ACGGAATAGGT
12277431 TGAAGATTGT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 63 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (78 bp):
TCCTATATCCCTGGTCACCAGTAGAATAGGTTCAAGATGGTAAGTCCTATCTCCCTGGACAGCAA
CGGAATAGGTGAA
Found at i:12277689 original size:298 final size:297
Alignment explanation
Indices: 12277285--12280970 Score: 1384
Period size: 298 Copynumber: 12.4 Consensus size: 297
12277275 GAGTCCTATA
* * * * *
12277285 TCCCTGGTCACTGGTGGAATAGGTTCAAGATGGTAAGTCCTATCTCCCTGGTCAGCAGTGGAA-T
1 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGAAATT
* * * *
12277349 AGGTGAATCCTATCTCCCTGGTCACCAGTAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGG
66 ATGTGAATCCTATCTCCCTAGTCAACAGTGGAATA-GTTGAAGATTGTGAATCCTATCTCCCTGG
* ** * *
12277414 ACAGCAACGGAATAGGTTGAAGATTGTGAATCCTATGTTCCTGAGCAGCAGTGGAGTAGGTTGAA
130 TCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAA
* * * *
12277479 AATTAGAGATCTTATCTCCCAAGGCAGTAGTGGAGCAAATCGAAGACGGCGAATCTTACCTTCCC
195 AATTACAGATCTTATCTCCCAA-GCAGTAGTAGAGCAAATCGAAGACGGCGATTCTTATCTTCCC
* *
12277544 AAGGTAGTAGGAAAGAAGATTTAACCCACTAGCCTTATC
259 AAGGTAGTAGGAAAGCAGATTTAAGCCACTAGCCTTATC
* * * *
12277583 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGCAGTCAAATT
1 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGAAATT
* **
12277648 A-GTGAATCCTATCTCCCTTGTCAGTAGTGGAATATGTTGAAGATTGTGAATCCTATCTCCCTGG
66 ATGTGAATCCTATCTCCCTAGTCAACAGTGGAATA-GTTGAAGATTGTGAATCCTATCTCCCTGG
* * *
12277712 TCAGTAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAA
130 TCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAA
* * * * *
12277777 AATTACAGATCTTATCTCTCTAAGTAGTTGTAGAGCAGATCGAAGACGGCGATTCTTATATTCCC
195 AATTACAGATCTTATCTC-CCAAGCAGTAGTAGAGCAAATCGAAGACGGCGATTCTTATCTTCCC
* * * * *
12277842 AAGCTGGTAGGGAAGCAGATTTGAGTCACTAGCCTTATC
259 AAGGTAGTAGGAAAGCAGATTTAAGCCACTAGCCTTATC
* * * * * *
12277881 TCCCTCGTCAGTAATTGAACAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGTGGAATA
1 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT-GAA-A
* *
12277946 GGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAACAGTGG-A-A--T--AG---GTGAATACTAT
64 --TT----A-TGTGAATCCTATCTCCCTAGTCAACAGTGGAATAGTTGAAGATTGTGAATCCTAT
* *
12278002 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGTGCAGCAGTGGAGA
122 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGT
*
12278067 AGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCATATCGAAGACGGCGATTCTT
187 AGGTTGAAAATTACAGATCTTATCTCCC-AAGCAGTAGTAGAGCAAATCGAAGACGGCGATTCTT
* * * *
12278132 ATCTTCCCAAGGCAGTAGGCAAGCATATATAAGCCACTAGCCTTATC
251 ATCTTCCCAAGGTAGTAGGAAAGCAGATTTAAGCCACTAGCCTTATC
*
12278179 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCGTATCTCCCTGGTCAGCAGTGGAATA
1 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT-GAA-A
* * * * * *
12278244 GGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAATGGAATAGGATGAAGATTGT-ATGTCCA
64 --TT----A-TGTGAATCCTATCTCCCTAGTCAACAGTGGAATA-GTTGAAGATTGTGA-ATCCT
** * * * *
12278308 ATCTCATTGGTCTGCAGTGGAATAGG-TG-A-A---T---T-CTATCTCCCAG-GTTAGCAATGG
120 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGG
* * ** * ** * ** ** *
12278362 AATAGGTTGAAGATT-GTGAATCCTATCTCCCTGGTCAGTAATAGA--ATAGGCTGAAGATTGTG
184 AGTAGGTTGAAAATTACAG-ATCTTATCTCCCAAG-CAGTAGTAGAGCA-AATC-GAAGACGGCG
* * * * * *** * * * * * *
12278424 AATCCTATC-TCCC-TGAGCAGAAGTCGAGTAGGTTGAAAACTA-TAGATCTTATC
245 ATTCTTATCTTCCCAAG-GTAGTAGGAAAGCAGATT-TAAGCCACTAG-CCTTATC
**** ** * * ** * * * * *
12278477 TCCCAAACCAGTAGTGGACCAGATCGAAGACGGCGAA-TCTTATCTTCCCAAGGT-AGTACGGAA
1 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCCTATC-TCCC-TGGTCAG--CAG-T
* ** * * **
12278540 GAAGATTTAAGCCACTAGCCTTATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
60 GAA-A-TTATGTGA--ATCC-TATCTCCCT-AGTCAACAGTGGAATA-GTTGAAGATTGTGAA-T
* * * * *
12278604 CATATCTCCCTGGTCAGCAGT-GAA-A---T--AG---GTGAATCCTTTGTCCCTTG-TCAGTAG
117 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC-TGAGCAGCAG
* * * * * ** * ** ** * **
12278658 TGGAATAGGTTGAAGATTA-TGAGTCCTATCTCTCTGGTCAGCAGT-GTAATAGGTTGAAGATTG
181 TGGAGTAGGTTGAAAATTACAGA-TCTTATCTCCCAAG-CAGTAGTAG-AGCAAATCGAAGACGG
* * * ** * * * * ***** * *
12278721 TGAATCCTATC-TCCC-TCGTCAATAGTGAAA-TAGGTTGAAAATTGTGAATCC-TAGC
243 CGATTCTTATCTTCCCAAGGT-AGTAG-GAAAGCAGATTTAAGCCACT--AGCCTTATC
* * * * *
12278776 TCCCTGAG-CAGCAGTGGAGTAGGTTAAAAATTACAG-AAGT--TATCTCCC---TAAGCA--G-
1 TCCCTG-GTCAGTAGTGGAATAGGTTGAAGATT---GTAAGTCCTATCTCCCTGGTCAGCAGTGA
* * * ** *
12278831 ---TA-GT--A---TATCTCCCTGAG-CAGCAGTGGAGA-AGGTTAAAAATT-ACAGATCTTATC
62 AATTATGTGAATCCTATCTCCCT-AGTCAACAGTGGA-ATA-GTTGAAGATTGTGA-ATCCTATC
* * * * ** * * ** * * * * * *
12278884 TCCTTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCC-AATGTAGTAG-GGA
123 TCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATC-TCCCTGA-GCAGCAGTGG-
* * *** * * ** ** ** * ** ** *
12278946 AGTAGATT-TAAGCCACTAG-CCTTATCTCTCTGGTCAGTAGTAGAATAGGTTGAAGATTGTAAG
184 AGTAGGTTGAAAATTAC-AGATCTTATCTCCCAAG-CAGTAGTAGAGCAAATCGAAGACGGCGAT
* * * ** * * * **** *
12279009 TCCTATC-TCCC-TGGTCAGCAGTGGGA-TAGGTTGAAGATTGTGAGTCTTATC
247 TCTTATCTTCCCAAGGT-AGTAG-GAAAGCAGATTTAAGCCACT-AGCCTTATC
* ** * * * *
12279060 TCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTACAATCTCCCTGGTCAGCAGTGGAA-T
1 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGAAATT
* * * * * *
12279124 AGGTGAATCATATCTCCCTGGTCAGA-AGTGGACTTGGTTGAAGAGTGTGAATCCTATCTCCCTG
66 ATGTGAATCCTATCTCCCTAGTCA-ACAGTGGA-ATAGTTGAAGATTGTGAATCCTATCTCCCTG
* * * * * * *
12279188 GTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATGTCCTTGAGTAGCAGCGGAGTAGGTTGA
129 GTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGA
* * * * * *
12279253 AAATTAGAGATCTTATCTCCCAAAGCAGTAGTCGAGCAGATCGAAGAAGGCGAATCTTACCTTCC
194 AAATTACAGATCTTATCTCCC-AAGCAGTAGTAGAGCAAATCGAAGACGGCGATTCTTATCTTCC
* * *
12279318 CAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTATC
258 CAAGGTAGTAGGAAAGCAGATTTAAGCCACTAGCCTTATC
* * *
12279358 TCCCGGGTCAGTAGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGTGAAA-T
1 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGAAATT
* * ** *
12279422 AGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGG
66 ATGTGAATCCTATCTCCCTAGTCAACAGTGGAATA-GTTGAAGATTGTGAATCCTATCTCCCTGG
* * * * *
12279487 TCAGCGGTGTAATAGGTTGAAGATTGTGAATCGTATCTCCCTGAGCAACAGTGGAGTATGTTGAA
130 TCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAA
* * * *
12279552 AATTACAGATCCTATTTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCC
195 AATTACAGATCTTATCTCCC-AAGCAGTAGTAGAGCAAATCGAAGACGGCGATTCTTATCTTCCC
* * *
12279617 AAGGTAGTAGGGAAGCAGATATAAGCTACTAGCCTTATC
259 AAGGTAGTAGGAAAGCAGATTTAAGCCACTAGCCTTATC
* * * * *
12279656 TCCCTCGTAAGTAGTGGAATAGGTTGATGATTGTAAGTCCTATCTCCCTAGTCAACAGTGGAATA
1 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT-GAA-A
* * * **
12279721 GGTTGACGATTATGAGTCCTATCTCCCTAGTTAACAGTGGAATAGATTGAAGATTGT-AAGTCAA
64 --TT----A-TGTGAATCCTATCTCCCTAGTCAACAGTGGAATAG-TTGAAGATTGTGAA-TCCT
* * *
12279785 ATCTCCTTGGTCAGCAGTGG-A-A---T--AG---GTGAATCCTATCTCTCTG-GTTAGCAGTGG
120 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGG
* * * ** ** * * ** ** * ** *
12279839 AATAGGTTCAAGATT-GTGAAT-TCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGA
184 AGTAGGTTGAAAATTACAG-ATCT-TATCTCCCAAG-CAGTAGTAGAGCAAATCGAAGACGGCGA
* * * * * * * * *
12279902 ATCCTATC-TCCCTGACCA-GCAGT-GG--AGTAGGTTGAA--AATTATCGATCTTATC
246 TTCTTATCTTCCC--A--AGGTAGTAGGAAAGCAGATTTAAGCCACTA--G-CCTTATC
** * * * ** * * * *
12279954 TCCCAAAG-CAGTAGTGGAGTAGATCGAAGACGGCGAA-TCTTATCTTCCCAAGGT-AGTAG-GA
1 TCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCCTATC-TCCC-TGGTCAGCAGTG-
* * * * ** *
12280015 AAGAATATTTAAGCCACTCGCCTTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGT-ACG
61 AA-ATTATGT--G--AAT--CC-TATCTCCCTAGTCAACAGTGGAATA-GTTGAAGATTGTGA-A
* * * *
12280079 TCATATATCCCTGGTCAGCAGT-GAA-A---T--AG---GTGAATCCTATCTCCCTTG-TCAGTA
116 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC-TGAGCAGCA
* * ** * * ** * ** * ** *
12280133 GTGGAATAGGTTGAATATT-GTGAATCCTATCTCTCTGGTCAGTAATGTA-A-TAGGTTGTTGAT
180 GTGGAGTAGGTTGAAAATTACAG-ATCTTATCTCCCAAG-CAGT-A-GTAGAGCAAATCGAAGAC
* ** * * * * * * *** * * * *** * *
12280195 TGTAAATCCTAT-GTCCC-TGAGCAGCAGTTGAGTAGGTTGAAAATTACATA-TCGTATC
241 GGCGATTCTTATCTTCCCAAG-GTAGTAGGAAAGCAGATT-TAAGCCAC-TAGCCTTATC
* * * * * * * ** * * * * ** * * * *
12280252 TCTCTAAGT-AGTTGTAGAGTAGATCGAAGACGGCAATTCTTATATTCCCAAGCCGGTAGGGACG
1 TCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTAT-CTCCCTGGTCAGCAGTGA--
* * * ** *
12280316 CAGATT-TGAGCCACTAGCCTTATCTCCCTGGGTCAGTAGTGGAATAGGTTGAATATTGTGAATC
62 -A-ATTATGTG--A--ATCC-TATCTCCCT-AGTCAACAGTGGAATA-GTTGAAGATTGTGAATC
* * * * ** * * *
12280380 CTATCTCTCTGGTCAGTAATGTAATAGGTTGTTGATTGTAAATCCTATGTCCCTGAGCAGCAGTT
118 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTG
* * * * *
12280445 GAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGACCAGATCGAAGACGGCGAA
183 GAGTAGGTTGAAAATTACAGATCTTATCTCCC-AAGCAGTAGTAGAGCAAATCGAAGACGGCGAT
* * *
12280510 ACTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATC
247 TCTTATCTTCCCAAGGTAGTAGGAAAGCAGATTTAAGCCACTAGCCTTATC
*
12280561 TCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAA-
1 TCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGAAAT
* * ** *
12280625 TAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTG
65 TATGTGAATCCTATCTCCCTAGTCAACAGTGGAATA-GTTGAAGATTGTGAATCCTATCTCCCTG
* * * *
12280690 GTCAGCAGCGTAATAGGTTGAAGATTGTGAATCGTATCACCCTGAGCAGCAGTGGAGTAGGTTGA
129 GTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGA
* * * * **
12280755 AAATTATAGATCTTATCTCCCAAAGCAGTAGTGGACCAGATCGAAGACGGCGAAACTTATCTTCC
194 AAATTACAGATCTTATCTCCC-AAGCAGTAGTAGAGCAAATCGAAGACGGCGATTCTTATCTTCC
* *
12280820 CAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATC
258 CAAGGTAGTAGGAAAGCAGATTTAAGCCACTAGCCTTATC
*
12280860 TCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAA-
1 TCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGAAAT
* * * * **
12280924 TAGGTGAATCCTTTGTCCCTTGTCAGTAGTGGAATAGGTTGAAGATT
65 TATGTGAATCCTATCTCCCTAGTCAACAGTGGAATA-GTTGAAGATT
12280971 ATGANNNNNN
Statistics
Matches: 2636, Mismatches: 546, Indels: 411
0.73 0.15 0.11
Matches are distributed among these distances:
274 36 0.01
275 16 0.01
276 1 0.00
279 1 0.00
281 3 0.00
282 4 0.00
283 4 0.00
284 119 0.05
285 16 0.01
286 1 0.00
287 5 0.00
289 1 0.00
290 1 0.00
291 2 0.00
292 3 0.00
293 4 0.00
294 2 0.00
295 16 0.01
296 5 0.00
297 69 0.03
298 1420 0.54
299 567 0.22
300 38 0.01
301 23 0.01
302 6 0.00
303 5 0.00
304 2 0.00
305 6 0.00
306 6 0.00
307 11 0.00
308 114 0.04
309 87 0.03
310 41 0.02
311 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (297 bp):
TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGAAATT
ATGTGAATCCTATCTCCCTAGTCAACAGTGGAATAGTTGAAGATTGTGAATCCTATCTCCCTGGT
CAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAA
ATTACAGATCTTATCTCCCAAGCAGTAGTAGAGCAAATCGAAGACGGCGATTCTTATCTTCCCAA
GGTAGTAGGAAAGCAGATTTAAGCCACTAGCCTTATC
Found at i:12277931 original size:342 final size:341
Alignment explanation
Indices: 12277579--12278835 Score: 1140
Period size: 342 Copynumber: 3.7 Consensus size: 341
12277569 CCACTAGCCT
* * * * *
12277579 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGT-CATATCTCCCGGGTCAGCAGTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCATATCTCCCGAGTCAACAGTG
* * *
12277643 AAATTA-GTGAATCCTATCTCCCTTGTCAGTAGTGGAATATGTTGAAGATTGTGAATCCTATCTC
66 AAA-TAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
*
12277707 CCTGGTCAGTAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGG
130 CCTGGTCAGTAGTG-AATAGGTTGAAAATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGG
* * * * *
12277772 TTGAAAATTACAGATCTTATCTCTCTAAGTAGTTGTAGAGCAGATCGAAGACGGCGATTCTTATA
194 TTGAAAACTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTAT-
* * * * * * *
12277837 TTCCCAAGCTGGTAGGGAAGCAGATTTGAGTCACTAGCCTTATCTCCCTCGTCAGTAATTGAACA
258 TTCCCAAGGTAGTAGGGAAGAAGATTTGAGTCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATA
* *
12277902 GGTTGAAGGTTATAAGTCC
323 GGTTGAAGATTGTAAGTCC
* *
12277921 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCC-TATCTCCCTAGTCAACAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCATATCTCCCGAGTCAACAGTG
* *
12277985 GAATAGGTGAATACTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
66 AAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
* ** * * * *
12278050 CT-GTGCAGCAGTGGAGA-AGGTTGAAAATT-ACAGATCTTATCTCCCTAAGCAGTAGTAGAGCA
131 CTGGT-CAGTAGT-GA-ATAGGTTGAAAATTGTGA-ATCCTATCTCCCTGAGCAGTAGTGGAGTA
** * * ** * * ** ** * **
12278112 TATCGAAGACGGC-GATTCTTATCTTCCC-AAGGCAGTAGGCA-AGCATATATAAG-CCACTAGC
192 GGTTGAAAACTACAGA-TCTTATC-TCCCTAA-GCAGTA-GTAGAGCAGATCGAAGACGGCGAAT
* * * * ** * *
12278173 CTTATCTCCC-TGGTCAGTAGTGGAA-TAG-GTTGAAGAT-TGTAAGTCGTATCTCCCTGGTCAG
253 CTTATTTCCCAAGGT-AGTAG-GGAAGAAGATTTG-AG-TCACT-AGCCTTATCTCCCTGGTCAG
* * *
12278234 CAGTGGAATAGGTTGACGATTGTGAGTCC
313 TAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ** **
12278263 TATCTCCCTGGTCAACAATGGAATAGGATGAAGATTGTATGTCCA-ATCTCATTG-GTCTGCAGT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCATATCTC-CCGAGTCAACAGT
* * * * *
12278326 GGAATAGGTGAATTCTATCTCCCAGGTTAGCAATGGAATAGGTTGAAGATTGTGAATCCTATCTC
65 GAAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
* * * * *
12278391 CCTGGTCAGTAATAGAATAGGCTGAAGATTGTGAATCCTATCTCCCTGAGCAGAAGTCGAGTAGG
130 CCTGGTCAGTAGT-GAATAGGTTGAAAATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGG
* * * * *
12278456 TTGAAAACTATAGATCTTATCTCCCAAACCAGTAGTGGACCAGATCGAAGACGGCGAATCTTATC
194 TTGAAAACTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTAT-
* * *
12278521 TTCCCAAGGTAGTACGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGGTCAGTAGTGGAAT
258 TTCCCAAGGTAGTAGGGAAGAAGATTTGAGTCACTAGCCTTATCTCCCT-GGTCAGTAGTGGAAT
*
12278586 AGGTTGAAGATTGTAAGTCA
322 AGGTTGAAGATTGTAAGTCC
* ** * * * * *
12278606 TATCTCCCTGGTCAGCAGTGAAATAGG-TGAATCCTT-T--GTCCCT-TGT-CAGTAGTGGAATA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAA-GATTGTAAGTCCATATCTCCCG-AGT-CAACA
* * *
12278665 GGTTGAAGATTA--TGAGTCCTATCTCTCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCC
63 -G-TGAA-A-TAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12278728 TATCTCCCTCGTCAATAGTGAAATAGGTTGAAAATTGTGAATCCTAGCTCCCTGAGCAGCAGTGG
124 TATCTCCCTGGTCAGTAGTG-AATAGGTTGAAAATTGTGAATCCTATCTCCCTGAGCAGTAGTGG
* * **
12278793 AGTAGGTTAAAAATTACAGAAGTTATCTCCCTAAGCAGTAGTA
188 AGTAGGTTGAAAACTACAGATCTTATCTCCCTAAGCAGTAGTA
12278836 TATCTCCCTG
Statistics
Matches: 720, Mismatches: 155, Indels: 79
0.75 0.16 0.08
Matches are distributed among these distances:
338 1 0.00
340 14 0.02
341 39 0.05
342 425 0.59
343 231 0.32
344 8 0.01
345 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (341 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCATATCTCCCGAGTCAACAGTG
AAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
CTGGTCAGTAGTGAATAGGTTGAAAATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTT
GAAAACTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATTTC
CCAAGGTAGTAGGGAAGAAGATTTGAGTCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGT
TGAAGATTGTAAGTCC
Found at i:12278010 original size:78 final size:78
Alignment explanation
Indices: 12277920--12278064 Score: 256
Period size: 78 Copynumber: 1.9 Consensus size: 78
12277910 GTTATAAGTC
*
12277920 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGT-CAACAGT
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCT-GTGCAACAGT
12277984 GGAATAGGTGAATA
65 GGAATAGGTGAATA
*
12277998 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGTGCAGCAGTG
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGTGCAACAGTG
12278063 GA
66 GA
12278065 GAAGGTTGAA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
77 2 0.03
78 62 0.97
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (78 bp):
CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGTGCAACAGTG
GAATAGGTGAATA
Found at i:12278094 original size:122 final size:122
Alignment explanation
Indices: 12277877--12278096 Score: 277
Period size: 122 Copynumber: 1.8 Consensus size: 122
12277867 TCACTAGCCT
* * *
12277877 TATCTCCCTCGTCAGTAATTGAACAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTCGTCAGCAATGGAACAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGG
* **
12277942 AATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAACAGTGGAATAGGTGAATAC
66 AATAGGTTGAAAATTCAGAGTCCTATCTCCCTAGTCAACAGTGGAATAGGTGAATAC
* * * *
12277999 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCT-GTGCAGCAGT
1 TATCTCCCTCGTCAGCAATGGAACAGGTTGAAGATTAT-AAGTCCTATCTCCCTGGT-CAGCAGT
*
12278062 GGAGA-AGGTTGAAAATTACAGA-TCTTATCTCCCTA
64 GGA-ATAGGTTGAAAATT-CAGAGTCCTATCTCCCTA
12278097 AGCAGTAGTA
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
121 2 0.02
122 76 0.92
123 5 0.06
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (122 bp):
TATCTCCCTCGTCAGCAATGGAACAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGG
AATAGGTTGAAAATTCAGAGTCCTATCTCCCTAGTCAACAGTGGAATAGGTGAATAC
Found at i:12278409 original size:78 final size:79
Alignment explanation
Indices: 12278262--12278416 Score: 179
Period size: 78 Copynumber: 2.0 Consensus size: 79
12278252 ATTGTGAGTC
* * * * * *
12278262 CTATCTCCCTGGTCAACAATGGAATAGGATGAAGATTGTATGTCCAATCTCATTGGTCTGCAGTG
1 CTATCTCCCAGGTCAACAATGGAATAGGATGAAGATTGTATATCCAATCTCACTGGTCAGCAATA
12278327 GAATAGG-TGAATT
66 GAATAGGCTGAATT
* * * * * *
12278340 CTATCTCCCAGGTTAGCAATGGAATAGGTTGAAGATTGTGA-ATCCTATCTCCCTGGTCAGTAAT
1 CTATCTCCCAGGTCAACAATGGAATAGGATGAAGATTGT-ATATCCAATCTCACTGGTCAGCAAT
12278404 AGAATAGGCTGAA
65 AGAATAGGCTGAA
12278417 GATTGTGAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
78 58 0.92
79 5 0.08
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (79 bp):
CTATCTCCCAGGTCAACAATGGAATAGGATGAAGATTGTATATCCAATCTCACTGGTCAGCAATA
GAATAGGCTGAATT
Found at i:12278456 original size:122 final size:122
Alignment explanation
Indices: 12278219--12278456 Score: 291
Period size: 122 Copynumber: 2.0 Consensus size: 122
12278209 TTGTAAGTCG
* * * * *
12278219 TATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAATGG
1 TATCTCCCAGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAG
* * * * *
12278284 AATAGGATGAAGATTGTATGTCCAATCTCATTGGTCTGCAGTGGAATAGGTGAATTC
66 AATAGGATGAAGATTGTATATCCAATCTCACTGGTCAGAAGTCGAATAGGTGAATTC
* **
12278341 TATCTCCCAGGTTAGCAATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGTAATAG
1 TATCTCCCAGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAG
* * * *
12278406 AATAGGCTGAAGATTGTGA-ATCCTATCTCCCTGAG-CAGAAGTCGAGTAGGT
66 AATAGGATGAAGATTGT-ATATCCAATCTCACTG-GTCAGAAGTCGAATAGGT
12278457 TGAAAACTAT
Statistics
Matches: 97, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
122 95 0.98
123 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (122 bp):
TATCTCCCAGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAG
AATAGGATGAAGATTGTATATCCAATCTCACTGGTCAGAAGTCGAATAGGTGAATTC
Found at i:12278876 original size:64 final size:64
Alignment explanation
Indices: 12278775--12278899 Score: 214
Period size: 64 Copynumber: 2.0 Consensus size: 64
12278765 TGAATCCTAG
* *
12278775 CTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATTACAGAAGTTATCTCCCTAAGCAGTAGTATAT
1 CTCCCTGAGCAGCAGTGGAGAAGGTTAAAAATTACAGAACTTATCTCCCTAAGCAGTAGTATAT
* *
12278839 CTCCCTGAGCAGCAGTGGAGAAGGTTAAAAATTACAGATCTTATCTCCTTAAGCAGTAGTA
1 CTCCCTGAGCAGCAGTGGAGAAGGTTAAAAATTACAGAACTTATCTCCCTAAGCAGTAGTA
12278900 GAGCAGATCG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (64 bp):
CTCCCTGAGCAGCAGTGGAGAAGGTTAAAAATTACAGAACTTATCTCCCTAAGCAGTAGTATAT
Found at i:12279023 original size:44 final size:44
Alignment explanation
Indices: 12278968--12279937 Score: 374
Period size: 44 Copynumber: 22.7 Consensus size: 44
12278958 CCACTAGCCT
* * *
12278968 TATCTCTCTGGTCAGTAGTAGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12279012 TATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12279056 TATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTAC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12279100 AATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12279134 TATCTCCCTGGTCAGAAGTGGACTTGGTTGAAGAGTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12279178 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * *
12279222 TATGTCCTTGAGT-AGCAGCGGAGTAGGTTGAA-AAT-TAGAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * * ** * * ** * *
12279266 TATCTCCCAAAG-CAGTAGTCGAGCAGATCGAAGAAGGCGAA-TCT
1 TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * ****
12279310 TACCTTCCCAAGGT-AGCAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * *
12279353 TTATCTCCCGGGTCAGTAGTGGAATAGGTTGAAGACTGTAAGTCA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12279398 TATCTCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12279432 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12279476 TATCTCCCTGGTCAGCGGTGTAATAGGTTGAAGATTGTGAA-TCG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12279520 TATCTCCCTGAG-CAACAGTGGAGTATGTTGAA-AAT-TACAGATCC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * ** * * ** ** * *
12279564 TATTTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * * * **
12279608 TATCTTTCCAAGGT-AGTAG-GGAAGCAGATAT-AAGCTACT-AG-CC
1 TATC--TCCCTGGTCAGCAGTGGAA-TAGGT-TGAAGATTGTAAGTCC
* * * *
12279651 TTATCTCCCTCGTAAGTAGTGGAATAGGTTGATGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
12279696 TATCTCCCTAGTCAACAGTGGAATAGGTTGACGATTATGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
12279740 TATCTCCCTAGTTAACAGTGGAATAGATTGAAGATTGTAAGTCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12279784 AATCTCCTTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12279818 TATCTCTCTGGTTAGCAGTGGAATAGGTTCAAGATTGTGAA-TTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12279862 TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
** *
12279906 TATCTCCCTGACCAGCAGTGGAGTAGGTTGAA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAA
12279938 AATTATCGAT
Statistics
Matches: 691, Mismatches: 168, Indels: 134
0.70 0.17 0.13
Matches are distributed among these distances:
34 64 0.09
35 9 0.01
36 7 0.01
37 2 0.00
38 3 0.00
39 2 0.00
40 4 0.01
41 4 0.01
42 18 0.03
43 39 0.06
44 492 0.71
45 42 0.06
46 4 0.01
47 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:12279483 original size:78 final size:78
Alignment explanation
Indices: 12279354--12279503 Score: 221
Period size: 78 Copynumber: 1.9 Consensus size: 78
12279344 CCACTAGCCT
*
12279354 TATCTCCCGGGTCAGTAGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCCGGGTCAGTAGTGGAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGTGA
12279419 AATAGGTGAATCC
66 AATAGGTGAATCC
** * * *
12279432 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCGGTG
1 TATCTCCCGGGTCAGTAGTGGAATAGGTTGAAGACTAT-AAGTCATATCTCCCTGGTCAGCAGTG
*
12279496 TAATAGGT
65 AAATAGGT
12279504 TGAAGATTGT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
78 62 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (78 bp):
TATCTCCCGGGTCAGTAGTGGAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGTGA
AATAGGTGAATCC
Found at i:12279656 original size:386 final size:385
Alignment explanation
Indices: 12277877--12280009 Score: 1255
Period size: 386 Copynumber: 5.5 Consensus size: 385
12277867 TCACTAGCCT
* * * * * *
12277877 TATCTCCCTCGTCAGTAATTGAACAGGTTGAAGGTTAT-AAGTCCTATCTCCCTGGTCAGCAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGT-
* * *
12277941 GAATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAACAGTGGAATAGG-TG--AA-T---A-
64 GAATAGGTTGAAGATTGTGAATCCTATCTCCCT-GGCAACAGTGGAGTAGGTTGAAAATTCAGAT
* * * * * * ** * * ** * *
12277998 -CTATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATC--TCCCTGTGCAGC
128 CCTATCTCCCTAAG-CAGTAGTAGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGAGTAGC
* * * * * * *
12278059 AGTGGAGAAGGT-TGAAAATTAC-AGATCTTATCTCCCTAAGCAGTAGTAGAGCATATCGAAGAC
192 AGCGGAGAAGATAT--AAACTACTAGACCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAC
* * * * * * * *
12278122 GGCGATTCTTATCTTCCCAAGGCAGTAGGCAAGCATATATAAGCCACTAGCCTTATCTCCCTGGT
255 GGCGAATCTTATCTTCCCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCGGGT
*
12278187 CAGTAGTGGAATAGGTTGAAGATTGTAAGTCGTATCTCCCTGGTCAGCAGTGGAATAGGTTGACG
320 CAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT-GAA-A---T-A-G
*
12278252 ATTGTGAGTCC
378 ---GTGAATCC
* * * * ** *
12278263 TATCTCCCTGGTCAACAATGGAATAGGATGAAGATTGTATG--TCCAATCTCATTGGTCTGCAGT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGA-T-TATGAATCCTATCTCCCTGGTCAGCAGT
* * * * * * **
12278326 GGAATAGG-TG-A-A---T---T-CTATCTCCCAGGTTAGCAATGGAATAGGTTGAAGATTGTGA
64 -GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGG-CAACAGTGGAGTAGGTTGAAAATTCAG-
* * * * ** * * ** *
12278381 ATCCTATCTCCCT-GGTCAGTAATAGAATAG-GCTGAAGATTGTGAATCCTATC--TCCCTGAGC
126 ATCCTATCTCCCTAAG-CAGTAGTAGAGTAGATC-GAAGACGGCGAATCTTATCTTTCCAAGAGT
* * * * * *
12278442 AGAAGTC-GAGTAGGT-TGAAAACTA-TAGATCTTATCTCCCAAACCAGTAGTGGACCAGATCGA
189 AGCAG-CGGAGAAGATAT--AAACTACTAGACCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGA
* *
12278504 AGACGGCGAATCTTATCTTCCCAAGGTAGTACGGAAGAAGATTTAAGCCACTAGCCTTATCTCCC
251 AGACGGCGAATCTTATCTTCCCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCC
12278569 TGGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGT
316 -GGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGT
12278634 GAATCC
380 GAATCC
* * * * * *
12278640 TTTGTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAGTCCTATCTCTCTGGTCAGCAGTGT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTG-
* * * * **
12278705 AATAGGTTGAAGATTGTGAATCCTATCTCCCTCGTCAATAGTGAAATAGGTTGAAAATTGTGAAT
65 AATAGGTTGAAGATTGTGAATCCTATCTCCCT-GGCAACAGTGGAGTAGGTTGAAAATTCAG-AT
* * ** * *
12278770 CCTAGCTCCCTGAGCAGCAGTGGAGTAG-GTTAAAAATTACAGAAGTTATCTCCCTAAGCAGTAG
128 CCTATCTCCCT-A--AGCAGT--AGTAGAG-T--AGA-T-C-GAAG--A-C-GGCGAATC--T--
* * ** * * * * * * **
12278834 TATATCTCCCTGAGCAGCAGTGGAGAAGGTTAAAAATTAC-AGATCTTATCTCCTTAAGCAGTAG
174 TATCTTTCCAAGAGTAGCAGCGGAGAA-GATATAAACTACTAGACCTTATCTCCCAAAGCAGTAG
* * * * *
12278898 TAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAATGTAGTAGGGAAGTAGATTTAAGCCACT
238 TGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGCAGGGAAGAAGATTTAAGCCACT
* * * *
12278963 AGCCTTATCTCTCTGGTCAGTAGTAGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGC
303 AGCCTTATCTCCCGGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGC
* * *
12279028 AGTGGGATAGGTTGAAGATTGTGAGTCT
368 AGT--GA-A--AT--AG---GTGAATCC
* * * * * *
12279056 TATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGT-AAGTACAATCTCCCTGGTCAGCAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGTG
* * * * * *
12279120 GA-A---T--AG---GTGAATCATATCTCCCTGGTCAGA-AGTGGACTTGGTTGAAGAGTGTGA-
65 AATAGGTTGAAGATTGTGAATCCTATCTCCCTGG-CA-ACAGTGGAGTAGGTTGAA-AAT-TCAG
* * * * * * * * * * **
12279174 ATCCTATCTCCCT-GGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTA--TGTCCTTGAGTA
126 ATCCTATCTCCCTAAG-CAGTAGTAGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGAGTA
* * * * * *
12279236 GCAGCGGAGTAGGT-TGAAAATTA-GAGATCTTATCTCCCAAAGCAGTAGTCGAGCAGATCGAAG
190 GCAGCGGAGAAGATAT--AAACTACTAGACCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAG
* *
12279299 AAGGCGAATCTTACCTTCCCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCGG
253 ACGGCGAATCTTATCTTCCCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCGG
*
12279364 GTCAGTAGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAA
318 GTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAA
12279429 TCC
383 TCC
* * *
12279432 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCGGTGT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTG-
* *
12279497 AATAGGTTGAAGATTGTGAATCGTATCTCCCTGAGCAACAGTGGAGTATGTTGAAAATTACAGAT
65 AATAGGTTGAAGATTGTGAATCCTATCTCCCTG-GCAACAGTGGAGTAGGTTGAAAATT-CAGAT
* * * *
12279562 CCTATTTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAG-GTAGTA
128 CCTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGAGTAGCA
* * ** * ** * * * **
12279626 G-GGAAGCAGATATAAGCTACTAG-CCTTATCTCCC-TCGTAAGTAGTGGAATAGGTTGATGATT
193 GCGG-AGAAGATATAAACTACTAGACCTTATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGACG
* * * * * * * * **
12279688 G-TAAGTCCTATC-TCCCTA-GTCAACAGTGGAA-TAGGTTGACGATTA-TGAGTCC-TATCTCC
256 GCGAA-TCTTATCTTCCCAAGGT-AGCAG-GGAAGAAGATTTAAG-CCACT-AG-CCTTATCTCC
** * ** * * * *
12279747 CTAGTTAACAGTGGAATAGATTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGGAATAGGT
315 CGGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGT
12279812 GAATCC
380 GAATCC
* * * * * *
12279818 TATCTCTCTGGTTAGCAGTGGAATAGGTTCAAGATTGTGAATTCTATCTCCCTGGTCAGCAATAG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGT-G
* *
12279883 AATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATT-ATCGA
65 AATAGGTTGAAGATTGTGAATCCTATCTCCCTG-GCAACAGTGGAGTAGGTTGAAAATTCA--GA
* * * *
12279947 TCTTATCTCCCAAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAG-GTAG
127 TCCTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGAGTAG
12280010 TAGGAAAGAA
Statistics
Matches: 1392, Mismatches: 246, Indels: 218
0.75 0.13 0.12
Matches are distributed among these distances:
375 5 0.00
376 81 0.06
377 64 0.05
378 3 0.00
379 4 0.00
380 4 0.00
381 3 0.00
382 1 0.00
383 5 0.00
384 8 0.01
385 28 0.02
386 731 0.53
387 115 0.08
388 12 0.01
390 4 0.00
391 1 0.00
392 9 0.01
393 1 0.00
394 2 0.00
396 4 0.00
397 5 0.00
398 1 0.00
399 2 0.00
401 7 0.01
402 1 0.00
403 3 0.00
405 4 0.00
406 95 0.07
407 117 0.08
408 6 0.00
409 3 0.00
411 2 0.00
413 2 0.00
414 1 0.00
415 2 0.00
416 56 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (385 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGA
ATAGGTTGAAGATTGTGAATCCTATCTCCCTGGCAACAGTGGAGTAGGTTGAAAATTCAGATCCT
ATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGAGTAGCAGCG
GAGAAGATATAAACTACTAGACCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAA
TCTTATCTTCCCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCGGGTCAGTAG
TGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCC
Found at i:12279867 original size:78 final size:78
Alignment explanation
Indices: 12279737--12279889 Score: 200
Period size: 78 Copynumber: 2.0 Consensus size: 78
12279727 CGATTATGAG
* * *
12279737 TCCTATCTCCCTAGTTAACAGTGGAATAGATTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAG
1 TCCTATCTCCCTAGTTAACAGTGGAATAGATTCAAGATTGTAAGTCAAATCTCCCTGGTCAGCAA
*
12279802 TGGAATAGGTGAA
66 TAGAATAGGTGAA
* * * * * *
12279815 TCCTATCTCTCTGGTTAGCAGTGGAATAGGTTCAAGATTGTGAATTC-TATCTCCCTGGTCAGCA
1 TCCTATCTCCCTAGTTAACAGTGGAATAGATTCAAGATTGT-AAGTCAAATCTCCCTGGTCAGCA
12279879 ATAGAATAGGT
65 ATAGAATAGGT
12279890 TGAAGATTGT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 60 0.94
79 4 0.06
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (78 bp):
TCCTATCTCCCTAGTTAACAGTGGAATAGATTCAAGATTGTAAGTCAAATCTCCCTGGTCAGCAA
TAGAATAGGTGAA
Found at i:12279911 original size:122 final size:122
Alignment explanation
Indices: 12279693--12279933 Score: 277
Period size: 122 Copynumber: 2.0 Consensus size: 122
12279683 TGATTGTAAG
* * * * *
12279693 TCCTATCTCCCTAGTCAACAGTGGAATAGGTTGACGATTATGAGTCCTATCTCCCTAGTTAACAG
1 TCCTATCTCCCTAGTCAACAGTGGAATAGGTTCAAGATTATGAATCCTATCTCCCTAGTCAACAA
* * **
12279758 TGGAATAGATTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGGAATAGGTGAA
66 TAGAATAGATTGAAGATTGTAAGTCAAATCTCCCTGACCAGCAGTGGAATAGGTGAA
* * * * * * * *
12279815 TCCTATCTCTCTGGTTAGCAGTGGAATAGGTTCAAGATTGTGAATTCTATCTCCCTGGTCAGCAA
1 TCCTATCTCCCTAGTCAACAGTGGAATAGGTTCAAGATTATGAATCCTATCTCCCTAGTCAACAA
* ** *
12279880 TAGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGACCAGCAGTGGAGTAGGT
66 TAGAATAGATTGAAGATTGT-AAGTCAAATCTCCCTGACCAGCAGTGGAATAGGT
12279934 TGAAAATTAT
Statistics
Matches: 97, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
122 95 0.98
123 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (122 bp):
TCCTATCTCCCTAGTCAACAGTGGAATAGGTTCAAGATTATGAATCCTATCTCCCTAGTCAACAA
TAGAATAGATTGAAGATTGTAAGTCAAATCTCCCTGACCAGCAGTGGAATAGGTGAA
Found at i:12279954 original size:44 final size:44
Alignment explanation
Indices: 12279811--12279975 Score: 125
Period size: 44 Copynumber: 3.8 Consensus size: 44
12279801 GTGGAATAGG
* *** * * * *
12279811 TGAATCCTATCTCTCTGGTTAGCAGTGGAATAGGTTCAAGATTG
1 TGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTA
* ** * * * * *
12279855 TGAATTCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTG
1 TGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTA
12279899 TGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTA
1 TGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTA
* ** * *
12279943 TCG-ATCTTATCTCCCAAAGCAGTAGTGGAGTAG
1 T-GAATCCTATCTCCCTGACCAGCAGTGGAGTAG
12279976 ATCGAAGACG
Statistics
Matches: 101, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
44 100 0.99
45 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (44 bp):
TGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTA
Found at i:12280010 original size:386 final size:386
Alignment explanation
Indices: 12279370--12280109 Score: 1079
Period size: 386 Copynumber: 1.9 Consensus size: 386
12279360 CCGGGTCAGT
* *
12279370 AGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTAT
1 AGTGGAATAGATTGAAGACTGTAAGTCAAATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTAT
* * * **
12279435 CTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCGGTGTAAT
66 CTCCCTGGTCAGCAGTGGAATAGGTTCAAGATTATGAATCCTATCTCCCTGGTCAGCAATGTAAT
* * *
12279500 AGGTTGAAGATTGTGAATCGTATCTCCCTGAGCAACAGTGGAGTATGTTGAAAATTACAGATCCT
131 AGGTTGAAGATTGTGAATCCTATCTCCCTGACCAACAGTGGAGTAGGTTGAAAATTACAGATCCT
* * * * *
12279565 ATTTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAGGGA
196 ATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGAA
* * * *
12279630 AGCAGATATAAGCTACTAGCCTTATCTCCCTCGTAAGTAGTGGAATAGGTTGATGATTGTAAGTC
261 AGAAGATATAAGCCACTAGCCTTATCTCCCTCGTAAGGAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12279695 CTATCTCCCTAGTCAACAGTGGAATAGGTTGACGATTATGAGTCCTATCTCCCTAGTTAAC
326 ATATATCCCTAGTCAACAGTGAAATAGGTTGACGATTATGAGTCCTATCTCCCTAGTTAAC
* * *
12279756 AGTGGAATAGATTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGGAATAGGTGAATCCTAT
1 AGTGGAATAGATTGAAGACTGTAAGTCAAATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTAT
* * * *
12279821 CTCTCTGGTTAGCAGTGGAATAGGTTCAAGATTGTGAATTCTATCTCCCTGGTCAGCAATAG-AA
66 CTCCCTGGTCAGCAGTGGAATAGGTTCAAGATTATGAATCCTATCTCCCTGGTCAGCAAT-GTAA
*
12279885 TAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTATC-GATC
130 TAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAACAGTGGAGTAGGTTGAAAATTA-CAGATC
* * *
12279949 TTATCTCCCAAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGG
194 CTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGG
* * * * * *
12280014 AAAGAATATTTAAGCCACTCGCCTTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACG
259 AAAGAAGATATAAGCCACTAGCCTTATCTCCCTCGTAAGGAGTGGAATAGGTTGAAGATTGTAAG
* *
12280079 TCATATATCCCTGGTCAGCAGTGAAATAGGT
324 TCATATATCCCTAGTCAACAGTGAAATAGGT
12280110 GAATCCTATC
Statistics
Matches: 311, Mismatches: 41, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
386 309 0.99
387 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (386 bp):
AGTGGAATAGATTGAAGACTGTAAGTCAAATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTAT
CTCCCTGGTCAGCAGTGGAATAGGTTCAAGATTATGAATCCTATCTCCCTGGTCAGCAATGTAAT
AGGTTGAAGATTGTGAATCCTATCTCCCTGACCAACAGTGGAGTAGGTTGAAAATTACAGATCCT
ATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGAA
AGAAGATATAAGCCACTAGCCTTATCTCCCTCGTAAGGAGTGGAATAGGTTGAAGATTGTAAGTC
ATATATCCCTAGTCAACAGTGAAATAGGTTGACGATTATGAGTCCTATCTCCCTAGTTAAC
Found at i:12280143 original size:684 final size:684
Alignment explanation
Indices: 12278836--12280386 Score: 2280
Period size: 684 Copynumber: 2.3 Consensus size: 684
12278826 AGCAGTAGTA
* * * *
12278836 TATCTCCCTGAGCAGCAGTGGAGAAGGTTAAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAG
* *
12278901 AGCAGATCGAAGACGGCGATTCTTATCTTCCCAATGTAGTAGGGAAGTAGATTTAAGCCACTAGC
66 AGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGC
* * * * *
12278966 CTTATCTCTCTGGTCAGTAGTAGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
131 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGATGATTGTAAGTCCTATCTCCCTAGTCAACAGT
* * * * * *
12279031 GGGATAGGTTGAAGATTGTGAGTCTTATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAA
196 GGAATAGGTTGAAGATTATGAGTCCTATCTCCCTAGTCAACAGTGGAATAGATTGAAGATTGTAA
* *
12279096 GTACAATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGGACTTGG
261 GTACAATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGGAATAGG
* * *
12279161 TTGAAGAGTGTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATG
326 TTCAAGAGTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGACTGCGAATCCTATC
* **
12279226 TCCTTGAGTAGCAGCGGAGTAGGTTGAAAATTAGAGATCTTATCTCCCAAAGCAGTAGTCGAGCA
391 TCCCTGACCAGCAGCGGAGTAGGTTGAAAATTAGAGATCTTATCTCCCAAAGCAGTAGTCGAGCA
*
12279291 GATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTA
456 GATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGCAGGAAAGAAGATTTAAGCCACTAGCCTTA
* *
12279356 TCTCCCGGGTCAGTAGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGTGAAA
521 TCTCCCGGGTCAGGAGTGGAATAGGTTGAAGACTGTAAGTCATATATCCCTGGTCAGCAGTGAAA
12279421 TAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTG
586 TAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTG
** * *
12279486 GTCAGCGGTGTAATAGGTTGAAGATTGTGAATCG
651 GTCAGCAATGTAATAGGTTGAAGATTGTAAATCC
* * *
12279520 TATCTCCCTGAGCAACAGTGGAGTATGTTGAAAATTACAGATCCTATTTCCCTAAGCAGTAGTAG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAG
* * *
12279585 AGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAGGGAAGCAGATATAAGCTACTAGC
66 AGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGC
* *
12279650 CTTATCTCCCTCGTAAGTAGTGGAATAGGTTGATGATTGTAAGTCCTATCTCCCTAGTCAACAGT
131 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGATGATTGTAAGTCCTATCTCCCTAGTCAACAGT
* *
12279715 GGAATAGGTTGACGATTATGAGTCCTATCTCCCTAGTTAACAGTGGAATAGATTGAAGATTGTAA
196 GGAATAGGTTGAAGATTATGAGTCCTATCTCCCTAGTCAACAGTGGAATAGATTGAAGATTGTAA
* * * * *
12279780 GT-CAAATCTCCTTGGTCAGCAGTGGAATAGGTGAATCCTATCTCTCTGGTTAGCAGTGGAATAG
261 GTAC-AATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGGAATAG
* * * *
12279844 GTTCAAGATTGTGAATTCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTAT
325 GTTCAAGAGTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGACTGCGAATCCTAT
* ** * *
12279909 CTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTATCGATCTTATCTCCCAAAGCAGTAGTGGAGT
390 CTCCCTGACCAGCAGCGGAGTAGGTTGAAAATTAGAGATCTTATCTCCCAAAGCAGTAGTCGAGC
* * * * *
12279974 AGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGAAAGAATATTTAAGCCACTCGCCTT
455 AGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGCAGGAAAGAAGATTTAAGCCACTAGCCTT
* * *
12280039 ATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACGTCATATATCCCTGGTCAGCAGTGAA
520 ATCTCCCGGGTCAGGAGTGGAATAGGTTGAAGACTGTAAGTCATATATCCCTGGTCAGCAGTGAA
* * *
12280104 ATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAATCCTATCTCTCT
585 ATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCT
* **
12280169 GGTCAGTAATGTAATAGGTTGTTGATTGTAAATCC
650 GGTCAGCAATGTAATAGGTTGAAGATTGTAAATCC
* * * * * * *
12280204 TATGTCCCTGAGCAGCAGTTGAGTAGGTTGAAAATTACATATCGTATCTCTCTAAGTAGTTGTAG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAG
* * * *** * *
12280269 AGTAGATCGAAGACGGCAATTCTTATATTCCCAAGCCGGTAGGGACGCAGATTTGAGCCACTAGC
66 AGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGC
12280334 CTTATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAT-ATTGTGAA-TCCTATCTC
131 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTG-ATGATTGT-AAGTCCTATCTC
12280387 TCTGGTCAGT
Statistics
Matches: 770, Mismatches: 93, Indels: 7
0.89 0.11 0.01
Matches are distributed among these distances:
683 1 0.00
684 732 0.95
685 33 0.04
686 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (684 bp):
TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAG
AGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGC
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGATGATTGTAAGTCCTATCTCCCTAGTCAACAGT
GGAATAGGTTGAAGATTATGAGTCCTATCTCCCTAGTCAACAGTGGAATAGATTGAAGATTGTAA
GTACAATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGGAATAGG
TTCAAGAGTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGACTGCGAATCCTATC
TCCCTGACCAGCAGCGGAGTAGGTTGAAAATTAGAGATCTTATCTCCCAAAGCAGTAGTCGAGCA
GATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGCAGGAAAGAAGATTTAAGCCACTAGCCTTA
TCTCCCGGGTCAGGAGTGGAATAGGTTGAAGACTGTAAGTCATATATCCCTGGTCAGCAGTGAAA
TAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTG
GTCAGCAATGTAATAGGTTGAAGATTGTAAATCC
Found at i:12280174 original size:44 final size:44
Alignment explanation
Indices: 12280108--12280213 Score: 133
Period size: 44 Copynumber: 2.4 Consensus size: 44
12280098 AGTGAAATAG
* *
12280108 GTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAT-ATT
1 GTGAATCCTATCTCCCTGGTCAGTAATGGAATAGGTTG-ATGATT
* * *
12280152 GTGAATCCTATCTCTCTGGTCAGTAATGTAATAGGTTGTTGATT
1 GTGAATCCTATCTCCCTGGTCAGTAATGGAATAGGTTGATGATT
* *
12280196 GTAAATCCTATGTCCCTG
1 GTGAATCCTATCTCCCTG
12280214 AGCAGCAGTT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 1 0.02
44 52 0.98
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.38
Consensus pattern (44 bp):
GTGAATCCTATCTCCCTGGTCAGTAATGGAATAGGTTGATGATT
Found at i:12280185 original size:78 final size:78
Alignment explanation
Indices: 12280038--12280187 Score: 194
Period size: 78 Copynumber: 1.9 Consensus size: 78
12280028 CCACTCGCCT
* *
12280038 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACGTCATATATCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACATCATATATCCCTGGTCAGCAATGA
12280103 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * * * *
12280116 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGA-ATCCTATCTCTCTGGTCAGTAATG
1 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGT-ACATCATATATCCCTGGTCAGCAATG
*
12280180 TAATAGGT
65 AAATAGGT
12280188 TGTTGATTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
78 60 0.98
79 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (78 bp):
TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACATCATATATCCCTGGTCAGCAATGA
AATAGGTGAATCC
Found at i:12280616 original size:44 final size:43
Alignment explanation
Indices: 12280334--12280928 Score: 207
Period size: 44 Copynumber: 13.7 Consensus size: 43
12280324 AGCCACTAGC
*
12280334 CTTATCTCCCTGGGTCAGTAGTGGAATAGGTTGAATATTGTGAAT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGT-AAT
* * * * **
12280379 CCTATCTCTCTGGTCAGTAATGTAATAGGTTGTTGATTGTAAAT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAT
* * * * * * *
12280423 CCTATGTCCCTGAG-CAGCAGTTGAGTAGGTTGAAAATTATAGAT
1 CTTATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AT
** ** * * ** * *
12280467 CTTATCTCCCAAAG-CAGTAGTGGACCAGATCGAAGACGGCGAAA
1 CTTATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAT
* * * * **** **
12280511 CTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACTAGC
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAT
12280555 CTTATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAA-T
* * *
12280600 CATATCTCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AAT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAT
* * *
12280634 CCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAAT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAT
* * * *
12280678 CCTATCTCCCTGGTCAGCAGCGTAATAGGTTGAAGATTGTGAAT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAT
* * * * * *
12280722 CGTATCACCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTATAGAT
1 CTTATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AT
** ** * * ** * *
12280766 CTTATCTCCCAAAG-CAGTAGTGGACCAGATCGAAGACGGCGAAA
1 CTTATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAT
* * * * **** **
12280810 CTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACTAGC
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAT
12280854 CTTATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAA-T
* * *
12280899 CATATCTCCCTGGTCAGCAGTGAAATAGGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGT
12280929 GAATCCTTTG
Statistics
Matches: 403, Mismatches: 115, Indels: 65
0.69 0.20 0.11
Matches are distributed among these distances:
34 19 0.05
35 5 0.01
36 3 0.01
37 2 0.00
39 2 0.00
41 2 0.00
42 2 0.00
43 19 0.05
44 268 0.67
45 81 0.20
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (43 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAT
Found at i:12280629 original size:221 final size:221
Alignment explanation
Indices: 12280116--12280616 Score: 765
Period size: 221 Copynumber: 2.3 Consensus size: 221
12280106 AGGTGAATCC
*
12280116 TATCTCCCT-TGTCAGTAGTGGAATAGGTTGAATATTGTGAATCCTATCTCTCTGGTCAGTAATG
1 TATCTCCCTGGGTCAGTAGTGGAATAGGTTGAATATTGTGAATCCTATCTCTCTGGTCAGTAATG
*
12280180 TAATAGGTTGTTGATTGTAAATCCTATGTCCCTGAGCAGCAGTTGAGTAGGTTGAAAATTACATA
66 TAATAGGTTGTTGATTGTAAATCCTATGTCCCTGAGCAGCAGTTGAGTAGGTTGAAAATTACAGA
* * * * ** * *
12280245 TCGTATCTCTCTAAGTAGTTGTAGAGTAGATCGAAGACGGCAATTCTTATATTCCCAAGCCGGTA
131 TCGTATCTCCCAAAGCAGTAGTAGACCAGATCGAAGACGGCAATACTTATATTCCCAAGCCAGTA
* * *
12280310 GGGACGCAGATTTGAGCCACTAGCCT
196 GGGAAGAAGATTTAAGCCACTAGCCT
12280336 TATCTCCCTGGGTCAGTAGTGGAATAGGTTGAATATTGTGAATCCTATCTCTCTGGTCAGTAATG
1 TATCTCCCTGGGTCAGTAGTGGAATAGGTTGAATATTGTGAATCCTATCTCTCTGGTCAGTAATG
*
12280401 TAATAGGTTGTTGATTGTAAATCCTATGTCCCTGAGCAGCAGTTGAGTAGGTTGAAAATTATAGA
66 TAATAGGTTGTTGATTGTAAATCCTATGTCCCTGAGCAGCAGTTGAGTAGGTTGAAAATTACAGA
* * * **
12280466 TCTTATCTCCCAAAGCAGTAGTGGACCAGATCGAAGACGGCGAA-ACTTATCTTCCCAAGGTAGT
131 TCGTATCTCCCAAAGCAGTAGTAGACCAGATCGAAGACGGC-AATACTTATATTCCCAAGCCAGT
12280530 AGGGAAGAAGATTTAAGCCACTAGCCT
195 AGGGAAGAAGATTTAAGCCACTAGCCT
* * *
12280557 TATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCATATCTCCCTGGTCAG
1 TATCTCCCTGGGTCAGTAGTGGAATAGGTTGAATATTGTGAA-TCCTATCTCTCTGGTCAG
12280617 CAGTGAAATA
Statistics
Matches: 256, Mismatches: 22, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
220 11 0.04
221 243 0.95
222 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (221 bp):
TATCTCCCTGGGTCAGTAGTGGAATAGGTTGAATATTGTGAATCCTATCTCTCTGGTCAGTAATG
TAATAGGTTGTTGATTGTAAATCCTATGTCCCTGAGCAGCAGTTGAGTAGGTTGAAAATTACAGA
TCGTATCTCCCAAAGCAGTAGTAGACCAGATCGAAGACGGCAATACTTATATTCCCAAGCCAGTA
GGGAAGAAGATTTAAGCCACTAGCCT
Found at i:12280687 original size:78 final size:79
Alignment explanation
Indices: 12280557--12280707 Score: 234
Period size: 78 Copynumber: 1.9 Consensus size: 79
12280547 CCACTAGCCT
* *
12280557 TATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTG
1 TATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGCG
12280622 AAATAGGTGAATCC
66 AAATAGGTGAATCC
* *
12280636 TATCTCCCT-TGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGC
1 TATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTAT-AAGTCATATCTCCCTGGTCAGCAGC
*
12280699 GTAATAGGT
65 GAAATAGGT
12280708 TGAAGATTGT
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
78 55 0.83
79 11 0.17
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (79 bp):
TATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGCG
AAATAGGTGAATCC
Found at i:12280833 original size:520 final size:519
Alignment explanation
Indices: 12279834--12280917 Score: 1634
Period size: 520 Copynumber: 2.1 Consensus size: 519
12279824 TCTGGTTAGC
* *
12279834 AGTGGAATAGGTTCAAGATTGTGAATTCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTG
1 AGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTG
* *
12279899 TGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTATCGATCTTATCTCCCAAAGCA
66 TAAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCA
** * *
12279964 GTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGAAAGAATATTTAAGC
131 GTAGTGGACCAGATCGAAGACGGCGAAACTTATCTTCCCAAGGTAGTAGGAAAGAAGATTTAAGC
* *
12280029 CACTCGCCTTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACGTCATATATCCCTGGT
196 CACTAGCCTTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCATATATCCCTGGT
* *
12280094 CAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAATC
261 CAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATC
* * * ** ** *
12280159 CTATCTCTCTGGTCAGTAATGTAATAGGTTGTTGATTGTAAATCCTATGTCCCTGAGCAGCAGTT
326 CTATCTCCCTGGTCAGCAACGTAATAGGTTGAAGATTGTAAATCCTATCACCCTGAGCAGCAGTG
* * * * * **
12280224 GAGTAGGTTGAAAATTACATATCGTATCTCTCTAAGTAGTTGTAGAGTAGATCGAAGACGGCAAT
391 GAGTAGGTTGAAAATTACAGATCGTATCTCCCAAAGCAGTAGTAGACCAGATCGAAGACGGCAAT
* * * * *
12280289 TCTTATATTCCCAAGCCGGTAGGGACGCAGATTTGAGCCACTAGCCTTATCTCCCTGGGTCAGT
456 ACTTATATTCCCAAGCCAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGGTCAGT
* * * **
12280353 AGTGGAATAGGTTGAATATTGTGAATCCTATCTCTCTGGTCAGTAAT-GTAATAGGTTGTTGATT
1 AGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAG-AATAGGTTGAAGATT
* * *
12280417 GTAAATCCTATGTCCCTGAGCAGCAGTTGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGC
65 GTAAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGC
*
12280482 AGTAGTGGACCAGATCGAAGACGGCGAAACTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAG
130 AGTAGTGGACCAGATCGAAGACGGCGAAACTTATCTTCCCAAGGTAGTAGGAAAGAAGATTTAAG
* *
12280547 CCACTAGCCTTATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTG
195 CCACTAGCCTTATCTCCCT-GGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCATATATCCCTG
12280612 GTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA
259 GTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA
* * *
12280677 TCCTATCTCCCTGGTCAGCAGCGTAATAGGTTGAAGATTGTGAATCGTATCACCCTGAGCAGCAG
324 TCCTATCTCCCTGGTCAGCAACGTAATAGGTTGAAGATTGTAAATCCTATCACCCTGAGCAGCAG
* * *
12280742 TGGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGACCAGATCGAAGACGGCG
389 TGGAGTAGGTTGAAAATTACAGATCGTATCTCCCAAAGCAGTAGTAGACCAGATCGAAGACGGC-
* **
12280807 AA-ACTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGGTCA
453 AATACTTATATTCCCAAGCCAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGGTCA
12280871 GT
518 GT
*
12280873 AGTGGAATAGGTTGAAGATTGT-AAGTCATATCTCCCTGGTCAGCA
1 AGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCA
12280918 GTGAAATAGG
Statistics
Matches: 505, Mismatches: 56, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
518 1 0.00
519 195 0.39
520 307 0.61
521 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (519 bp):
AGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTG
TAAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCA
GTAGTGGACCAGATCGAAGACGGCGAAACTTATCTTCCCAAGGTAGTAGGAAAGAAGATTTAAGC
CACTAGCCTTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCATATATCCCTGGT
CAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATC
CTATCTCCCTGGTCAGCAACGTAATAGGTTGAAGATTGTAAATCCTATCACCCTGAGCAGCAGTG
GAGTAGGTTGAAAATTACAGATCGTATCTCCCAAAGCAGTAGTAGACCAGATCGAAGACGGCAAT
ACTTATATTCCCAAGCCAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGGTCAGT
Found at i:12281337 original size:44 final size:44
Alignment explanation
Indices: 12281265--12289121 Score: 1111
Period size: 44 Copynumber: 183.9 Consensus size: 44
12281255 CCACTAGCCT
* * * * *
12281265 TATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12281309 TATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12281353 TATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTAC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12281397 AATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12281431 TATCTCCCTGGTCAGAAGTGGACTTGGTTGAAGAGTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12281475 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * * *
12281519 TATATCCTTGAGT-AGTAGTGGAGTAGGTTGAAAATT-AAAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTAAG-TCC
** * ** * * ** * *
12281563 TATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGAAGGCGAA-TCT
1 TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * * ****
12281607 TACCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * *
12281650 TTATCTCCCTGGTCAGTAGTGCAATAGGTTGAAGACTGTAAGTCA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12281695 TATCTCCCTGGTCAGCAGT-GAA-A---T--AG---GTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * *
12281729 TATCTCCCTTGTCAGTAGTGCAATAGGTTGAAGATTATGATTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12281773 TATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-TCG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12281817 TATCTCCCTGAG-CAGCAGTGGAGTATGTTGAA-AAT-TACAGATCC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * ** * * ** ** * *
12281861 TATTTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ****
12281905 TATCTTTCCAAT-GT-AGTAG-GGAAGCAGATAT-AAGCCACT-AG-CC
1 TATC--TCC-CTGGTCAGCAGTGGAA-TAGGT-TGAAGATTGTAAGTCC
* *
12281948 TTATCTCCCTGGT-AACTAGTGGAATAGGTTGATGATTGTAAGTCC
1 -TATCTCCCTGGTCAGC-AGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12281993 TATCTCCCTAGTCAGCAGTGGAATAGGTTGACGATTATGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12282037 TATCTCCCTGGTTAACAGTGGAATAGATTGAAGATTGTAAGTCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12282081 AATCTCCTTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12282115 TATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12282159 TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * * * *
12282203 TATCTCCCTTAGAGATCTTATCTCCCAAAGCAGTA-GTGGAACAGA-TG-AAGACGGC
1 TATCTCCC-T-G-G-TC--A----GCAGTGGAATAGGTTG-A-AGATTGTAAGTC--C
* ** * * * *
12282258 GAATCTTATCT--TC-CCAAG-GTAGTAGG--GAAGAATATTTAAGCCACTCGCC
1 -TATCT-CCCTGGTCAGC-AGTGGAATAGGTTGAAG-AT-TGTAAG----T--CC
* *
12282307 TTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12282352 TATCTCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12282386 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * ** *
12282430 TATCTCTCTGGTCAGTAGTGTAATAGGTTGTTGATTGTAAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12282474 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * ** * ** * * ** ** * *
12282518 TATCTCTCTAAGT-AGTTGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * * ** ****
12282562 TATATTCCTAAG-CTGGTAG-GGAAGCAAATTTG-AGCCACT-AG-CC
1 TATCTCCCT-GGTC-AGCAGTGGAA--TAGGTTGAAGATTGTAAGTCC
* * * * *
12282605 TTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12282650 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12282694 TATCTCCCTAGTCAACAGTGGAATAGG-TG-A-A---T-A---C
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12282728 TCTCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
12282772 TATCTCCCTAAG-CAGCAGTCGAGTAGGTTG-AGAAT-TATAGATCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * ** * * ** * *
12282816 TATCTCCCAAAG-CAGTAGTGGACCAGATCGAAGACGGCGAA-TCT
1 TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * ****
12282860 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
12282903 TTATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12282949 TATCTCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * * *
12282983 TTTGTCCCTTGTTAGTAGTGGAATAGGTTGAAGATTATGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
12283027 TTTCTCTCTAGTCAACAGTGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * *
12283071 TATCTCCCTCGTCAATAGTGAAATAGGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12283115 TAGCTCCCTGAG-CAGCAGTGGAGTAGGTTAAAAATTACAG-AAGT--
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATT---GTAAGTCC
* * * * * * * * *
12283159 TATCTCCCTAAG-CAGTAGTAGAGTAGATCGAAGA-GGCGAA-TCA
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * * * **** * *
12283202 TATATTCCCAAGGT-AGTAG-AGAAGCAGATTTAAGCCACT-AGGCT
1 TAT-CTCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * * * *
12283246 TATCTTCATTGTCAGTAGCGGAATAGGTTGACGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * *
12283290 TATCTCTCTAGTCAGTAGTAGAATAGGCTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
12283334 TATATCCCTGAG-CAGCAATGGAGTAGGTTGCAA-ATTATAAATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTG-AAGATTGTAAGTCC
* * * * ** * * * ** * *
12283378 TATCTCCTTAAG-CAGTAGTAGAGCAGATCGAAGATGGCGATTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ****
12283422 TATCTTCCCAGGGT-AGTAG-GGAAATAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGG-AATAGGTTGAAGATTGTAAGTCC
* * *
12283465 TTATCTCCCTGGTCAGTAGTAGAATAGGTGGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12283510 TATCCCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12283554 TATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTAC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12283598 AATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12283632 TATCTTCCTGGTCAG-AGGTGGACTTGGTTGAAGAGTGTGAA-TCC
1 TATCTCCCTGGTCAGCA-GTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12283676 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * *
12283720 TATGTCCTTGAGT-AGCAGTGGAGTAGGTTGAA-AAT-TAGAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * ** * * ** * *
12283764 TATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGAAGGCGAA-TCT
1 TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * * ****
12283808 TACCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * *
12283851 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATAAGTCA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12283896 TATCTCCCTGGTCAGCAGT-G-A-A--TT--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12283930 TATCTCCCTTGTCAGTACTGGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12283974 TATCTCCCTGGTCAGCGGTGTAATAGGTTGTAGATTGTAAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12284018 TATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * * ** * * * * * *
12284062 TAACTCTCTAAGT-AGTAGTAGAGCAGATCGAAGA-CGGAGATTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTA-AGTCC
* ** * * * * ****
12284106 TATATTCCCAAG-CTGGTAG-GGAAGCAGATTTG-AGCCACT-AG-CC
1 TAT-CTCCCTGGTC-AGCAGTGGAA-TAG-GTTGAAGATTGTAAGTCC
* * * * * *
12284149 TTATCTCCCTGGTCAGTAATGGAACAGGTTAAAGGTTATAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12284194 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12284238 TATCTCCCTGGTCAACAATGG-A-A---T--AG-CTG-AA-TCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12284272 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12284316 TATCTCCCTGAG-CAGCAGTGGAGA-AGGTT-AAAAAT-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGA-ATAGGTTGAAGATTGTA-AG-TCC
* * * * ** * * * ** ** * *
12284360 TATCTCCTTAAG-CAGTAGTAGAGCAGATCGAATACGGCGATTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * * ****
12284404 TATCTTCTCAAGGT-AGCAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TC-CCTGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
12284447 TTATCTCCCCGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
12284492 TGTCTCCCTAGTCAGCAGTGGTATAGGTTGAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12284536 TATCACCCAGGTCAACAGTGGAATAGGTCGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
12284580 TATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12284614 GATCTCCCTGGTGAGCAGTAGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12284658 TATCTCCATGGTCAGCAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
12284702 TATGTCCCTGAG-CACCAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * * * ** * *
12284746 TATCTCCCAAAG-CAGTAGTGGAACA-GATGAAGACGGCGAA-TCT
1 TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * ** ** ****
12284789 TATCTTCCCAAGGT-AGTAG-GGAAGAAAATTTCAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
12284832 TTATCTCCCTGGTCAGTAGTGGAATA----G--G--TG-AA-TCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12284867 GATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGCAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12284911 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12284955 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAACTCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
12284999 TATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12285033 CATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12285077 TATCTCCCTGGTCAGTAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12285111 GATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTTTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12285155 TATCTCCCTGGTCAGTAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12285199 TATCTGCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* ** * * * * * *
12285243 TATCGCCCAAAG-CAGTAGTGGAACA-GATGAAGATGGCGAA-TCT
1 TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * ** **** *
12285286 TATCTTCCCATGGT-AGTAG-GGAAGAAGATTTCAGCCACT-AGTCT
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
12285330 TATCTCCCTGGTCAGTAGTGGAATAGGTTGGAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12285374 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12285418 TATATCCCTGAG-CAGCAGTGGAGTAGG-T-----TTGTAAGTCC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12285456 TATCTCCCTGGTCAGCAATGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12285490 TATCTCCCTGGTCACCAGTGGAATAGGTTCAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12285534 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAA-TCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * * * *
12285578 TATGTTTCTCAG-CAGCAGTGGAGTAGGTTGAA-AAT-TAGAGATCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * ** * * ** *
12285622 TATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGACGGTGAA-TCT
1 TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * * ****
12285666 TACCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAG-CCACAAG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
12285709 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12285754 TATCTCCCGGGTCAGCAGT-CAA-A--TT--AG--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12285788 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12285832 TATCTCCCTGGTCAGCTGT-G--TA--AT-AAGATTGTGAA-TCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * * * * * **** *
12285870 TATATTCCGAAGGT-AGTAG-AGAAGCAGATTTAAGCCACT-AGTCT
1 TAT-CTCC-CTGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * * * *
12285914 TATCTTCATTGTCAGTAGTGCAATAGGTTGACGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12285958 TATCTCCCTAGTCAGCAGTGGAATAGGCTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12286002 TATATCCCTGAG-CAGCAGTGGAGTAGGTTGCAA-ATTAT-AGATCA
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTG-AAGATTGTAAG-TCC
* * * ** * * * **
12286046 TATCTCCCT-ATGCAGTAGTAGAGCAGATCT-AAGA-CG-ACGGTTGT
1 TATCTCCCTGGT-CAGCAGTGGAATAGGT-TGAAGATTGTA-AG-TCC
* * * * ****
12286090 TATCTTCCCAAGGT-AGTAG-GGAAGTAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
12286133 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGAATGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12286178 TATCTCCCTAGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12286222 TATCTCCCTGGT-ATCAATGGAATAGGTTGAAGATTGTAAGTAC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12286265 TATCTCCCTGGTCAGCAATGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12286299 TATCTCCCTGGTCAGCAGTGGACTTGGTTTAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12286343 TATCTCCCTGGTCAGCAATGGAATAGGTTAAAGA--CTAAGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAG--TCC
* * * * * ** * *
12286387 TATGTCCTTGAG-CAGCAGTGGAGTACGTTGAAAATTACAAATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * * * *** *
12286431 TATCTCCCAAAG-CAGTAGTAGG-GTAGATTTAAGACACT--GGCC
1 TATCTCCC-TGGTCAGCAGT-GGAATAGGTTGAAGATTGTAAGTCC
* ** *** * *
12286473 TTATATCCCTATTCTTTAGTGGAATAGGTTGAAGATTTTAAGTCT
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12286518 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12286562 TATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12286606 TATCTCCCTGGTCAGCAATGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12286640 TATCTCCCTAGCCAGCAGTGGAATAGGTT-AGAGATTTTGAG--C
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGA-AGATTGTAAGTCC
* ** * * * *
12286682 -A-GT-AGTGG--AGTAGGTTGAA-A-ATT-ACAGA---T-C---C
1 TATCTCCCTGGTCAGCA-GTGGAATAGGTTGA-AGATTGTAAGTCC
* * ** * * ** ** * *
12286713 TATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAGACAGCGATTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * * * ****
12286757 TATATTCCCAAGGT-AGTA-AGGAAGCAGATTTAAGCCACT-AG-CC
1 TAT-CTCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
12286800 TTATCTCCCTGGTCGGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12286845 TATCTCCCTAGTCAGCAGTGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12286879 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12286923 AATCTCCCTGAG-CAGTAGTGGAGA-AGGTTGCAA-ATTAT-AGAT-C
1 TATCTCCCTG-GTCAGCAGTGGA-ATAGGTTG-AAGATTGTAAG-TCC
* ** * ** * * * * * *
12286966 TGATCTCCCTAAG-CATTAGTAGAGCAGATCGAACA-CG-ACGATTCT
1 T-ATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTA--AGTCC
* * * * * ****
12287011 TATATTCCCAAGGT-AGTA-AGGAAGTAGACTT-AAGCCACT-AG-CC
1 TAT-CTCCC-TGGTCAGCAGTGGAA-TAG-GTTGAAGATTGTAAGTCC
* * * * *
12287054 TTATTTCACTGGTTAGTAGTGGAATAGGTTGAAGATTGTAAGTCT
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * **
12287099 TATCTCCATGGTCAGCAGTGGAATAGATTGAAGATTGCGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
** ** * *
12287143 TATCTCCCTCATCAATAGTGAAATAGGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
12287187 T-TGCTCCCTGAG-CAGCAGTGGAGTAGATTAAAAACTACAG-AAGT--
1 TAT-CTCCCTG-GTCAGCAGTGGAATAGGTTGAAGA-T--TGTAAGTCC
* * * * * * ** * *
12287231 TATCTCCCTAAG-CAGTAGTAGAGTAGATCGAAGACGGCGAA-TCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * ****
12287275 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * *
12287318 TTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12287363 TATCTCCCAGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12287397 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
12287441 TATCTCTCTGGTCAGTAGTGTAATAGGTTGTATATTGTAAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
12287485 TATCTCCCTAAG-CAGCAGTGTAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * * * * * * ** * *
12287529 TATCTCCCAAAG-CAGTAGTAGAGTAGATCGAAGATAGCGATTCT
1 TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ** ****
12287573 TATCTTCCCAAGGT-AGTAG-GCAAGCATATAT-AAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGT-TGAAGATTGTAAGTCC
* * * *
12287616 TTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCG
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12287661 TATCTCCCTGGTCAGCAGTGGAATAGGATGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12287705 TATCTCCCTGGTCAGCAGTGGAATA----G--G--T-CAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
12287739 TATCTCCCTGGTCA-CTAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGC-AGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12287783 TATCTCCCTTGTCAGCAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12287827 TATGTTCCTGAG-CAGCAGTGGAGTAGGTTGAA-ATT-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * ** * * ** * *
12287871 TATCT-CTTAAAG-CAATAGTGGAACA-GATGAAGACGGCGAA-TCT
1 TATCTCCCT--GGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * ****
12287914 TATCTTCCCAAGGT-AGTAG-GGAAGGAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * *
12287957 TTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12288002 TATCTCCCAGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* **
12288036 TATCTCCCTTGTCAGTTGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * * *
12288080 TATCTCTCTAGTCAGTAATGTAATAGGTTGTAGATTGTAAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * ** * *
12288124 TATCTCCCTAAG-CAGTAGTGGAGA-AGGTTGAAAATTACAAATCT
1 TATCTCCCT-GGTCAGCAGTGGA-ATAGGTTGAAGATTGTAAGTCC
** * * * * * ** ** * *
12288168 TATCTCCCAAAG-CAGTAGTAGACTAGATCGAAGACGGCGATTCT
1 TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * ****
12288212 TAACTTCCCAAGGT-AGCAG-GGAAGCAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
12288255 TTATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * ** * *
12288300 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAAATTACAAATCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * ** ** * *
12288344 TATCTCCCTAAG-CAGTAGTAGAGTAGATTGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*** * * * **** *
12288388 TATCTTCACAAAGT-AGTAG-GGAAGTAGATTTAAGCCACT-AGTCT
1 TATC-TC-CCTGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * *
12288432 TATCTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAGGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * **
12288476 TATCTCCATGGTTAGCAGTGGAATAGGTTGAAGATTGCGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*** ** * * *
12288520 TATCTCCCTCACCAATAGTGAAATAGGTTTAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
12288564 TAGCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TAGAGATCC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
**** * ** * * * *
12288608 TATCTCCCAAAACAGTAGTGGAGCAGATCGAAGATGGTGAA-TCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * * * * ****
12288652 TACCTTTCCAAGGT-AGTAG-GGAAGAATGTTTAAGCCACT-AG-CC
1 TA--TCTCCCTGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
12288695 TTATCTCCCTGGTCCGTAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12288740 TATCTCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12288774 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12288818 TATCTCCC-GAGTAAGCAGTGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12288862 TATCTCCCTGAG-CAGCAGTGGAGTATGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * ** * * * * *
12288906 TATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAGA-CG-ACGATTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTA--AGTCC
** * * * ** ***
12288950 TATCTTTCCAAGGT-AGTAG-GGAAGCAGATTTCAGACACT-AG-CC
1 TATC--TCCCTGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
12288993 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12289038 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12289082 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAA
12289122 NNNNNNNNNN
Statistics
Matches: 5668, Mismatches: 1439, Indels: 1412
0.67 0.17 0.17
Matches are distributed among these distances:
31 1 0.00
32 1 0.00
33 4 0.00
34 484 0.09
35 68 0.01
36 54 0.01
37 32 0.01
38 73 0.01
39 28 0.00
40 31 0.01
41 37 0.01
42 164 0.03
43 558 0.10
44 3585 0.63
45 443 0.08
46 36 0.01
47 10 0.00
48 4 0.00
49 5 0.00
50 5 0.00
51 14 0.00
52 4 0.00
53 8 0.00
54 9 0.00
55 4 0.00
56 5 0.00
57 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Done.