Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 36 of 79
Found at i:12281743 original size:34 final size:34
Alignment explanation
Indices: 12281690--12281756 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
12281680 GAAGACTGTA
12281690 AGTCATATCTCCCTGGTCAGCAGTGAAATAGGTG
1 AGTCATATCTCCCTGGTCAGCAGTGAAATAGGTG
* * * *
12281724 AGTCCTATCTCCCTTGTCAGTAGTGCAATAGGT
1 AGTCATATCTCCCTGGTCAGCAGTGAAATAGGT
12281757 TGAAGATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (34 bp):
AGTCATATCTCCCTGGTCAGCAGTGAAATAGGTG
Found at i:12281780 original size:78 final size:78
Alignment explanation
Indices: 12281651--12281800 Score: 237
Period size: 78 Copynumber: 1.9 Consensus size: 78
12281641 CCACTAGCCT
*
12281651 TATCTCCCTGGTCAGTAGTGCAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGCAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGTGA
12281716 AATAGGTGAGTCC
66 AATAGGTGAGTCC
* * * * * *
12281729 TATCTCCCTTGTCAGTAGTGCAATAGGTTGAAGATTATGATTCCTATCTCCCTGGTCAGCAGTGT
1 TATCTCCCTGGTCAGTAGTGCAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGTGA
12281794 AATAGGT
66 AATAGGT
12281801 TGAAGATTGT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 65 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGCAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGTGA
AATAGGTGAGTCC
Found at i:12281800 original size:298 final size:298
Alignment explanation
Indices: 12281351--12282020 Score: 930
Period size: 298 Copynumber: 2.2 Consensus size: 298
12281341 GATTGTGAGT
* * *
12281351 CTTATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTACA-ATCTCCCTGGTCAGCAG
1 CTTATCTCCCTGGTCAATAGTGGAATAGGTTGAAGATTGTAAGT-CATATCTCCCTGGTCAGCAG
* * * *
12281415 TGGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGGACTTGGTTGAAGAGTGTGAATCCTATCT
65 TGGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGCAATAGGTTGAAGAGTATGAATCCTATCT
* * *
12281480 CCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATATCCTTGAGTAGTAGTGGAGTAG
130 CCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATATCCCTGAGCAGCAGTGGAGTAG
* *
12281545 GTTGAAAATTAAAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAAGGCGAATCTTAC
195 GTTGAAAATTAAAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTAC
*
12281610 CTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
260 CTTCCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGC
* * *
12281649 CTTATCTCCCTGGTCAGTAGTGCAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAATAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
* * * * * * *
12281714 GAAATAGGTGAGTCCTATCTCCCTTGTCAGTAGTGCAATAGGTTGAAGATTATGATTCCTATCTC
66 GGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGCAATAGGTTGAAGAGTATGAATCCTATCTC
* * * * * * *
12281779 CCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCGTATCTCCCTGAGCAGCAGTGGAGTATG
131 CCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATATCCCTGAGCAGCAGTGGAGTAGG
* * * * * *
12281844 TTGAAAATTACAGATCCTATTTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATC
196 TTGAAAATTAAAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACC
* * *
12281909 TTTCCAATGTAGTAGGGAAGCAGATATAAGCCACTAGC
261 TTCCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGC
* * *
12281947 CTTATCTCCCTGGT-AACTAGTGGAATAGGTTGATGATTGTAAGTCCTATCTCCCTAGTCAGCAG
1 CTTATCTCCCTGGTCAA-TAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAG
12282011 TGGAATAGGT
65 TGGAATAGGT
12282021 TGACGATTAT
Statistics
Matches: 324, Mismatches: 46, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
297 3 0.01
298 321 0.99
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (298 bp):
CTTATCTCCCTGGTCAATAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
GGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGCAATAGGTTGAAGAGTATGAATCCTATCTC
CCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATATCCCTGAGCAGCAGTGGAGTAGG
TTGAAAATTAAAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACC
TTCCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGC
Found at i:12282113 original size:298 final size:293
Alignment explanation
Indices: 12281351--12282146 Score: 741
Period size: 298 Copynumber: 2.7 Consensus size: 293
12281341 GATTGTGAGT
* * * * *
12281351 CTTATCTCTCTGGTCAAC-AGTGGAATAGTTTGAAGATTGTAAGTACA-ATCTCCCTGGTCAGCA
1 CTTATCTCCCTGGT-AACTAGTGCAATAGGTTGAAGACTGTAAGT-CATATCTCCCTAGTCAGCA
* * * * * * * * * * **
12281414 GTGGAATAGGTGAATCATATCTCCCTGGTCAGA-AGTGGACTTGGTTGAAGAGTGTGAA-TCCTA
64 GTGAAATAGATGAGTCCTATCTCCCTGGTCA-ACAGTGCAATAGATTGAAGATTAT-AAGTCAAA
* * * * * *
12281477 TCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATATCCTTGAGT-AGTAGTGGA
127 TCTCCCTGGTCAGCAGTGTAATA-G-T-AAG--TGTGAATCCTATCTCCCTG-GTCAGCAGTGGA
* *
12281541 GTAGGTTGAAAATTAAAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAAGGCGAATC
186 GTAGGTTGAAAATTAAAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATC
*
12281606 TTACCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
251 TTACCTTCCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGC
* * *
12281649 CTTATCTCCCTGGTCAGTAGTGCAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTAACTAGTGCAATAGGTTGAAGACTGTAAGTCATATCTCCCTAGTCAGCAGT
* * ** * * * **
12281714 GAAATAGGTGAGTCCTATCTCCCTTGTCAGTAGTGCAATAGGTTGAAGATTATGATTCCTATCTC
66 GAAATAGATGAGTCCTATCTCCCTGGTCAACAGTGCAATAGATTGAAGATTATAAGTCAAATCTC
* *
12281779 CCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCGTATCTCCCTGAG-CAGCAGTGGAGTAT
131 CCTGGTCAGCAGTGTAATA-G-T-AAG--TGTGAATCCTATCTCCCTG-GTCAGCAGTGGAGTAG
* * * * * *
12281843 GTTGAAAATTACAGATCCTATTTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTAT
190 GTTGAAAATTAAAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTAC
* * *
12281908 CTTTCCAATGTAGTAGGGAAGCAGATATAAGCCACTAGC
255 CTTCCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGC
* * * *
12281947 CTTATCTCCCTGGTAACTAGTGGAATAGGTTGATGATTGTAAGTCCTATCTCCCTAGTCAGCAGT
1 CTTATCTCCCTGGTAACTAGTGCAATAGGTTGAAGACTGTAAGTCATATCTCCCTAGTCAGCAGT
* * *
12282012 GGAATAGGTTGACGATTATGAGTCCTATCTCCCTGGTTAACAGTGGAATAGATTGAAGATTGTAA
66 -GAA-A---T-A-G---ATGAGTCCTATCTCCCTGGTCAACAGTGCAATAGATTGAAGATTATAA
* * *
12282077 GTCAAATCTCCTTGGTCAGCAGTG-GA-A-T-AG-GTGAATCCTATCTCCCTGGTTAGCAGTGGA
121 GTCAAATCTCCCTGGTCAGCAGTGTAATAGTAAGTGTGAATCCTATCTCCCTGGTCAGCAGTGGA
*
12282137 ATAGGTTGAA
186 GTAGGTTGAA
12282147 GATTGTGAAT
Statistics
Matches: 419, Mismatches: 63, Indels: 32
0.82 0.12 0.06
Matches are distributed among these distances:
297 5 0.01
298 343 0.82
299 3 0.01
300 1 0.00
301 2 0.00
303 2 0.00
304 1 0.00
305 1 0.00
306 1 0.00
307 1 0.00
308 59 0.14
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (293 bp):
CTTATCTCCCTGGTAACTAGTGCAATAGGTTGAAGACTGTAAGTCATATCTCCCTAGTCAGCAGT
GAAATAGATGAGTCCTATCTCCCTGGTCAACAGTGCAATAGATTGAAGATTATAAGTCAAATCTC
CCTGGTCAGCAGTGTAATAGTAAGTGTGAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAA
AATTAAAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACCTTCCC
AAGGTAGTAGGGAAGAAGATATAAGCCACTAGC
Found at i:12282164 original size:78 final size:78
Alignment explanation
Indices: 12282034--12282186 Score: 227
Period size: 78 Copynumber: 2.0 Consensus size: 78
12282024 CGATTATGAG
* *
12282034 TCCTATCTCCCTGGTTAACAGTGGAATAGATTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAG
1 TCCTATCTCCCTGGTTAACAGTGGAATAGATTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAA
*
12282099 TGGAATAGGTGAA
66 TAGAATAGGTGAA
* * * *
12282112 TCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATTC-TATCTCCCTGGTCAGCA
1 TCCTATCTCCCTGGTTAACAGTGGAATAGATTGAAGATTGT-AAGTCAAATCTCCCTGGTCAGCA
12282176 ATAGAATAGGT
65 ATAGAATAGGT
12282187 TGAAGATTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 63 0.94
79 4 0.06
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (78 bp):
TCCTATCTCCCTGGTTAACAGTGGAATAGATTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAA
TAGAATAGGTGAA
Found at i:12282400 original size:34 final size:35
Alignment explanation
Indices: 12282352--12282418 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
12282342 TTGTAAGTCA
12282352 TATCTCCCTGGTCAGCAGTGAAATAGG-TGAATCC
1 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAATCC
* * *
12282386 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAT
1 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAAT
12282419 ATTGTGAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 24 0.83
35 5 0.17
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (35 bp):
TATCTCCCTGGTCAGCAGTGAAATAGGTTGAATCC
Found at i:12282441 original size:78 final size:78
Alignment explanation
Indices: 12282308--12282457 Score: 221
Period size: 78 Copynumber: 1.9 Consensus size: 78
12282298 CCACTCGCCT
12282308 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
12282373 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * * *
12282386 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAA-TCCTATCTCTCTGGTCAGTAGTG
1 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGT-AAGTCATATCTCCCTGGTCAGCAGTG
*
12282450 TAATAGGT
65 AAATAGGT
12282458 TGTTGATTGT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
78 62 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (78 bp):
TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
AATAGGTGAATCC
Found at i:12282788 original size:298 final size:299
Alignment explanation
Indices: 12282215--12283079 Score: 1046
Period size: 298 Copynumber: 2.9 Consensus size: 299
12282205 TCTCCCTTAG
12282215 AGATCTTATCTCCCAAAGCAGTAGTGGAACAGAT-GAAGACGGCGAATCTTATCTTCCCAAGGTA
1 AGATCTTATCTCCCAAAGCAGTAGTGGAACAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTA
* * *
12282279 GTAGGGAAGAATATTTAAGCCACTCGCCTTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATT
66 GTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT
* * *
12282344 GTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGG-TGAATCCTATCTCCCTTGTCAGTAGTGGA
131 GTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTTGAATCCTATCTCCCTTCTCACTAGTGCA
* * * * * * * **
12282408 ATAGGTTGAATATTGTGAATCCTATCTCTCTGGTCAGTAGTGTAATAGGTTGTTGATTGTAAATC
196 ACAGGTGGAATATGGTGAATACTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATC
* *
12282473 CTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAC
261 CTATCTCCCTAAGCAGCAGTCGAGTAGGTTGAAAATTAC
* * * * * * * * * * *
12282512 AGATCTTATCTCTCTAAGTAGTTGTAGAGCAGATCGAAGACGGCGATTCTTATATTCCTAAGCTG
1 AGATCTTATCTCCCAAAGCAGTAGTGGAACAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTA
* * * *
12282577 GTAGGGAAGCAA-ATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGT
66 GTAGGGAAG-AAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGAT
* * * ** * *
12282641 TATAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA-GT-CCTATCTCCCTA
130 TGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTTG-A-ATCCT-ATCTCCCT-TCTCACTA
*
12282704 GT-CAACA-GTGGAATA-GGTGAATACTCTCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT
191 GTGCAACAGGTGGAATATGGTGAATACTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT
* * *
12282766 GAATCCTATCTCCCTAAGCAGCAGTCGAGTAGGTTGAGAATTAT
256 AAATCCTATCTCCCTAAGCAGCAGTCGAGTAGGTTGAAAATTAC
*
12282810 AGATCTTATCTCCCAAAGCAGTAGTGGACCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTA
1 AGATCTTATCTCCCAAAGCAGTAGTGGAACAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTA
12282875 GTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGAT
66 GTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGAT
* * * * * *
12282940 TGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGG-TGAATCCTTTGTCCCTTGTTAGTAGTGG
130 TGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTTGAATCCTATCTCCCTTCTCACTAGTGC
* * * ** * * * * * * * *
12283004 AATAGGTTGAAGATTATGAGTCCTTTCTCTCTAGTCAACAGTGTAATAGGTTGAAGATTGTGAAT
195 AACAGGTGGAATATGGTGAATACTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAAT
12283069 CCTATCTCCCT
260 CCTATCTCCCT
12283080 CGTCAATAGT
Statistics
Matches: 474, Mismatches: 80, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
296 11 0.02
297 37 0.08
298 287 0.61
299 120 0.25
300 7 0.01
301 11 0.02
302 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (299 bp):
AGATCTTATCTCCCAAAGCAGTAGTGGAACAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTA
GTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT
GTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTTGAATCCTATCTCCCTTCTCACTAGTGCA
ACAGGTGGAATATGGTGAATACTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATC
CTATCTCCCTAAGCAGCAGTCGAGTAGGTTGAAAATTAC
Found at i:12282799 original size:78 final size:78
Alignment explanation
Indices: 12282652--12282799 Score: 244
Period size: 78 Copynumber: 1.9 Consensus size: 78
12282642 ATAAGTCCTA
* *
12282652 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAACAGTGGAA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAACAGTCGAA
12282717 TAGGTGAATACTC
66 TAGGTGAATACTC
*
12282730 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAG-CAGCAGTCGA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCT-AGTCAACAGTCGA
*
12282794 GTAGGT
65 ATAGGT
12282800 TGAGAATTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
78 63 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (78 bp):
TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAACAGTCGAA
TAGGTGAATACTC
Found at i:12283925 original size:298 final size:297
Alignment explanation
Indices: 12283552--12284519 Score: 1142
Period size: 298 Copynumber: 3.2 Consensus size: 297
12283542 GATTGTGAGT
* ** * *
12283552 CTTATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTACA-ATCTCCCTGGTCAGCAG
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGT-CATATCTCCCTGGTCAGCAG
*
12283616 TGGAATAGGTGAATCATATCTTCCTGGTCAGAGGTGGACTTGGTTGAAGAGTGTGAATCCTATCT
65 TGGAATAGGTGAATCATATCTTCCT-GTCAGAGGTGGACTTGGTTGAAGAGTATGAATCCTATCT
* * * * * *
12283681 CCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATGTCCTTGAGTAGCAGTGGAGTAG
129 CCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAG
* * * * * *
12283746 GTTGAAAATTAGAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAAGGCGAATCTTAC
194 GTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTAT
12283811 CTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
259 CTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
*
12283850 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGT
* * * * * *
12283915 -GAATTAGGTGAATCCTATCTCCCTTGTCAGTA-CTGGAATAGGTTGAAGATTATGAATCCTATC
66 GGAA-TAGGTGAATCATATCTTCC-TGTCAG-AGGTGGACTTGGTTGAAGAGTATGAATCCTATC
* * * * *
12283978 TCCCTGGTCAGCGGTGTAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGTAGTGGAGTA
128 TCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTA
* * * *
12284043 GGTTGAAAATTACAGATCTTAACTCTCTAAGTAGTAGTAGAGCAGATCGAAGACGGAGATTCTTA
193 GGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTA
* * * * *
12284108 TATTCCCAAGCTGGTAGGGAAGCAGATTTGAGCCACTAGC
258 TCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * * * *
12284148 CTTATCTCCCTGGTCAGTAATGGAACAGGTTAAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGT
** * * *** ** * * * *
12284213 GGAATAGGTTGAAGATTGTGAGTCTT-ATCTCCCTGGTCAACAAT-G--GAATAG-CTGAATCTT
66 GGAATAGG-TG-A-ATCAT-A-TCTTCCTGTCAGAGGTGGAC-TTGGTTGAAGAGTATGAATCCT
* *
12284273 ATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGA
125 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGA
* * * *
12284338 GAAGGTTAAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAATACGGCGATTC
190 GTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTC
* *
12284403 TTATCTTCTCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGC
255 TTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * * * *
12284446 CTTATCTCCCCGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTGTCTCCCTAGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGT
*
12284511 GGTATAGGT
66 GGAATAGGT
12284520 TGAAGATTCT
Statistics
Matches: 564, Mismatches: 94, Indels: 25
0.83 0.14 0.04
Matches are distributed among these distances:
297 6 0.01
298 533 0.95
299 11 0.02
300 1 0.00
301 9 0.02
302 1 0.00
303 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (297 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGT
GGAATAGGTGAATCATATCTTCCTGTCAGAGGTGGACTTGGTTGAAGAGTATGAATCCTATCTCC
CTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCT
TCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
Found at i:12284049 original size:386 final size:381
Alignment explanation
Indices: 12283256--12284001 Score: 916
Period size: 386 Copynumber: 2.0 Consensus size: 381
12283246 TATCTTCATT
* * * * * *
12283256 GTCAGTAGCGGAATAGGTTGACGATTGTAAGTCCTATCTCTCTAGTCAGTAGTAGAATAGGCTGA
1 GTCAGTAGTGGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTAGTCAGCAATAGAATAGGCTGA
* * * * *
12283321 AAATTGTGAATCCTATATCCCTGAGCAGCAATGGAGTAGGTTGCAAATTATAAATCTTATCTCCT
66 AAACTGCGAATCCTATATCCCTGAGCAGCAATGGAGTAGGTTGAAAATTAGAAATCTTATCTCCC
* * * * *
12283386 TAAGCAGTAGTAGAGCAGATCGAAGATGGCGATTCTTATCTTCCCAGGGTAGTAGGGAAATAGAT
131 AAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAATAGAT
* * *
12283451 TTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTAGAATAGGTGGAAGATTGTAAGTCCTATCCC
196 TTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTAGAATAGGTGGAAGACTATAAGTCATATCCC
* * * * *
12283516 CCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCTTATCTCTCTGGTCAACAGTGGAATAGT
261 CCTGGTCAGCAGT-GGATA-GTT-AAG--TGTGAATCCTATCTCCCTGGTCAACACTGGAATAGG
* *
12283581 TTGAAGATTGTAAGTACAATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTTCCTG
321 TTGAAGATTATAAGTACAATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCCCTG
* * * * *
12283642 GTCAG-AGGTGGACTTGGTTGAAGAGTGTGAA-TCCTATCTCCCTGGTCAGCAATGGAATAGGTT
1 GTCAGTA-GTGGAATAGGTTGAAGAGTGT-AAGTCCTATCTCCCTAGTCAGCAATAGAATAGGCT
* * * * * *
12283705 GAAGACTGCGAATCCTATGTCCTTGAGTAGCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCTC
64 GAAAACTGCGAATCCTATATCCCTGAGCAGCAATGGAGTAGGTTGAAAATTAGAAATCTTATCTC
*
12283770 CCAAAGCAGTAGTGGAGCAGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGA-A
129 CCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGTAGGGAA-ATA
* *
12283834 GATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATAAGTCATAT
193 GATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTAGAATAGGTGGAAGACTATAAGTCATAT
* * **
12283899 CTCCCTGGTCAGCAGT-GA-A-TT-AG-GTGAATCCTATCTCCCTTGTCAGTACTGGAATAGGTT
258 CCCCCTGGTCAGCAGTGGATAGTTAAGTGTGAATCCTATCTCCCTGGTCAACACTGGAATAGGTT
* * * *
12283959 GAAGATTATGAA-TCCTATCTCCCTGGTCAGCGGTGTAATAGGT
323 GAAGATTAT-AAGTACAATCTCCCTGGTCAGCAGTGGAATAGGT
12284002 TGTAGATTGT
Statistics
Matches: 309, Mismatches: 47, Indels: 18
0.83 0.13 0.05
Matches are distributed among these distances:
376 64 0.21
377 2 0.01
379 2 0.01
381 2 0.01
383 1 0.00
384 2 0.01
385 1 0.00
386 232 0.75
387 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (381 bp):
GTCAGTAGTGGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTAGTCAGCAATAGAATAGGCTGA
AAACTGCGAATCCTATATCCCTGAGCAGCAATGGAGTAGGTTGAAAATTAGAAATCTTATCTCCC
AAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAATAGAT
TTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTAGAATAGGTGGAAGACTATAAGTCATATCCC
CCTGGTCAGCAGTGGATAGTTAAGTGTGAATCCTATCTCCCTGGTCAACACTGGAATAGGTTGAA
GATTATAAGTACAATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCCCTG
Found at i:12284288 original size:342 final size:335
Alignment explanation
Indices: 12283256--12285026 Score: 1155
Period size: 342 Copynumber: 5.2 Consensus size: 335
12283246 TATCTTCATT
* * * * * * * * *
12283256 GTCAGTAGCGGAATAGGTTGACGATTGT-AAGTCCTATCTCTCTAGTCAGTAGTAGAATAGGCTG
1 GTCAGCAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTG
* * * * * * * *
12283320 AAAATTGTGAATCCTATATCCCTGAGCAGCAATGGAGTAGGTTGCAAATTATAAATCTTATCTC-
65 AAGATTGTAAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCT
* * * * *
12283384 CTTAAGCAGTAGTAGAGCAGATCGAAGATGGCGATTCTTATCTTCCCAGGGTAGTAGGGAA-ATA
130 C-TAAGTAGTAGTGGAGCAGAT-GAAGACGGAGA-TCTTAT-TTCCCAAGGTAGTAGGGAAGA-A
* * * *
12283448 GATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTAGAATAGGTGGAAGATTGTAAGTCCTAT
190 GATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAGT-GGA-AGGT-TAAGGTT-TAAGTCCTAT
* * * * * *
12283513 CCCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCTTATCTCTCTGGTCAACAGTGGAAT
251 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAAT
* *
12283578 AGTTTGAAGATTGTAAGTACAATCTCCCTG
316 A----G--G--TG-AA-TCCTATCTCCCTG
* * *
12283608 GTCAGCAGTGGAATAGG-TG-A-ATCAT--AT-C--T-T-CCTGGTCAG-AGGTGGACTTGGTTG
1 GTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCA-GTGGAATAGGTTG
* * * * * * * * * *
12283662 AAGAGTGTGAATCCTATCTCCCTG-GTCAGCAATGGAATAGGTTGAAGACTGC-GAATCCTATGT
65 AAGATTGTAAATCCTATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAAAATTACAG-ATCTTATCT
* * * * * ** * * * *
12283725 C-CTTGAGTAGCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCTCCCAAAGCAGTAGTGG-AGC
128 CTC-TAAGTAGTAGTGGAGCA-GATGAAGA-CGGAGATCTTATTTCCCAAGGTAGTAG-GGAAGA
* * * ** * * *
12283788 AGA-TCGAAG-AAGGCGAATCTTACCTTCCCAAGGT-AGTAG-GGAA-G--AAGATTTAAGCCAC
189 AGATTTG-AGCCA--CTAGCCTTATC-TCCC-TGGTCAGTAGTGGAAGGTTAAGGTTTAAG----
* * * *
12283846 TAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAG
245 T--CC-TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
*
12283911 CAGT-GAATTAGGTGAATCCTATCTCCCTT
307 CAGTGGAA-TAGGTGAATCCTATCTCCCTG
* * * * *
12283940 GTCAGTACTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCGGTGTAATAGGTTGT
1 GTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGA
*
12284005 AGATTGTAAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTAACTCTC
66 AGATTGTAAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCTC
* * * *
12284070 TAAGTAGTAGTAGAGCAGATCGAAGACGGAGATTCTTATATTCCCAAGCTGGTAGGGAAGCAGAT
131 TAAGTAGTAGTGGAGCAGAT-GAAGACGGAGA-TCTTAT-TTCCCAAGGTAGTAGGGAAGAAGAT
*
12284135 TTGAGCCACTAGCCTTATCTCCCTGGTCAGTAATGGAACAGGTTAAAGGTTATAAGTCCTATCTC
193 TTGAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGG-A-AGGTT-AAGGTT-TAAGTCCTATCTC
* * * * *
12284200 CCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCTTATCTCCCTGGTCAACAATGGAATAGC
254 CCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGG
*
12284265 TGAATCTTATCTCCCTG
319 TGAATCCTATCTCCCTG
* * *
12284282 GTCAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAGA-AGGTT
1 GTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTG-GTCAGCAGTGGA-ATAGGTT
* * ** * * * * * * * * * ***
12284345 AAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAATACGGC-GATTCTTATCT
64 GAAGATTGTAAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGA-TCTTATCT
* * * * * * *
12284409 -TCTCAAGGTAGCAG-GGAAGAAGATTTAAGCCAC-TAG-CCTTATCTCCC-CGGTCAGTAGTGG
128 CTCT-AA-GTAGTAGTGG-AGCAGA-TGAAG--ACGGAGATCTTATTTCCCAAGGT-AGTAG-GG
* * **** * * * * *
12284469 AA-TAG-GTTGAAGATTGTAAGTCC-TGTCTCCCTAGTCAGCAGTGGTATAGGTTGAAGATTCTG
185 AAGAAGATTTG-AGCCACT-AG-CCTTATCTCCCTGGTCAGTAGTGG-A-AGGTT-AAGGTT-TA
* * * *
12284531 AGTCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATTGTAAGTCCTATCTCCCTGGTCAGC
243 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGC
*
12284596 AGTGGAATAGGTGAATCCGATCTCCCTG
308 AGTGGAATAGGTGAATCCTATCTCCCTG
* * * *
12284624 GTGAGCAGTAGAATAGGTTGAAGATTATGAATCCTATCTCCATGGTCAGCAATGGAATAGGTTGA
1 GTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGA
* * ** *
12284689 AGATTGTGAATCCTATGTCCCTGAGCACCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCC
66 AGATTGTAAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCTC
* * * * *
12284754 AAAGCAGTAGTGGAACAGATGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAAATT
131 TAAGTAGTAGTGGAGCAGATGAAGACGGAG-ATCTTAT-TTCCCAAGGTAGTAGGGAAGAAGATT
* * * *
12284819 TCAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAA---T-AGG-TGAA-TCCGATCTCCCTAG
194 TGAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAAGGTTAAGGTTTAAGTCCTATCTCCCTGG
* *
12284878 TCAGCAGTGGAATAGGTTGAAGATTGCAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAA
259 TCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGG-T---
12284943 GATTCTGAGTCCTATCTCCCTG
320 GA-----A-TCCTATCTCCCTG
* * *
12284965 GTCAACAGTGGAATAGGTTGAAGATTGT-AACTCATATCTCCCTGGTCAGCAGTGGAATAGGT
1 GTCAGCAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
12285027 GAATCCCATC
Statistics
Matches: 1093, Mismatches: 238, Indels: 187
0.72 0.16 0.12
Matches are distributed among these distances:
331 66 0.06
332 27 0.02
333 5 0.00
334 5 0.00
335 10 0.01
336 8 0.01
337 2 0.00
338 4 0.00
339 4 0.00
340 22 0.02
341 163 0.15
342 661 0.60
343 69 0.06
344 11 0.01
345 4 0.00
346 1 0.00
347 1 0.00
348 6 0.01
349 7 0.01
351 2 0.00
352 15 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (335 bp):
GTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGA
AGATTGTAAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCTC
TAAGTAGTAGTGGAGCAGATGAAGACGGAGATCTTATTTCCCAAGGTAGTAGGGAAGAAGATTTG
AGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAAGGTTAAGGTTTAAGTCCTATCTCCCTGGTC
AGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCC
TATCTCCCTG
Found at i:12284520 original size:298 final size:297
Alignment explanation
Indices: 12283669--12285483 Score: 1126
Period size: 298 Copynumber: 6.1 Consensus size: 297
12283659 TTGAAGAGTG
* * * * * *
12283669 TGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATGTCCTTGAGTA
1 TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCA
* ** * *
12283734 GCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAA
66 GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAAGAC
* *
12283799 GGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGT
131 GGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGT
* *
12283864 CAGTAGTGGAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGT-GA-A--TT--AG-
196 CAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGGATAGGTTGAAGA
* * * *
12283922 --GTGAATCCTATCTCCCTTGTCAGTACTGGAATAGGTTGAAGATTA
261 TTGTGAGTCCTATCTCCCTGGTCA--AC---AAT--G--GAATA-GA
* * * *
12283967 TGAATCCTATCTCCCTGGTCAGCGGTGTAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCA
1 TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCA
* * *
12284032 GTAGTGGAGTAGGTTGAAAATTACAGATCTTAACT-CTCTAAGTAGTAGTAGAGCAGATCGAAGA
66 GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCT-TAAGCAGTAGTAGAGCAGATCGAAGA
* * * * * *
12284096 CGGAGATTCTTATATTCCCAAGCTGGTAGGGAAGCAGATTTGAGCCACTAGCCTTATCTCCCTGG
130 CGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
* * * *
12284161 TCAGTAATGGAACAGGTTAAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAA
195 TCAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGG-ATAGGTTGAA
* *
12284226 GATTGTGAGTCTTATCTCCCTGGTCAACAATGGAATAGC
259 GATTGTGAGTCCTATCTCCCTGGTCAACAATGGAATAGA
* * *
12284265 TGAATCTTATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGCA
1 TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCA
* * *
12284330 GCAGTGGAGAAGGTTAAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAATAC
66 GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAAGAC
* * *
12284395 GGCGATTCTTATCTTCTCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCCGGT
131 GGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGT
* * *
12284460 CAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTGTCTCCCTAGTCAGCAGTGGTATAGGTTGAAG
196 CAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGG-ATAGGTTGAAG
* * * *
12284525 ATTCTGAGTCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGA
260 ATTGTGAGTCCTATCTCCCTGGTCAACAATGG-A-A--T---AGA
*
12284570 TTGTAAGTCCTATCTCCCTGGTCAGCAGTGG-A-A---T--AG---GTGAATCCGATCTCCCTG-
1 -TG-AA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGA
* * * * * * * * * * * ** * *
12284624 GTGAGCAGTAGAATAGGTTGAAGATTA-TGAATCCTATCTCCAT-GGTCAGCAATGGAATAGGTT
63 G-CAGCAGTGGAGTAGGTTGAAAATTACAG-ATCTTATCTCCTTAAG-CAGTAGTAGAGCAGATC
** * * * * * * ** * * * *** *
12284687 GAAGATTGTGAATCCTAT-GTCCC-TGAGCACCAGTGG-AGTAGGTTGAAAATTAC-AGATCTTA
125 GAAGACGGCGATTCTTATCTTCCCAAG-GTAGTAG-GGAAGAAGATT-TAAGCCACTAG-CCTTA
** * * **** * * *
12284748 TCTCCCAAAG-CAGTAGTGGAACA-GATGAAGACGGCGAA-TCTTATCTTCCCAAGGT-AGTAG-
186 TCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGA-TTATAAGTCCTATC-TCCC-TGGTCAGCAGT
* ** **** ** * *
12284808 GGA-AGAAAATTTCAGCCACT-AG-CCTTATCTCCCTGGTCAGTAGTGGAATAGG
247 GGATAG---GTTGAAGATTGTGAGTCC-TATCTCCCTGGTCAACAATGGAATAGA
* * *
12284860 TGAATCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTG-CAAGTCCTATCTCCCT-AGT
1 TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAG-
* * * * * * ** * ** * *
12284923 CAGCAGTGGAATAGGTTGAAGATT-CTGAGTCCTATCTCCCT-GGTCAACAGTGGAATAGGTTGA
64 CAGCAGTGGAGTAGGTTGAAAATTACAGA-TCTTATCTCCTTAAG-CAGTAGTAGAGCAGATCGA
** ** * * * * * * * *
12284986 AGATTGTAACTCATATC-TCCC-TGGTCAGCAGTGGAA-TAG--GT--G--A--ATCC-CATCTC
127 AGACGGCGATTCTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACTAGCCTTATCTC
* * *
12285039 CCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTGGA-A---
190 CCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGGATAGGT
* * * * *
12285100 T--AG---GTGAATCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGA
255 TGAAGATTGTGAGTCCTATCTCCCTGGTCAACAATGG-A-A---T--AGA
* * * *
12285145 TTTTGAGTCCTATCTCCCTGGTCAGTAATGGAATAGGTTGAAGATTGTGAATCCTATCTGCCTGA
1 ---TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGA
* ** * *
12285210 GCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCGCCCAAAGCAGTAGTGGAACAGAT-GAA
63 GCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAA
* * * * *
12285274 GATGGCGAATCTTATCTTCCCATGGTAGTAGGGAAGAAGATTTCAGCCACTAGTCTTATCTCCCT
128 GACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCT
* * *
12285339 GGTCAGTAGTGGAATAGGTTGGAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTG
193 GGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGG-ATAGGTTG
* * * * * * *
12285404 AAAATTGTGAATCCTATATCCCTGAG-CAGCAGTGGAGTAGGTT
257 AAGATTGTGAGTCCTATCTCCCTG-GTCAACAATGGAATA-G-A
*
12285447 TGTAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGT
1 TG-AA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
12285484 GAATCCTATC
Statistics
Matches: 1201, Mismatches: 214, Indels: 201
0.74 0.13 0.12
Matches are distributed among these distances:
277 1 0.00
278 19 0.02
279 3 0.00
280 3 0.00
282 1 0.00
283 1 0.00
285 2 0.00
286 4 0.00
287 69 0.06
288 124 0.10
289 16 0.01
290 4 0.00
292 2 0.00
293 1 0.00
294 3 0.00
295 3 0.00
296 11 0.01
297 211 0.18
298 581 0.48
299 14 0.01
300 4 0.00
301 35 0.03
302 3 0.00
303 6 0.00
304 1 0.00
305 4 0.00
306 6 0.00
307 27 0.02
308 42 0.03
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (297 bp):
TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCA
GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAAGAC
GGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGT
CAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGGATAGGTTGAAGA
TTGTGAGTCCTATCTCCCTGGTCAACAATGGAATAGA
Found at i:12284711 original size:122 final size:120
Alignment explanation
Indices: 12284494--12285576 Score: 577
Period size: 122 Copynumber: 8.7 Consensus size: 120
12284484 GTAAGTCCTG
* * * * *
12284494 TCTCCCTAGTCAGCAGTGGTATAGGTTGAAGATTCTGAGTCCTATCACCCA-GGTCAACAGTGGA
1 TCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT-TGAATCCTATC-TCCATGGTCAGCAATGGA
*
12284558 ATAGGTCGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGA
64 ATAGGTTGAAGATTGTAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGA
* * *
12284616 TCTCCCTGGTGAGCAGTAGAATAGGTTGAAGATTATGAATCCTATCTCCATGGTCAGCAATGGAA
1 TCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT-TGAATCCTATCTCCATGGTCAGCAATGGAA
* * *
12284681 TAGGTTGAAGATTGTGAATCCTATGTCCCTGAG-CACCAGTGGAGTAGGTTGAAAATTACAGATC
65 TAGGTTGAAGATTGT-AATCCTATCTCCCTG-GTCAGCAGTGGAATAGG-TG--AA-T-C----C
*
12284745 TTA
119 -GA
* * * * *** * * * *
12284748 TCTCCCAAAG-CAGTAGTGGAACA-GATGAAGACGGCGAATCTTATCTTCCCAAGGT-AG-TAGG
1 TCTCCC-TAGTCAGCAGTGGAATAGGTTGAAGA-TTTGAATCCTATC-T-CCATGGTCAGCAATG
* ** ** **** * *
12284809 GAAGAAAATTTCAGCCACT-AGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTGAATCCGA
62 GAA-TAGGTTGAAGATTGTAATCC-TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGA
* * *
12284869 TCTCCCTAGTCAGCAGTGGAATAGGTTGAAGA-TTGCAAGTCCTATCTCCCTAGTCAGCAGTGGA
1 TCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTTG-AA-TCCTATCTCCATGGTCAGCAATGGA
* * *
12284933 ATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAACTC
64 ATAGGTTGAAGATTGT-AATCCTATCTCCCTGGTCAGCAGTGGAATAGG-TG-A-A---T--C-C
*
12284998 ATA
119 -GA
* * * *
12285001 TCTCCCTGGTCAGCAGTGGAATA----G--G---TGAATCCCATCTCCCTGGTCAGCAGTGGAAT
1 TCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTTGAATCCTATCTCCATGGTCAGCAATGGAAT
*
12285057 AGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTGGAATAGGTGAATCCGA
66 AGGTTGAAGATTGTAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGA
* * *
12285113 TCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTTTGAGTCCTATCTCCCTGGTCAGTAATGGAA
1 TCTCCCTAGTCAGCAGTGGAATAGGTTGAAGA-TTTGAATCCTATCTCCATGGTCAGCAATGGAA
* * *
12285178 TAGGTTGAAGATTGTGAATCCTATCTGCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTACAGA
65 TAGGTTGAAGATTGT-AATCCTATCTCCCTG-GTCAGCAGTGGAATAGG-TG--AA-T-CCGA
* * * * ** *
12285240 TCTTATCGCCCAAAG-CAGTAGTGGAACA-GATGAAGATGGCGAATCTTATCTTCCCATGGT-AG
1 TC---T--CCC-TAGTCAGCAGTGGAATAGGTTGAAGAT-TTGAATCCTATC-T-CCATGGTCAG
* * * * ** **** * * *
12285302 -TAGGGAAGAAGATTTCAGCCACTAGTCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGGAGATT
57 CAATGGAA-TAGGTTGAAGATTGTAATCCTATCTCCCTGGTCAGCAGTGGAATA-----G-G--T
*
12285366 GTAAGTCCTA
113 G-AA-TCCGA
* * * *
12285376 TCTCCCTAGTCAGCAGTGGAATAGGTTGAAAATTGTGAATCCTATATCCCTGAG-CAGCAGTGGA
1 TCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT-TGAATCCTATCTCCATG-GTCAGCAATGGA
* * *
12285440 GTAGG-T-----TTGTAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGTGAATCCTA
64 ATAGGTTGAAGATTGTAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGA
* * * *
12285492 TCTCCCTGGTCACCAGTGGAATAGGTTCAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAA
1 TCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT-TGAATCCTATCTCCATGGTCAGCAATGGAA
12285557 TAGGTTGAAGATTGTGAATC
65 TAGGTTGAAGATTGT-AATC
12285577 TTATGTTTCT
Statistics
Matches: 728, Mismatches: 144, Indels: 178
0.69 0.14 0.17
Matches are distributed among these distances:
112 23 0.03
113 1 0.00
114 1 0.00
115 1 0.00
116 67 0.09
117 3 0.00
118 3 0.00
119 1 0.00
120 9 0.01
121 37 0.05
122 272 0.37
123 18 0.02
124 3 0.00
125 7 0.01
126 29 0.04
127 7 0.01
128 4 0.01
130 17 0.02
131 107 0.15
132 90 0.12
133 16 0.02
136 5 0.01
137 4 0.01
138 3 0.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (120 bp):
TCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTTGAATCCTATCTCCATGGTCAGCAATGGAAT
AGGTTGAAGATTGTAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGA
Found at i:12284723 original size:166 final size:167
Alignment explanation
Indices: 12283852--12286668 Score: 875
Period size: 166 Copynumber: 16.7 Consensus size: 167
12283842 CCACTAGCCT
* * * * *
12283852 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGT-
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTG
* * * * *
12283915 GAATTAGGTGAA-TCCTATCTCCCTTGTCAGTACTGGAATAGGTTGAAGATTATGAATCCTATCT
66 GAA-TAGGTGAAGTCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCT
* * * *
12283979 CCCTGGTCAGCGGTGTAATAGGTTGTAGATTGTAAATCC
130 CCCTGGTCAGCAGTG-GATAGGTTGAAGATTGTGAATCC
* * * * * * *
12284018 TATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCTTAACTCTCTAAGT-AGTA
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCCTATCTCCCT-AGTCAGCA
* ** * * * ** ** * ** *
12284079 GTAGAGCAGATCGAAGACGGAGAT-TCTTATATTC-CCAAGCTGG--TAGGGAAGCAGATT-TGA
63 GTGGAATAGGT-GAAGTC--CGATCTC-CCTGGTCAGC-AG-TGGAATA-GGTTGAAGATTGTGA
* * * * * *
12284139 GCCACTAGCCTTATCTCCCTGGTCAGTAATGGAACAGGTTAAAGGTTAT-AAGTCC
121 ---A-T--CC-TATCTCCCTGGTCAGCAGTGG-ATAGGTTGAAGATTGTGAA-TCC
* * * * *
12284194 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCTTATCTCCCTGGTCAACAATG
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTG
* ** * *
12284258 GAATAGCTGAA-TCTTATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTC
66 GAATAGGTGAAGTCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
* * * ** *
12284322 CCTGAG-CAGCAGTGGAGAAGGTTAAAAATT-ACAGATCT
131 CCTG-GTCAGCAGTGGA-TAGGTTGAAGATTGTGA-ATCC
* * * * ** * * * ** ** * * * *
12284360 TATCTCCTTAAG-CAGTAGTAGAGCAGATCGAATACGGCGATTCTTATCTTCTCAAGGT-AGCAG
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATC-TCCCTA-GTCAGCAG
* * * * * *
12284423 -GGAAGAAGATTTAAGCCACTAGCCTTATCTCCCCGGTCAGTAGTGGAATAGGTTGAAGATTGT-
64 TGGAA-TAG-GTGAAG----T--CC-GATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
* * * *
12284486 AAGTCCTGTCTCCCTAGTCAGCAGTGGTATAGGTTGAAGATTCTGAGTCC
120 AA-TCCTATCTCCCTGGTCAGCAGTGG-ATAGGTTGAAGATTGTGAATCC
* * * * *
12284536 TATCACCCAG-GTCAACAGTGGAATAGGTCGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTG
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTG
* * *
12284600 GAATAGGTGAA-TCCGATCTCCCTGGTGAGCAGTAGAATAGGTTGAAGATTATGAATCCTATCTC
66 GAATAGGTGAAGTCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
* *
12284664 CATGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCC
131 CCTGGTCAGCAGTGG-ATAGGTTGAAGATTGTGAATCC
* * * * * * *
12284702 TATGTCCCTGAG-CACCAGTGGAGTAGGTTGAA-AAT-TACAGATCTTATCTCCCAAAG-CAGTA
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCCTATCTCCC-TAGTCAGCA
* * * ** * * * ** *
12284763 GTGGAACAGATGAAGACGGCGAATCTTATCT--TC-CCAAG-GTAGTAGGGAAGAAAATT-TCAG
63 GTGGAATAGGTGAAGTC--CG-ATC-TCCCTGGTCAGC-AGTGGAATA-GGTTGAAGATTGT--G
* *
12284823 CCACTAGCCTTATCTCCCTGGTCAGTAGTGGA-A---T--AG---GTGAATCC
120 --A--ATCC-TATCTCCCTGGTCAGCAGTGGATAGGTTGAAGATTGTGAATCC
* *
12284867 GATCTCCCT-AGTCAGCAGTGGAATAGGTTGAAGATTGCAAGTCCTATCTCCCTAGTCAGCAGTG
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTG
* *
12284931 GAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AA
66 GAATAGG-T---GA-----AGTCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA
*
12284995 CTCATATCTCCCTGGTCAGCAGTGGA-A---T--AG---GTGAATCC
122 -TCCTATCTCCCTGGTCAGCAGTGGATAGGTTGAAGATTGTGAATCC
* * *
12285033 CATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTG
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTG
* * *
12285097 GAATAGGTGAA-TCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTTTGAGTCCTATCTC
66 GAATAGGTGAAGTCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
* *
12285161 CCTGGTCAGTAATGGAATAGGTTGAAGATTGTGAATCC
131 CCTGGTCAGCAGTGG-ATAGGTTGAAGATTGTGAATCC
* * * * * * *
12285199 TATCTGCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCTTATCGCCCAAAG-CAGTA
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCCTATCTCCC-TAGTCAGCA
* * * ** * * **
12285260 GTGGAACAGATGAAGATGGCGAATCTTATCT--TC-CCA-TGGTAGTAGGGAAGAAGATT-TCAG
63 GTGGAATAGGTGAAG-T-CCG-ATC-TCCCTGGTCAGCAGTGG-AATA-GGTTGAAGATTGT--G
* * *
12285320 CCACTAGTCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGGAGATTGT-AAGTCC
120 --A--A-TCCTATCTCCCTGGTCAGCAGTGG-ATAGGTTGAAGATTGTGAA-TCC
* *
12285374 TATCTCCCT-AGTCAGCAGTGGAATAGGTTGAAAATTGTGAA-TCCTATATCCCTGAG-CAGCAG
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCT-AGTCAGCAG
* * *
12285436 TGGAGTAGGTTTGTAAGTCCTATCTCCCTGGTCAGCAATGG-A-A---T--AG---GTGAATCCT
64 TGGAATAGG--TG-AAGTCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCT
* *
12285491 ATCTCCCTGGTCACCAGTGGAATAGGTTCAAGATTGTGAATCC
126 ATCTCCCTGGTCAGCAGTGG-ATAGGTTGAAGATTGTGAATCC
* * * **
12285534 TATCTCCCTG-GTCAGCAATGGAATAGGTTGAAGATTGTGAA-TCTTATGTTTCTCAG-CAGCAG
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCT-AGTCAGCAG
* ** ** * ** * * **
12285596 TGGAGTAGGTTGAAAATTAGAGATCTTATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGACGGT
64 TGGAATAGG-TG------A-AG-TCCGATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTGT
* * * * * **** *
12285660 GAATCTTACCTTCCCAAGGT-AGTAG-GGA-AGAAGATTTAAG--CCACAAGCC
119 GAATCCTATC-TCCC-TGGTCAGCAGTGGATAG--G-TTGAAGATTGTGAATCC
* * * **
12285709 TTATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGCAGT
1 -TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGT
** * * *
12285773 CAAATTA-GTGAA-TCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATC
65 GGAA-TAGGTGAAGTCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATC
* * *
12285836 TCCCTGGTCAGCTGT-G-TA--AT-AAGATTGTGAATCT
129 TCCCTGGTCAGCAGTGGATAGGTTGAAGATTGTGAATCC
* * * * * * * **** * * * * *
12285870 TATATTCC-GAAGGT-AGTAG-AGAAGCAGATTTAAGCCACT-AGTCTTATCTTCATTGTCAGTA
1 TATCTCCCTG-A-GTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCA
* * * * *
12285931 GTGCAATAGGTTGACGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGCTGAAAATTGT
63 GTGGAATA----G--G--TG-AAGTCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT
* * *
12285996 GAATCCTATATCCCTGAG-CAGCAGTGGAGTAGGTTGCAA-ATTAT-AGATCA
119 GAATCCTATCTCCCTG-GTCAGCAGTGGA-TAGGTTG-AAGATTGTGA-ATCC
* * ** * * * ** *
12286046 TATCTCCCT-A-TGCAGTAGTAGAGCAGATCT-AAGA-CG-ACGGTTGTTATCTTCCCAAGGT-A
1 TATCTCCCTGAGT-CAGCAGTGGAATAGGT-TGAAGATTGTA-AG-TCCTATC-TCCCTA-GTCA
* * * * * *
12286105 GTAG-GGAAGTAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGAA
60 GCAGTGGAA-TAG-GTGAAG----T--CC-GATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGAT
* * *
12286169 TGT-AAGTCCTATCTCCCTAGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCT
116 TGTGAA-TCCTATCTCCCTGGTCAGCAGT-GGATAGGTTGAAGATTGTGAATCC
* * * * *
12286222 TATCTCCCTG-GT-ATCAATGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATG
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTG
** * * *
12286285 GAATAGGTGAA-TCATATCTCCCTGGTCAGCAGTGGACTTGGTTTAAGATTGTGAATCCTATCTC
66 GAATAGGTGAAGTCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
* * * **
12286349 CCTGGTCAGCAATGGAATAGGTTAAAGACTAAGAATCC
131 CCTGGTCAGCAGTGG-ATAGGTTGAAGATTGTGAATCC
* * * * * ** * * * *
12286387 TATGTCCTTGAG-CAGCAGTGGAGTACGTTGAAAATTACAAATCTTATCTCCCAAAG-CAGTAGT
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC-TAGTCAGCAGT
* * * * * ** *** *
12286450 AGG-GTAGATTTAAGACACTGGCCTTATATCCCTATTCTTTAGTGGAATAGGTTGAAGATT-TTA
65 -GGAATAG--GT--GA-A--GTCC-GATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA
* * * *
12286513 AGTCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCA
121 A-TCCTATCTCCCTGGTCAGCAGTGG-ATAGGTTGAAGATTGTGAATCC
* * *
12286562 TATCTCCCTG-GCCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATG
1 TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTG
* * *
12286626 GAATAGGTGAA-TCCTATCTCCCTAGCCAGCAGTGGAATAGGTT
66 GAATAGGTGAAGTCCGATCTCCCTGGTCAGCAGTGGAATAGGTT
12286669 AGAGATTTTG
Statistics
Matches: 1960, Mismatches: 446, Indels: 490
0.68 0.15 0.17
Matches are distributed among these distances:
156 58 0.03
157 3 0.00
158 1 0.00
159 9 0.00
160 132 0.07
161 20 0.01
162 4 0.00
163 3 0.00
164 17 0.01
165 159 0.08
166 521 0.27
167 42 0.02
168 27 0.01
169 45 0.02
170 89 0.05
171 20 0.01
172 30 0.02
173 29 0.01
174 41 0.02
175 305 0.16
176 348 0.18
177 44 0.02
178 13 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (167 bp):
TATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTG
GAATAGGTGAAGTCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
CCTGGTCAGCAGTGGATAGGTTGAAGATTGTGAATCC
Found at i:12284935 original size:78 final size:78
Alignment explanation
Indices: 12284833--12285182 Score: 484
Period size: 78 Copynumber: 4.4 Consensus size: 78
12284823 CCACTAGCCT
12284833 TATCTCCCTGGTCAGTAGTGGAATAGGTGAATCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTGAATCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGA
*
12284898 AGATTGCAAGTCC
66 AGATTGTAAGTCC
* * * * *
12284911 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAACAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGG-T---GA-----A-TCCGATCTCCCTAGTCAGCAGTGG
* *
12284976 AATAGGTTGAAGATTGTAACTCA
56 AATAGGTTGAAGATTGTAAGTCC
* * *
12284999 TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCCATCTCCCTGGTCAGCAGTGGAATAGGTTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTGAATCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGA
12285064 AGATTGTAAGTCC
66 AGATTGTAAGTCC
12285077 TATCTCCCTGGTCAGTAGTGGAATAGGTGAATCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTGAATCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGA
* *
12285142 AGATTTTGAGTCC
66 AGATTGTAAGTCC
*
12285155 TATCTCCCTGGTCAGTAATGGAATAGGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGT
12285183 TGAAGATTGT
Statistics
Matches: 243, Mismatches: 19, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
78 168 0.69
79 2 0.01
82 2 0.01
84 2 0.01
87 2 0.01
88 67 0.28
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTGAATCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGA
AGATTGTAAGTCC
Found at i:12285043 original size:34 final size:34
Alignment explanation
Indices: 12285000--12285138 Score: 152
Period size: 34 Copynumber: 3.8 Consensus size: 34
12284990 TGTAACTCAT
12285000 ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCC
1 ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCC
*
12285034 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCT
1 ATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCCC
* *
12285078 ATCTCCCTGGTCAGTAGTGGAATAGGTGAATCCG
1 ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCC
*
12285112 ATCTCCCTAGTCAGCAGTGGAATAGGT
1 ATCTCCCTGGTCAGCAGTGGAATAGGT
12285139 TGAAGATTTT
Statistics
Matches: 90, Mismatches: 5, Indels: 20
0.78 0.04 0.17
Matches are distributed among these distances:
34 52 0.58
35 2 0.02
36 2 0.02
38 2 0.02
40 2 0.02
42 2 0.02
43 2 0.02
44 26 0.29
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (34 bp):
ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCC
Found at i:12285137 original size:497 final size:508
Alignment explanation
Indices: 12284448--12285446 Score: 1511
Period size: 497 Copynumber: 2.0 Consensus size: 508
12284438 CCACTAGCCT
** * * *
12284448 TATCTCCCCGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTGTCTCCCTAGTCAGCAGTGG
1 TATCTCCCCGGTCAACAGTGGAATAGGTTGAAGATTGTAACTCATATCTCCCTAGTCAGCAGTGG
*
12284513 TATAGGTTGAAGATTCTGAGTCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATTGTAAGT
66 AATAGGTTGAAGATTC---G-CCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATTGTAAGT
* *
12284578 CCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGATCTCCCTGGTGAGCAGTAGAATAGGTT
127 CCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGATCTCCCTAGTCAGCAGTAGAATAGGTT
*
12284643 GAAGATTATGAATCCTATCTCCATGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTC
192 GAAGATTATGAATCCTATCTCCATGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATCTC
*
12284708 CCTGAGCACCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAACAGA
257 CCTGAGCACCAGTGGAGTAGGTTGAAAATTACAGATCTTATCGCCCAAAGCAGTAGTGGAACAGA
12284773 TGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAAATTTCAGCCACTAGCCTTATCT
322 TGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAAATTTCAGCCACTAGCCTTATCT
12284838 CCCTGGTCAGTAGTGGAATA-G-G-TG-AA-TCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGA
387 CCCTGGTCAGTAGTGGAATAGGAGATGTAAGTCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGA
* *
12284898 AGATTG-CAAGTCCTATCTCCCT-AGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCC
452 AAATTGTCAA-TCCTATATCCCTGAG-CAGCAGTGGAATAGGTTGAAGATTCTGAGTCC
* *
12284955 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAACTCATATCTCCCTGGTCAGCAGTGG
1 TATCTCCCCGGTCAACAGTGGAATAGGTTGAAGATTGTAACTCATATCTCCCTAGTCAGCAGTGG
* * * *
12285020 AATAGG-TG-A-A-TC-CC-ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
66 AATAGGTTGAAGATTCGCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATTGTAAGTCCTA
* *
12285079 TCTCCCTGGTCAGTAGTGGAATAGGTGAATCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGAAG
131 TCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGATCTCCCTAGTCAGCAGTAGAATAGGTTGAAG
* * * * *
12285144 ATTTTGAGTCCTATCTCCCTGGTCAGTAATGGAATAGGTTGAAGATTGTGAATCCTATCTGCCTG
196 ATTATGAATCCTATCTCCATGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
*
12285209 AGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCGCCCAAAGCAGTAGTGGAACAGATGAA
261 AGCACCAGTGGAGTAGGTTGAAAATTACAGATCTTATCGCCCAAAGCAGTAGTGGAACAGATGAA
* * * *
12285274 GATGGCGAATCTTATCTTCCCATGGTAGTAGGGAAGAAGATTTCAGCCACTAGTCTTATCTCCCT
326 GACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAAATTTCAGCCACTAGCCTTATCTCCCT
*
12285339 GGTCAGTAGTGGAATAGGTTGGAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTG
391 GGTCAGTAGTGGAATA----GGAGA-TGTAAGTCCGATCTCCCTAGTCAGCAGTGGAATAGGTTG
* *
12285404 AAAATTGTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTT
451 AAAATTGTCAATCCTATATCCCTGAGCAGCAGTGGAATAGGTT
12285447 TGTAAGTCCT
Statistics
Matches: 447, Mismatches: 33, Indels: 24
0.89 0.07 0.05
Matches are distributed among these distances:
497 301 0.67
498 2 0.00
502 1 0.00
503 3 0.01
504 1 0.00
505 3 0.01
506 4 0.01
507 128 0.29
508 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (508 bp):
TATCTCCCCGGTCAACAGTGGAATAGGTTGAAGATTGTAACTCATATCTCCCTAGTCAGCAGTGG
AATAGGTTGAAGATTCGCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATTGTAAGTCCTA
TCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGATCTCCCTAGTCAGCAGTAGAATAGGTTGAAG
ATTATGAATCCTATCTCCATGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
AGCACCAGTGGAGTAGGTTGAAAATTACAGATCTTATCGCCCAAAGCAGTAGTGGAACAGATGAA
GACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAAATTTCAGCCACTAGCCTTATCTCCCT
GGTCAGTAGTGGAATAGGAGATGTAAGTCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGAAAAT
TGTCAATCCTATATCCCTGAGCAGCAGTGGAATAGGTTGAAGATTCTGAGTCC
Found at i:12285496 original size:34 final size:34
Alignment explanation
Indices: 12285410--12285517 Score: 128
Period size: 34 Copynumber: 3.1 Consensus size: 34
12285400 GTTGAAAATT
* *
12285410 GTGAATCCTATATCCCTGAG-CAGCAGTGGAGTAG
1 GTGAATCCTATCTCCCTG-GTCAGCAGTGGAATAG
*
12285444 GTTTGTAAGTCCTATCTCCCTGGTCAGCAATGGAATAG
1 G--TG-AA-TCCTATCTCCCTGGTCAGCAGTGGAATAG
*
12285482 GTGAATCCTATCTCCCTGGTCACCAGTGGAATAG
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAG
12285516 GT
1 GT
12285518 TCAAGATTGT
Statistics
Matches: 64, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
34 30 0.47
35 2 0.03
36 4 0.06
37 3 0.05
38 25 0.39
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (34 bp):
GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAG
Found at i:12285594 original size:379 final size:372
Alignment explanation
Indices: 12284950--12285847 Score: 1187
Period size: 379 Copynumber: 2.4 Consensus size: 372
12284940 GAAGATTCTG
* ** *
12284950 AGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAACTCATATCTCCCTGGTCAGC
1 AGTCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGC
*
12285015 AGTGGAATAGGTGAATCCCATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTAT
66 AGTGGAATAGGTGAATCCCATATCCCTGGTCAGCAGTGGAATAGGTT----ATTGTAAGTCCTAT
* * * *
12285080 CTCCCTGGTCAGTAGTGGAATAGGTGAATCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGA
127 CTCCCTGGTCAGCAATGGAATAGGTGAATCCGATCTCCCTAGTCACCAGTGGAATAGGTTCAAGA
* * * *
12285145 TTTTGAGTCCTATCTCCCTGGTCAGTAATGGAATAGGTTGAAGATTGTGAATCCTATCTGCCTGA
192 TTGTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATCTGCCTCA
12285210 GCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCGCCCAAAGCAGTAGTGGAACAGAT-GAA
257 GCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCGCCCAAAGCAGTAGTGGAACAGATCGAA
* * * * *
12285274 GATGGCGAATCTTATCTTCCCATGGTAGTAGGGAAGAAGATTTCAGCCACT
322 GACGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACA
* * *
12285325 AGTCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGGAGATTGTAAGTCCTATCTCCCTAGTCAGC
1 AGTCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGC
* *
12285390 AGTGGAATAGGTTGAAAATTGTGAATCCTATATCCCTGAG-CAGCAGTGGAGTAGG-T-TTGTAA
66 AGTGGAATA----G------GTGAATCCCATATCCCTG-GTCAGCAGTGGAATAGGTTATTGTAA
* *
12285452 GTCCTATCTCCCTGGTCAGCAATGGAATAGGTGAATCCTATCTCCCTGGTCACCAGTGGAATAGG
120 GTCCTATCTCCCTGGTCAGCAATGGAATAGGTGAATCCGATCTCCCTAGTCACCAGTGGAATAGG
* *
12285517 TTCAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCTTATG
185 TTCAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATC
** * * *
12285582 TTTCTCAGCAGCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCTCCCAAAGCAGTAGTGGAGCA
250 TGCCTCAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCGCCCAAAGCAGTAGTGGAACA
*
12285647 GATCGAAGACGGTGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACA
315 GATCGAAGACGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACA
* * *
12285705 AGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGC
1 AGTCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGC
** * * * *
12285770 AGTCAAATTA-GTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCCT
66 AGTGGAA-TAGGTGAATCCCATATCCCTGGTCAGCAGTGGAATAGGTT----ATTGT-AAGTCCT
12285833 ATCTCCCTGGTCAGC
125 ATCTCCCTGGTCAGC
12285848 TGTGTAATAA
Statistics
Matches: 457, Mismatches: 45, Indels: 41
0.84 0.08 0.08
Matches are distributed among these distances:
369 1 0.00
370 29 0.06
371 1 0.00
375 67 0.15
376 23 0.05
377 2 0.00
379 188 0.41
380 112 0.25
381 2 0.00
384 1 0.00
385 30 0.07
386 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (372 bp):
AGTCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGC
AGTGGAATAGGTGAATCCCATATCCCTGGTCAGCAGTGGAATAGGTTATTGTAAGTCCTATCTCC
CTGGTCAGCAATGGAATAGGTGAATCCGATCTCCCTAGTCACCAGTGGAATAGGTTCAAGATTGT
GAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATCTGCCTCAGCAG
CAGTGGAGTAGGTTGAAAATTACAGATCTTATCGCCCAAAGCAGTAGTGGAACAGATCGAAGACG
GCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACA
Found at i:12286350 original size:78 final size:77
Alignment explanation
Indices: 12286222--12286370 Score: 219
Period size: 78 Copynumber: 1.9 Consensus size: 77
12286212 TTGTGAGTCT
*
12286222 TATCTCCCTGGTATCAATGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGGA
1 TATCTCCCTGGTAGCAATGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGGA
12286287 ATAGGTGAATCA
66 ATAGGTGAATCA
* * * * *
12286299 TATCTCCCTGGTCAGCAGTGGACTTGGTTTAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAATG
1 TATCTCCCTGGT-AGCAATGGAATAGGTTGAAGATTGT-AAGTACTATCTCCCTGGTCAGCAATG
12286363 GAATAGGT
64 GAATAGGT
12286371 TAAAGACTAA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
77 12 0.19
78 50 0.78
79 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (77 bp):
TATCTCCCTGGTAGCAATGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGGA
ATAGGTGAATCA
Found at i:12286646 original size:34 final size:34
Alignment explanation
Indices: 12286603--12286667 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
12286593 AGATTGTAAG
* *
12286603 TCCTATCTCCCTGGTCAGCAATGGAATAGGTGAA
1 TCCTATCTCCCTAGCCAGCAATGGAATAGGTGAA
*
12286637 TCCTATCTCCCTAGCCAGCAGTGGAATAGGT
1 TCCTATCTCCCTAGCCAGCAATGGAATAGGT
12286668 TAGAGATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (34 bp):
TCCTATCTCCCTAGCCAGCAATGGAATAGGTGAA
Found at i:12286930 original size:78 final size:78
Alignment explanation
Indices: 12286801--12286944 Score: 211
Period size: 78 Copynumber: 1.8 Consensus size: 78
12286791 CCACTAGCCT
* * * *
12286801 TATCTCCCTGGTCGGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT-AGTCAGCAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTAAGTCCAATCTCCCTGAG-CAGCAGTG
12286865 GAATAGGTGAATCA
65 GAATAGGTGAATCA
*
12286879 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTGAA-TCCAATCTCCCTGAGCAGTAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGT-AAGTCCAATCTCCCTGAGCAGCAGTG
12286943 GA
65 GA
12286945 GAAGGTTGCA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
78 55 0.93
79 4 0.07
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (78 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTAAGTCCAATCTCCCTGAGCAGCAGTGG
AATAGGTGAATCA
Found at i:12287288 original size:264 final size:254
Alignment explanation
Indices: 12286677--12287499 Score: 986
Period size: 254 Copynumber: 3.2 Consensus size: 254
12286667 TTAGAGATTT
* *
12286677 TGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATC
1 TGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATC
* *
12286742 GAAGACAGCGATTCTTATATTCCCAAGGTAGTAAGGAAGCAGATTTAAGCCACTAGCCTTATCTC
66 GAAGACGGCGATTCTTATATTCCCAAGGTAGTAAGGAAGAAGATTTAAGCCACTAGCCTTATCTC
* * * * *
12286807 CCTGGTCGGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGG
131 ACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCATGGTCAGCAGTGGAATAGG
** * *
12286872 TGAATCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTGAATCCAATCTCCC
196 TGAATCATATCTCCCTCATCAACAGTGAAATAGGTTGAAAATTGTGAATCCAATCTCCC
* * * * *
12286931 TGAGCAGTAGTGGAGAAGGTTGCAAATTATAGATCTGATCTCCCTAAGCATTAGTAGAGCAGATC
1 TGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATC
* * * * *
12286996 GAACACGACGATTCTTATATTCCCAAGGTAGTAAGGAAGTAGACTTAAGCCACTAGCCTTATTTC
66 GAAGACGGCGATTCTTATATTCCCAAGGTAGTAAGGAAGAAGATTTAAGCCACTAGCCTTATCTC
* *
12287061 ACTGGTTAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCATGGTCAGCAGTGGAATAGA
131 ACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCATGGTCAGCAGTGGAATAG-
* * *
12287126 TTGAAGATTGCGAGTCCTATCTCCCTCATCAATAGTGAAATAGGTTGAAAATTGTGAATCC-TTG
195 GTG-A-A-T-C-A----TATCTCCCTCATCAACAGTGAAATAGGTTGAAAATTGTGAATCCAAT-
12287190 CTCCC
250 CTCCC
* * * * ** *
12287195 TGAGCAGCAGTGGAGTAGATTAAAAACTACAGAAGTTATCTCCCTAAGCAGTAGTAGAGTAGATC
1 TGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATC
* * *
12287260 GAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTC
66 GAAGACGGCGATTCTTATATTCCCAAGGTAGTAAGGAAGAAGATTTAAGCCACTAGCCTTATCTC
* * *
12287325 TCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCA-GGTCAGCAGTGAAATAG
131 ACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCT-CCATGGTCAGCAGTGGAATAG
* ** ** * * * *
12287389 GTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCTC
195 GTGAATCATATCTCCCTCATCAACAGTGAAATAGGTTGAAAATTGTGAATCCAATCTCCC
* * * * ** * *
12287449 TG-GTCAGTAGTGTAATAGGTTGTATATTGTAAATCCTATCTCCCTAAGCAG
1 TGAG-CAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAG
12287500 CAGTGTAGTA
Statistics
Matches: 481, Mismatches: 74, Indels: 28
0.83 0.13 0.05
Matches are distributed among these distances:
253 1 0.00
254 253 0.53
255 3 0.01
256 1 0.00
257 1 0.00
258 1 0.00
259 2 0.00
260 2 0.00
261 1 0.00
262 1 0.00
263 3 0.01
264 209 0.43
265 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (254 bp):
TGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATC
GAAGACGGCGATTCTTATATTCCCAAGGTAGTAAGGAAGAAGATTTAAGCCACTAGCCTTATCTC
ACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCATGGTCAGCAGTGGAATAGG
TGAATCATATCTCCCTCATCAACAGTGAAATAGGTTGAAAATTGTGAATCCAATCTCCC
Found at i:12287403 original size:298 final size:299
Alignment explanation
Indices: 12287099--12287692 Score: 850
Period size: 298 Copynumber: 2.0 Consensus size: 299
12287089 TTGTAAGTCT
*
12287099 TATCTCCATGGTCAGCAGTGGAATAGATTGAAGATTGCGAGTCCTATCTCCCTCATCAATAGTGA
1 TATCTCCATGGTCAGCAGTGGAATAGATTGAAGATTGCGAATCCTATCTCCCTCATCAATAGTGA
* *
12287164 AATAGGTTGAAAATTGTGAATCCT-TGCTCCCTGAGCAGCAGTGGAGTAGATTAAAAACTACAGA
66 AATAGGTTGAAAATTGTAAATCCTAT-CTCCCTAAGCAGCAGTGGAGTAGATTAAAAACTACAGA
* * *
12287228 AGTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTA
130 ACTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGACAGCGAATCTTATCTTCCCAAGGTAGTA
* * * * *
12287293 GGGAAGAAGATTTAAGCCACTAGCCTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTA
195 GGCAAGAAGATATAAGCCACTAGCCTTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTATA
12287358 AGTCATATCTCCCAGGTCAGCAGTGAAATAGG-TGAATCC
260 AGTCATATCTCCCAGGTCAGCAGTGAAATAGGATGAATCC
* * * * * * ** * *
12287397 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCTCTGGTCAGTAGTGT
1 TATCTCCATGGTCAGCAGTGGAATAGATTGAAGATTGCGAATCCTATCTCCCTCATCAATAGTGA
* * * * * * *
12287462 AATAGGTTGTATATTGTAAATCCTATCTCCCTAAGCAGCAGTGTAGTAGGTTGAAAATTACAGAT
66 AATAGGTTGAAAATTGTAAATCCTATCTCCCTAAGCAGCAGTGGAGTAGATTAAAAACTACAGAA
* *
12287527 CTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGATAGCGATTCTTATCTTCCCAAGGTAGTAG
131 CTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGACAGCGAATCTTATCTTCCCAAGGTAGTAG
* *
12287592 GCAAGCATATATAAGCCACTAGCCTTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTATAA
196 GCAAGAAGATATAAGCCACTAGCCTTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTATAA
* * *
12287657 GTCGTATCTCCCTGGTCAGCAGTGGAATAGGATGAA
261 GTCATATCTCCCAGGTCAGCAGTGAAATAGGATGAA
12287693 GATTGTAAGT
Statistics
Matches: 259, Mismatches: 35, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
298 254 0.98
299 5 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (299 bp):
TATCTCCATGGTCAGCAGTGGAATAGATTGAAGATTGCGAATCCTATCTCCCTCATCAATAGTGA
AATAGGTTGAAAATTGTAAATCCTATCTCCCTAAGCAGCAGTGGAGTAGATTAAAAACTACAGAA
CTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGACAGCGAATCTTATCTTCCCAAGGTAGTAG
GCAAGAAGATATAAGCCACTAGCCTTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTATAA
GTCATATCTCCCAGGTCAGCAGTGAAATAGGATGAATCC
Found at i:12287454 original size:78 final size:78
Alignment explanation
Indices: 12287319--12287468 Score: 212
Period size: 78 Copynumber: 1.9 Consensus size: 78
12287309 CCACTAGCCT
* *
12287319 TATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCAGGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTGAAGTCATATCTCCCAGGTCAGCAGTGA
12287384 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * *
12287397 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCTCTGGTCAGTAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-TGAAGTCATATCTCCCAGGTCAGCAGTG
*
12287461 TAATAGGT
65 AAATAGGT
12287469 TGTATATTGT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
78 60 0.95
79 3 0.05
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTGAAGTCATATCTCCCAGGTCAGCAGTGA
AATAGGTGAATCC
Found at i:12287667 original size:518 final size:518
Alignment explanation
Indices: 12286677--12287726 Score: 1178
Period size: 518 Copynumber: 2.0 Consensus size: 518
12286667 TTAGAGATTT
* * * * * *
12286677 TGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATC
1 TGAGCAGCAGTGGAGTAGATTAAAAACTACAGAACCTATCTCCCTAAGCAGTAGTAGAGCAGATC
* *
12286742 GAAGACAGCGATTCTTATATTCCCAAGGTAGTAAGGAAGCAGATTTAAGCCACTAGCCTTATCTC
66 GAAGACAGCGAATCTTATATTCCCAAGGTAGTAAGGAAGAAGATTTAAGCCACTAGCCTTATCTC
* * *
12286807 CCTGGTCGGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGG
131 CCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAGTGAAATAGG
12286872 TGAATCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTGAATCCAATCTCCCTGAGCA
196 TGAATCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTGAATCCAATCTCCCTGAGCA
* ** *
12286937 GTAGTGGAGAAGGTTGCAAATTATAGATCTGATCTCCCTAAGCATTAGTAGAGCAGATCGAACAC
261 GTAGTGGAGAAGGTTGCAAATTATAAATCTGATCTCCCTAAGCAGCAGTAGAGCAGATCGAAAAC
* * * * * * *
12287002 GACGATTCTTATATTCCCAAGGTAGTAAGGAAGTAGACTTAAGCCACTAGCCTTATTTCACTGGT
326 GACGATTCTTATACTCCCAAAGCAGTAAGGAAGTAGACTGAAGACACGAGCCTTATTTCACAGGT
* * * *** * *
12287067 TAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCATGGTCAGCAGTGGAATAGATTGAAG
391 TAGTAGTGCAACAGATTGAAGACACTAAGCCTTATCTCCATAGTCAGCAGTGGAATAGATTGAAG
* * * *
12287132 ATTGCGAGTCCTATCTCCCTCATCAATAGTGAAATAGGTTGAAAATTGTGAA-TCCT-TGCTCCC
456 ATTACAAGTCCTATCTCCCTCATCAACAGTGAAATAGGATGAAAATTGT-AAGTCCTAT-CTCCC
** *
12287195 TGAGCAGCAGTGGAGTAGATTAAAAACTACAGAAGTTATCTCCCTAAGCAGTAGTAGAGTAGATC
1 TGAGCAGCAGTGGAGTAGATTAAAAACTACAGAACCTATCTCCCTAAGCAGTAGTAGAGCAGATC
* * *
12287260 GAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTC
66 GAAGACAGCGAATCTTATATTCCCAAGGTAGTAAGGAAGAAGATTTAAGCCACTAGCCTTATCTC
* *
12287325 TCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCC-AGGTCAGCAGTGAAATAG
131 CCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTA-GTCAGCAGTGAAATAG
* * * * * *
12287389 GTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCTCTG-GT
195 GTGAATCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTGAATCCAATCTCCCTGAG-
* * * * * * *
12287453 CAGTAGTGTA-ATAGGTTGTATATTGTAAATCCT-ATCTCCCTAAGCAGCAGT-GTAGTAGGTTG
259 CAGTAGTGGAGA-AGGTTGCAAATTATAAAT-CTGATCTCCCTAAGCAGCAGTAG-AGCAGATCG
** * * **
12287515 AAAATTACAGA-TCTTAT-CTCCCAAAGCAGT-AGTAGAGTAGA-TCGAAGATAGCGATTCTTAT
321 AAAACGAC-GATTCTTATACTCCCAAAGCAGTAAGGA-AGTAGACT-GAAGACA-CGAGCCTTAT
* * * * *
12287576 CTTCCCAAGG-TAGTAG-GCAAGCATATAT-AAGCCACT-AGCCTTATCTCCCTAGTCAGTAGTG
382 -TTCAC-AGGTTAGTAGTGCAA-CAGAT-TGAAGACACTAAGCCTTATCTCCATAGTCAGCAGTG
* * * ** * * *
12287637 GAATAGGTTGAAGATTATAAGTCGTATCTCCCTGGTCAGCAGTGGAATAGGATGAAGATTGTAAG
443 GAATAGATTGAAGATTACAAGTCCTATCTCCCTCATCAACAGTGAAATAGGATGAAAATTGTAAG
12287702 TCCTATCTCCC
508 TCCTATCTCCC
12287713 TG-GTCAGCAGTGGA
1 TGAG-CAGCAGTGGA
12287727 ATAGGTCAAT
Statistics
Matches: 442, Mismatches: 74, Indels: 32
0.81 0.14 0.06
Matches are distributed among these distances:
516 4 0.01
517 27 0.06
518 387 0.88
519 21 0.05
520 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (518 bp):
TGAGCAGCAGTGGAGTAGATTAAAAACTACAGAACCTATCTCCCTAAGCAGTAGTAGAGCAGATC
GAAGACAGCGAATCTTATATTCCCAAGGTAGTAAGGAAGAAGATTTAAGCCACTAGCCTTATCTC
CCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAGTGAAATAGG
TGAATCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTGAATCCAATCTCCCTGAGCA
GTAGTGGAGAAGGTTGCAAATTATAAATCTGATCTCCCTAAGCAGCAGTAGAGCAGATCGAAAAC
GACGATTCTTATACTCCCAAAGCAGTAAGGAAGTAGACTGAAGACACGAGCCTTATTTCACAGGT
TAGTAGTGCAACAGATTGAAGACACTAAGCCTTATCTCCATAGTCAGCAGTGGAATAGATTGAAG
ATTACAAGTCCTATCTCCCTCATCAACAGTGAAATAGGATGAAAATTGTAAGTCCTATCTCCC
Found at i:12287740 original size:298 final size:300
Alignment explanation
Indices: 12287062--12287791 Score: 847
Period size: 298 Copynumber: 2.4 Consensus size: 300
12287052 CCTTATTTCA
* * * * *
12287062 CTGGTTAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCATGGTCAGCAGTGGAATAGAT
1 CTGGTCAGCAGTGGAATAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATA-A-
* **
12287127 TGAAGATTGCGAGTCCTATCTCCCTCATCAATAGTGAAATAGGTTGAAAATTGTGAATCCT-TGC
64 -G-AG--T-C-AATCCTATCTCCCTGGTCAATAGTGAAATAGGTTGAAAATTGTGAATCCTAT-C
* * *
12287191 TCCCTGAGCAGCAGTGGAGTAGATTAAAAACTACAGAAGTTATCTCCCTAAGCAGTAGTAGAGTA
122 TCCCTAAGCAGCAGTGGAGTAGATTAAAAACTACAGAACTTATCTCCCAAAGCAGTAGTAGAGTA
* * *
12287256 GATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTA
187 GATCGAAGACAGCGAATCTTATCTTCCCAAGGTAGTAGGCAAGAAGATATAAGCCACTAGCCTTA
* * *
12287321 TCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCC
252 TCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCC
* * * *
12287370 CAGGTCAGCAGT-G-A-A--AT--AG-GTG-AA-TCCTATCTCCCTTGTCAGTAGTGGAATAGGT
1 CTGGTCAGCAGTGGAATAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG-A-A---
* * * * * * *
12287425 TGAAGATTGTGAATCCTATCTCTCTGGTCAGTAGTGTAATAGGTTGTATATTGTAAATCCTATCT
61 T-AAGA--GTCAATCCTATCTCCCTGGTCAATAGTGAAATAGGTTGAAAATTGTGAATCCTATCT
* * * * *
12287490 CCCTAAGCAGCAGTGTAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTAG
123 CCCTAAGCAGCAGTGGAGTAGATTAAAAACTACAGAACTTATCTCCCAAAGCAGTAGTAGAGTAG
* * * *
12287555 ATCGAAGATAGCGATTCTTATCTTCCCAAGGTAGTAGGCAAGCATATATAAGCCACTAGCCTTAT
188 ATCGAAGACAGCGAATCTTATCTTCCCAAGGTAGTAGGCAAGAAGATATAAGCCACTAGCCTTAT
*
12287620 CTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCGTATCTCC
253 CTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCC
12287668 CTGGTCAGCAGTGGAATAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAAT-AG-
1 CTGGTCAGCAGTGGAATAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAAGA
* * *
12287731 GTCAATCCTATCTCCCTGGTCACTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCT
66 GTCAATCCTATCTCCCTGGTCAATAGTGAAATAGGTTGAAAATTGTGAATCCTATCTCCCT
12287792 TGTCAGCAAT
Statistics
Matches: 354, Mismatches: 49, Indels: 48
0.78 0.11 0.11
Matches are distributed among these distances:
298 287 0.81
299 5 0.01
300 6 0.02
301 6 0.02
302 1 0.00
303 6 0.02
304 1 0.00
305 3 0.01
306 4 0.01
307 4 0.01
308 31 0.09
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (300 bp):
CTGGTCAGCAGTGGAATAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAAGA
GTCAATCCTATCTCCCTGGTCAATAGTGAAATAGGTTGAAAATTGTGAATCCTATCTCCCTAAGC
AGCAGTGGAGTAGATTAAAAACTACAGAACTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGA
CAGCGAATCTTATCTTCCCAAGGTAGTAGGCAAGAAGATATAAGCCACTAGCCTTATCTCCCTAG
TCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCC
Found at i:12287745 original size:34 final size:34
Alignment explanation
Indices: 12287702--12287766 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
12287692 AGATTGTAAG
12287702 TCCTATCTCCCTGGTCAGC-AGTGGAATAGGTCAA
1 TCCTATCTCCCTGGTCA-CTAGTGGAATAGGTCAA
12287736 TCCTATCTCCCTGGTCACTAGTGGAATAGGT
1 TCCTATCTCCCTGGTCACTAGTGGAATAGGT
12287767 TGAAGATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 1 0.03
34 29 0.97
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (34 bp):
TCCTATCTCCCTGGTCACTAGTGGAATAGGTCAA
Found at i:12287790 original size:78 final size:78
Alignment explanation
Indices: 12287661--12287810 Score: 241
Period size: 78 Copynumber: 1.9 Consensus size: 78
12287651 TTATAAGTCG
*
12287661 TATCTCCCTGGTCAGCAGTGGAATAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATGG
12287726 AATAGGTCAATCC
66 AATAGGTCAATCC
* *
12287739 TATCTCCCTGGTCA-CTAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTTGTCAGCAAT
1 TATCTCCCTGGTCAGC-AGTGGAATAGGATGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAAT
12287802 GGAATAGGT
64 GGAATAGGT
12287811 TGAAGATTGT
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
77 1 0.01
78 64 0.96
79 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (78 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATGG
AATAGGTCAATCC
Found at i:12287843 original size:122 final size:122
Alignment explanation
Indices: 12287617--12287854 Score: 338
Period size: 122 Copynumber: 2.0 Consensus size: 122
12287607 CCACTAGCCT
* * *
12287617 TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCGTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTAGTCACTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAATGG
12287682 AATAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTCAATCC
66 AATAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTCAATCC
* * *
12287739 TATCTCCCTGGTCACTAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTTGTCAGCAATG
1 TATCTCCCTAGTCACTAGTGGAATAGGTTGAAGATTAT-AAGTCCTATCTCCCTGGTCAGCAATG
* * * *
12287803 GAATAGGTTGAAGATTGTGAA-TCCTATGTTCCTGAG-CAGCAGTGGAGTAGGT
65 GAATAGGATGAAGATTGT-AAGTCCTATCTCCCTG-GTCAGCAGTGGAATAGGT
12287855 TGAAATTTAC
Statistics
Matches: 103, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
122 98 0.95
123 5 0.05
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (122 bp):
TATCTCCCTAGTCACTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAATGG
AATAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTCAATCC
Found at i:12288041 original size:639 final size:640
Alignment explanation
Indices: 12287099--12288331 Score: 1997
Period size: 639 Copynumber: 1.9 Consensus size: 640
12287089 TTGTAAGTCT
* * *
12287099 TATCTCCATGGTCAGCAGTGGAATAGATTGAAGATTGCGAGTCCTATCTCCCTCATCAATAGTGA
1 TATCTCCATGGTCAGCAGTGGAATAGATTGAAGATTGCGAATCCTATCTCCCTCATCAACAATGA
12287164 AATAGGTTGAAAATTGTGAATCCTTGCTCCCTGAGCAGCAGTGGAGTAGATTAAAAACTACAGAA
66 AATAGGTTGAAAATTGTGAATCCTTGCTCCCTGAGCAGCAGTGGAGTAGATTAAAAACTACAGAA
* * **
12287229 GTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAG
131 CTTATCTCCCTAAGCAATAGTAGAACAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAG
12287294 GGAAGAAGATTTAAGCCACTAGCCTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAA
196 GGAAGAAGATTTAAGCCACTAGCCTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAA
12287359 GTCATATCTCCCAGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGG
261 GTCATATCTCCCAGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGG
* * *
12287424 TTGAAGATTGTGAATCCTATCTCTCTGGTCAGTAGTGTAATAGGTTGTATATTGTAAATCCTATC
326 TTGAAGATTGTGAATCCTATCTCTCTAGTCAGTAATGTAATAGGTTGTAGATTGTAAATCCTATC
* * * *
12287489 TCCCTAAGCAGCAGTGTAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTA
391 TCCCTAAGCAGCAGTGGAGAAGGTTGAAAATTACAAATCTTATCTCCCAAAGCAGTAGTAGACTA
* * * *
12287554 GATCGAAGATAGCGATTCTTATCTTCCCAAGGTAGTAGGCAAGCATATATAAGCCACTAGCCTTA
456 GATCGAAGACAGCGATTCTTAACTTCCCAAGGTAGCAGGCAAGCAGATATAAGCCACTAGCCTTA
* * *
12287619 TCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCGTATCTCCCTGGTCAGCAGTGGAA
521 TCTCCCTAGTCAGTAGTGGAATAGGCTGAAGATTATAAGTCCTATCTCCCTAGTCAGCAGTGGAA
12287684 TAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTCAATCC
586 TAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTCAATCC
* * * ** *
12287739 TATCTCCCTGGTCA-CTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTTGTCAGCAATG
1 TATCTCCATGGTCAGC-AGTGGAATAGATTGAAGATTGCGAATCCTATCTCCCTCATCAACAATG
* * * * * **
12287803 GAATAGGTTGAAGATTGTGAATCCTATG-TTCCTGAGCAGCAGTGGAGTAGGTTGAAATTTACAG
65 AAATAGGTTGAAAATTGTGAATCCT-TGCTCCCTGAGCAGCAGTGGAGTAGATTAAAAACTACAG
* * *
12287867 ATCTTATCT-CTTAAAGCAATAGTGGAACAGAT-GAAGACGGCGAATCTTATCTTCCCAAGGTAG
129 AACTTATCTCCCT-AAGCAATAGTAGAACAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAG
*
12287930 TAGGGAAGGAGATTTAAGCCACTAGCCTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTT
193 TAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTT
*
12287995 TAAGTCATATCTCCCAGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTTGTGGAAT
258 TAAGTCATATCTCCCAGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAAT
12288060 AGGTTGAAGATTGTGAATCCTATCTCTCTAGTCAGTAATGTAATAGGTTGTAGATTGTAAATCCT
323 AGGTTGAAGATTGTGAATCCTATCTCTCTAGTCAGTAATGTAATAGGTTGTAGATTGTAAATCCT
*
12288125 ATCTCCCTAAGCAGTAGTGGAGAAGGTTGAAAATTACAAATCTTATCTCCCAAAGCAGTAGTAGA
388 ATCTCCCTAAGCAGCAGTGGAGAAGGTTGAAAATTACAAATCTTATCTCCCAAAGCAGTAGTAGA
* * *
12288190 CTAGATCGAAGACGGCGATTCTTAACTTCCCAAGGTAGCAGGGAAGCAGATTTAAGCCACTAGCC
453 CTAGATCGAAGACAGCGATTCTTAACTTCCCAAGGTAGCAGGCAAGCAGATATAAGCCACTAGCC
* *
12288255 TTATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTG
518 TTATCTCCCTAGTCAGTAGTGGAATAGGCTGAAGATTATAAGTCCTATCTCCCTAGTCAGCAGTG
*
12288320 GAATAGGTTGAA
583 GAATAGGATGAA
12288332 AATTACAAAT
Statistics
Matches: 544, Mismatches: 46, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
639 413 0.76
640 129 0.24
641 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (640 bp):
TATCTCCATGGTCAGCAGTGGAATAGATTGAAGATTGCGAATCCTATCTCCCTCATCAACAATGA
AATAGGTTGAAAATTGTGAATCCTTGCTCCCTGAGCAGCAGTGGAGTAGATTAAAAACTACAGAA
CTTATCTCCCTAAGCAATAGTAGAACAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAG
GGAAGAAGATTTAAGCCACTAGCCTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAA
GTCATATCTCCCAGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGG
TTGAAGATTGTGAATCCTATCTCTCTAGTCAGTAATGTAATAGGTTGTAGATTGTAAATCCTATC
TCCCTAAGCAGCAGTGGAGAAGGTTGAAAATTACAAATCTTATCTCCCAAAGCAGTAGTAGACTA
GATCGAAGACAGCGATTCTTAACTTCCCAAGGTAGCAGGCAAGCAGATATAAGCCACTAGCCTTA
TCTCCCTAGTCAGTAGTGGAATAGGCTGAAGATTATAAGTCCTATCTCCCTAGTCAGCAGTGGAA
TAGGATGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTCAATCC
Found at i:12288105 original size:78 final size:78
Alignment explanation
Indices: 12287958--12288107 Score: 187
Period size: 78 Copynumber: 1.9 Consensus size: 78
12287948 CCACTAGCCT
* * *
12287958 TATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCAGGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTGAAGTCATATCTCCCAGGTCAGCAATGA
12288023 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * *
12288036 TATCTCCCTTGTCAGTTGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCTCTA-GTCAGTAAT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-TGAAGTCATATCTC-CCAGGTCAGCAAT
*
12288099 GTAATAGGT
64 GAAATAGGT
12288108 TGTAGATTGT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
78 56 0.92
79 5 0.08
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTGAAGTCATATCTCCCAGGTCAGCAATGA
AATAGGTGAATCC
Found at i:12288825 original size:78 final size:78
Alignment explanation
Indices: 12288696--12288845 Score: 205
Period size: 78 Copynumber: 1.9 Consensus size: 78
12288686 CCACTAGCCT
* * *
12288696 TATCTCCCTGGTCCGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTG-GTCAGCAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCC-GAGTAAGCAGTG
12288760 AAATAGGTGAATCC
65 AAATAGGTGAATCC
* * *
12288774 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCGAGTAAGCAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTAT-AAGTCATATCTCCCGAGTAAGCAGTG
*
12288838 TAATAGGT
65 AAATAGGT
12288846 TGAAGATTGT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 1 0.02
78 60 0.95
79 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCGAGTAAGCAGTGA
AATAGGTGAATCC
Found at i:12288858 original size:298 final size:298
Alignment explanation
Indices: 12288492--12289065 Score: 864
Period size: 298 Copynumber: 1.9 Consensus size: 298
12288482 CATGGTTAGC
* * * *
12288492 AGTGGAATAGGTTGAAGATTGCGAGTCCTATCTCCCTCACCAATAGTGAAATAGGTTTAAAATTG
1 AGTGGAATAGGTTGAAGATTACGAATCCTATCTCCCTCACCAACAGTGAAATAGGTTGAAAATTG
*
12288557 TGAATCCTAGCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAGAGATCCTATCTCCCAAAACA
66 TGAATCCTAGCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCAAAACA
* **
12288622 GTAGTGGAGCAGATCGAAGATGGTGAATCTTACCTTTCCAAGGTAGTAGGGAAGAATG-TTTAAG
131 GTAGTGGAGCAGATCGAAGACGACGAATCTTACCTTTCCAAGGTAGTAGGGAAGAA-GATTTAAG
* * *
12288686 CCACTAGCCTTATCTCCCTGGTCCGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGG
195 ACACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAG
12288751 TCAGCAGTGAAATAGGTGAATCCTATCTCTCTTGTCAGT
260 TCAGCAGTGAAATAGGTGAATCCTATCTCTCTTGTCAGT
* * ** * *
12288790 AGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC-GAGTAAGCAGTGTAATAGGTTGAAGATT
1 AGTGGAATAGGTTGAAGATTACGAATCCTATCTCCCTCACCAA-CAGTGAAATAGGTTGAAAATT
* * * * *
12288854 GTGAATCCTATCTCCCTGAGCAGCAGTGGAGTATGTTGAAAATTACAGATCTTATCTCCCTAAGC
65 GTGAATCCTAGCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCAAAAC
* * * *
12288919 AGTAGTGGAGCAGATCGAAGACGACGATTCTTATCTTTCCAAGGTAGTAGGGAAGCAGATTTCAG
130 AGTAGTGGAGCAGATCGAAGACGACGAATCTTACCTTTCCAAGGTAGTAGGGAAGAAGATTTAAG
*
12288984 ACACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAG
195 ACACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAG
*
12289049 TCAGCAGTGGAATAGGT
260 TCAGCAGTGAAATAGGT
12289066 TGAAGATTCT
Statistics
Matches: 246, Mismatches: 28, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
297 4 0.02
298 242 0.98
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (298 bp):
AGTGGAATAGGTTGAAGATTACGAATCCTATCTCCCTCACCAACAGTGAAATAGGTTGAAAATTG
TGAATCCTAGCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCAAAACA
GTAGTGGAGCAGATCGAAGACGACGAATCTTACCTTTCCAAGGTAGTAGGGAAGAAGATTTAAGA
CACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGT
CAGCAGTGAAATAGGTGAATCCTATCTCTCTTGTCAGT
Found at i:12289225 original size:44 final size:44
Alignment explanation
Indices: 12289158--12289247 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 44
12289148 NNNNNNNCCG
* *
12289158 ATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCT
1 ATCTCCCTGGTCAGGAATGGAATAGGTTGAAGATTGTGAATCCT
* *
12289202 ATCTCCCTGGTCAGGAATTGAATAGGTTGAAGATTGTGACTCCT
1 ATCTCCCTGGTCAGGAATGGAATAGGTTGAAGATTGTGAATCCT
12289246 AT
1 AT
12289248 GATCCTGAGC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (44 bp):
ATCTCCCTGGTCAGGAATGGAATAGGTTGAAGATTGTGAATCCT
Found at i:12289272 original size:44 final size:44
Alignment explanation
Indices: 12289161--12289276 Score: 119
Period size: 44 Copynumber: 2.6 Consensus size: 44
12289151 NNNNCCGATC
** * *
12289161 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATC
1 TCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAATCCTATA
** * *
12289205 TCCCTGGTCAGGAATTGAATAGGTTGAAGATTGTGACTCCTATGA
1 TCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAATCCTAT-A
*
12289250 T-CCTGAG-CAACAATGGAGTAGGTTGAA
1 TCCCTG-GTCAACAATGGAATAGGTTGAA
12289277 AATTATAGAT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
44 59 0.97
45 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (44 bp):
TCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAATCCTATA
Found at i:12289440 original size:44 final size:44
Alignment explanation
Indices: 12289376--12291581 Score: 672
Period size: 44 Copynumber: 51.7 Consensus size: 44
12289366 CCACTAGCCT
* *
12289376 TATCTCCTTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12289420 TATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12289464 TATCTCTCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
12289508 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12289552 TATCTCCCTGGTCAGCAATGAAATAGGTTGAA-AGTTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGA-TTGT-AAGTCC
* * * * * *
12289596 TATGTTCCTGAG-CAGCAGTGGAGTGGGTTGAAAATTAG-ACA-TCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATT-GTA-AGTCC
*** * ** * * * *
12289640 TATCTCTCAAAG-CAGTAGTGGAGCAGATTGAAGATGGCGAA-TCT
1 TATCTC-CCTGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * ****
12289684 TACCTTCCCAAT-GT-AGTAG-GGAAGAAGGTTTAAGCCACT-AG-CC
1 TATC-TCCC--TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
12289727 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12289772 TATCTCCCGGGTCAGCAGT-CAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12289806 TATCTCCCTTGTCTGTAGTGGAATAGGTTGAAGATTGTGTA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12289850 TATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-TCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12289894 TATCTCCCTGAG-CAGCAATGGAGTAGGTTGAACA-T-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * * * ** ** * *
12289938 TATCTCCCTAAGT-AGTAGTAGAACAGATCGAAGACGGCGATTCG
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * * * * ****
12289982 TATATTCCCAAG-CTGGTAG-GGAAGCAGATTTG-AGCCACT-AG-CC
1 TAT-CTCCCTGGTC-AGCAGTGGAA-TAG-GTTGAAGATTGTAAGTCC
* * * * * *
12290025 TTATCTCCTTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12290070 TATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTGTGAA-TCG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12290114 TATCTCCCTGGTCAACAGCGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
12290148 TATCTCCCTGGTCAGCAGTGGAATAGG-T---GA----AA--CC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12290182 TATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12290226 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGGTTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12290270 TATGTTCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TAGAGATCC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
**** * ** * * * *
12290314 TATCTCCCAAAACAGTAGTGGAGCAGATCGAAGATGGTGAA-TCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * * * * ****
12290358 TACCTTTCCAAGGT-AGTAG-GGAAGAATGTTTAAGCCACT-AG-CC
1 TA--TCTCCCTGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
12290401 TTATCTCCCTGGTCCGTAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12290446 TATCTCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12290480 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12290524 TATCTCCC-GAGTAAGCAGTGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12290568 TATCTCCCTGAG-CAGCAGTGGAGTATGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * ** * * ** **
12290612 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGA-TCC
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * ****
12290655 TTATCTTCCCAAT-GT-AGTAG-GGAAGAGGATTTAAGCCACT-AG-CC
1 -TATC-TCCC--TGGTCAGCAGTGGAATAGG-TTGAAGATTGTAAGTCC
* * * *
12290699 TTATCTCCCTGGTCAGTAGTGGAATAAGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12290744 TATCTCCCTGGTCTGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
12290778 TATCTCCCTTGTCAGTAGTGGAATAGGCTGAAGATTATGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12290822 TATCTCCCTGGCCAGCAGCGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * * * * *
12290866 TATCTCCCTAAGT-AGCAGTGGAGCAGATCGAAGA-TGGAGATTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTA-AGTCC
** * * * * *****
12290910 TATCTTTCCAAGGT-AGTA-CGGAAGCAGATAT-AAG-CCACCAG-CC
1 TATC--TCCCTGGTCAGCAGTGGAA-TAGGT-TGAAGATTGTAAGTCC
* * *
12290953 TTATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTCG
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * ** * *
12290998 AATCTCCCCGGTCAGCAGTAAAATAGGTTGACGATTGTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12291042 TATCTGCCTGGTCAACAGTGGAATAGGTTGAAGATTGTATGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
12291086 AATCTCCTTGGTCTGCAGTGGAATAGG-TG-A-A---T---T-C
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
12291120 TATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
12291164 TATCTCCCTGAG-CAGCAGTGGAGTAGATTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * ** ** * ** * *
12291208 TATCTCCCAAAG-CAGTAGTGGAGCACATCGAAGACGGCGAA-TCT
1 TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * * ****
12291252 TATCTTCCCAAGAT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
12291295 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTTC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12291340 TATCTCCCTAGTCAGCAGTGGAATAGGTTGACGATTGTGAGCCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
12291384 TATCTCCCTAGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* **
12291428 AATCTCATTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
12291462 TATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
12291506 TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
** *
12291550 TATCTCCCTGACCAGCAGTGGAGTAGGTTGAA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAA
12291582 AATTATAGAT
Statistics
Matches: 1605, Mismatches: 382, Indels: 350
0.69 0.16 0.15
Matches are distributed among these distances:
34 154 0.10
35 22 0.01
36 13 0.01
37 7 0.00
38 6 0.00
39 6 0.00
40 4 0.00
41 13 0.01
42 43 0.03
43 118 0.07
44 1087 0.68
45 116 0.07
46 13 0.01
47 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:12289857 original size:78 final size:78
Alignment explanation
Indices: 12289728--12289877 Score: 214
Period size: 78 Copynumber: 1.9 Consensus size: 78
12289718 CCACTAGCCT
12289728 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGCAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGCAGTCA
12289793 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * *
12289806 TATCTCCCTTGTCTGTAGTGGAATAGGTTGAAGATTGTGT-A-TCCTATCTCCCTGGTCAGCAGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-T-TAAGTCATATCTCCCGGGTCAGCAGT
**
12289869 GTAATAGGT
64 CAAATAGGT
12289878 TGAAGATTGT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
78 61 0.95
79 2 0.03
80 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.33
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGCAGTCA
AATAGGTGAATCC
Found at i:12290097 original size:298 final size:298
Alignment explanation
Indices: 12289505--12290077 Score: 799
Period size: 298 Copynumber: 1.9 Consensus size: 298
12289495 AGATTCTAAG
12289505 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAA
1 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAA
* * * * *
12289570 TGAAATAGGTTGAAAGTTGTGAATCCTATGTTCCTGAGCAGCAGTGGAGTGGGTTGAAAATTAGA
66 TGAAATAGGTTGAAAGTTGTGAATCCTATCTCCCTGAGCAGCAATGGAGTAGGTTGAAAATTACA
* * * * * * *
12289635 CATCTTATCTCTCAAAGCAGTAGTGGAGCAGATTGAAGATGGCGAATCTTACCTTCCCAATGTAG
131 CATCTTATCTCCCAAAGCAGTAGTAGAACAGATCGAAGACGGCGAATCGTACATTCCCAATGTAG
* * * *
12289700 TAGGGAAGAAGGTTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTT
196 TAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGATTA
12289765 TAAGTCATATCTCCCGGGTCAGCAGTCAAATAGGTGAA
261 TAAGTCATATCTCCCGGGTCAGCAGTCAAATAGGTGAA
* * * * *
12289803 TCCTATCTCCCTTGTCTGTAGTGGAATAGGTTGAAGATTGTGTATCCTATCTCCCTGGTCAGCAG
1 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAA
* * *
12289868 TGTAATAGGTTG-AAGATTGTGAATCTTATCTCCCTGAGCAGCAATGGAGTAGGTTGAACATTAC
66 TGAAATAGGTTGAAAG-TTGTGAATCCTATCTCCCTGAGCAGCAATGGAGTAGGTTGAAAATTAC
* * * * *
12289932 AGATCTTATCTCCCTAAGTAGTAGTAGAACAGATCGAAGACGGCGATTCGTATATTCCCAA-GCT
130 ACATCTTATCTCCCAAAGCAGTAGTAGAACAGATCGAAGACGGCGAATCGTACATTCCCAATG-T
* * * * *
12289996 GGTAGGGAAGCAGATTTGAGCCACTAGCCTTATCTCCTTGGTCAGTAATGGAACAGGTTGAAGGT
194 AGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGAT
*
12290061 TATAAGTCCTATCTCCC
259 TATAAGTCATATCTCCC
12290078 TGGTTAGTAG
Statistics
Matches: 238, Mismatches: 35, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
297 4 0.02
298 234 0.98
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (298 bp):
TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAA
TGAAATAGGTTGAAAGTTGTGAATCCTATCTCCCTGAGCAGCAATGGAGTAGGTTGAAAATTACA
CATCTTATCTCCCAAAGCAGTAGTAGAACAGATCGAAGACGGCGAATCGTACATTCCCAATGTAG
TAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGATTA
TAAGTCATATCTCCCGGGTCAGCAGTCAAATAGGTGAA
Found at i:12290150 original size:298 final size:288
Alignment explanation
Indices: 12289544--12290179 Score: 675
Period size: 298 Copynumber: 2.1 Consensus size: 288
12289534 GTTGAAGATT
* * *
12289544 GTGAATCCTATCTCCCTGGTCAGCAATGAAATAGGTTGAAAGTTGTGAATCCTATGTTCCTGAGC
1 GTGAATCCTATCTCCCTGGTCAGCAGTGAAATAGGTTGAAAGTTGTGAATCCTATCTCCCTGAGC
* * * * * * *
12289609 AGCAGTGGAGTGGGTTGAAAATTAGACATCTTATCTCTCAAAGCAGTAGTGGAGCAGATTGAAGA
66 AGCAATGGAGTAGGTTGAAAATTACACATCTTATCTCCCAAAGCAGTAGTAGAACAGATCGAAGA
* * * *
12289674 TGGCGAATCTTACCTTCCCAATGTAGTAGGGAAGAAGGTTTAAGCCACTAGCCTTATCTCCCTGG
131 CGGCGAATCGTACATTCCCAATGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
* * *
12289739 TCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGCAGTCAAATAGGTGAAT
196 TCAGTAATGGAACAGGTTGAAGATTATAAGTCATATCTCCCGGGTCAGCAGTCAAATAGGTGAAT
* *** *
12289804 CCTATCTCCCTTGTCTGTAGTGGAATAG
261 CCTATCTCCCTGGTCAACAGCGGAATAG
* *
12289832 GTTGAAGATTGTGTATCCTATCTCCCTGGTCAGCAGTGTAATAGGTTG-AAGATTGTGAATCTTA
1 G-T---GA------ATCCTATCTCCCTGGTCAGCAGTGAAATAGGTTGAAAG-TTGTGAATCCTA
* * * *
12289896 TCTCCCTGAGCAGCAATGGAGTAGGTTGAACATTACAGATCTTATCTCCCTAAGTAGTAGTAGAA
55 TCTCCCTGAGCAGCAATGGAGTAGGTTGAAAATTACACATCTTATCTCCCAAAGCAGTAGTAGAA
* * * * *
12289961 CAGATCGAAGACGGCGATTCGTATATTCCCAA-GCTGGTAGGGAAGCAGATTTGAGCCACTAGCC
120 CAGATCGAAGACGGCGAATCGTACATTCCCAATG-TAGTAGGGAAGAAGATTTAAGCCACTAGCC
* * * * * *
12290025 TTATCTCCTTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTTAGTAGTG
184 TTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGATTATAAGTCATATCTCCCGGGTCAGCAGT-
* *
12290090 GAATAGGTTGAAGATTGTGAATCGTATCTCCCTGGTCAACAGCGGAATAG
248 CAA-A---T--AG---GTGAATCCTATCTCCCTGGTCAACAGCGGAATAG
*
12290140 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGG-TGAAA
1 GTGAATCCTATCTCCCTGGTCAGCAGTGAAATAGGTTGAAA
12290180 CCTATCTCCC
Statistics
Matches: 283, Mismatches: 42, Indels: 36
0.78 0.12 0.10
Matches are distributed among these distances:
288 1 0.00
289 1 0.00
292 2 0.01
297 6 0.02
298 235 0.83
299 2 0.01
300 1 0.00
303 1 0.00
304 2 0.01
305 2 0.01
307 1 0.00
308 29 0.10
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (288 bp):
GTGAATCCTATCTCCCTGGTCAGCAGTGAAATAGGTTGAAAGTTGTGAATCCTATCTCCCTGAGC
AGCAATGGAGTAGGTTGAAAATTACACATCTTATCTCCCAAAGCAGTAGTAGAACAGATCGAAGA
CGGCGAATCGTACATTCCCAATGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
TCAGTAATGGAACAGGTTGAAGATTATAAGTCATATCTCCCGGGTCAGCAGTCAAATAGGTGAAT
CCTATCTCCCTGGTCAACAGCGGAATAG
Found at i:12290152 original size:34 final size:34
Alignment explanation
Indices: 12290106--12290209 Score: 163
Period size: 34 Copynumber: 3.1 Consensus size: 34
12290096 GTTGAAGATT
* * *
12290106 GTGAATCGTATCTCCCTGGTCAACAGCGGAATAG
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAG
12290140 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAG
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAG
* *
12290174 GTGAAACCTATCTCCCTGGTTAGCAGTGGAATAG
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAG
12290208 GT
1 GT
12290210 TGAAGATTGT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 65 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (34 bp):
GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAG
Found at i:12290515 original size:298 final size:299
Alignment explanation
Indices: 12290148--12291455 Score: 1359
Period size: 298 Copynumber: 4.4 Consensus size: 299
12290138 AGGTGAATCC
* * *
12290148 TATCTCCCTGGTCAGCAGTGGAATAGGTGAAACCTATCTCCCTGGTTAGCAGTGGAATAGGTTGA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTTGTCAGCAGTGGAATAGGTTGA
* * * * *
12290213 AGATTGTGAGTCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGGTTGTGAATCCTATGTTCC
66 AGATTATGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* * * *
12290278 TGAGCAGCAGTGGAGTAGGTTGAAAATTAGAGATCCTATCTCCCAAAACAGTAGTGGAGCAGATC
131 TGAGCAGCAGTGGAGTAGATTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATC
* * * * *
12290343 GAAGATGGTGAATCTTACCTTTCCAAGGTAGTAGGGAAGAATG-TTTAAGCCACTAGCCTTATCT
196 GAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGGATTTAAGCCACTAGCCTTATCT
*
12290407 CCCTGGTCCGTAGTGGAATAGGTTGAAGATTGTAAGTCA
261 CCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
* * *
12290446 TATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTATCTCTCTTGTCAGTAGTGGAATAGGTTGA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTTGTCAGCAGTGGAATAGGTTGA
* * *
12290511 AGATTATGAATCCTATCTCCC-GAGTAAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCC
66 AGATTATGAGTCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
* *
12290575 CTGAGCAGCAGTGGAGTATG-TTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGA
130 CTGAGCAGCAGTGGAGTA-GATTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGA
*
12290639 TCGAAGACGGCG-ATCCTTATCTTCCCAATGTAGTAGGGAAG-AGGATTTAAGCCACTAGCCTTA
194 TCGAAGACGGCGAAT-CTTATCTTCCCAAGGTAGTAGGGAAGAAGGATTTAAGCCACTAGCCTTA
* *
12290702 TCTCCCTGGTCAGTAGTGGAATAAGTTGAAGATTTTAAGTCA
258 TCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
* * * *
12290744 TATCTCCCTGGTCTGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGCTGA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTTGTCAGCAGTGGAATAGGTTGA
* * *
12290809 AGATTATGAGTCCTATCTCCCTGGCCAGCAGCGTAATAGGTTGAAGATTGTGAATCCTATCTCCC
66 AGATTATGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* * * * * ** * * * *
12290874 TAAGTAGCAGTGGAGCAGATCGAAGA-TGGAGATTCTTATCTTTCCAAGGTAGTACG-GAAGCAG
131 TGAGCAGCAGTGGAGTAGATTGAAAATTACAGA-TCTTATC-TCCCAAAGCAGTA-GTGGAGCAG
** ** * ** * * * * **** *
12290937 ATATAAG-CCACCAGCCTTATC-TCCC-TGGTCAGTAGTGGAA-TAGG-CTGAAGATTGTAAGTC
193 ATCGAAGACGGCGAATCTTATCTTCCCAAGGT-AGTAG-GGAAGAAGGATTTAAGCCACT-AGCC
** * * ** * * *
12290997 GAATCTCCCCGGTCAGCAGTAAAATAGGTTGACGATTGTGAGTCC
255 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
* * ** *
12291042 TATCTGCCTGGTCAACAGTGGAATAGGTTGAAGATTGTATGTCCAATCTCCTTGGTCTGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGG-TG-A-ATCCTA--T-C--TC-CCTT-GTCAGCAGTGG
* *
12291107 AATAGG-T---GA--AT---T-CTATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAAT
56 AATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
12291162 CCTATCTCCCTGAGCAGCAGTGGAGTAGATTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGT
121 CCTATCTCCCTGAGCAGCAGTGGAGTAGATTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGT
* *
12291227 GGAGCACATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTAGGGAAGAA-GATTTAAGCCACT
186 GGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGGATTTAAGCCACT
12291291 AGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTTC-
251 AGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCA
* * * *
12291340 TATCTCCCTAGTCAGCAGTGGAATAGGTTGACGATTGTGAGCCCTATCTCCCTAGTTAACAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGG-TGA--A---T----CCTATCTCCCTTGTCAGCAGTGG
* * ** **
12291405 AATAGGTTGAAGATTGTAAGTCAAATCTCATTGGTCAGCAGTGGAATAGGT
56 AATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGT
12291456 GAATCCTATC
Statistics
Matches: 819, Mismatches: 141, Indels: 90
0.78 0.13 0.09
Matches are distributed among these distances:
296 3 0.00
297 45 0.05
298 652 0.80
299 49 0.06
300 6 0.01
301 5 0.01
302 5 0.01
303 2 0.00
304 4 0.00
305 2 0.00
306 2 0.00
307 6 0.01
308 38 0.05
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (299 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTTGTCAGCAGTGGAATAGGTTGA
AGATTATGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
TGAGCAGCAGTGGAGTAGATTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATC
GAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGGATTTAAGCCACTAGCCTTATCT
CCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
Found at i:12290531 original size:78 final size:78
Alignment explanation
Indices: 12290402--12290551 Score: 205
Period size: 78 Copynumber: 1.9 Consensus size: 78
12290392 CCACTAGCCT
* * *
12290402 TATCTCCCTGGTCCGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTG-GTCAGCAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCC-GAGTAAGCAGTG
12290466 AAATAGGTGAATCC
65 AAATAGGTGAATCC
* * *
12290480 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCGAGTAAGCAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTAT-AAGTCATATCTCCCGAGTAAGCAGTG
*
12290544 TAATAGGT
65 AAATAGGT
12290552 TGAAGATTGT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 1 0.02
78 60 0.95
79 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCGAGTAAGCAGTGA
AATAGGTGAATCC
Found at i:12290777 original size:254 final size:254
Alignment explanation
Indices: 12290517--12291025 Score: 657
Period size: 254 Copynumber: 2.0 Consensus size: 254
12290507 TTGAAGATTA
* * *
12290517 TGAATCCTATCTCCCGAGTAAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-C
1 TGAATCCTATCTCCCGAGTAAGCAGTGGAATAGGCTGAAGATTATGAATCCTATCTCCCTG-GCC
* * * * *
12290581 AGCAGTGGAGTATGTTGAAAATTACAG-ATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAG
65 AGCAGCGGAATAGGTTGAAAATT-CAGAATCCTATCTCCCTAAGCAGCAGTAGAGCAGATCGAAG
* * * * *
12290645 ACGGCGATCCTTATCTTCCCAATGTAGTAGGGAAG-AGGATTTAAGCCACTAGCCTTATCTCCCT
129 ACGGAGATCCTTATCTTCCCAAGGTAGTACGGAAGCA-GATATAAGCCACCAGCCTTATCTCCCT
* * * * *
12290709 GGTCAGTAGTGGAATAAGTTGAAGATTTTAAGTC-ATATCTCCCTGGTCTGCAGTGAAATAGG
193 GGTCAGTAGTGGAATAAGCTGAAGATTGTAAGTCGA-ATCTCCCCGGTCAGCAGTAAAATAGG
** * * *
12290771 TGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGCTGAAGATTATGAGTCCTATCTCCCTGGCCA
1 TGAATCCTATCTCCCGAGTAAGCAGTGGAATAGGCTGAAGATTATGAATCCTATCTCCCTGGCCA
* * ** * * *
12290836 GCAGCGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGTAGCAGTGGAGCAGATCGAAGAT
66 GCAGCGGAATAGGTTGAAAATTCAGAATCCTATCTCCCTAAGCAGCAGTAGAGCAGATCGAAGAC
* *
12290901 GGAGATTCTTATCTTTCCAAGGTAGTACGGAAGCAGATATAAGCCACCAGCCTTATCTCCCTGGT
131 GGAGATCCTTATCTTCCCAAGGTAGTACGGAAGCAGATATAAGCCACCAGCCTTATCTCCCTGGT
*
12290966 CAGTAGTGGAATAGGCTGAAGATTGTAAGTCGAATCTCCCCGGTCAGCAGTAAAATAGG
196 CAGTAGTGGAATAAGCTGAAGATTGTAAGTCGAATCTCCCCGGTCAGCAGTAAAATAGG
12291025 T
1 T
12291026 TGACGATTGT
Statistics
Matches: 218, Mismatches: 33, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
253 2 0.01
254 214 0.98
255 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (254 bp):
TGAATCCTATCTCCCGAGTAAGCAGTGGAATAGGCTGAAGATTATGAATCCTATCTCCCTGGCCA
GCAGCGGAATAGGTTGAAAATTCAGAATCCTATCTCCCTAAGCAGCAGTAGAGCAGATCGAAGAC
GGAGATCCTTATCTTCCCAAGGTAGTACGGAAGCAGATATAAGCCACCAGCCTTATCTCCCTGGT
CAGTAGTGGAATAAGCTGAAGATTGTAAGTCGAATCTCCCCGGTCAGCAGTAAAATAGG
Found at i:12290803 original size:34 final size:35
Alignment explanation
Indices: 12290744--12290809 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 35
12290734 TTTTAAGTCA
*
12290744 TATCTCCCTGGTCTGCAGTGAAATAGG-TGAATCC
1 TATCTCCCTGGTCAGCAGTGAAATAGGCTGAATCC
* * *
12290778 TATCTCCCTTGTCAGTAGTGGAATAGGCTGAA
1 TATCTCCCTGGTCAGCAGTGAAATAGGCTGAA
12290810 GATTATGAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
34 23 0.85
35 4 0.15
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (35 bp):
TATCTCCCTGGTCAGCAGTGAAATAGGCTGAATCC
Found at i:12290847 original size:78 final size:78
Alignment explanation
Indices: 12290700--12290849 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 78
12290690 CCACTAGCCT
* * * * *
12290700 TATCTCCCTGGTCAGTAGTGGAATAAGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAAGCTGAAGATTATAAGTCATATCTCCCTGGCCAGCAGCGA
12290765 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * *
12290778 TATCTCCCTTGTCAGTAGTGGAATAGGCTGAAGATTATGAGTCCTATCTCCCTGGCCAGCAGCGT
1 TATCTCCCTGGTCAGTAGTGGAATAAGCTGAAGATTATAAGTCATATCTCCCTGGCCAGCAGCGA
12290843 AATAGGT
66 AATAGGT
12290850 TGAAGATTGT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 62 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAAGCTGAAGATTATAAGTCATATCTCCCTGGCCAGCAGCGA
AATAGGTGAATCC
Found at i:12291074 original size:342 final size:339
Alignment explanation
Indices: 12290695--12291572 Score: 1175
Period size: 342 Copynumber: 2.6 Consensus size: 339
12290685 TTAAGCCACT
* ** * * *
12290695 AGCCTTATCTCCCTGGTCAGTAGTGGAATAAGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGC
1 AGCCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCA-ATCTCCTTGGTCTGC
* * * * * * *
12290760 AGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGCTGAAGATTATGAGTCCTAT
65 AGTGGAATAGGTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAT
* *
12290825 CTCCCTGGCCAGCAGCGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGTAGCAGTGGAGC
130 CTCCCTGG-CAGCAGAG-AATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAGC
* * * * * *
12290890 AGATCGAAGATGGAGATTCTTATCTTTCCAAGGTAGTACGGAAGCAGATATAAGCCACCAGCCTT
193 ACATCGAAGACGGAGAATCTTATCTTCCCAAGATAGTACGGAAGAAGATATAAGCCACCAGCCTT
*
12290955 ATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAG-TCGAATCTCCCCGGTCAGCAGTAA
258 ATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTTC-AATCTCCCCAGTCAGCAGTAA
12291019 AATAGGTTGACGATTGTG
322 AATAGGTTGACGATTGTG
* * *
12291037 AGTCCTATCTGCCTGGTCAACAGTGGAATAGGTTGAAGATTGTATGTCCAATCTCCTTGGTCTGC
1 AGCCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGT-CAATCTCCTTGGTCTGC
* *
12291102 AGTGGAATAGGTGAATTCTATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAT
65 AGTGGAATAGGTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAT
* * * * ** * * *
12291167 CTCCCTGAGCAGCAGTGGAGTAGATTGAAAATT-ACAGATCTTATCTCCCAAAGCAGTAGTGGAG
130 CTCCCTG-GCAGCAG-AGAATAGGTTGAAGATTGTGA-ATCCTATCTCCCTAAGCAGCAGTGGAG
* * * *
12291231 CACATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTAGGGAAGAAGATTTAAGCCACTAGCCT
192 CACATCGAAGACGGAGAATCTTATCTTCCCAAGATAGTACGGAAGAAGATATAAGCCACCAGCCT
* * * **
12291296 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTTCTATCTCCCTAGTCAGCAGTGG
257 TATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTTCAATCTCCCCAGTCAGCAGTAA
12291361 AATAGGTTGACGATTGTG
322 AATAGGTTGACGATTGTG
* * * *
12291379 AGCCCTATCTCCCTAGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCATTGGTCAGC
1 AGCCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTC-AATCTCCTTGGTCTGC
12291444 AGTGGAATAGGTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAT
65 AGTGGAATAGGTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAT
* * *
12291509 CTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAG
130 CTCCCTGG-CAGC-AGAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAG
12291573 TAGGTTGAAA
Statistics
Matches: 462, Mismatches: 65, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
341 3 0.01
342 451 0.98
343 8 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (339 bp):
AGCCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCAATCTCCTTGGTCTGCA
GTGGAATAGGTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATC
TCCCTGGCAGCAGAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAGCACA
TCGAAGACGGAGAATCTTATCTTCCCAAGATAGTACGGAAGAAGATATAAGCCACCAGCCTTATC
TCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTTCAATCTCCCCAGTCAGCAGTAAAATA
GGTTGACGATTGTG
Found at i:12291141 original size:254 final size:250
Alignment explanation
Indices: 12290517--12291113 Score: 585
Period size: 254 Copynumber: 2.3 Consensus size: 250
12290507 TTGAAGATTA
* * * * *
12290517 TGAATCCTATCTCCC-GAGT-AAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG
1 TGAATCCTATCTCCCTG-GTCAA-CAGTGGAATAGGCTGAAGATTATGAGTCCAATCTCCCTG-G
* * * * * * * *
12290580 -CAGCAGTGGAGTATGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAA
63 CCAGCAGCGGAATAGGTTGAAGATT----ATCCTATCTCCCTAAGTAGCAGTGGAGCAGATCGAA
* * * * *
12290644 GACGGCGATCCTTATCTTCCCAATGTAGTAGGGAAGAGGATTTAAGCCACTAGCCTTATCTCCCT
124 GACGGAGATCCTTATCTTCCCAAGGTAGTACGGAAGAGGATATAAGCCACCAGCCTTATCTCCCT
* * * * *
12290709 GGTCAGTAGTGGAATAAGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGAAATAGG
189 GGTCAGTAGTGGAATAAGCTGAAGATTGTAAGTCATATCTCCCCGGTCAGCAGTAAAATAGG
* ** *
12290771 TGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGCTGAAGATTATGAGTCCTATCTCCCTGGCCA
1 TGAATCCTATCTCCCTGGTCAACAGTGGAATAGGCTGAAGATTATGAGTCCAATCTCCCTGGCCA
* *
12290836 GCAGCGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGTAGCAGTGGAGCAGATCGAAGAT
66 GCAGCGGAATAGGTTGAAGA-T-T--ATCCTATCTCCCTAAGTAGCAGTGGAGCAGATCGAAGAC
* *
12290901 GGAGATTCTTATCTTTCCAAGGTAGTACGGAAGCA-GATATAAGCCACCAGCCTTATCTCCCTGG
127 GGAGATCCTTATCTTCCCAAGGTAGTACGGAAG-AGGATATAAGCCACCAGCCTTATCTCCCTGG
*
12290965 TCAGTAGTGGAATAGGCTGAAGATTGTAAGTCGA-ATCTCCCCGGTCAGCAGTAAAATAGG
191 TCAGTAGTGGAATAAGCTGAAGATTGTAAGTC-ATATCTCCCCGGTCAGCAGTAAAATAGG
* * *
12291025 TTGACGATTGTGAGTCCTATCTGCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-ATGTCCAAT
1 -T---GA-----A-TCCTATCTCCCTGGTCAACAGTGGAATAGGCTGAAGATTATGA-GTCCAAT
* * * *
12291089 CTCCTTGGTCTGCAGTGGAATAGGT
55 CTCCCTGGCCAGCAGCGGAATAGGT
12291114 GAATTCTATC
Statistics
Matches: 281, Mismatches: 44, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
253 1 0.00
254 209 0.74
255 5 0.02
256 1 0.00
258 2 0.01
263 2 0.01
264 61 0.22
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (250 bp):
TGAATCCTATCTCCCTGGTCAACAGTGGAATAGGCTGAAGATTATGAGTCCAATCTCCCTGGCCA
GCAGCGGAATAGGTTGAAGATTATCCTATCTCCCTAAGTAGCAGTGGAGCAGATCGAAGACGGAG
ATCCTTATCTTCCCAAGGTAGTACGGAAGAGGATATAAGCCACCAGCCTTATCTCCCTGGTCAGT
AGTGGAATAAGCTGAAGATTGTAAGTCATATCTCCCCGGTCAGCAGTAAAATAGG
Found at i:12291511 original size:78 final size:78
Alignment explanation
Indices: 12291382--12291533 Score: 216
Period size: 78 Copynumber: 1.9 Consensus size: 78
12291372 GATTGTGAGC
* *
12291382 CCTATCTCCCTAGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCATTGGTCAGCAGT
1 CCTATCTCCCTAGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCACTGGTCAGCAAT
*
12291447 GGAATAGGTGAAT
66 AGAATAGGTGAAT
* * ** *
12291460 CCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAA
1 CCTATCTCCCTAGTTAACAGTGGAATAGGTTGAAGATTGT-AAGTCAAATCTCACTGGTCAGCAA
12291524 TAGAATAGGT
65 TAGAATAGGT
12291534 TGAAGATTGT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
78 63 0.97
79 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (78 bp):
CCTATCTCCCTAGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCACTGGTCAGCAAT
AGAATAGGTGAAT
Found at i:12291566 original size:122 final size:122
Alignment explanation
Indices: 12291339--12291577 Score: 309
Period size: 122 Copynumber: 2.0 Consensus size: 122
12291329 ATTGTAAGTT
* * * * *
12291339 CTATCTCCCTAGTCAGCAGTGGAATAGGTTGACGATTGTGAGCCCTATCTCCCTAGTTAACAGTG
1 CTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAACCCTATCTCCCTAGTCAACAATA
* **
12291404 GAATAGGTTGAAGATTGTAAGTCAAATCTCATTGGTCAGCAGTGGAATAGGTGAATC
66 GAATAGGTTGAAGATTGTAAGTCAAATCTCACTGACCAGCAGTGGAATAGGTGAATC
* * * * *
12291461 CTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATA
1 CTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAACCCTATCTCCCTAGTCAACAATA
** * *
12291526 GAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGACCAGCAGTGGAGTAGGT
66 GAATAGGTTGAAGATTGT-AAGTCAAATCTCACTGACCAGCAGTGGAATAGGT
12291578 TGAAAATTAT
Statistics
Matches: 99, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
122 97 0.98
123 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (122 bp):
CTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAACCCTATCTCCCTAGTCAACAATA
GAATAGGTTGAAGATTGTAAGTCAAATCTCACTGACCAGCAGTGGAATAGGTGAATC
Found at i:12292531 original size:44 final size:44
Alignment explanation
Indices: 12292490--12292724 Score: 217
Period size: 44 Copynumber: 5.6 Consensus size: 44
12292480 CCTTATCTTT
* *
12292490 CTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCC
1 CTGGTCAGCAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCC
* * *
12292534 CTAGTCAGCAGTGGAATAGGGTT-AAGATTCTGAGTTCTATCTCC
1 CTGGTCAGCAGTGGAATA-GGTTGAAGATTCTAAGTCCTATCTCC
* *
12292578 CTGGTCAACACTGGAATAGGTTGAAGATTCTAAGTCCTATCTCC
1 CTGGTCAGCAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCC
* ** *
12292622 CCGGTCAGCAGTTAAATAGG-T---GA--C--A--CCTATCTCT
1 CTGGTCAGCAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCC
* *
12292656 CTGGTCAGCAGTGAAATAGGTTGAAGATTGTGAA-TCCTATCTCC
1 CTGGTCAGCAGTGGAATAGGTTGAAGATTCT-AAGTCCTATCTCC
* *
12292700 CTGAG-CAGCAGTGGAGTAGATTGAA
1 CTG-GTCAGCAGTGGAATAGGTTGAA
12292725 AATTACAGAT
Statistics
Matches: 155, Mismatches: 23, Indels: 26
0.76 0.11 0.13
Matches are distributed among these distances:
34 26 0.17
35 1 0.01
36 1 0.01
38 3 0.02
40 2 0.01
43 6 0.04
44 111 0.72
45 5 0.03
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (44 bp):
CTGGTCAGCAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCC
Found at i:12292575 original size:88 final size:78
Alignment explanation
Indices: 12292570--12292714 Score: 177
Period size: 78 Copynumber: 1.9 Consensus size: 78
12292560 ATTCTGAGTT
* * * * ** *
12292570 CTATCTCCCTGGTCAACACTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCCGGTCAGCAGTT
1 CTATCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTG
*
12292635 AAATAGGTGACAC
66 GAATAGGTGACAC
*
12292648 CTATCTCTCTGGTCAGCAGTGAAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAG-CAGCAG
1 CTATCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCT-AGTCAGCAG
12292711 TGGA
64 TGGA
12292715 GTAGATTGAA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
78 53 0.95
79 3 0.05
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (78 bp):
CTATCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTG
GAATAGGTGACAC
Found at i:12294035 original size:44 final size:44
Alignment explanation
Indices: 12293972--12294507 Score: 231
Period size: 44 Copynumber: 12.9 Consensus size: 44
12293962 NNNNNNNNNN
12293972 AAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAG
1 AAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAG
12294016 AAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCA-
1 AAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAG
*
12294059 ACAGCGG---A--TT--AG---GTGAATCCTATCTCCCTGGTCA-
1 A-AGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAG
* * * *
12294093 ACAGTGGAATAAGTTAAAGATTCTGAATACTATCTCCCTGAG-CAG
1 A-AGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG-GTCAG
* * * * *
12294138 CAGTGGAGA-AGGTTGAAAATTACTG-ATCTTATCTCCCTAAG-CAG
1 AAGTGGA-ATAGGTTGAAGATT-GTGAATCCTATCTCCCT-GGTCAG
* * ** * * ** * * * *
12294182 TAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGT-AG
1 AAGTGGAATAGGTTGAAGATTGTGAATCCTATC-TCCC-TGGTCAG
* * * * **** *
12294227 TAG-GGAAGAAGATTTAAGCCACT--AGCCTTATCTCCCTGGTCAG
1 AAGTGGAA-TAGGTTGAAGATTGTGAATCC-TATCTCCCTGGTCAG
* * * *
12294270 TAGTGGAATAGGTTGAAGATT-TTAAGTCCTACCTCCCTAGTCAG
1 AAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAG
* * * * *
12294314 CAGTGGAATAGGTTGAAGATTCTGAGTTCTATCTCCTTGGTCA-
1 AAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAG
*
12294357 ACAGTGGAATAGGTTGAAGATTCT-AAGTCCTATCTCCCTGGTCAG
1 A-AGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAG
* *
12294402 CAGT-GAA-A---T--AG---GTGAAACCTATCTCCCTGGTCAG
1 AAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAG
* *
12294436 CAGT-GAA-A---T--AG---GTGAAACCTATCTCCCTGGTCAG
1 AAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAG
* *
12294470 CAGTGAAATAGGTTGAAGATTGTGAATCCTATCTCCCT
1 AAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCT
12294508 NNNNNNNNNN
Statistics
Matches: 387, Mismatches: 62, Indels: 86
0.72 0.12 0.16
Matches are distributed among these distances:
34 84 0.22
35 4 0.01
36 1 0.00
37 5 0.01
39 6 0.02
41 5 0.01
42 5 0.01
43 23 0.06
44 227 0.59
45 27 0.07
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (44 bp):
AAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAG
Found at i:12294428 original size:34 final size:34
Alignment explanation
Indices: 12294385--12294482 Score: 196
Period size: 34 Copynumber: 2.9 Consensus size: 34
12294375 GATTCTAAGT
12294385 CCTATCTCCCTGGTCAGCAGTGAAATAGGTGAAA
1 CCTATCTCCCTGGTCAGCAGTGAAATAGGTGAAA
12294419 CCTATCTCCCTGGTCAGCAGTGAAATAGGTGAAA
1 CCTATCTCCCTGGTCAGCAGTGAAATAGGTGAAA
12294453 CCTATCTCCCTGGTCAGCAGTGAAATAGGT
1 CCTATCTCCCTGGTCAGCAGTGAAATAGGT
12294483 TGAAGATTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 64 1.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (34 bp):
CCTATCTCCCTGGTCAGCAGTGAAATAGGTGAAA
Found at i:12294622 original size:44 final size:44
Alignment explanation
Indices: 12294559--12295207 Score: 288
Period size: 44 Copynumber: 15.2 Consensus size: 44
12294549 CACTAGCCTT
* * *
12294559 ATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTCGA
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCA
* * *
12294603 ATCT-CCTCGGTCAGCAGTGGAATAAGTTGACGATTGTAAGTCCT
1 ATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCA
* *
12294647 ATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTATGTCCA
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCA
* * * * *
12294691 AACTCCTTGGTCTGCAGTGCAATAGG-TG-A-A---T---T-CT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCA
* * *
12294725 ATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCA
* * *
12294769 ATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCA
* * ** **
12294813 ATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTACATA-TCTT
1 ATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AGTCCA
** * * * * ** * **
12294857 ATCTCCCAAAG-CAGTAGTAGCG-CT-GATCGAAGACGGCGAA-TCTT
1 ATCTCCC-TGGTCAGCAGT-G-GAATAGGTTGAAGATTG-TAAGTCCA
* * * * * * **** *
12294901 ATCTTCCCAAGAT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CCTT
1 ATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC-A
* * * * *
12294945 ATCTCCCTGGTCAGTAGTTGAATAGGTTGAAAATTGTAAGTTCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCA
* * * * * *
12294989 ATCTCCCTAGTCAGTAGTGGAGTAGGTTGACGATTGTGAGTCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCA
* * * *
12295033 ATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTATGTCAA
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCA
** *
12295077 ATCTCGTTGGTCAGCAGTGGAATA----G--G--TG-AA-TCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCA
* *
12295111 ATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCA
* * *
12295155 ATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCA
12295199 ATCTCCCTG
1 ATCTCCCTG
12295208 ACNNNNNNNN
Statistics
Matches: 468, Mismatches: 98, Indels: 78
0.73 0.15 0.12
Matches are distributed among these distances:
34 44 0.09
35 4 0.01
36 3 0.01
37 1 0.00
38 3 0.01
40 3 0.01
41 1 0.00
42 6 0.01
43 26 0.06
44 350 0.75
45 26 0.06
46 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (44 bp):
ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCA
Found at i:12294793 original size:78 final size:78
Alignment explanation
Indices: 12294645--12294795 Score: 189
Period size: 78 Copynumber: 1.9 Consensus size: 78
12294635 ATTGTAAGTC
* * * * *
12294645 CTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTATGTCCAAACTCCTTGGTCTGCAGTG
1 CTATCTCCCAGGTCAACAGTGGAATAGGTTGAAGATTGTATATCCAAACTCCCTGGTCAGCAATG
12294710 CAATAGGTGAATT
66 CAATAGGTGAATT
* * * *
12294723 CTATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGA-ATCCTATCTCCCTGGTCAGCAAT
1 CTATCTCCCAGGTCAACAGTGGAATAGGTTGAAGATTGT-ATATCCAAACTCCCTGGTCAGCAAT
12294787 AG-AATAGGT
65 -GCAATAGGT
12294796 TGAAGATTGT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
78 60 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (78 bp):
CTATCTCCCAGGTCAACAGTGGAATAGGTTGAAGATTGTATATCCAAACTCCCTGGTCAGCAATG
CAATAGGTGAATT
Found at i:12295159 original size:78 final size:78
Alignment explanation
Indices: 12295024--12295181 Score: 219
Period size: 78 Copynumber: 2.0 Consensus size: 78
12295014 GTTGACGATT
* * **
12295024 GTGAGTCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTATGTCAAATCTCGTTGGTC
1 GTGAATCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTATATCAAATCTCCCTGGTC
* *
12295089 AGCAGTGGAATAG
66 AGCAATAGAATAG
* **
12295102 GTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGA-ATCCTATCTCCCTGGT
1 GTGAATCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGT-ATATCAAATCTCCCTGGT
12295166 CAGCAATAGAATAG
65 CAGCAATAGAATAG
12295180 GT
1 GT
12295182 TGAAGATTGT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
78 69 0.99
79 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (78 bp):
GTGAATCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTATATCAAATCTCCCTGGTC
AGCAATAGAATAG
Found at i:12295694 original size:44 final size:44
Alignment explanation
Indices: 12295625--12298226 Score: 486
Period size: 44 Copynumber: 61.1 Consensus size: 44
12295615 CCACTAGCCT
* * *
12295625 TATCTCCCTGGTCAGTAATGTAATAGGTTGAAGGTTA-T-AAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAA-GATAGTGAA-TCC
*
12295669 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
** * *
12295713 TATCTCCCTGGTCAACAGCGG-A-A---T--AG---GTCAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
** **
12295747 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * ** *
12295791 TATCTCCCTGAG-CAGCAGTGGAGA-AGTTTGAAAATTACAG-ATCT
1 TATCTCCCTG-GTCAGTAGTGGA-ATAGGTTGAAGA-TAGTGAATCC
* * ** * * * * * *
12295835 TATCTCCCTAAGT-AGTAGTAGAGCAGATCGAAGATGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * * ** * ** *
12295879 TATCTTTCCAATGG--AGTAG-GCAAGCAGATAT-AAGCCACT-AGGCT
1 TATC--TCC-CTGGTCAGTAGTGGAA-TAGGT-TGAAGATAGTGAATCC
*
12295923 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
** * *
12295967 TATCTCCCTGGTCAACAGCGG-A-A---T--AG---GTCAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
** **
12296001 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * *
12296045 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTA-TAAATCC
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGA-TAGTGAATCC
* * ** * * * * * *
12296089 TATCTCCCTAAG-CAGAAGTGGAGCAGATCGAAGATGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * * ** * ** *
12296133 TATCTTTCCAAT-GT-AGTAG-GCAAGCAGATAT-AAGCCACT-AGGCT
1 TATC--TCC-CTGGTCAGTAGTGGAA-TAGGT-TGAAGATAGTGAATCC
* * *
12296177 TATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGT-AAGTCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAA-TCC
* * * * *
12296221 AATCT-CCTCGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCC
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
** * * *
12296265 TATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGT-ATGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGA-ATCC
* * * * * * *
12296309 AAACTCCTTGGTCTGCAGT-GCA-A--TT---G---GTGAATTC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * *
12296343 TATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * *
12296387 TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
** * * ** *
12296431 TATCTCCCTGAG-CAGCGGTGGAGTAGGTTGAAAATTACAG-ATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGA-TAGTGAATCC
** ** * * ** * *
12296475 TATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGACGGCGAATCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * * ** * *
12296519 TATCTTCCCAAGAT-AGTAG-GGAATAAGATTTAAGCCACT--AGCC
1 TATC-TCCC-TGGTCAGTAGTGGAAT-AGGTTGAAGATAGTGAATCC
* * *
12296562 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAAATTGT-AAGTTC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAA-TCC
* * * * * *
12296607 TATCTCCCTAGTCAGCAGTGGAATAGGTGGACGATTGTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* ** * *
12296651 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGT-AAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAA-TCC
* **
12296695 AATCTCGTTGGTCAGTAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * *
12296729 TATCTCCCTGGTTAGCAGAGGAATAGGTTGAAGATTGTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * * *
12296773 TATCTCCCTGGTCAGCAATAGAATAGATTGAAGATTGTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
** * * * *
12296817 TATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTA-T-AGATCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGA-TAGTGA-ATCC
** ** * ** * **
12296861 TATCTCCCAAAG-CAGTAGTGGAGCAGATTGAAGACGGCGAATGT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * * ** *
12296905 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACTCG---CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATAGT-GAATCC
* * * *
12296948 TTATCTCCGTGGTCAGTAGGGGAATAGGTTG-A-ATATTGCAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTG-AA-TCC
* *
12296993 TATCTCCCTGGTCAGCAGT-G---A-GAT--AG---GTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * *
12297027 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * * * *
12297071 TATCTCTCTGGTGAGTAGTGTAATAGGTTGTAGATTGTAAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * * * **
12297115 TATCTCCCTGAG-CAGCAGTGTAGTAGGTTTAAAATAACAGATAT--
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGAT-AGTGA-ATCC
* * * * ** * * * ** * *
12297159 TAACTCTCTAAGT-AGTAGTAGAGCAGATCGAAGACAACGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* ** * * * ** * *
12297203 TATATTCCCAAG-CTGCTAG-GGAAGCAGATTTG-AGCCACT--AGCC
1 TAT-CTCCCTGGTCAG-TAGTGGAA-TAG-GTTGAAGATAGTGAATCC
* * *
12297246 TTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTA-T-AAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAA-GATAGTGAA-TCC
* * * *
12297291 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* *
12297335 TATCTCCCTGGTC--------AACA-GTTG-A-CTAGGTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATA-GTGAATCC
* * *
12297369 TATCTCTCTGTTCAGTAGTGGAATAGGTTGAAGATTGTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * ** *
12297413 TATCTCCCTAAG-CAGTAGTGGAGA-AGGTTGAAAATTACAG-ATCT
1 TATCTCCCT-GGTCAGTAGTGGA-ATAGGTTGAAGA-TAGTGAATCC
* * ** * * ** * * **
12297457 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTGT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * * * ** * *
12297501 TATCTTCCCAAGAT-AGTAG-GGAAGAAGATTTAAGCCACT--AGCC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATAGTGAATCC
** * *
12297544 TTATCTTTCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AA--G
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * *
12297586 T-TCTCCCTGATCAGTAGTGGAATAGGTTGAACATTGT-AAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAA-TCC
* * ** *
12297629 TATCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
** * *
12297673 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAA-TCC
*
12297717 TATCTCCCTGGTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * * *
12297751 GATCTCCCTGGTCAGCAGTGGAATTGGTTGAAAATTGTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * *
12297795 TATCTCCCTGGTCAGGAATGGAATAGGTTGAAGATTGTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * * *
12297839 TATGAT-CCTGAG-CAGCAGTGGAGTAGGTTGAAAATTA-T-AGATCT
1 TAT-CTCCCTG-GTCAGTAGTGGAATAGGTTGAAGA-TAGTGA-ATCC
* * * ** *
12297883 TATCTCCAAC-AG-CAGTAGTGGAACA-GATGAAGACGGTGAATCT
1 TATCTCC--CTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * ** ** * *
12297926 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTCAGCCACT--AGCC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATAGTGAATCC
* *
12297969 TTATTTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAA-TCC
* * ** *
12298014 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* ** ** *
12298058 TATCGCCCTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGCCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAA-TCC
*
12298102 TATCTCCCTGGTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * *
12298136 TATATCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
* * * * *
12298180 TATCTCCC-GCGTCAGCAATGAAATAGGTTGAAGGTTGTGAATCC
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
12298224 TAT
1 TAT
12298227 GTTCCAGAGC
Statistics
Matches: 1880, Mismatches: 459, Indels: 438
0.68 0.17 0.16
Matches are distributed among these distances:
33 1 0.00
34 172 0.09
35 21 0.01
36 10 0.01
37 11 0.01
38 4 0.00
39 14 0.01
40 38 0.02
41 18 0.01
42 35 0.02
43 157 0.08
44 1246 0.66
45 138 0.07
46 13 0.01
47 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCC
Found at i:12295756 original size:34 final size:34
Alignment explanation
Indices: 12295708--12295774 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
12295698 GAAGATAGTG
*
12295708 AATCGTATCTCCCTGGTCAACAGCGGAATAGGTC
1 AATCCTATCTCCCTGGTCAACAGCGGAATAGGTC
*
12295742 AATCCTATCTCCCTGGTCAACAGTGGAATAGGT
1 AATCCTATCTCCCTGGTCAACAGCGGAATAGGT
12295775 TGAAGATTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (34 bp):
AATCCTATCTCCCTGGTCAACAGCGGAATAGGTC
Found at i:12295795 original size:78 final size:81
Alignment explanation
Indices: 12295666--12296072 Score: 255
Period size: 78 Copynumber: 5.0 Consensus size: 81
12295656 AGGTTATAAG
* *
12295666 TCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCGTATCTCCCTG-GTCAACA
1 TCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATACTGAATCCTATCTCCCTGAGTCAACA
12295730 GCGGA-ATAGGTCA-A
66 GCGGAGATAGGTCACA
** * *
12295744 TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGAG-CAGCA
1 TCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATACTGAATCCTATCTCCCTGAGTCAACA
* *
12295808 GTGGAGA-AGTTTGAAAATTACAGA
66 GCGGAGATAG---G-----T-CACA
* * * ** * * * * * *
12295832 TCTTATCTCCCTAAGT-AGTAGTAGAGCAGATCGAAGATGGC-GATTCTTATCTTTCCAATGGAG
1 TCCTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGAT-ACTGAATCCTATC--TCC-CT-GAG
* * * * *
12295895 T-AGGCAAGCAGATATAAGCCACTA
60 TCA-AC-AGCGGAGATAGGTCAC-A
* * * *
12295919 GGCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCGTATCTCCCTG-GTCAAC
1 -TCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATACTGAATCCTATCTCCCTGAGTCAAC
12295983 AGCGGA-ATAGGTCA-A
65 AGCGGAGATAGGTCACA
** * *
12295998 TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGAG-CAGCA
1 TCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATACTGAATCCTATCTCCCTGAGTCAACA
*
12296062 GTGGAG-TAGGT
66 GCGGAGATAGGT
12296073 TGAAAATTAT
Statistics
Matches: 249, Mismatches: 51, Indels: 58
0.70 0.14 0.16
Matches are distributed among these distances:
78 125 0.50
79 4 0.02
81 7 0.03
82 5 0.02
83 3 0.01
84 2 0.01
85 1 0.00
86 6 0.02
87 5 0.02
88 71 0.29
89 3 0.01
90 3 0.01
91 1 0.00
92 5 0.02
93 2 0.01
94 5 0.02
95 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (81 bp):
TCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATACTGAATCCTATCTCCCTGAGTCAACA
GCGGAGATAGGTCACA
Found at i:12295842 original size:122 final size:121
Alignment explanation
Indices: 12295625--12296097 Score: 338
Period size: 122 Copynumber: 3.8 Consensus size: 121
12295615 CCACTAGCCT
** * * * * *
12295625 TATCTCCCTGGTCAGTAATGTAATAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGTAGTGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAA-TCCTATCTCCCTGGTCAGCAGTGG
* *
12295690 AATAGGTTGAAGATAGTGAATCGTATCTCCCTGGTCAACAGCGGAATAGGTCAATCC
65 AATAGGTTGAAAATAGAGAATCGTATCTCCCTGGTCAACAGCGGAATAGGTCAATCC
12295747 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGAG-CAGCAGTG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCT-AATCCTATCTCCCTG-GTCAGCAGTG
* * * * *
12295811 GAGA-AGTTTGAAAATTACAG-ATCTTATCTCCCTAAGTAGT-AGTAGAGCAGATCGAAGATGG-
64 GA-ATAGGTTGAAAA-TAGAGAATCGTATCTCCCT--G--GTCA--ACAGC-G---GAATA-GGT
* *
12295872 CGATTCT
116 C-AATCC
* ** * * * *** ** * *
12295879 TATCTTTCCAATGG--AGTAG-GCAAGCAGATAT-AAGCCACTAGGCTTATCTCCCTGGTCAGTA
1 TATC--TCC-CTGGTCAACAGTGGAA-TAGGT-TGAAGATTCTAATCCTATCTCCCTGGTCAGCA
* *
12295940 GTGGAATAGGTTGAAGATAGTGAATCGTATCTCCCTGGTCAACAGCGGAATAGGTCAATCC
61 GTGGAATAGGTTGAAAATAGAGAATCGTATCTCCCTGGTCAACAGCGGAATAGGTCAATCC
12296001 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGAG-CAGCAGTG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCT-AATCCTATCTCCCTG-GTCAGCAGTG
* * *
12296065 GAGTAGGTTGAAAATTATA-AATCCTATCTCCCT
64 GAATAGGTTGAAAA-TAGAGAATCGTATCTCCCT
12296098 AAGCAGAAGT
Statistics
Matches: 262, Mismatches: 56, Indels: 66
0.68 0.15 0.17
Matches are distributed among these distances:
119 3 0.01
120 4 0.02
121 11 0.04
122 130 0.50
123 15 0.06
124 1 0.00
125 1 0.00
126 3 0.01
127 8 0.03
128 3 0.01
129 1 0.00
130 1 0.00
131 10 0.04
132 53 0.20
133 11 0.04
134 4 0.02
135 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (121 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAATCCTATCTCCCTGGTCAGCAGTGGA
ATAGGTTGAAAATAGAGAATCGTATCTCCCTGGTCAACAGCGGAATAGGTCAATCC
Found at i:12295957 original size:254 final size:254
Alignment explanation
Indices: 12295669--12296300 Score: 1007
Period size: 254 Copynumber: 2.4 Consensus size: 254
12295659 TTATAAGTCC
12295669 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCGTATCTCCCTGGTCAACAGCGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCGTATCTCCCTGGTCAACAGCGG
12295734 AATAGGTCAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCC
66 AATAGGTCAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCC
* * * * *
12295799 TGAGCAGCAGTGGAGAAGTTTGAAAATTACAGATCTTATCTCCCTAAGTAGTAGTAGAGCAGATC
131 TGAGCAGCAGTGGAGAAGGTTGAAAATTACAAATCCTATCTCCCTAAGCAGAAGTAGAGCAGATC
12295864 GAAGATGGCGATTCTTATCTTTCCAATGGAGTAGGCAAGCAGATATAAGCCACTAGGCT
196 GAAGATGGCGATTCTTATCTTTCCAATGGAGTAGGCAAGCAGATATAAGCCACTAGGCT
12295923 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCGTATCTCCCTGGTCAACAGCGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCGTATCTCCCTGGTCAACAGCGG
12295988 AATAGGTCAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCC
66 AATAGGTCAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCC
* * *
12296053 TGAGCAGCAGTGGAGTAGGTTGAAAATTATAAATCCTATCTCCCTAAGCAGAAGTGGAGCAGATC
131 TGAGCAGCAGTGGAGAAGGTTGAAAATTACAAATCCTATCTCCCTAAGCAGAAGTAGAGCAGATC
*
12296118 GAAGATGGCGATTCTTATCTTTCCAATGTAGTAGGCAAGCAGATATAAGCCACTAGGCT
196 GAAGATGGCGATTCTTATCTTTCCAATGGAGTAGGCAAGCAGATATAAGCCACTAGGCT
* * * * *
12296177 TATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGT-AAGTCGAATCT-CCTCGGTCAGCAGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAA-TCGTATCTCCCT-GGTCAACAGC
*
12296240 GGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATT
64 GGAATAGG-T--C-A-----A-TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATT
12296301 GTATGTCCAA
Statistics
Matches: 351, Mismatches: 15, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
253 5 0.01
254 304 0.87
255 1 0.00
257 1 0.00
258 1 0.00
263 1 0.00
264 38 0.11
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (254 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGAATCGTATCTCCCTGGTCAACAGCGG
AATAGGTCAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCC
TGAGCAGCAGTGGAGAAGGTTGAAAATTACAAATCCTATCTCCCTAAGCAGAAGTAGAGCAGATC
GAAGATGGCGATTCTTATCTTTCCAATGGAGTAGGCAAGCAGATATAAGCCACTAGGCT
Found at i:12295992 original size:298 final size:297
Alignment explanation
Indices: 12295449--12295994 Score: 758
Period size: 298 Copynumber: 1.8 Consensus size: 297
12295439 NNNNNNNNNN
* ** * * *
12295449 TATCTCTCTGGTCAGTAGTGTAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGCAGTGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAATCCTATCTCCCTGAGCAGCAGTGG
* *
12295514 AGTAGGTTTAAAATAACAGATATTAACTCTCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGATT
66 AGTAAGTTTAAAATAACAGATATTAACTCCCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGATT
* * *
12295579 CTTATATTCCCAAGCTGGTAGGGAAGCAAATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAAT
131 CTTATATTCCCAAGC-GGTAGGCAAGCAAATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAAT
* * ** *
12295644 GTAATAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGA
195 GGAATAGGTTGAAGGATATAAGTCCTATCTCCCTGGTCAACAGCGGAATAGGTTGAAGATAGTGA
12295709 ATCGTATCTCCCTGGTCAACAGCGGAATAGGTCAATCC
260 ATCGTATCTCCCTGGTCAACAGCGGAATAGGTCAATCC
*
12295747 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGAGCAGCAGTGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAATCCTATCTCCCTGAGCAGCAGTGG
* * * **
12295812 AG-AAGTTTGAAAATTACAGATCTTATCTCCCTAAGTAGTAGTAGAGCAGATCGAAGATGGCGAT
66 AGTAAGTTT-AAAATAACAGATATTAACTCCCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGAT
* * * *
12295876 TCTTATCTTTCCAATG-GAGTAGGCAAGCAGATATAAGCCACTAGGCTTATCTCCCTGGTCAGTA
130 TCTTATATTCCCAA-GCG-GTAGGCAAGCAAATATAAGCCACTAGCCTTATCTCCCTGGTCAGTA
* *
12295940 GTGGAATAGGTTGAA-GATAGTGAA-TCGTATCTCCCTGGTCAACAGCGGAATAGGT
193 ATGGAATAGGTTGAAGGATA-T-AAGTCCTATCTCCCTGGTCAACAGCGGAATAGGT
12295995 CAATCCTATC
Statistics
Matches: 215, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
297 9 0.04
298 203 0.94
299 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (297 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAATCCTATCTCCCTGAGCAGCAGTGG
AGTAAGTTTAAAATAACAGATATTAACTCCCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGATT
CTTATATTCCCAAGCGGTAGGCAAGCAAATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAATG
GAATAGGTTGAAGGATATAAGTCCTATCTCCCTGGTCAACAGCGGAATAGGTTGAAGATAGTGAA
TCGTATCTCCCTGGTCAACAGCGGAATAGGTCAATCC
Found at i:12296010 original size:34 final size:34
Alignment explanation
Indices: 12295962--12296028 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
12295952 GAAGATAGTG
*
12295962 AATCGTATCTCCCTGGTCAACAGCGGAATAGGTC
1 AATCCTATCTCCCTGGTCAACAGCGGAATAGGTC
*
12295996 AATCCTATCTCCCTGGTCAACAGTGGAATAGGT
1 AATCCTATCTCCCTGGTCAACAGCGGAATAGGT
12296029 TGAAGATTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (34 bp):
AATCCTATCTCCCTGGTCAACAGCGGAATAGGTC
Found at i:12296046 original size:298 final size:292
Alignment explanation
Indices: 12295449--12296111 Score: 734
Period size: 298 Copynumber: 2.2 Consensus size: 292
12295439 NNNNNNNNNN
* * * * *
12295449 TATCTCTCTGGTCAGTAGTGTAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATAAATCCTATCTCCCTGAGCAGCAGTGG
* *
12295514 AGTAGGTTTAAAATAACAGATATTAACTCTCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGATT
66 AGTAAGTTTAAAATAACAGATATTAACTCCCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGATT
* * *
12295579 CTTATATTCCCAAGCTGGTAGGGAAGCAAATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAAT
131 CTTATATTCCCAAGC-GGTAGGCAAGCAAATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAAT
* * ** * *
12295644 GTAATAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATAGTGA
195 GGAATAGGTTGAAGGATATAAGTCCTATCTCCCTGGTCAACAGCGGAATA-G-T-AAG--AGTCA
*
12295709 ATCGTATCTCCCTGGTCAACAGCGGAATAGGTCAATCC
255 ATCCTATCTCCCTGGTCAACAGCGGAATAGGTCAATCC
* * *
12295747 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGAGCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATAAATCCTATCTCCCTGAGCAGCAGTGG
* * * **
12295812 AG-AAGTTTGAAAATTACAGATCTTATCTCCCTAAGTAGTAGTAGAGCAGATCGAAGATGGCGAT
66 AGTAAGTTT-AAAATAACAGATATTAACTCCCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGAT
* * * *
12295876 TCTTATCTTTCCAATG-GAGTAGGCAAGCAGATATAAGCCACTAGGCTTATCTCCCTGGTCAGTA
130 TCTTATATTCCCAA-GCG-GTAGGCAAGCAAATATAAGCCACTAGCCTTATCTCCCTGGTCAGTA
* *
12295940 GTGGAATAGGTTGAA-GATAGTGAA-TCGTATCTCCCTGGTCAACAGCGG-A-A-T-AG-GTCAA
193 ATGGAATAGGTTGAAGGATA-T-AAGTCCTATCTCCCTGGTCAACAGCGGAATAGTAAGAGTCAA
*
12295998 TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCC
256 TCCTATCTCCCTGGTCAACAGCGGAATA----G--G--TC--AATCC
* * * *
12296045 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTATAAATCCTATCTCCCTAAGCAGAAGTG
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTATAAATCCTATCTCCCTGAGCAGCAGTG
12296109 GAG
65 GAG
12296112 CAGATCGAAG
Statistics
Matches: 311, Mismatches: 38, Indels: 32
0.82 0.10 0.08
Matches are distributed among these distances:
288 30 0.10
291 2 0.01
292 1 0.00
293 1 0.00
294 1 0.00
296 3 0.01
297 10 0.03
298 259 0.83
299 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (292 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATAAATCCTATCTCCCTGAGCAGCAGTGG
AGTAAGTTTAAAATAACAGATATTAACTCCCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGATT
CTTATATTCCCAAGCGGTAGGCAAGCAAATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAATG
GAATAGGTTGAAGGATATAAGTCCTATCTCCCTGGTCAACAGCGGAATAGTAAGAGTCAATCCTA
TCTCCCTGGTCAACAGCGGAATAGGTCAATCC
Found at i:12296508 original size:386 final size:384
Alignment explanation
Indices: 12295996--12297021 Score: 1563
Period size: 386 Copynumber: 2.7 Consensus size: 384
12295986 GGAATAGGTC
* * * *
12295996 AATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGAGCAGC
1 AATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGC
* * * * *
12296061 AGTGGAGTAGGTTGAAAATTATAAATCCTATCTCCCTAAGCAGAAGTGGAGCAGATCGAAGATGG
66 AGTGGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGG
* * * * * *
12296126 CGATTCTTATCTTTCCAATGTAGTAGGCAAGCAGATATAAGCCACTAGGCTTATCTCCCTGGTCA
131 CGAATCTTATCTTCCCAA-GTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCA
* * *
12296191 GTAGTGGAATAGGCTGAAGATTGTAAGTCGAATCT-CCTCGGTCAGCAGTGGAATAGGTTGACGA
195 GTAGTGGAATAGGTTGAAAATTGTAAGTC-AATCTCCCT-GGTCAGCAGTGGAATAGGTGGACGA
*
12296255 TTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGTATGTCCAAA-CTCCTTG
258 TTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGTAAGT-CAAATCTCCTTG
* * * *
12296319 GTCTGCAGTGCAATTGGTGAATTCTATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTG
322 GTCAGCAGTGCAATAGGTGAATCCTATCTCCCAGGTTAGCAGAGGAATAGGTTGAAGATTGTG
12296382 AATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGC
1 AATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGC
* *
12296447 GGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGG
66 AGTGGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGG
*
12296512 CGAATCTTATCTTCCCAAGATAGTAGGGAATAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCA
131 CGAATCTTATCTTCCCAAG-TAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCA
* *
12296577 GTAGTGGAATAGGTTGAAAATTGTAAGTTCTATCTCCCTAGTCAGCAGTGGAATAGGTGGACGAT
195 GTAGTGGAATAGGTTGAAAATTGTAAG-TCAATCTCCCTGGTCAGCAGTGGAATAGGTGGACGAT
* * *
12296642 TGTGAGTCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCGTTGGT
259 TGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGTAAGTCAAATCTCCTTGGT
* * *
12296707 CAGTAGTGGAATAGGTGAATCCTATCTCCCTGGTTAGCAGAGGAATAGGTTGAAGATTGTG
324 CAGCAGTGCAATAGGTGAATCCTATCTCCCAGGTTAGCAGAGGAATAGGTTGAAGATTGTG
* *
12296768 AATCCTATCTCCCTGGTCAGCAATAGAATAGATTGAAGATTGTGAATCCTATCTCCCTGACCAGC
1 AATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGC
*
12296833 AGTGGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATTGAAGACGG
66 AGTGGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGG
* * *
12296898 CGAATGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTCGCCTTATCTCCGTGGTCA
131 CGAATCTTATCTTCCCAA-GTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCA
* * *
12296963 GTAGGGGAATAGGTTGAATATTGCAAGTCATATCTCCCTGGTCAGCAGT-GAGATAGGTG
195 GTAGTGGAATAGGTTGAAAATTGTAAGTCA-ATCTCCCTGGTCAGCAGTGGA-ATAGGTG
12297022 AATCCTATCT
Statistics
Matches: 585, Mismatches: 48, Indels: 14
0.90 0.07 0.02
Matches are distributed among these distances:
385 9 0.02
386 570 0.97
387 6 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (384 bp):
AATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGC
AGTGGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGG
CGAATCTTATCTTCCCAAGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAG
TAGTGGAATAGGTTGAAAATTGTAAGTCAATCTCCCTGGTCAGCAGTGGAATAGGTGGACGATTG
TGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGTAAGTCAAATCTCCTTGGTCA
GCAGTGCAATAGGTGAATCCTATCTCCCAGGTTAGCAGAGGAATAGGTTGAAGATTGTG
Found at i:12296778 original size:78 final size:78
Alignment explanation
Indices: 12296643--12296787 Score: 211
Period size: 78 Copynumber: 1.9 Consensus size: 78
12296633 GTGGACGATT
* * **
12296643 GTGAGTCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCGTTGGTC
1 GTGAATCCTATCTCCCTGGTTAACAGAGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTC
12296708 AGTAGTGGAATAG
66 AGTAGTGGAATAG
* **
12296721 GTGAATCCTATCTCCCTGGTTAGCAGAGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGT
1 GTGAATCCTATCTCCCTGGTTAACAGAGGAATAGGTTGAAGATTGT-AAGTCAAATCTCCCTGGT
12296785 CAG
65 CAG
12296788 CAATAGAATA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 57 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (78 bp):
GTGAATCCTATCTCCCTGGTTAACAGAGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTC
AGTAGTGGAATAG
Found at i:12296837 original size:122 final size:122
Alignment explanation
Indices: 12296606--12296844 Score: 291
Period size: 122 Copynumber: 2.0 Consensus size: 122
12296596 ATTGTAAGTT
* * * * * *
12296606 CTATCTCCCTAGTCAGCAGTGGAATAGGTGGACGATTGTGAGTCCTATCTCCCTGGTTAACAGTG
1 CTATCTCCCTAGTCAGCAGAGGAATAGGTGGAAGATTGTGAATCCTATCTCCCTGGTCAACAATA
* ** ** *
12296671 GAATAGGTTGAAGATTGTAAGTCAAATCTCGTTGGTCAGTAGTGGAATAGGTGAATC
66 GAATAGATTGAAGATTGTAAGTCAAATCTCCCTGACCAGCAGTGGAATAGGTGAATC
* * * *
12296728 CTATCTCCCTGGTTAGCAGAGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATA
1 CTATCTCCCTAGTCAGCAGAGGAATAGGTGGAAGATTGTGAATCCTATCTCCCTGGTCAACAATA
** *
12296793 GAATAGATTGAAGATTGTGAA-TCCTATCTCCCTGACCAGCAGTGGAGTAGGT
66 GAATAGATTGAAGATTGT-AAGTCAAATCTCCCTGACCAGCAGTGGAATAGGT
12296845 TGAAAATTAT
Statistics
Matches: 97, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
122 95 0.98
123 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (122 bp):
CTATCTCCCTAGTCAGCAGAGGAATAGGTGGAAGATTGTGAATCCTATCTCCCTGGTCAACAATA
GAATAGATTGAAGATTGTAAGTCAAATCTCCCTGACCAGCAGTGGAATAGGTGAATC
Found at i:12296879 original size:166 final size:166
Alignment explanation
Indices: 12296563--12296882 Score: 367
Period size: 166 Copynumber: 1.9 Consensus size: 166
12296553 CCACTAGCCT
* * * * *
12296563 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAAATTGTAAGTTCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGCAGAGGAATAGGTTGAAAATTGTAAGTCCTATCTCCCTAGTCAGCAATAG
* * * *** * *
12296628 AATAGGTGGACGATTGTGAGTCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGT
66 AATAGATGGAAGATTGTGAATCCTATCTCCCTGACCAACAGTGGAATAGGTTGAAAATTATAAGT
****
12296693 CAAATCTCGTTGGTCAGTAGTGGAATAGGTGAATCC
131 CAAATCTCCAAAGTCAGTAGTGGAATAGGTGAATCC
* * *
12296729 TATCTCCCTGGTTAGCAGAGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAATA
1 TATCTCCCTGGTCAGCAGAGGAATAGGTTGAAAATTGT-AAGTCCTATCTCCCTAGTCAGCAATA
* * *
12296793 GAATAGATTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTAT-AG
65 GAATAGATGGAAGATTGTGAATCCTATCTCCCTGACCAACAGTGGAATAGGTTGAAAATTATAAG
**
12296857 ATCTTATCTCCCAAAG-CAGTAGTGGA
130 -TCAAATCT-CCAAAGTCAGTAGTGGA
12296883 GCAGATTGAA
Statistics
Matches: 126, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
165 2 0.02
166 120 0.95
167 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (166 bp):
TATCTCCCTGGTCAGCAGAGGAATAGGTTGAAAATTGTAAGTCCTATCTCCCTAGTCAGCAATAG
AATAGATGGAAGATTGTGAATCCTATCTCCCTGACCAACAGTGGAATAGGTTGAAAATTATAAGT
CAAATCTCCAAAGTCAGTAGTGGAATAGGTGAATCC
Found at i:12296879 original size:298 final size:298
Alignment explanation
Indices: 12296651--12297744 Score: 807
Period size: 298 Copynumber: 3.7 Consensus size: 298
12296641 TTGTGAGTCC
* * * ** *
12296651 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCGTTGGTCAGTAGTG-
1 TATCTCCCTGGTCAACAGGGGAATAGGTTGAAGATTGCAAGTCAAATCTCCCTGGTCAGCAGTGA
*
12296715 GAATAGGTGAATCCTATCTCCCTGGTTAGCAGAGGAATAGGTTGAAGATTGTGAATCCTATCTCC
66 G-ATAGGTGAATCCTATCTCCCTGGTCAGCAGAGGAATAGGTTGAAGATTGTGAATCCTATCTCC
*
12296780 CTGGTCAGCAATAG-AATAGATTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGG
130 CTGGTCAGCAAT-GTAATAGATTGAAGATTGTAAATCCTATCTCCCTGACCAGCAGTGGAGTAGG
* *
12296844 TTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATTGAAGACGGCGAATGTTATC
194 TTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAACAGATTGAAAACGGCGAATGTTATC
* ** * *
12296909 TTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTCGCCT
259 TTCCCAAGGTAGCAGGGAAGAAGATGGAAGACACTAGCCT
* ** * *
12296949 TATCTCCGTGGTCAGTAGGGGAATAGGTTGAATATTGCAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAACAGGGGAATAGGTTGAAGATTGCAAGTCAAATCTCCCTGGTCAGCAGTGA
* * * * *
12297014 GATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAATCCTATCTCTC
66 GATAGGTGAATCCTATCTCCCTGGTCAGCAGAGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* * * * * * *
12297079 TGGTGAGTAGTGTAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGCAGTGTAGTAGGTT
131 TGGTCAGCAATGTAATAGATTGAAGATTGTAAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTT
* * * * * * * * * * * * ** * * *
12297144 TAAAATAACAGATATTAACTCTCTAAGTAGTAGTAGAGCAGATCGAAGACAACGATTCTTATATT
196 GAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAACAGATTGAAAACGGCGAATGTTATCTT
* * * *
12297209 CCCAAGCT-GCTAGGGAAGCAGATTTG-AGCCACTAGCCT
261 CCCAAGGTAGC-AGGGAAGAAGA-TGGAAGACACTAGCCT
** ** * * ** **
12297247 TATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGTG-
1 TATCTCCCTGGTCAACAGGGGAATAGGTTGAAGATTGCAAGTCAAATCTCCCTGGTCAGCAGTGA
** ** * * * * * ** *
12297311 GAATAGGTTGAAGATTGTGAGTCT-TAT-CTC-CCTG-GTCAACA-GTTGACTA-GGTGAATCCT
66 G-ATAGG-TG-A-ATCCT-A-TCTCCCTGGTCAGCAGAG-GAATAGGTTGAAGATTGTGAATCCT
* * * * * * * * * *
12297370 ATCTCTCTGTTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGTAGTGGA
124 ATCTCCCTGGTCAGCAATGTAATAGATTGAAGATTGTAAATCCTATCTCCCTGACCAGCAGTGGA
* * * * * * * *
12297435 GAAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTG
189 GTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAACAGATTGAAAACGGCGAATG
* * ** *
12297500 TTATCTTCCCAAGATAGTAGGGAAGAAGATTTAAGCCACTAGCCT
254 TTATCTTCCCAAGGTAGCAGGGAAGAAGATGGAAGACACTAGCCT
** ** * * * *
12297545 TATCTTTCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT----TCTCCCTGATCAGTAGTG-
1 TATCTCCCTGGTCAACAGGGGAATAGGTTGAAGATTGCAAGTCAAATCTCCCTGGTCAGCAGTGA
* * * *
12297605 GAATAGGTTGAACATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTCTGAG
66 G-ATA-G--G-----TG-AA-TCCTATCTCCCTGGTCAGCAGAGGAATAGGTTGAAGATTGTGAA
* * * * * * **
12297670 TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAG
120 TCCTATCTCCCTGGTCAGCAATGTAATAGATTGAAGATTGTAAATCCTATCTCCCTGACCAGCAG
*
12297735 TGGAATAGGT
185 TGGAGTAGGT
12297745 GAATCCGATC
Statistics
Matches: 644, Mismatches: 125, Indels: 48
0.79 0.15 0.06
Matches are distributed among these distances:
294 21 0.03
295 1 0.00
297 6 0.01
298 496 0.77
299 17 0.03
300 8 0.01
301 13 0.02
302 7 0.01
303 10 0.02
304 65 0.10
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (298 bp):
TATCTCCCTGGTCAACAGGGGAATAGGTTGAAGATTGCAAGTCAAATCTCCCTGGTCAGCAGTGA
GATAGGTGAATCCTATCTCCCTGGTCAGCAGAGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
TGGTCAGCAATGTAATAGATTGAAGATTGTAAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTT
GAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAACAGATTGAAAACGGCGAATGTTATCTT
CCCAAGGTAGCAGGGAAGAAGATGGAAGACACTAGCCT
Found at i:12297041 original size:34 final size:35
Alignment explanation
Indices: 12296993--12297059 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 35
12296983 TTGCAAGTCA
12296993 TATCTCCCTGGTCAGCAGT-GAGATAGG-TGAATCC
1 TATCTCCCTGGTCAGCAGTGGA-ATAGGTTGAATCC
* *
12297027 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAT
12297060 ATTGTGAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 22 0.76
35 7 0.24
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (35 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAATCC
Found at i:12297803 original size:78 final size:78
Alignment explanation
Indices: 12297674--12297822 Score: 228
Period size: 78 Copynumber: 1.9 Consensus size: 78
12297664 TCTGAGTCCT
* * *
12297674 ATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGGA
1 ATCTCCCTGGTCAACAGTGGAATAGGTTGAAAATTGTAAGTCCTATCTCCCTGGTCAGCAATGGA
12297739 ATAGGTGAATCCG
66 ATAGGTGAATCCG
* * *
12297752 ATCTCCCTGGTCAGCAGTGGAATTGGTTGAAAATTGTGAA-TCCTATCTCCCTGGTCAGGAATGG
1 ATCTCCCTGGTCAACAGTGGAATAGGTTGAAAATTGT-AAGTCCTATCTCCCTGGTCAGCAATGG
12297816 AATAGGT
65 AATAGGT
12297823 TGAAGATTGT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
78 62 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (78 bp):
ATCTCCCTGGTCAACAGTGGAATAGGTTGAAAATTGTAAGTCCTATCTCCCTGGTCAGCAATGGA
ATAGGTGAATCCG
Found at i:12297804 original size:166 final size:166
Alignment explanation
Indices: 12297587--12297889 Score: 416
Period size: 166 Copynumber: 1.8 Consensus size: 166
12297577 GATTGTAAGT
* * *
12297587 TCTCCCTGATCAGTAGTGGAATAGGTTGAACATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAA
1 TCTCCCTGATCAGCAGTGGAATAGGTTGAAAATTGTAAGTCCTATCTCCCTGGTCAGCAATGGAA
* * * *
12297652 TAAGTTGAAGATTCTGAGTCCTAT-CTCCCTG-GTCAACAGTGGAATAGGTTGAAGATTGTA-AG
66 TAAGTTGAAGATTCTGAATCCTATGAT-CCTGAG-CAACAGTGGAATAGGTTGAAAATTATAGA-
12297714 TCTTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGA
128 TCTTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGA
* * *
12297753 TCTCCCTGGTCAGCAGTGGAATTGGTTGAAAATTGTGAA-TCCTATCTCCCTGGTCAGGAATGGA
1 TCTCCCTGATCAGCAGTGGAATAGGTTGAAAATTGT-AAGTCCTATCTCCCTGGTCAGCAATGGA
* * * *
12297817 ATAGGTTGAAGATTGTGAATCCTATGATCCTGAGCAGCAGTGGAGTAGGTTGAAAATTATAGATC
65 ATAAGTTGAAGATTCTGAATCCTATGATCCTGAGCAACAGTGGAATAGGTTGAAAATTATAGATC
12297882 TTATCTCC
130 TTATCTCC
12297890 AACAGCAGTA
Statistics
Matches: 119, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
166 114 0.96
167 5 0.04
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (166 bp):
TCTCCCTGATCAGCAGTGGAATAGGTTGAAAATTGTAAGTCCTATCTCCCTGGTCAGCAATGGAA
TAAGTTGAAGATTCTGAATCCTATGATCCTGAGCAACAGTGGAATAGGTTGAAAATTATAGATCT
TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGA
Found at i:12298080 original size:385 final size:386
Alignment explanation
Indices: 12297587--12298427 Score: 1364
Period size: 385 Copynumber: 2.2 Consensus size: 386
12297577 GATTGTAAGT
* *
12297587 TCTCCCTGATCAGTAGTGGAATAGGTTGAACATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAA
1 TCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAA
* * * * *
12297652 TAAGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCT
66 TAGGTTGAAGATTCTGAGTCCTATCGCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCC
* *
12297717 TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGATCTCCCTGGTCAGCAGTGGAATTGGTTGA
131 TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGATATCCCTGGTCAGCAGTGGAATAGGTTGA
* *
12297782 AAATTGTGAATCCTATCTCCCTG-GTCAGGAATGGAATAGGTTGAAGATTGTGAATCCTATGATC
196 AAATTGTGAATCCTATCTCCC-GCGTCAGCAATGAAATAGGTTGAAGATTGTGAATCCTATGATC
* *
12297846 CTGAGCAGCAGTGGAGTAGGTTGAAAATTATAGATCTTATCTC-CAACAGCAGTAGTGGAACAGA
260 CAGAGCAGCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCTCTCAA-AGCAGTAGTGGAACAGA
* * * *
12297910 T-GAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTCAGCCACTAGCCTTA
324 TCGAAGACGGCGAATCTTACCTTCCCAAGATAGTAGGGAAGAAGATTTAAGCCACTAGCCTTA
* *
12297972 TTTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAA
1 TCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAA
12298037 TAGGTTGAAGATTCTGAGTCCTATCGCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCC
66 TAGGTTGAAGATTCTGAGTCCTATCGCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCC
*
12298102 TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATATCCCTGGTCAGCAGTGGAATAGGTTGA
131 TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGATATCCCTGGTCAGCAGTGGAATAGGTTGA
* * *
12298167 AGATTGTGAATCCTATCTCCCGCGTCAGCAATGAAATAGGTTGAAGGTTGTGAATCCTATGTTCC
196 AAATTGTGAATCCTATCTCCCGCGTCAGCAATGAAATAGGTTGAAGATTGTGAATCCTATGATCC
* *
12298232 AGAGCAGCAGTGGAGTAGGTTGAAAATTAGAGATCTTCTCTCTCAAAGCAGTAGTGGAGCAGATC
261 AGAGCAGCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCTCTCAAAGCAGTAGTGGAACAGATC
*
12298297 GAAGACGGCGAATCTTACCTTCCCAATATAGTAGGGAAGAAGATTTAAGCCACTAGCCTTA
326 GAAGACGGCGAATCTTACCTTCCCAAGATAGTAGGGAAGAAGATTTAAGCCACTAGCCTTA
* * * **
12298358 TCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGCAGTCAAA
1 TCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAA
12298423 TAGGT
66 TAGGT
12298428 GAGTCCTATC
Statistics
Matches: 420, Mismatches: 33, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
384 1 0.00
385 297 0.71
386 122 0.29
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (386 bp):
TCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAA
TAGGTTGAAGATTCTGAGTCCTATCGCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCC
TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCGATATCCCTGGTCAGCAGTGGAATAGGTTGA
AAATTGTGAATCCTATCTCCCGCGTCAGCAATGAAATAGGTTGAAGATTGTGAATCCTATGATCC
AGAGCAGCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCTCTCAAAGCAGTAGTGGAACAGATC
GAAGACGGCGAATCTTACCTTCCCAAGATAGTAGGGAAGAAGATTTAAGCCACTAGCCTTA
Found at i:12298184 original size:78 final size:78
Alignment explanation
Indices: 12298063--12298207 Score: 213
Period size: 78 Copynumber: 1.9 Consensus size: 78
12298053 AGTCCTATCG
* *
12298063 CCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTG-GTCAGCAGTGGAATA
1 CCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCC-GCGTCAGCAATGAAATA
12298127 GGTGAATCCTATAT
65 GGTGAATCCTATAT
* * *
12298141 CCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCGCGTCAGCAATGAAATA
1 CCCTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGCCCTATCTCCCGCGTCAGCAATGAAATA
12298205 GGT
65 GGT
12298208 TGAAGGTTGT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
77 1 0.02
78 57 0.95
79 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
CCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCGCGTCAGCAATGAAATAG
GTGAATCCTATAT
Found at i:12298240 original size:44 final size:44
Alignment explanation
Indices: 12298128--12298255 Score: 143
Period size: 44 Copynumber: 2.9 Consensus size: 44
12298118 AGTGGAATAG
* *
12298128 GTGAATCCTATATCCCTG-GTCAGCAGTGGAATAGGTTGAAGATT
1 GTGAATCCTATCT-CCAGAGTCAGCAGTGGAATAGGTTGAAGATT
* * * * *
12298172 GTGAATCCTATCTCCCGCGTCAGCAATGAAATAGGTTGAAGGTT
1 GTGAATCCTATCTCCAGAGTCAGCAGTGGAATAGGTTGAAGATT
* *
12298216 GTGAATCCTATGTTCCAGAG-CAGCAGTGGAGTAGGTTGAA
1 GTGAATCCTAT-CTCCAGAGTCAGCAGTGGAATAGGTTGAA
12298256 AATTAGAGAT
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
43 3 0.04
44 63 0.89
45 5 0.07
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (44 bp):
GTGAATCCTATCTCCAGAGTCAGCAGTGGAATAGGTTGAAGATT
Found at i:12298428 original size:298 final size:298
Alignment explanation
Indices: 12298058--12298601 Score: 795
Period size: 298 Copynumber: 1.8 Consensus size: 298
12298048 TTCTGAGTCC
* * **
12298058 TATCGCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGGTCAGCAGTGG
1 TATCGCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCATATCTCCCGGGTCAGCAGTCA
*
12298123 AATAGGTGAATCCTATATCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCT-CC
66 AATAGGTGAATCCTATATCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCC
* * * **
12298187 CGCGTCAGCAATGAAATAGGTTGAAGGTTGTGAATCCTATGTTCC-AGAGCAGCAGTGGAGTAGG
131 CG-GTCAGCAATGAAATAGGTTGAAGATTGTGAATCCTATCTCCCTA-AGCAGCAACGGAGTAGG
* * * *
12298251 TTGAAAATTAGAGATCTTCTCTCTCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTACC
194 TTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTACC
12298316 TTCCCAATATAGTAGGGAAGAAGATTTAAGCCACTAGCCT
259 TTCCCAATATAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* ** * *
12298356 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGCAGTCA
1 TATCGCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCATATCTCCCGGGTCAGCAGTCA
* * * * * * *
12298421 AATAGGTGAGTCCTATCTCCCTTGTCTGTAGTGGATTAGGTTAAAGATTGTGTATCCTATCTCCC
66 AATAGGTGAATCCTATATCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCC
* *
12298486 CGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAACGGAGTAGGTT
131 CGGTCAGCAATGAAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAACGGAGTAGGTT
*
12298551 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACG
196 GAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACG
12298602 NNNNNNNNNN
Statistics
Matches: 215, Mismatches: 29, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
298 210 0.98
299 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (298 bp):
TATCGCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCATATCTCCCGGGTCAGCAGTCA
AATAGGTGAATCCTATATCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCC
CGGTCAGCAATGAAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAACGGAGTAGGTT
GAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTACCTT
CCCAATATAGTAGGGAAGAAGATTTAAGCCACTAGCCT
Found at i:12298485 original size:78 final size:78
Alignment explanation
Indices: 12298356--12298505 Score: 196
Period size: 78 Copynumber: 1.9 Consensus size: 78
12298346 CCACTAGCCT
* *
12298356 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGCAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTTTAAGTCATATCTCCCCGGTCAGCAGTCA
12298421 AATAGGTGAGTCC
66 AATAGGTGAGTCC
* * * *
12298434 TATCTCCCTTGTCTGTAGTGGATTAGGTTAAAGATTGTGT-A-TCCTATCTCCCCGGTCAGCAGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATT-T-TAAGTCATATCTCCCCGGTCAGCAGT
**
12298497 GTAATAGGT
64 CAAATAGGT
12298506 TGAAGATTGT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
78 59 0.95
79 2 0.03
80 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTTTAAGTCATATCTCCCCGGTCAGCAGTCA
AATAGGTGAGTCC
Found at i:12298549 original size:44 final size:44
Alignment explanation
Indices: 12298457--12298580 Score: 108
Period size: 44 Copynumber: 2.8 Consensus size: 44
12298447 TGTAGTGGAT
* * ** ** *
12298457 TAGGTTAAAGATTGTGTATCCTATCTCCC-CGGTCAGCAGTGTAA
1 TAGGTTGAAGATTGTGAATCCTATCTCCCTAAG-CAGCAACGGAA
*
12298501 TAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAACGGAG
1 TAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAACGGAA
* ** *
12298545 TAGGTTGAAAATT-ACAGATCTTATCTCCCTAAGCAG
1 TAGGTTGAAGATTGTGA-ATCCTATCTCCCTAAGCAG
12298581 TAGTAGAGCA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 1 0.02
44 64 0.97
45 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (44 bp):
TAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAACGGAA
Found at i:12298882 original size:44 final size:44
Alignment explanation
Indices: 12298815--12301517 Score: 932
Period size: 44 Copynumber: 65.1 Consensus size: 44
12298805 NNNNNNNNNN
* *
12298815 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* *
12298859 TATCTCCCTGGTCAACAGCGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
*
12298893 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * ** *
12298937 TATCTCCCTGAG-CAGCAGGGGAGA-AGGTTGAAAATT-ACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGA-ATAGGTTGAAGATTGTGA-ATCC
* * * * ** * * * ** * * *
12298981 TATCTCCTTAAG-CAGTAGTAGAGCAGATCGAATACGGCGATTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * * **** *
12299025 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT--AGCC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTGAATCC
* * *
12299068 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-TTAAGTCA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
*
12299113 TATCTCCCTGGTCTGCAGT-GAA-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * *
12299147 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * *
12299191 TATCTCCCTGGTCAGCAGCGTAATAGGTTGAAGATTGGGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12299235 TATCTCCCTCAG-CAGCAGTGGAGTAGGTTGAAAATTAT-AGATCC
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTGA-ATCC
* ** * * * * * *
12299279 TATCTCCCTAAG-CAGCAGTGGAGCAGATCGAAGATGGCGATTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
** * * * * **** *
12299323 TATCTTTCCAAGGT-AGTAG-GCAAGCAGATAT-AAGCCACT--AGCC
1 TATC--TCCCTGGTCAGCAGTGGAA-TAGGT-TGAAGATTGTGAATCC
* * *
12299366 TTATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGT-AAGTCG
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
* * * * *
12299411 AATCTCACC-GATCAGCAGTGGAATATGTTGACGATTGTGAGTCC
1 TATCTC-CCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * *
12299455 TATCTCCCTGGTCAACATTGGAATAGGTTGAAGATTGT-ACGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA-ATCC
* * *
12299499 AATCTCCTTGGTCTGCAGTGGAATAGG-TG-A-A---T---T-C
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* *
12299533 TATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * *
12299577 TATCTCCCTAGTCAGCAATAGAATAGGTTGAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * *
12299621 TATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAAAATTAT-AGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTGA-ATCC
** * ** * ** * **
12299665 TATCTCCCAAAG-CAGTAGTGGAGCAGATTGAAGACGGCGAATGT
1 TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * * * * *
12299709 TATCTTCCCAAGGT-AGTAG-AGAAGAAGATTTAAGCCACT-CG---CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAG--ATTGTGAATCC
12299752 TTATCTCCCTGGTCAGCAGT-GAA-A---T--AG---GTGAATCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12299787 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * *
12299831 TATCTCTCTGGTCAGTAGTGTAATAGATT-ATAGATTGTAAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGA-AGATTGTGAATCC
* * * ***
12299875 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTTAAAATAACAGATAT--
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGAT-TGTGA-ATCC
* * * * * ** * * ** * * *
12299919 TAACTCTCTAAGT-AGTAGTAGAGCAGATCGAAGACAGCGACTCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* ** * * * * **** *
12299963 TATAGTCCCAAG-CTGGTAG-GGAAGCAGATTTG-AGCCACT--AGCC
1 TAT-CTCCCTGGTC-AGCAGTGGAA-TAG-GTTGAAGATTGTGAATCC
* * * * *
12300006 TTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTAT-AAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
* *
12300051 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * **
12300095 TATCTCCCTCGTCAACAGT----T-GACT--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * *
12300129 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCT-AAGCCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
*
12300173 TATCTCCCTGCTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * * *
12300207 TATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12300251 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGCCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
*
12300295 TATCTCCCTGCTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * * *
12300329 TATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12300373 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGCCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
*
12300417 TATCTCCCTGCTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * * *
12300451 TATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12300495 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGCCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
*
12300539 TATCTCCCTGCTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * * *
12300573 TATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12300617 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGCCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
*
12300661 TATCTCCCTGCTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * * *
12300695 TATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12300739 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGCCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
*
12300783 TATCTCCCTGCTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * * *
12300817 TATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12300861 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGCCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
*
12300905 TATCTCCCTGCTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * * *
12300939 TATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12300983 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGCCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
*
12301027 TATCTCCCTGCTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * * *
12301061 TATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12301105 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGCCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
*
12301149 TATCTCCCTGCTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * * *
12301183 TATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12301227 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGCCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
*
12301271 TATCTCCCTGCTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * * *
12301305 TATATCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12301349 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGCCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
12301393 TATCTCCCTGGTCAGCAGTGG-A-A---T--AG---GTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * *
12301427 TATATCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTCAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
* * * *
12301471 TATCTCCCTCGTCAGCAATGAAATAGGTTGAAGGTTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
12301515 TAT
1 TAT
12301518 GTTCCAGAGC
Statistics
Matches: 1958, Mismatches: 447, Indels: 508
0.67 0.15 0.17
Matches are distributed among these distances:
32 1 0.00
34 337 0.17
35 48 0.02
36 17 0.01
37 29 0.01
38 3 0.00
39 31 0.02
40 2 0.00
41 31 0.02
42 32 0.02
43 95 0.05
44 1240 0.63
45 81 0.04
46 9 0.00
47 2 0.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCC
Found at i:12298897 original size:34 final size:34
Alignment explanation
Indices: 12298851--12298920 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
12298841 GTTGAAGATT
*
12298851 GTGAATCGTATCTCCCTGGTCAACAGCGGAATAG
1 GTGAATCCTATCTCCCTGGTCAACAGCGGAATAG
* *
12298885 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAG
1 GTGAATCCTATCTCCCTGGTCAACAGCGGAATAG
12298919 GT
1 GT
12298921 TGAAGATTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (34 bp):
GTGAATCCTATCTCCCTGGTCAACAGCGGAATAG
Found at i:12299198 original size:78 final size:78
Alignment explanation
Indices: 12299069--12299218 Score: 230
Period size: 78 Copynumber: 1.9 Consensus size: 78
12299059 CCACTAGCCT
* * *
12299069 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTGAAGTCATATCTCCCTGGTCAGCAGCGA
12299134 AATAGGTGAATCC
66 AATAGGTGAATCC
* *
12299147 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-TGAAGTCATATCTCCCTGGTCAGCAGCG
*
12299211 TAATAGGT
65 AAATAGGT
12299219 TGAAGATTGG
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
78 62 0.95
79 3 0.05
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTGAAGTCATATCTCCCTGGTCAGCAGCGA
AATAGGTGAATCC
Found at i:12299527 original size:386 final size:385
Alignment explanation
Indices: 12299069--12299783 Score: 1085
Period size: 386 Copynumber: 1.9 Consensus size: 385
12299059 CCACTAGCCT
** *
12299069 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCTGCAGTGA
** *
12299134 AATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
66 AATAGGTGAATCCTATCTCCCAGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
* *
12299199 TGGTCAGC-AGCGTAATAGGTTGAAGATTGGGAATCCTATCTCCCTCAGCAGCAGTGGAGTAGGT
131 TAGTCAGCAAGAG-AATAGGTTGAAGATTGGGAATCCTATCTCCCTCAGCAGCAGTGGAGTAGGT
* * *
12299263 TGAAAATTATAGATCCTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGGCGATTCTTATCT
195 TGAAAATTATAGATCCTATCTCCCAAAGCAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
* * * *
12299328 TTCCAAGGTAGTAG-GCAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATA
260 TCCCAAGGTAGTAGAG-AAGAAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGCAGTGAAATA
12299392 GGCTGAAGATTGTAAGTCGAATCTCACCGATCAGCAGTGGAATATGTTGACGATTGTGAGTCC
324 GG-TGAAGATTGTAAGTCGAATCTCACCGATCAGCAGTGGAATATGTTGACGATTGTGAGTCC
* * *
12299455 TATCTCCCTGGTCAACATTGGAATAGGTTGAAGATTGTACGTCCA-ATCTCCTTGGTCTGCAGTG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGT-CATATCTCCCTGGTCTGCAGTG
* * * *
12299519 GAATAGGTGAATTCTATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
65 AAATAGGTGAATCCTATCTCCCAGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCC
* * * *
12299584 CTAGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGT
130 CTAGTCAGCAAGAGAATAGGTTGAAGATTGGGAATCCTATCTCCCTCAGCAGCAGTGGAGTAGGT
* * * *
12299649 TGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATTGAAGACGGCGAATGTTATCT
195 TGAAAATTATAGATCCTATCTCCCAAAGCAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
* *
12299714 TCCCAAGGTAGTAGAGAAGAAGATTTAAGCCACTCGCCTTATCTCCCTGGTCAGCAGTGAAATAG
260 TCCCAAGGTAGTAGAGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGCAGTGAAATAG
12299779 GTGAA
325 GTGAA
12299784 TCCTATCTCT
Statistics
Matches: 294, Mismatches: 32, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
385 4 0.01
386 285 0.97
387 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (385 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCTGCAGTGA
AATAGGTGAATCCTATCTCCCAGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
TAGTCAGCAAGAGAATAGGTTGAAGATTGGGAATCCTATCTCCCTCAGCAGCAGTGGAGTAGGTT
GAAAATTATAGATCCTATCTCCCAAAGCAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTT
CCCAAGGTAGTAGAGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGCAGTGAAATAGG
TGAAGATTGTAAGTCGAATCTCACCGATCAGCAGTGGAATATGTTGACGATTGTGAGTCC
Found at i:12299538 original size:298 final size:289
Alignment explanation
Indices: 12298930--12299586 Score: 725
Period size: 298 Copynumber: 2.2 Consensus size: 289
12298920 TTGAAGATTC
* * * * * * *
12298930 TGAATCCTATCTCCCTGAGCAGCAGGGGAGAAGGTTGAAAATTACAGATCTTATCTCCTTAAGCA
1 TGAATTCTATCTCCCTCAGCAGCAGTGGAGTAGGTTGAAAATTATAGATCCTATCTCCCTAAGCA
* * * *
12298995 GTAGTAGAGCAGATCGAATACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGC
66 GCAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGCAAGAAGATATAAGC
* * *
12299060 CACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGT
131 CACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTCATATCTCCCTGAT
* * **
12299125 CTGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATC
196 CAGCAGTGAAATAGGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTATGAATC
* *
12299190 CTATCTCCCTGGTCAGCAGCGTAATAGGT
261 CAATCTCCCTGGTCAGCAGCGGAATAGGT
12299219 TGAAGATTGGGAATCCTATCTCCCTCAGCAGCAGTGGAGTAGGTTGAAAATTATAGATCCTATCT
1 TG-A-A-T-----T-CTATCTCCCTCAGCAGCAGTGGAGTAGGTTGAAAATTATAGATCCTATCT
* * * *
12299284 CCCTAAGCAGCAGTGGAGCAGATCGAAGATGGCGATTCTTATCTTTCCAAGGTAGTAGGCAAGCA
57 CCCTAAGCAGCAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGCAAGAA
12299349 GATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTCGA-A
122 GATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTC-ATA
* *
12299413 TCTCACC-GATCAGCAGTGGAATATGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACATTGGA
186 TCTC-CCTGATCAGCAGT-GAA-A---T-A-G---GTGAATCCTATCTCCCTGGTCAACAGTGGA
* * * * *
12299477 ATAGGTTGAAGATTGT-ACGTCCAATCTCCTTGGTCTGCAGTGGAATAGG-
240 ATAGGTTGAAGATTATGA-ATCCAATCTCCCTGGTCAGCAGCGGAATAGGT
* * * *
12299526 TGAATTCTATCT-CC-CAGGTTAGCAGTGGAATAGGTTGAAGATTGT-GAATCCTATCTCCCTA
1 TGAATTCTATCTCCCTCA-G-CAGCAGTGGAGTAGGTTGAAAATTATAG-ATCCTATCTCCCTA
12299587 GTCAGCAATA
Statistics
Matches: 308, Mismatches: 35, Indels: 41
0.80 0.09 0.11
Matches are distributed among these distances:
289 2 0.01
290 1 0.00
291 1 0.00
292 1 0.00
296 2 0.01
297 4 0.01
298 215 0.70
299 7 0.02
300 1 0.00
303 1 0.00
304 2 0.01
305 2 0.01
306 1 0.00
307 3 0.01
308 65 0.21
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (289 bp):
TGAATTCTATCTCCCTCAGCAGCAGTGGAGTAGGTTGAAAATTATAGATCCTATCTCCCTAAGCA
GCAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGCAAGAAGATATAAGC
CACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTCATATCTCCCTGAT
CAGCAGTGAAATAGGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTATGAATC
CAATCTCCCTGGTCAGCAGCGGAATAGGT
Found at i:12299601 original size:78 final size:78
Alignment explanation
Indices: 12299454--12299604 Score: 187
Period size: 78 Copynumber: 1.9 Consensus size: 78
12299444 ATTGTGAGTC
* * * * * * * *
12299454 CTATCTCCCTGGTCAACATTGGAATAGGTTGAAGATTGTACGTCCAATCTCCTTGGTCTGCAGTG
1 CTATCTCCCAGGTCAACAGTGGAATAGGTTGAAGATTGTACATCCAATCTCCCTAGTCAGCAATA
12299519 GAATAGGTGAATT
66 GAATAGGTGAATT
* * *
12299532 CTATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGA-ATCCTATCTCCCTAGTCAGCAAT
1 CTATCTCCCAGGTCAACAGTGGAATAGGTTGAAGATTGT-ACATCCAATCTCCCTAGTCAGCAAT
12299596 AGAATAGGT
65 AGAATAGGT
12299605 TGAAGATTGT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
78 60 0.98
79 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (78 bp):
CTATCTCCCAGGTCAACAGTGGAATAGGTTGAAGATTGTACATCCAATCTCCCTAGTCAGCAATA
GAATAGGTGAATT
Found at i:12299641 original size:122 final size:122
Alignment explanation
Indices: 12299424--12299648 Score: 301
Period size: 122 Copynumber: 1.8 Consensus size: 122
12299414 CTCACCGATC
* * * * * *
12299424 AGCAGTGGAATATGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACATTGGAATAGGTTGAAGA
1 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAACAATAGAATAGGTTGAAGA
* * *
12299489 TTGTACGTCCAATCTCCTTGGTCTGCAGTGGAATAGGTGAATTCTATCTCCCAGGTT
66 TTGTACATCCAATCTCCCTGGTCAGCAGTGGAATAGGTGAATTCTATCTCCCAGGTT
*
12299546 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAATAGAATAGGTTGAAGA
1 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAACAATAGAATAGGTTGAAGA
* * *
12299611 TTGTGA-ATCCTATCTCCCTGAG-CAGTAGTGGAGTAGGT
66 TTGT-ACATCCAATCTCCCTG-GTCAGCAGTGGAATAGGT
12299649 TGAAAATTAT
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
122 86 0.98
123 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (122 bp):
AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAACAATAGAATAGGTTGAAGA
TTGTACATCCAATCTCCCTGGTCAGCAGTGGAATAGGTGAATTCTATCTCCCAGGTT
Found at i:12299801 original size:34 final size:35
Alignment explanation
Indices: 12299753--12299819 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
12299743 CCACTCGCCT
12299753 TATCTCCCTGGTCAGCAGTGAAATAGG-TGAATCC
1 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAATCC
* * * *
12299787 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAAT
1 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAAT
12299820 ATTGTGAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 23 0.82
35 5 0.18
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (35 bp):
TATCTCCCTGGTCAGCAGTGAAATAGGTTGAATCC
Found at i:12299836 original size:254 final size:254
Alignment explanation
Indices: 12299500--12300108 Score: 691
Period size: 254 Copynumber: 2.4 Consensus size: 254
12299490 TGTACGTCCA
* * * * *
12299500 ATCTCCTTGGTCTGCAGTGGAATAGGTGAATTCTATCTCCCAGGTTAGCAGTGGAATAGGTTGAA
1 ATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCAGGTCAGCAGTGGAATAGGTTGAA
* *
12299565 GATTGTGAATCCTATCTCCCTAGTCAGCAATAG-AATAGGTTGA-AGATTGTGAATCCTATCTCC
66 GATTGTGAATCCTATCTCCCTAGTCAGCAAT-GTAATAGATT-ATAGATTGTAAATCCTATCTCC
* * * * * *
12299628 CTGAGCAGTAGTGGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGAT
129 CTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGATATTAACTCCCAAAGCAGTAGTAGAGCAGAT
* * * ** * *
12299693 TGAAGACGGCGAATGTTATCTTCCCAAGGTAGTAGAGAAGAAGATTTAAGCCACTCGCCTT
194 CGAAGACAGCGAATCTTATAGTCCCAAGCTAGTAGAGAAGAAGATTTAAGCCACTAGCCTT
* ** *
12299754 ATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTATCTCTCTTGTCAGTAGTGGAATAGGTTGAA
1 ATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCAGGTCAGCAGTGGAATAGGTTGAA
* * * * *
12299819 TATTGTGAATCCTATCTCTCTGGTCAGTAGTGTAATAGATTATAGATTGTAAATCCTATCTCCCT
66 GATTGTGAATCCTATCTCCCTAGTCAGCAATGTAATAGATTATAGATTGTAAATCCTATCTCCCT
* * * *
12299884 GAGCAGCAGTGGAGTAGGTTTAAAATAACAGATATTAACTCTCTAAGTAGTAGTAGAGCAGATCG
131 GAGCAGCAGTGGAGTAGGTTGAAAATAACAGATATTAACTCCCAAAGCAGTAGTAGAGCAGATCG
* * * * *
12299949 AAGACAGCGACTCTTATAGTCCCAAGCTGGTAGGGAAGCAGATTTGAGCCACTAGCCTT
196 AAGACAGCGAATCTTATAGTCCCAAGCTAGTAGAGAAGAAGATTTAAGCCACTAGCCTT
* * * *
12300008 ATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGTGGA
1 ATCTCCCTGGTCAGCAGT-GAA-A---T--AGG-T-GAA-TCCTATCTCCCAGGTCAGCAGTGGA
* * *
12300073 ATAGGTTGAAGATTGTGAGTCTTATCTCCCTCGTCA
56 ATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCA
12300109 ACAGTTGACT
Statistics
Matches: 294, Mismatches: 49, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
253 2 0.01
254 228 0.78
255 3 0.01
256 1 0.00
259 1 0.00
261 3 0.01
262 1 0.00
263 2 0.01
264 53 0.18
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (254 bp):
ATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCAGGTCAGCAGTGGAATAGGTTGAA
GATTGTGAATCCTATCTCCCTAGTCAGCAATGTAATAGATTATAGATTGTAAATCCTATCTCCCT
GAGCAGCAGTGGAGTAGGTTGAAAATAACAGATATTAACTCCCAAAGCAGTAGTAGAGCAGATCG
AAGACAGCGAATCTTATAGTCCCAAGCTAGTAGAGAAGAAGATTTAAGCCACTAGCCTT
Found at i:12301531 original size:44 final size:44
Alignment explanation
Indices: 12301422--12301546 Score: 135
Period size: 44 Copynumber: 2.8 Consensus size: 44
12301412 GGAATAGGTG
* * *
12301422 AATCCTATATCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTC
1 AATCCTATCTCCCTAGGCAGCAATGGAATAGGTTGAAGATTGTC
* * * * *
12301466 AATCCTATCTCCCTCGTCAGCAATGAAATAGGTTGAAGGTTGTG
1 AATCCTATCTCCCTAGGCAGCAATGGAATAGGTTGAAGATTGTC
* * *
12301510 AATCCTATGTTCC-AGAGCAGCAATGGAGTAGGTTGAA
1 AATCCTATCTCCCTAG-GCAGCAATGGAATAGGTTGAA
12301547 AATTAGAGAT
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
43 1 0.01
44 67 0.99
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (44 bp):
AATCCTATCTCCCTAGGCAGCAATGGAATAGGTTGAAGATTGTC
Found at i:12301542 original size:122 final size:122
Alignment explanation
Indices: 12300129--12301503 Score: 2615
Period size: 122 Copynumber: 11.3 Consensus size: 122
12300119 AGGTGAATCC
* **
12300129 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
1 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
12300194 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
66 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
12300251 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
1 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
12300316 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
66 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
12300373 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
1 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
12300438 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
66 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
12300495 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
1 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
12300560 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
66 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
12300617 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
1 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
12300682 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
66 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
12300739 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
1 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
12300804 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
66 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
12300861 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
1 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
12300926 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
66 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
12300983 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
1 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
12301048 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
66 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
12301105 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
1 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
12301170 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
66 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
12301227 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
1 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
*
12301292 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCT
66 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
*
12301349 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
* * * * *
12301414 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTCAATCC
66 AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
* * * * *
12301471 TATCTCCCTCGTCAGCAATGAAATAGGTTGAAG
1 TATCTCACTGGTCAACAGTGGAATAGGTTGAAG
12301504 GTTGTGAATC
Statistics
Matches: 1239, Mismatches: 14, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 1239 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (122 bp):
TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGCTCAGCAGTGG
AATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
Found at i:12301788 original size:78 final size:78
Alignment explanation
Indices: 12301641--12301790 Score: 178
Period size: 78 Copynumber: 1.9 Consensus size: 78
12301631 CCACTAGTCT
* * *
12301641 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTTTAAGTCATATCTCTCGGGTCAGTAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTTTAAGTCATATCTCCCCGGTCAGCAGTCA
12301706 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * *
12301719 TATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGT-A-TCCTATCTCCCCGGTCAGCAGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATT-T-TAAGTCATATCTCCCCGGTCAGCAGT
**
12301782 GTAATAGGT
64 CAAATAGGT
12301791 TGAAGATTGT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
78 57 0.95
79 2 0.03
80 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTTTAAGTCATATCTCCCCGGTCAGCAGTCA
AATAGGTGAATCC
Found at i:12301823 original size:44 final size:45
Alignment explanation
Indices: 12301711--12301861 Score: 148
Period size: 44 Copynumber: 3.4 Consensus size: 45
12301701 AGTCAAATAG
* * * *
12301711 GTGAATCCTATCTCCCT-TGTCTGTAGTGGATTAGGTTGAAGATT
1 GTGAATCCTATCTCCCTAAGTCAGCAGTGGAATAGGTTGAAGATT
* ** *
12301755 GTGTATCCTATCTCCC-CGGTCAGCAGTGTAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTAAGTCAGCAGTGGAATAGGTTGAAGATT
* * *
12301799 GTGAATCCTATCTCCCTAAG-CAGCAATGGAGTAGGTTGAAAATT
1 GTGAATCCTATCTCCCTAAGTCAGCAGTGGAATAGGTTGAAGATT
* *
12301843 AT-AGATCTTATCTCCCTAA
1 GTGA-ATCCTATCTCCCTAA
12301862 ATAGTAGTAG
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
43 1 0.01
44 87 0.98
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (45 bp):
GTGAATCCTATCTCCCTAAGTCAGCAGTGGAATAGGTTGAAGATT
Found at i:12302031 original size:44 final size:44
Alignment explanation
Indices: 12301939--12302054 Score: 126
Period size: 44 Copynumber: 2.6 Consensus size: 44
12301929 CCACTAGCCT
* * * * *
12301939 TATCTCCTTGGTCAGTAATAGAACAGGTTGAAGCTTATAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAACAGGTTGAAGATTATAAGACC
* * *
12301983 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-GGACC
1 TATCTCCCTGGTCAGTAGTGGAACAGGTTGAAGATTATAAGACC
* *
12302026 GTATCTCCCTGGTCAATAGCGGAACAGGT
1 -TATCTCCCTGGTCAGTAGTGGAACAGGT
12302055 GAATCCTATC
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 3 0.05
44 57 0.95
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGTCAGTAGTGGAACAGGTTGAAGATTATAAGACC
Found at i:12302063 original size:298 final size:290
Alignment explanation
Indices: 12301443--12302111 Score: 673
Period size: 298 Copynumber: 2.3 Consensus size: 290
12301433 CCTAGTCAGC
* * * * * *
12301443 AGTGGAATAGGTTGAAGATTGTCAATCCTATCTCCCTCGTCAGCAATGAAATAGGTTGAAGGTTG
1 AGTGCAATAGG-TGAACATGGTGAATCCTATCTCCC-CGTCAGCAGTGAAATAGGTTGAAGATTG
* * *
12301508 TGAATCCTATGTTCCAGAGCAGCAATGGAGTAGGTTGAAAATTAGAGATCCTATCTCTCAAAGCA
64 TGAATCCTATCTCCCAGAGCAGCAATGGAGTAGGTTGAAAATTAGAGATCCTATCTCTAAAAGCA
* * *
12301573 GAGCAGATCGAAGACGGCGAATCTTACCTTCCCAATGTATTAGGGAAGAAGATTTAAGCCACTAG
129 GAGCAGATCAAAGACGGCGAATCTTACATTCCCAATGTAGTAGGGAAGAAGATTTAAGCCACTAG
* * * * * *
12301638 TCTTATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTTTAAGTCATATCTCTCGGGTCAGTAG
194 CCTTATCTCCCTGGTCAGTAATAGAACAGGTTAAAGATTATAAGTCATATCTCCCGGGTCAGTAG
** * * **
12301703 TCAAATAGGTGAATCCTATCTCCCTTGTCTGT
259 TCAAATAGGTGAAGACTATCACCCTTCTCCCT
* * * * * *
12301735 AGTGGATTAGGTTGAAGATTGTGTATCCTATCTCCCCGGTCAGCAGTGTAATAGGTTGAAGATTG
1 AGTGCAATAGG-TGAACATGGTGAATCCTATCTCCCC-GTCAGCAGTGAAATAGGTTGAAGATTG
* *
12301800 TGAATCCTATCTCCCTA-AGCAGCAATGGAGTAGGTTGAAAATTATAGATCTTATCTCCCTAAAT
64 TGAATCCTATCTCCC-AGAGCAGCAATGGAGTAGGTTGAAAATTAGAGATCCTATCT--CT-AA-
* * * * * *
12301864 AGTAGTAGAGCAGATCAAAGACGGCGATTCTTATATTCCCAA-GCTGGTAGGGAAGCAGATTTGA
124 A--AGCAGAGCAGATCAAAGACGGCGAATCTTACATTCCCAATG-TAGTAGGGAAGAAGATTTAA
* * * * *
12301928 GCCACTAGCCTTATCTCCTTGGTCAGTAATAGAACAGGTTGAAGCTTATAAGTCCTATCTCCCTG
186 GCCACTAGCCTTATCTCCCTGGTCAGTAATAGAACAGGTTAAAGATTATAAGTCATATCTCCCGG
** * * * *
12301993 GTCAGTAGTGGAATAGGTTGAAGATTGTGGACCGTATCTCCCT
251 GTCAGTAGTCAAATAGG-TGAAGACTAT-CACCCT-TCTCCCT
* * * *
12302036 GGT-CAATAGCG-GAACA-GGTGAATCCTATCTCCCTTGTCAGCAGTGGAATAGGTTGAAGATTC
1 AGTGCAATAG-GTGAACATGGTGAATCCTATCTCCC-CGTCAGCAGTGAAATAGGTTGAAGATTG
12302098 TGAATCCTATCTCC
64 TGAATCCTATCTCC
12302112 NNNNNNNNNN
Statistics
Matches: 311, Mismatches: 52, Indels: 22
0.81 0.14 0.06
Matches are distributed among these distances:
291 1 0.00
292 107 0.34
293 1 0.00
294 2 0.01
295 1 0.00
296 1 0.00
297 1 0.00
298 173 0.56
299 10 0.03
300 7 0.02
301 7 0.02
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (290 bp):
AGTGCAATAGGTGAACATGGTGAATCCTATCTCCCCGTCAGCAGTGAAATAGGTTGAAGATTGTG
AATCCTATCTCCCAGAGCAGCAATGGAGTAGGTTGAAAATTAGAGATCCTATCTCTAAAAGCAGA
GCAGATCAAAGACGGCGAATCTTACATTCCCAATGTAGTAGGGAAGAAGATTTAAGCCACTAGCC
TTATCTCCCTGGTCAGTAATAGAACAGGTTAAAGATTATAAGTCATATCTCCCGGGTCAGTAGTC
AAATAGGTGAAGACTATCACCCTTCTCCCT
Found at i:12311271 original size:44 final size:44
Alignment explanation
Indices: 12311219--12318588 Score: 1874
Period size: 44 Copynumber: 171.7 Consensus size: 44
12311209 AGCCACTCGC
12311219 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12311263 CATATCTCCCTGGTCAGCAAT-GAA-A---T--AG-GTG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* *
12311297 CCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12311341 CATATCTCCCTGGTCAGCAAT-GAA-A---T--AG-GTG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* *
12311375 CCTATCTCCCTGATCAGTAGTGGAATAGGTTGAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * *
12311419 CCTATCTCCCTAAG-CAGTAGTGCAGA-AGGTTGAA-AAT-TACAGAT
1 CTTATCTCCCT-GGTCAGTAGTGGA-ATAGGTTGAAGATTGTA-AG-T
* * ** * * * *
12311463 CTTATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGA-CG-ACGATT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTA--AGT
* * * * **** *
12311507 CTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AGC
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
* * *
12311551 CTTATCTCCCTTGTCAATAGTGGAATAGGTTGAAGATTATAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12311595 CTTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* **
12311639 CCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12311683 CTTATCTCCCTAGTCAGCAGCGGAATA----G--G--TG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
** * *
12311717 CCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAACATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * *
12311761 CCTATCACCCTGGTCAGGAATGGAATAGGTTGAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * *
12311805 CCTATGAT-CCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGAT
1 CTTAT-CTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-T
** * * * ** *
12311849 CTTATCTCCCAAAG-CAGTAGTGGAACA-GATGAATACGGCGAA-T
1 CTTATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGT
* * * ** **** *
12311892 CTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTCAGCCACT-AGC
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
* *
12311936 CTTATCTCCTTGGTTAGTAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * * *
12311980 CCTATCTCCCTAGTCAGCAGTGGAATACGTTGAAGATTCTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* ** *
12312024 CCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12312068 CCTGTCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* *
12312102 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * *
12312146 CCTATCTCCCTGGTCAGCAATGAAATAGGTTGAAGGTTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * * *
12312190 CCTATGTTCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TAGAGAT
1 CTTATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-T
* *** ** * * ** *
12312234 CTTATCACTCAAAG-CAGTAGTGGAGCAGATCGAAGACGGCGAA-T
1 CTTATCTC-CCTGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGT
* * * * * **** *
12312278 GTTACCTTCCCAAT-GT-AGTAG-GGAAGAAGATTTAAGCCACT-AGC
1 CTTATC-TCCC--TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
*
12312322 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * * *
12312366 CATATCTCTCGGGTCAGCAGT-CAA-A---T--AG-GTG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * *
12312400 CCTATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGTA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* ** * *
12312444 CCTATCTCCCTGGTCAACAGTGTAATAGGTTTAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * ** * *
12312488 CCTATCTCCCTAAG-CAGCAACGGAGTAGGTTGAA-AAT-TACAGAT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-T
* * ** * * ** ** *
12312532 CTTATCTCCCTAAGT-AGTAGTAGAGCAGATCGAAGACGGCGATT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* *** * * ** * * **** *
12312576 CTTATATTCCC-AACCTGGAAAGGAAGCAGATTTG-AGCCACT-AGC
1 CTTAT-CTCCCTGGTCAGTAGTGGAA-TAG-GTTGAAGATTGTAAGT
* * * * *
12312620 CCTATCTCCTTGGTCAGTAATGGAATAGGTTGAAGGTTATAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12312664 CCTATCTGCCTGGTCAGTAGTGGAATAGGTTAAAGTTTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* ** *
12312708 CGTATCTCCCTGGTCAACAGCGGAATA----G--G--TG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12312742 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * *
12312786 CCTATCTCCCTGAGT-AGCAGGGGAGA-AGGTTGAA-AAT-TACAGAT
1 CTTATCTCCCTG-GTCAGTAGTGGA-ATAGGTTGAAGATTGTA-AG-T
* * ** * * ** ** *
12312830 CTTATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * * **** *
12312874 GTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AGC
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
* *
12312918 CTTATCTCCGTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12312962 CATATCTCCCTGGTCTGCAGT-GAA-A---T--AG-GTG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12312996 CCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * *
12313040 CCTATCTCCCTGGTCAGCAGCGTAATAGGTTGAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * * *
12313084 CGTATCACCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTAT-AGAT
1 CTTATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAG-T
* * * ** * * * * ** *
12313128 CCTATCTCCCTAAG-CAGCAGTGGAGCAGATCGAATATGGCGATT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
** * * * * **** *
12313172 CTTATCTTTCCAAGGT-AGTAG-GCAAGCAGATAT-ATGCCACT-AGC
1 CTTATC--TCCCTGGTCAGTAGTGGAA-TAGGT-TGAAGATTGTAAGT
* *
12313216 CTTATCTCCCTGGTCAGTAGTAGAATAGGCTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
** * * *
12313260 CGAATCT-CCTCGGTCAGCAGTGGAATAGGTTGACGATTGTGAGT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* ** * **
12313304 CCTATCTCCCTGGTCAACAGTGGAATAGATTGAAGATTGTCTGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
** * * * *
12313348 CCAATCTCCTTGGTCTGCAGTGCAATAGG-TG-A-A---T---T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12313383 C-TATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * *
12313426 CCTATCTCCCTGGTTAGCAATAGAATAGGTTGACA-ATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGA-AGATTGT-AAGT
* * *
12313470 CCTATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TACAGAT
1 CTTATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-T
** * ** * * *
12313514 CTTATCTCCCAAAG-CAGTAGTAGAGCAGATCGAAGA-GGTCGAA-T
1 CTTATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTGT--AAGT
* * * * * **** *
12313558 CTTATCTTCCCAAGAT-AGTAG-GGAAGAAGATTTAAGCCACT-AGC
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
*
12313602 CTTATCTCCCTGGTCAGTAGTGGAATGGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * *
12313646 -TCTATCTCCCTAGTCAGCAGGGGAATAGGTTGACGATTGTGAGT
1 CT-TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * **
12313690 CCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
** ** *
12313734 CAAATCTCGTTGGTCAGCAGTGGAATA----G--G--TG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * *
12313768 CCTATCTCCCTAGTTAGCAGTGGAATAGGTTGAATATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * *
12313812 CCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * ** * * * * *
12313856 CCTATCTCCTTGACCAGCAGTGGAGTAGGTTGAAAAATAT-AGAT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-T
** ** * ** *
12313900 CTTATCTCCCAAAG-CAGTAGTGGAGCAGATTGAAGACGGCGAA-T
1 CTTATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGT
* * * * * **** * *
12313944 GTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-CGC
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
*
12313988 CTTATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12314032 CATATCTCCCTTGTCAGCAGT-GAA-A---T--AG-GTG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12314066 CCTATCTCCCTTGTCAGTAGTTGAATAGGTTGAATATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * ** * * *
12314110 CCTATCTCCTTGACCAGCAGTGGAGTAGGTTGAA-AAT-TACAGAT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-T
* * * * * ** * * ** ** *
12314154 ATTAACTCTCTAAGT-AGTAGTAGAGCAGATCGAAGACAGCGATT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* ** * * * * *
12314198 CTTATATTCCCAAG-CTGGTAG-GGAAGCAGATTTG-AGCACCTG---GC
1 CTTAT-CTCCCTGGTC-AGTAGTGGAA-TAG-GTTGAAG-A-TTGTAAGT
* * * *
12314242 CTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12314286 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
** *
12314330 CTTATCTCCCTGGTCAACAGTTGAATA----G--G--TG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
*
12314364 CCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * *
12314408 CCTATCTCCCT-GTGCAGCAGTGGAGA-AGGTTGAA-AAT-TACAGAT
1 CTTATCTCCCTGGT-CAGTAGTGGA-ATAGGTTGAAGATTGTA-AG-T
* * ** * * ** ** *
12314452 CTTATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * ** **** *
12314496 CTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTCAGCCACT-AGC
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
* * *
12314540 CTTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12314584 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12314628 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12314672 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12314716 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12314760 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12314804 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12314848 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12314892 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12314936 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12314980 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12315024 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12315068 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12315112 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12315156 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGGTTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * *
12315200 CCTATGAT-CCTGAG-CAGTAGTGGAGTAGGTTGAACA-T-TACAGAT
1 CTTAT-CTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-T
** * * * *
12315244 CTTATCTCCCAAAG-CAGTAGTGGAACA-GATGAAG-TCGGCGAA-T
1 CTTATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGAT-TG-TAAGT
* * * ** ****
12315287 CTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTCAGCCACT-AGT
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
12315331 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * *
12315375 CCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
** * *
12315419 -TCTATCTCCCTGGTCAACAGTGGAATAGATTGAAGATTCTAAGT
1 CT-TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * *
12315463 CCTATCTCTCTGGTCAGCAATGAAATAGG-T---GA----AA--
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12315497 CCTATCTCCCAGATCAGTAGTGGAATAGGTTGAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * *
12315541 CATATCTCCCTGGTCAGCAATGGAATAGGTTGAAGGTTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * * *
12315585 CCTATGTTCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TAGAGAT
1 CTTATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-T
*** * ** * * ** *
12315629 CTTATCTCTCAAAG-CAGTAGTAGACCAGATCGAAGACGGCGAA-T
1 CTTATCTC-CCTGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGT
* * * * **** *
12315673 CTTACCTTCCCAAGGT-AGTAGGGAAGAATA--TTTAAGCCACT-AGC
1 CTTATC-TCCC-TGGTCAGTAGTG--GAATAGGTTGAAGATTGTAAGT
* * * *
12315717 CTTATCTCCCTAGTCAGTACTGGAATAGGTTGAAGATTTTAAAT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * ** * *
12315761 -TATGTCTCCCGGGTCAGCGGT-CAA-A---T--AG-GTG-AA-T
1 CT-TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12315795 CCTATCTCCCTTGTCTGTAGTGGAATAGGTTGAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
** * *
12315839 CCCATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
** * * *
12315883 CCCATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTATGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * *
12315927 CCTATCTCCCTTGTCTGTAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12315971 CCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12316015 CCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12316059 CCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12316103 CCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12316147 CCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12316191 CCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTTTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12316235 CATATCTCCCTAGTCTGCAGT-GAA-A---T-AAG--TG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12316269 CTTATCTCCCTTGTCAGTAGTGTAATAGGATGAAGATTATGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * *
12316313 CCTATCTCCCTTGTCTGTAGTGGAATAGGTTGAAGATTTTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12316357 CATATCTCCCTAGTCTGCAGT-GAA-A---T-AAG--TG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12316391 CTTATCTCCCTTGTCAGTAGTGTAATAGGTTGAAGATTATGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * *
12316435 CCTATCTCCCTGGTCAGCAGCGTAATAGGTTGAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * *
12316479 CATATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTAT-AGAT
1 CTTATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAG-T
* * ** * * * ** *
12316523 CCTATCTCCCTAAGT-AGTAGTGGAGCAGATCGAAGATGGCGATT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * **** *
12316567 CTTATCTTTCCAAT-GT-AGTAG-GCAAGCAGATAT-AAGCCACT-AGC
1 CTTATC--TCC-CTGGTCAGTAGTGGAA-TAGGT-TGAAGATTGTAAGT
* * *
12316611 CTTATCTCCCTGGTCAGAAGTGGAATAGGTTAAAAATTACAG-AAG-
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT---GTAAGT
* * * * * ** *
12316656 -TTATCTCCCTAAG-CAGTAGTAGAGTAGATCGAA-AAGGCGAA-T
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGT
* * * * * **** *
12316698 CTTATATTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AGC
1 CTTAT-CTCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
* * * *
12316742 CTTATCTTCCTTGTCATTAGTGGAATAGGTTGACGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * * *
12316786 CCTATCCCCCTAGTCAGCAGTGGAATAGGCTGAAAATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * *
12316830 CCTATATCCCTGAG-CAGCAGTGGAGTAGGTTGCAA-ATTAT-AGAT
1 CTTATCTCCCTG-GTCAGTAGTGGAATAGGTTG-AAGATTGTAAG-T
* * ** * * ** * *
12316874 CTTATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGTGATT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * **** *
12316918 CTTATCTTCCCAAGGT-AGTAG-GGAAGTAGATTTAAGCCACT-AGC
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
* *
12316962 CTTATCTCCCTGGTCAGTAATGGAATAGGCTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * *
12317006 CCTATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGGTTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
** *
12317050 CTTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* *
12317094 AC-TATCTCCCTGGTCAGCAATGGAATAGG-T----A----AA-T
1 -CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12317128 CATATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * *
12317172 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGT
* * * * * * *
12317216 CCTATGTCCTTGAG-CAGCAGTGGAGTTGGTTGAA-AAT-TACAGAT
1 CTTATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-T
** * ** * * ** ** *
12317260 CTTATCTCCCAAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATT
1 CTTATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * * *** * *
12317304 CTTATGTGCCCAAGGT-AGTAG-GGAAGCAGATTTAAGACACT-GGC
1 CTTATCT-CCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
* ** ** * *
12317348 CTTATATCCCTATTCTTTAGTGGAATAGTTTGAAGATTTTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* *
12317392 CTTATCTCCCTGGTCAGTACTGGAATAGGTTGAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12317436 CATATCTCCCTGGCCAGAAGTGGAATAGCTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12317480 CTTATCTCCCTGGTCAGCAATGG-A-A----G-AG-GTG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12317514 CATATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * * *
12317558 CCTGTCTCCCTGAG-CTGTAGTGGAGTAGGTTGAAAATT-AAAGAT
1 CTTATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAG-T
* ** * * ** *
12317602 CTTATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAGACAGGGAA-T
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGA-TTGTAAGT
* * * * * **** *
12317646 ATTATCTTCCCGAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AGC
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
* * *
12317690 CTTATCTCCCTGGTCGGTAATGAAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * ** *
12317734 CCTATCTCCCTAGTCACCAGTGGACTA----G--G--TG-AA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12317768 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGATA-ATTATGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGA-AGATTGT-AAGT
** * *
12317812 CCAATCTCCCTGAG-CAGCAGTGGAGA-AGGTTGAA-AAT-TACAGAT
1 CTTATCTCCCTG-GTCAGTAGTGGA-ATAGGTTGAAGATTGTA-AG-T
* * ** * * * ** ** *
12317856 CTTATCTCCCTAAG-CAGTAGTAGAGCAGATCGAACACGGCGATT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* ** * * * **** *
12317900 CTTATATTACCAAGGT-AGTA-AGGAAGTAGATTTAAGCCACT-AGC
1 CTTAT-CT-CCCTGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
* * *
12317944 CTTATTTCACTGGTCAGTAGTGGAACAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * **
12317988 CTTATCTCCATGGTCAGCAGTGGAAT-GGATTGAAGATTGCGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGG-TTGAAGATTGTAAGT
* ** * * * *
12318032 CCTATCTCCCTCATCAATAGTGAAATAGGTTTAAAATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * * *
12318076 CCTT-GCTCTCTGAG-CAGCAGTGGAGTAGGTTAAAAATTACAG-AAG-
1 -CTTATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATT---GTAAGT
* * * * * * * **
12318121 -TTATCTCCCTAAG-CAGTACTAGAGTTGATCGAAGACGGTGAA-T
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * * **** *
12318164 CATATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AGC
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
* *
12318208 CTTATCTTCCTGGTCAGTAGTGGAATAGGTTGACGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * ** *
12318252 CCTGTCTCCCTAGTCAGCAGTGGAATAGACTGAAAATTGTGAA-T
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGT
* * * * *
12318296 CCTATATCCCTGAG-CAGCA-TGGAGTAGGTTGCAA-ATTAT-AGAT
1 CTTATCTCCCTG-GTCAGTAGTGGAATAGGTTG-AAGATTGTAAG-T
* * * ** * * ** ** *
12318339 CTTATCTCCCTAAG-CCGTAGTAGAGCAGATCGAAGACGGCGATT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
** * * **** *
12318383 CTTATCTTTCCAAGGT-AGTAG-GGAAGTAGATTTAAGCCACT-AGC
1 CTTATC--TCCCTGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGT
* * *
12318427 CTTATCTTCCTGGTTAGTAGGGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * * *
12318471 CCTATCTCCCTGGTCAGCAGTGGGATAGGTTAAAGATTGTGAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* **
12318515 CTTATCTCCCTTGTCAACAGTGGAATAGGTTGAAGATTGTAAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* * *
12318559 AC-TATCTCCCTGGTCTGCAATGGAATAGGT
1 -CTTATCTCCCTGGTCAGTAGTGGAATAGGT
12318589 GAATCATATC
Statistics
Matches: 5521, Mismatches: 1275, Indels: 1060
0.70 0.16 0.13
Matches are distributed among these distances:
33 1 0.00
34 379 0.07
35 55 0.01
36 36 0.01
37 15 0.00
38 22 0.00
39 18 0.00
40 18 0.00
41 36 0.01
42 129 0.02
43 438 0.08
44 3992 0.72
45 344 0.06
46 28 0.01
47 10 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
Found at i:12311313 original size:34 final size:34
Alignment explanation
Indices: 12311265--12311391 Score: 110
Period size: 34 Copynumber: 3.4 Consensus size: 34
12311255 TTGTAAGTCA
12311265 TATCTCCCTGGTCAGCAATGAAATAGGTGAATCC
1 TATCTCCCTGGTCAGCAATGAAATAGGTGAATCC
* * * * *
12311299 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
1 TATCTCCCTGGTCAGCAAT-GAA-A---T--AG-GTG-AA-TCC
12311343 TATCTCCCTGGTCAGCAATGAAATAGGTGAATCC
1 TATCTCCCTGGTCAGCAATGAAATAGGTGAATCC
*
12311377 TATCTCCCTGATCAG
1 TATCTCCCTGGTCAG
12311392 TAGTGGAATA
Statistics
Matches: 72, Mismatches: 11, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
34 32 0.44
35 5 0.07
36 3 0.04
37 2 0.03
39 2 0.03
41 2 0.03
42 3 0.04
43 5 0.07
44 18 0.25
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (34 bp):
TATCTCCCTGGTCAGCAATGAAATAGGTGAATCC
Found at i:12311350 original size:78 final size:78
Alignment explanation
Indices: 12311221--12311429 Score: 368
Period size: 78 Copynumber: 2.7 Consensus size: 78
12311211 CCACTCGCCT
*
12311221 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAATGA
1 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAATGA
12311286 AATAGGTGAATCC
66 AATAGGTGAATCC
12311299 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAATGA
1 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAATGA
12311364 AATAGGTGAATCC
66 AATAGGTGAATCC
*
12311377 TATCTCCC-TGATCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCT
1 TATCTCCCTTG-TCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCATATCTCCCT
12311430 AAGCAGTAGT
Statistics
Matches: 127, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
77 2 0.02
78 123 0.97
79 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (78 bp):
TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAATGA
AATAGGTGAATCC
Found at i:12311786 original size:78 final size:78
Alignment explanation
Indices: 12311642--12311790 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 78
12311632 TCTGAGTCCT
* * * *
12311642 ATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTAGTCAGCAGCGGA
1 ATCTCCCTGGTCAACAGTGGAATAGGTTGAACATTGTAAGTCCTATCACCCTAGTCAGCAACGGA
12311707 ATAGGTGAATCCG
66 ATAGGTGAATCCG
* * * *
12311720 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAACATTGTGAA-TCCTATCACCCTGGTCAGGAATGG
1 ATCTCCCTGGTCAACAGTGGAATAGGTTGAACATTGT-AAGTCCTATCACCCTAGTCAGCAACGG
12311784 AATAGGT
65 AATAGGT
12311791 TGAAGATTGT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
78 60 0.97
79 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (78 bp):
ATCTCCCTGGTCAACAGTGGAATAGGTTGAACATTGTAAGTCCTATCACCCTAGTCAGCAACGGA
ATAGGTGAATCCG
Found at i:12311854 original size:166 final size:166
Alignment explanation
Indices: 12311554--12311858 Score: 386
Period size: 166 Copynumber: 1.8 Consensus size: 166
12311544 CACTAGCCTT
* * * * * *
12311554 ATCTCCCTTGTCAATAGTGGAATAGGTTGAAGATTATAAGTCTTATCTCCCTAGTCAGCAGTGGA
1 ATCTCCCTGGTCAACAGTGGAATAGGTTGAACATTATAAGTCCTATCACCCTAGTCAGCAATGGA
* * *
12311619 ATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTC
66 ATAGGTTGAAGATTCTGAATCCTATATCCCTGGTCAACAGTGGAATAGGTTGAAGAATGTAAGTC
12311684 TTATCTCCCTAGTCAGCAGCGGAATAGGTGAATCCG
131 TTATCTCCCTAGTCAGCAGCGGAATAGGTGAATCCG
* * * *
12311720 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAACATTGTGAA-TCCTATCACCCTGGTCAGGAATGG
1 ATCTCCCTGGTCAACAGTGGAATAGGTTGAACATTAT-AAGTCCTATCACCCTAGTCAGCAATGG
* * *
12311784 AATAGGTTGAAGATTGTGAATCCTATGAT-CCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TAC
65 AATAGGTTGAAGATTCTGAATCCTAT-ATCCCTG-GTCAACAGTGGAATAGGTTGAAGAATGTA-
12311845 AGATCTTATCTCCC
127 AG-TCTTATCTCCC
12311859 AAAGCAGTAG
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
164 2 0.02
165 4 0.03
166 108 0.92
167 4 0.03
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (166 bp):
ATCTCCCTGGTCAACAGTGGAATAGGTTGAACATTATAAGTCCTATCACCCTAGTCAGCAATGGA
ATAGGTTGAAGATTCTGAATCCTATATCCCTGGTCAACAGTGGAATAGGTTGAAGAATGTAAGTC
TTATCTCCCTAGTCAGCAGCGGAATAGGTGAATCCG
Found at i:12312047 original size:385 final size:386
Alignment explanation
Indices: 12311369--12312373 Score: 1602
Period size: 385 Copynumber: 2.6 Consensus size: 386
12311359 AATGAAATAG
* * * * *
12311369 GTGAATCCTATCTCCCTGATCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTAT-CTCCCTAAG
1 GTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGAT-CCTGAG
* * * * *
12311433 CAGTAGTGCAGAAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAG
65 CAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAG
* *
12311498 ACGACGATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTT
130 ACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCT-CCTT
* * *
12311563 -GTCAATAGTGGAATAGGTTGAAGATTATAAGTCTTATCTCCCTAGTCAGCAGTGGAATAGGTTG
194 GGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTAGTCAGCAGTGGAATACGTTG
* *
12311627 AAGATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCC
259 AAGATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCC
12311692 CTAGTCAGCAGCGGAATAGGTGAATCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAACATT
324 CTAGTCAGCAGCGGAATAGGTGAATCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAACATT
* *
12311755 GTGAATCCTATCACCCTGGTCAGGAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTGAGC
1 GTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTGAGC
* *
12311820 AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAACAGAT-GAATA
66 AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGA
*
12311884 CGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTCAGCCACTAGCCTTATCTCCTTGG
131 CGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCTTGG
* * *
12311949 TTAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATACGTTGAA
196 TCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTAGTCAGCAGTGGAATACGTTGAA
*
12312014 GATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTGTCTCCCT
261 GATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCT
* * * *
12312079 GGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
326 AGTCAGCAGCGGAATAGGTGAATCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAACATT
* * *
12312140 GTGAATCCTATCTCCCTGGTCAGCAATGAAATAGGTTGAAGGTTGTGAATCCTATGTTCCTGAGC
1 GTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTGAGC
* * *
12312205 AGCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCACTCAAAGCAGTAGTGGAGCAGATCGAAGA
66 AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGA
* * * *
12312270 CGGCGAATGTTACCTTCCCAATGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
131 CGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCTTGG
*
12312335 TCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTC
196 TCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTC
12312374 TCGGGTCAGC
Statistics
Matches: 570, Mismatches: 46, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
384 4 0.01
385 355 0.62
386 210 0.37
387 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (386 bp):
GTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTGAGC
AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGA
CGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCTTGG
TCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTAGTCAGCAGTGGAATACGTTGAA
GATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCT
AGTCAGCAGCGGAATAGGTGAATCCGATCTCCCTGGTCAGCAGTGGAATAGGTTGAACATT
Found at i:12312115 original size:34 final size:34
Alignment explanation
Indices: 12312067--12312131 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
12312057 AGATTCTAAG
*
12312067 TCCTGTCTCCCTGGTCAGCAGTGGAATAGGTGAA
1 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
12312101 TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
1 TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
12312132 TGAAGATTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
Found at i:12312154 original size:78 final size:78
Alignment explanation
Indices: 12312023--12312175 Score: 245
Period size: 78 Copynumber: 2.0 Consensus size: 78
12312013 AGATTCTGAG
* *
12312023 TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTGTCTCCCTGGTCAGCAG
1 TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAA
*
12312088 TGGAATAGGTGAA
66 TGAAATAGGTGAA
* *
12312101 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCA
1 TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGTCCTATCTCCCTGGTCAGCA
12312165 ATGAAATAGGT
65 ATGAAATAGGT
12312176 TGAAGGTTGT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
78 67 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (78 bp):
TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAA
TGAAATAGGTGAA
Found at i:12312208 original size:122 final size:122
Alignment explanation
Indices: 12311979--12312219 Score: 333
Period size: 122 Copynumber: 2.0 Consensus size: 122
12311969 AGATTGTAAG
* *
12311979 TCCTATCTCCCTAGTCAGCAGTGGAATACGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAACAG
1 TCCTATCTCCCTAGTCAGCAGTGGAATACGTTGAAGATTCTGAATCCTATCTCCCTGGTCAACAA
* *
12312044 TGGAATAGGTTGAAGATTCTAAGTCCTGTCTCCCTGGTCAGCAGTGGAATAGGTGAA
66 TGAAATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
* * * *
12312101 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAA
1 TCCTATCTCCCTAGTCAGCAGTGGAATACGTTGAAGATTCTGAATCCTATCTCCCTGGTCAACAA
* * * * *
12312166 TGAAATAGGTTGAAGGTTGTGAA-TCCTATGTTCCTGAG-CAGCAGTGGAGTAGGT
66 TGAAATAGGTTGAAGATTCT-AAGTCCTATCTCCCTG-GTCAGCAGTGGAATAGGT
12312220 TGAAAATTAG
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
122 101 0.97
123 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (122 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATACGTTGAAGATTCTGAATCCTATCTCCCTGGTCAACAA
TGAAATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
Found at i:12312354 original size:298 final size:298
Alignment explanation
Indices: 12312026--12313377 Score: 1603
Period size: 298 Copynumber: 4.5 Consensus size: 298
12312016 TTCTGAGTCC
** * * *
12312026 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTGTCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGCAGTGG
12312091 AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
66 AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* * * * *
12312156 TGGTCAGCAATGAAATAGGTTGAAGGTTGTGAATCCTATGTTCCTGAGCAGCAGTGGAGTAGGTT
131 TGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
* * * * * * * *
12312221 GAAAATTAGAGATCTTATCACTCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATGTTACCTT
196 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTT
*
12312286 CCCAATGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
261 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * **
12312324 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCTCGGGTCAGCAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGCAGTGG
* * * * *
12312389 AATAGGTGAATCCTATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGTATCCTATCTCCC
66 AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* * * **
12312454 TGGTCAACAGTGTAATAGGTTTAAGATTGTGAATCCTATCTCCCTAAGCAGCAACGGAGTAGGTT
131 TGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
* *
12312519 GAAAATTACAGATCTTATCTCCCTAAGTAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATATT
196 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTT
** * * * * * *
12312584 CCCAACCTGGAAAGGAAGCAGATTTGAGCCACTAGCCC
261 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * * * * * *
12312622 TATCTCCTTGGTCAGTAATGGAATAGGTTGAAGGTTATAAGTCCTATCTGCCTGGTCAGTAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGCAGTGG
* * *
12312687 AATAGGTTAAAGTTTGTGAATCGTATCTCCCTGGTCAACAGCGG-A-A---T--AG---GTGAAT
66 -A-A---T--AG---GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * *
12312742 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGAGTAGCAGG
121 CCTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGT
*
12312807 GGAGAAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGA
186 GGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGA
*
12312872 TTGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
251 TTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * *
12312920 TATCTCCGTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGCAGTGG
* * *
12312985 AATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
66 AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* * *
12313050 TGGTCAGCAGCGTAATAGGTTGAAGATTGTGAATCGTATCACCCTGAGCAGCAGTGGAGTAGGTT
131 TGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
* * * * * *
12313115 GAAAATTATAGATCCTATCTCCCTAAGCAGCAGTGGAGCAGATCGAATATGGCGATTCTTATCTT
196 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTT
* * * * *
12313180 TCCAAGGTAGTAGGCAAGCAGATATATGCCACTAGCCT
261 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * *
12313218 TATCTCCCTGGTCAGTAGTAGAATAGGCTGAAGATTGTAAGTCGA-ATCT-CCTCGGTCAGCAGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTC-ATATCTCCCT-GGTCAGCAGT
* * **
12313281 GGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGATTGAAGATTGTCT
64 GGAATAGG-T---GA-----A-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA
* * * * *
12313346 GTCCAATCTCCTTGGTCTGCAGTGCAATAGGT
119 ATCCTATCTCCCTGGTCAGCAGTGTAATAGGT
12313378 GAATTCTATC
Statistics
Matches: 887, Mismatches: 135, Indels: 54
0.82 0.13 0.05
Matches are distributed among these distances:
288 24 0.03
289 1 0.00
290 1 0.00
291 2 0.00
293 2 0.00
295 2 0.00
296 1 0.00
297 4 0.00
298 751 0.85
299 3 0.00
300 1 0.00
301 2 0.00
302 2 0.00
303 2 0.00
305 2 0.00
306 1 0.00
307 1 0.00
308 85 0.10
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (298 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGCAGTGG
AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
TGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTT
CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
Found at i:12312459 original size:78 final size:78
Alignment explanation
Indices: 12312324--12312473 Score: 187
Period size: 78 Copynumber: 1.9 Consensus size: 78
12312314 CCACTAGCCT
* *
12312324 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCTCGGGTCAGCAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAACAGTCA
12312389 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * *
12312402 TATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGT-A-TCCTATCTCCCTGGTCAACAGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-T-TAAGTCATATCTCCCGGGTCAACAGT
**
12312465 GTAATAGGT
64 CAAATAGGT
12312474 TTAAGATTGT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
78 58 0.95
79 2 0.03
80 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAACAGTCA
AATAGGTGAATCC
Found at i:12312748 original size:34 final size:34
Alignment explanation
Indices: 12312702--12312771 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
12312692 GTTAAAGTTT
*
12312702 GTGAATCGTATCTCCCTGGTCAACAGCGGAATAG
1 GTGAATCCTATCTCCCTGGTCAACAGCGGAATAG
* *
12312736 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAG
1 GTGAATCCTATCTCCCTGGTCAACAGCGGAATAG
12312770 GT
1 GT
12312772 TGAAGATTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (34 bp):
GTGAATCCTATCTCCCTGGTCAACAGCGGAATAG
Found at i:12313049 original size:78 final size:78
Alignment explanation
Indices: 12312920--12313069 Score: 221
Period size: 78 Copynumber: 1.9 Consensus size: 78
12312910 CCACTAGCCT
* * * *
12312920 TATCTCCGTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTGAAGTCATATCTCCCTGGTCAGCAGCGA
12312985 AATAGGTGAATCC
66 AATAGGTGAATCC
* *
12312998 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-TGAAGTCATATCTCCCTGGTCAGCAGCG
*
12313062 TAATAGGT
65 AAATAGGT
12313070 TGAAGATTGT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
78 61 0.95
79 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTGAAGTCATATCTCCCTGGTCAGCAGCGA
AATAGGTGAATCC
Found at i:12313341 original size:386 final size:383
Alignment explanation
Indices: 12312920--12314061 Score: 1671
Period size: 386 Copynumber: 3.0 Consensus size: 383
12312910 CCACTAGCCT
* ** * *
12312920 TATCTCCGTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCA-ATCTCCTTGGTCTGCAGTGA
* * * *
12312985 AATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
65 AATAGGTGAATCCTATCTCCCTAGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
** * *
12313050 TGGTCAGC-AGCGTAATAGGTTGAAGATTGTGAATCGTATCACCCTGAGCAGCAGTGGAGTAGGT
130 TGGTCAGCAATAG-AATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
* * * * *
12313114 TGAAAATTATAGATCCTATCTCCCTAAGCAGCAGTGGAGCAGATCGAATATGGCGATTCTTATCT
194 TGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGA-GGCGAATCTTATCT
* * * * * *
12313179 TTCCAAGGTAGTAGGCAAGCAGATATATGCCACTAGCCTTATCTCCCTGGTCAGTAGTAGAATAG
258 TCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAG
*
12313244 GCTGAAGATTGTAAGTCGAATCT-CCTCGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCC
323 GCTGAAGATTGTAAGTC-AATCTCCCT-AGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCC
* ** *
12313306 TATCTCCCTGGTCAACAGTGGAATAGATTGAAGATTGTCTGTCCAATCTCCTTGGTCTGCAGTGC
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGT-CAATCTCCTTGGTCTGCAGTGA
*
12313371 AATAGGTGAATTCTATCTCCC-AGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
65 AATAGGTGAATCCTATCTCCCTA-GTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
* *
12313435 CTGGTTAGCAATAGAATAGGTTGACA-ATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGG
129 CTGGTCAGCAATAGAATAGGTTGA-AGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
* *
12313499 TTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAGGTCGAATCTTATC
193 TTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAGG-CGAATCTTATC
* *
12313564 TTCCCAAGATAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATG
257 TTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATA
* * *
12313629 GGTTGAAGATTGTAAGTTCTATCTCCCTAGTCAGCAGGGGAATAGGTTGACGATTGTGAGTCC
322 GGCTGAAGATTGTAAG-TCAATCTCCCTAGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCC
* * * *
12313692 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCGTTGGTCAGCAGTGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTC-AATCTCCTTGGTCTGCAGTGA
*
12313757 AATAGGTGAATCCTATCTCCCTAGTTAGCAGTGGAATAGGTTGAATATTGTGAATCCTATCTCCC
65 AATAGGTGAATCCTATCTCCCTAGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* *
12313822 TGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCTTGACCAGCAGTGGAGTAGGTT
130 TGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
* * *
12313887 GAAAAATATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATTGAAGACGGCGAATGTTATCTT
195 GAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGA-GGCGAATCTTATCTT
*
12313952 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTCGCCTTATCTCCCTGGTCAGTAGTGGAATAGG
259 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGG
* *
12314017 CTGAAGATTGTAAGTCATATCTCCCTTGTCAGCAGTGAAATAGGT
324 CTGAAGATTGTAAGTCA-ATCTCCCTAGTCAGCAGTGGAATAGGT
12314062 GAATCCTATC
Statistics
Matches: 679, Mismatches: 65, Indels: 24
0.88 0.08 0.03
Matches are distributed among these distances:
385 6 0.01
386 660 0.97
387 13 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (383 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCAATCTCCTTGGTCTGCAGTGAA
ATAGGTGAATCCTATCTCCCTAGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCT
GGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTG
AAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAGGCGAATCTTATCTTCC
CAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGCT
GAAGATTGTAAGTCAATCTCCCTAGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCC
Found at i:12313453 original size:78 final size:78
Alignment explanation
Indices: 12313305--12313455 Score: 180
Period size: 78 Copynumber: 1.9 Consensus size: 78
12313295 ATTGTGAGTC
* ** * *
12313305 CTATCTCCCTGGTCAACAGTGGAATAGATTGAAGATTGTCTGTCCAATCTCCTTGGTCTGCAGTG
1 CTATCTCCCAGGTCAACAGTGGAATAGATTGAAGATTGTCAATCCAATCTCCCTGGTCTGCAATG
12313370 CAATAGGTGAATT
66 CAATAGGTGAATT
* * * * *
12313383 CTATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGT-TAGCAAT
1 CTATCTCCCAGGTCAACAGTGGAATAGATTGAAGATTGTCAATCCAATCTCCCTGGTCT-GCAAT
12313447 AG-AATAGGT
65 -GCAATAGGT
12313456 TGACAATTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
77 1 0.02
78 59 0.97
79 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (78 bp):
CTATCTCCCAGGTCAACAGTGGAATAGATTGAAGATTGTCAATCCAATCTCCCTGGTCTGCAATG
CAATAGGTGAATT
Found at i:12313499 original size:122 final size:122
Alignment explanation
Indices: 12313275--12313864 Score: 288
Period size: 122 Copynumber: 4.7 Consensus size: 122
12313265 CTCCTCGGTC
* * * *
12313275 AGCAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGATTGAAGA
1 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAGA
** * *
12313340 TTGTCTGTCCAATCTCCTTGGTCTGCAGTGCAATAGGTGAATTCTATCTCCCAGGTT
66 TTGTCAATCCAATCTCCCTGGTCAGCAGTGCAATAGGTGAATTCTATCTCCCAGGTT
* * *
12313397 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTTAGCAATAGAATAGGTTGACA-
1 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGA-AG
* * * * *
12313461 ATTGTGAATCCTATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCA
65 ATTGTCAATCCAATCTCCCTG-GTCAGCAGTGCAATAGG-TG--AA-T-----TC-TATCTCCC-
* *
12313525 AAG-C
118 AGGTT
* * ** * * * * * * * ** *
12313529 AGTAGTAGAGCAGATCGAAGA-GGTCGAATCTTATCTTCC----CAA-GATAGTAGGGA-AGAAG
1 AGCAGTGGAATAGGTTGAAGATTGT-GAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAG
* * * * * *
12313587 ATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATGGGTTGAAGATTGTAAGTTCTATC
65 A-TT--GTCA--ATCC-AATCTCCCTGGTCAGCAGTGCAA-----T--AG-GTG-AA-TTCTATC
*
12313652 TCCCTA-GTC
114 TCCC-AGGTT
* * * * * * *
12313661 AGCAGGGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGA
1 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAGA
* ** * *
12313726 TTGT-AAGTCAAATCTCGTTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTA-GTT
66 TTGTCAA-TCCAATCTCCCTGGTCAGCAGTGCAATAGGTGAATTCTATCTCCC-AGGTT
* * *
12313783 AGCAGTGGAATAGGTTGAATATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGA
1 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAGA
* *
12313848 TTGTGAATCCTATCTCC
66 TTGTCAATCCAATCTCC
12313865 TTGACCAGCA
Statistics
Matches: 343, Mismatches: 85, Indels: 80
0.68 0.17 0.16
Matches are distributed among these distances:
122 164 0.48
123 8 0.02
124 2 0.01
125 5 0.01
126 4 0.01
127 9 0.03
128 1 0.00
129 2 0.01
131 9 0.03
132 109 0.32
133 7 0.02
134 1 0.00
135 1 0.00
136 2 0.01
137 7 0.02
138 8 0.02
139 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (122 bp):
AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAGA
TTGTCAATCCAATCTCCCTGGTCAGCAGTGCAATAGGTGAATTCTATCTCCCAGGTT
Found at i:12313819 original size:78 final size:78
Alignment explanation
Indices: 12313684--12313841 Score: 210
Period size: 78 Copynumber: 2.0 Consensus size: 78
12313674 GTTGACGATT
* * **
12313684 GTGAGTCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCGTTGGTC
1 GTGAATCCTATCTCCCTAGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTC
* *
12313749 AGCAGTGGAATAG
66 AGCAATAGAATAG
* * **
12313762 GTGAATCCTATCTCCCTAGTTAGCAGTGGAATAGGTTGAATATTGTGAA-TCCTATCTCCCTGGT
1 GTGAATCCTATCTCCCTAGTTAACAGTGGAATAGGTTGAAGATTGT-AAGTCAAATCTCCCTGGT
12313826 CAGCAATAGAATAG
65 CAGCAATAGAATAG
12313840 GT
1 GT
12313842 TGAAGATTGT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
78 67 0.97
79 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (78 bp):
GTGAATCCTATCTCCCTAGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTC
AGCAATAGAATAG
Found at i:12313874 original size:122 final size:122
Alignment explanation
Indices: 12313647--12313885 Score: 327
Period size: 122 Copynumber: 2.0 Consensus size: 122
12313637 ATTGTAAGTT
* * * * *
12313647 CTATCTCCCTAGTCAGCAGGGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTTAACAGTG
1 CTATCTCCCTAGTCAGCAGGGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATA
* **
12313712 GAATAGGTTGAAGATTGTAAGTCAAATCTCGTTGGTCAGCAGTGGAATAGGTGAATC
66 GAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGACCAGCAGTGGAATAGGTGAATC
* * * *
12313769 CTATCTCCCTAGTTAGCAGTGGAATAGGTTGAATATTGTGAATCCTATCTCCCTGGTCAGCAATA
1 CTATCTCCCTAGTCAGCAGGGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATA
** *
12313834 GAATAGGTTGAAGATTGTGAA-TCCTATCTCCTTGACCAGCAGTGGAGTAGGT
66 GAATAGGTTGAAGATTGT-AAGTCAAATCTCCTTGACCAGCAGTGGAATAGGT
12313886 TGAAAAATAT
Statistics
Matches: 101, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
122 99 0.98
123 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (122 bp):
CTATCTCCCTAGTCAGCAGGGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATA
GAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGACCAGCAGTGGAATAGGTGAATC
Found at i:12314077 original size:34 final size:35
Alignment explanation
Indices: 12314034--12314100 Score: 102
Period size: 34 Copynumber: 1.9 Consensus size: 35
12314024 TTGTAAGTCA
12314034 TATCTCCCTTGTCAGCAG-TGAAATAGG-TGAATCC
1 TATCTCCCTTGTCAGCAGTTG-AATAGGTTGAATCC
*
12314068 TATCTCCCTTGTCAGTAGTTGAATAGGTTGAAT
1 TATCTCCCTTGTCAGCAGTTGAATAGGTTGAAT
12314101 ATTGTGAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 23 0.77
35 7 0.23
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.34
Consensus pattern (35 bp):
TATCTCCCTTGTCAGCAGTTGAATAGGTTGAATCC
Found at i:12316500 original size:122 final size:122
Alignment explanation
Indices: 12316149--12316489 Score: 542
Period size: 122 Copynumber: 2.8 Consensus size: 122
12316139 TTGTAAGTCC
* * * *
12316149 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTAGTCAGCAGTG
1 TATCTCCCTTGTCAGTAGTGTAATAGGTTGAAGATTATGAA-TCCTATCTCCCTAGTCAGCAGTG
12316213 GAATAGGTTGAAGATTTTAAGTCATATCTCCCTAGTCTGCAGTGAAATAAGTGAATCT
65 GAATAGGTTGAAGATTTTAAGTCATATCTCCCTAGTCTGCAGTGAAATAAGTGAATCT
* * * *
12316271 TATCTCCCTTGTCAGTAGTGTAATAGGATGAAGATTATGAATCCTATCTCCCTTGTCTGTAGTGG
1 TATCTCCCTTGTCAGTAGTGTAATAGGTTGAAGATTATGAATCCTATCTCCCTAGTCAGCAGTGG
12316336 AATAGGTTGAAGATTTTAAGTCATATCTCCCTAGTCTGCAGTGAAATAAGTGAATCT
66 AATAGGTTGAAGATTTTAAGTCATATCTCCCTAGTCTGCAGTGAAATAAGTGAATCT
* * *
12316393 TATCTCCCTTGTCAGTAGTGTAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGCGT
1 TATCTCCCTTGTCAGTAGTGTAATAGGTTGAAGATTATGAATCCTATCTCCCTAGTCAGCAGTGG
*
12316458 AATAGGTTGAAGATTGTGAA-TCATATCTCCCT
66 AATAGGTTGAAGATT-TTAAGTCATATCTCCCT
12316490 GAGCAGCAGT
Statistics
Matches: 202, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
122 197 0.98
123 5 0.02
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (122 bp):
TATCTCCCTTGTCAGTAGTGTAATAGGTTGAAGATTATGAATCCTATCTCCCTAGTCAGCAGTGG
AATAGGTTGAAGATTTTAAGTCATATCTCCCTAGTCTGCAGTGAAATAAGTGAATCT
Found at i:12316640 original size:132 final size:131
Alignment explanation
Indices: 12316481--12316774 Score: 374
Period size: 131 Copynumber: 2.2 Consensus size: 131
12316471 TTGTGAATCA
* * * * * *
12316481 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTATAGATCCTATCTCCCTAAGTAGTAGTG
1 TATCTCCCTG-GTCAGAAGTGGAATAGGTTGAAAATTACAGAACCTATCTCCCTAAGCAGTAGTA
* * * * *
12316545 GAGCAGATCGAAGATGGCGATTCTTATCTTTCCAATGTAGTAGGCAAGCAGATATAAGCCACTAG
65 GAGCAGATCGAA-AAGGCGAATCTTATATTCCCAAGGTAGTAGGCAAGCAGATATAAGCCACTAG
12316610 CCT
129 CCT
* **
12316613 TATCTCCCTGGTCAGAAGTGGAATAGGTTAAAAATTACAGAAGTTATCTCCCTAAGCAGTAGTAG
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAAATTACAGAACCTATCTCCCTAAGCAGTAGTAG
* * *
12316678 AGTAGATCGAAAAGGCGAATCTTATATTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCC
66 AGCAGATCGAAAAGGCGAATCTTATATTCCCAAGGTAGTAGGCAAGCAGATATAAGCCACTAGCC
12316743 T
131 T
* * **
12316744 TATCTTCCTTGTCATTAGTGGAATAGGTTGA
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTGA
12316775 CGATTGTAAG
Statistics
Matches: 139, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
131 75 0.54
132 64 0.46
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (131 bp):
TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAAATTACAGAACCTATCTCCCTAAGCAGTAGTAG
AGCAGATCGAAAAGGCGAATCTTATATTCCCAAGGTAGTAGGCAAGCAGATATAAGCCACTAGCC
T
Found at i:12317181 original size:78 final size:78
Alignment explanation
Indices: 12317052--12317201 Score: 239
Period size: 78 Copynumber: 1.9 Consensus size: 78
12317042 TTGTGAGTCT
12317052 TATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
1 TATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
12317117 AATAGGTAAATCA
66 AATAGGTAAATCA
* * * * *
12317130 TATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAATG
1 TATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGT-AAGTACTATCTCCCTGGTCAGCAATG
12317194 GAATAGGT
65 GAATAGGT
12317202 TGAAGACTGC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 64 0.97
79 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (78 bp):
TATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
AATAGGTAAATCA
Found at i:12317462 original size:342 final size:337
Alignment explanation
Indices: 12317024--12317763 Score: 839
Period size: 342 Copynumber: 2.2 Consensus size: 337
12317014 CCTGGTCAGC
* * *
12317024 AGTGGGATAGGTTGAAGGTTGTGAGTCTTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTG
1 AGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTG
*
12317089 TAAGTACTATCTCCCTGGTCAGCAATGG-A-A-T-AG-GTAAATCATATCTCCCTGGTCAGCAGT
66 TAAGTACTATCTCCCTGGCCAGCAATGGAATACTAAGTGTAAATCATATCTCCCTGGTCAGCA--
* * * *
12317149 GGACTTGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGA
129 --A--T-G--GAAGA-GGTGAATCATATCTCCCTAGTCAGCAATGGAATAGGTTAAAGACTGCGA
* * * *
12317214 ATCCTATGTCCTTGAGCAGCAGTGGAGTTGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTA
186 ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAAAGATCTTATCTCCCAAAGCAGTA
* * *
12317279 GTAGAGCAGATCGAAGAC-GGCGATTCTTATGTGCCCAAGGTAGTAGGGAAGCAGATTTAAGACA
251 GTAGAGCAGATCGAAGACAGG-GAATATTATCTGCCCAAGGTAGTAGGGAAGCAGATTTAAGACA
* * **
12317343 CTGGCCTTATATCCCTATTCTTT
315 CTAGCCTTATATCCCTAGTCGGT
* * ** *
12317366 AGTGGAATAGTTTGAAGATTTTAAGTCTTATCTCCCTGGTCAGTACTGGAATAGGTTGAAGATTG
1 AGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTG
* * *
12317431 TGAGT-CATATCTCCCTGGCCAG-AAGTGGAATAGCTTGAAGATTGTAAGTCTTATCTCCCTGGT
66 TAAGTAC-TATCTCCCTGGCCAGCAA-TGGAATA-C-T-AAG--TGTAAATCATATCTCCCTGGT
* * *
12317494 CAGCAATGGAAGAGGTGAATCATATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATC
124 CAGCAATGGAAGAGGTGAATCATATCTCCCTAGTCAGCAATGGAATAGGTTAAAGACTGCGAATC
* * * * *
12317559 CTGTCTCCCTGAGCTGTAGTGGAGTAGGTTGAAAATTAAAGATCTTATCTCCCTAAGCAGTAGTG
189 CTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAAAGATCTTATCTCCCAAAGCAGTAGTA
* * *
12317624 GAGCAGATCGAAGACAGGGAATATTATCTTCCCGAGGTAGTAGGGAAGCAGATTTAAGCCACTAG
254 GAGCAGATCGAAGACAGGGAATATTATCTGCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTAG
* *
12317689 CCTTATCTCCCTGGTCGGT
319 CCTTATATCCCTAGTCGGT
* * * * * * *
12317708 AATGAAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCACCAGTGGACTAGGT
1 AGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAACAATGGAATAGGT
12317764 GAATCCTATC
Statistics
Matches: 335, Mismatches: 50, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
341 3 0.01
342 294 0.88
343 8 0.02
344 1 0.00
345 1 0.00
346 1 0.00
347 1 0.00
348 1 0.00
349 2 0.01
352 23 0.07
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (337 bp):
AGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTG
TAAGTACTATCTCCCTGGCCAGCAATGGAATACTAAGTGTAAATCATATCTCCCTGGTCAGCAAT
GGAAGAGGTGAATCATATCTCCCTAGTCAGCAATGGAATAGGTTAAAGACTGCGAATCCTATCTC
CCTGAGCAGCAGTGGAGTAGGTTGAAAATTAAAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGA
TCGAAGACAGGGAATATTATCTGCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTAGCCTTATA
TCCCTAGTCGGT
Found at i:12317589 original size:386 final size:387
Alignment explanation
Indices: 12316760--12317593 Score: 1176
Period size: 386 Copynumber: 2.2 Consensus size: 387
12316750 CCTTGTCATT
* * * *
12316760 AGTGGAATAGGTTGACGATTGT-AAGTCCTATCCCCCT-AGTCAGCAGTGGAATAGGCTGAAAAT
1 AGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAAAC
* * * *
12316823 TGTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAATTATAGATCTTATCTCCCTAAG
65 TGCGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAG
* * *
12316888 CAGTAGTAGAGCAGATCGAAGACGGTGATTCTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAA
130 CAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTAGGGAAGCAGATTTAA
* * *
12316953 GCCACTAGCCTTATCTCCCTGGTCAGTAATGGAATAGGCTGAAGATTGTAAGTCCTATCTCCCTG
195 GACACTAGCCTTATATCCCTAGTCAGTAATGGAATAGGCTGAAGATTGTAAGTCCTATCTCCCTG
* * * * * *
12317018 GTCAGCAGTGGGATAGGTTGAAGGTTGTGAGTCTTATCTCCCTGGTCAACAATGGAATAGGTTGA
260 GTCAGCACTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGCCAACAATGGAATAGCTTGA
* *
12317083 AGATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTAAATCATATCTCCCTGGTCAGC
325 AGATTGTAAGTACTATCTCCCTGGTCAGCAATGGAAGAGGTAAATCATATCTCCCTAGTCAGC
* * * *
12317146 AGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTG-GTCAGCAATGGAATAGGTTGAAGACT
1 AGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAAACT
* * *
12317210 GCGAATCCTATGTCCTTGAGCAGCAGTGGAGTTGGTTGAAAATTACAGATCTTATCTCCCAAAGC
66 GCGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGC
*
12317275 AGTAGTAGAGCAGATCGAAGACGGCGATTCTTATGTGCCCAAGGTAGTAGGGAAGCAGATTTAAG
131 AGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTAGGGAAGCAGATTTAAG
* * ** * ** * *
12317340 ACACTGGCCTTATATCCCTATTCTTTAGTGGAATAGTTTGAAGATTTTAAGTCTTATCTCCCTGG
196 ACACTAGCCTTATATCCCTAGTCAGTAATGGAATAGGCTGAAGATTGTAAGTCCTATCTCCCTGG
* *
12317405 TCAGTACTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGCCAGA-AGTGGAATAGCTTGA
261 TCAGCACTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGCCA-ACAATGGAATAGCTTGA
*
12317469 AGATTGTAAGT-CTTATCTCCCTGGTCAGCAATGGAAGAGGTGAATCATATCTCCCTAGTCAGC
325 AGATTGTAAGTAC-TATCTCCCTGGTCAGCAATGGAAGAGGTAAATCATATCTCCCTAGTCAGC
* * * * *
12317532 AGTGGAATAGGTTAAAGATTGTGAATCCTGTCTCCCTGAG-CTGTAGTGGAGTAGGTTGAAAA
1 AGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAAA
12317594 TTAAAGATCT
Statistics
Matches: 392, Mismatches: 51, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
385 1 0.00
386 387 0.99
387 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (387 bp):
AGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGTCAGCAGTGGAATAGGTTGAAAACT
GCGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGC
AGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTAGGGAAGCAGATTTAAG
ACACTAGCCTTATATCCCTAGTCAGTAATGGAATAGGCTGAAGATTGTAAGTCCTATCTCCCTGG
TCAGCACTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGCCAACAATGGAATAGCTTGAA
GATTGTAAGTACTATCTCCCTGGTCAGCAATGGAAGAGGTAAATCATATCTCCCTAGTCAGC
Found at i:12317776 original size:34 final size:34
Alignment explanation
Indices: 12317733--12317797 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
12317723 AGATTGTAAG
*
12317733 TCCTATCTCCCTAGTCACCAGTGGACTAGGTGAA
1 TCCTATCTCCCTAGTCACCAGTGGAATAGGTGAA
* *
12317767 TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
1 TCCTATCTCCCTAGTCACCAGTGGAATAGGT
12317798 TGATAATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTAGTCACCAGTGGAATAGGTGAA
Done.