Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 37 of 79
Found at i:12317821 original size:78 final size:78
Alignment explanation
Indices: 12317692--12317835 Score: 177
Period size: 78 Copynumber: 1.8 Consensus size: 78
12317682 CCACTAGCCT
* * * *
12317692 TATCTCCCTGGTCGGTAATGAAATAGGTTGAAGATTGTAAGTCCTATCTCCCT-AGTCACCAGTG
1 TATCTCCCTGGTCAGCAATGAAATAGGTTGAAGATTATAAGTCCAATCTCCCTGAG-CACCAGTG
12317756 GACTAGGTGAATCC
65 GACTAGGTGAATCC
* * *
12317770 TATCTCCCTGGTCAGCAGTGGAATAGGTTGATA-ATTATGAA-TCCAATCTCCCTGAGCAGCAGT
1 TATCTCCCTGGTCAGCAATGAAATAGGTTGA-AGATTAT-AAGTCCAATCTCCCTGAGCACCAGT
12317833 GGA
64 GGA
12317836 GAAGGTTGAA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
78 51 0.91
79 5 0.09
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (78 bp):
TATCTCCCTGGTCAGCAATGAAATAGGTTGAAGATTATAAGTCCAATCTCCCTGAGCACCAGTGG
ACTAGGTGAATCC
Found at i:12317822 original size:254 final size:252
Alignment explanation
Indices: 12317438--12318279 Score: 1024
Period size: 254 Copynumber: 3.3 Consensus size: 252
12317428 TTGTGAGTCA
* * * * * *
12317438 TATCTCCCTGGCCAGAAGTGGAATAGCTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAATGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
* * *
12317503 AAGAGGTGAATCATATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTGTCTCCC
66 AATAGGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAA-ATTGTGAATCC-ATCTCCC
* * * *
12317568 TGAGCTGTAGTGGAGTAGGTTGAAAATTAAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
129 TGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATC
*
12317633 GAAGACAGG-GAATATTATCTTCCCGAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
194 GAAGAC-GGCGAATATTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
* * * *
12317692 TATCTCCCTGGTCGGTAATGAAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCACCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
* * * *
12317757 ACTAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGATAATTATGAATCCAATCTCCC
66 AATAGGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTT-AAAATTGTGAATCC-ATCTCCC
*
12317822 TGAGCAGCAGTGGAGAAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATC
129 TGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATC
* * * * * * *
12317887 GAACACGGCGATTCTTATATTACCAAGGTAGTAAGGAAGTAGATTTAAGCCACTAGCCT
194 GAAGACGGCGAATATTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
* * * * * *
12317946 TATTTCACTGGTCAGTAGTGGAACAGGTTGAAGATTGTAAGTCTTATCTCCATGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
* ** *
12318011 AATGGATTGAAGATTGCGAGTCCTATCTCCCTCA-TCAATAGTGAAATAGGTTTAAAATTGTGAA
66 AAT--A--G--G--T--GAATCCTATCTCCCT-AGTCAGCAGTGGAATAGG-TTAAAATTGTGAA
* * * ** *
12318075 TCCTTGCTCTCTGAGCAGCAGTGGAGTAGGTTAAAAATTACAGAAGTTATCTCCCTAAGCAGTAC
119 TCCAT-CTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAG
** *
12318140 TAGAGTTGATCGAAGACGGTGAATCA-TATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCAC
183 TAGAGCAGATCGAAGACGGCGAAT-ATTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCAC
12318204 TAGCCT
247 TAGCCT
* * *
12318210 TATCTTCCTGGTCAGTAGTGGAATAGGTTGACGATTGTAAGTCCTGTCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
12318275 AATAG
66 AATAG
12318280 ACTGAAAATT
Statistics
Matches: 497, Mismatches: 75, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
253 2 0.00
254 274 0.55
255 2 0.00
256 1 0.00
258 1 0.00
260 2 0.00
262 2 0.00
263 1 0.00
264 210 0.42
265 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (252 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
AATAGGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAATTGTGAATCCATCTCCCTG
AGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGA
AGACGGCGAATATTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
Found at i:12318512 original size:219 final size:219
Alignment explanation
Indices: 12317988--12318512 Score: 673
Period size: 219 Copynumber: 2.4 Consensus size: 219
12317978 GATTGTAAGT
* * ** **
12317988 CTTATC-TCCATGGTCAGCAGTGGAAT-GGATTGAAGATTGCGAGTCCTATCTCCCTCA-TCAAT
1 CTTATCTTCC-TGGTCAGTAGGGGAATAGG-TTGAAGATTGTAAGTCCTATCTCCCT-AGTCAGC
* * *
12318050 AGTGAAATAGGTTTAAAATTGTGAATCCTTGCTCTCTGAGCAGCAGTGGAGTAGGTTAAAAATTA
63 AGTGGAATAGG-TTAAAATTGTGAATCCTTGATCCCTGAGCAGCAGTGGAGTAGGTTAAAAATTA
* ** *
12318115 CAGAAGTTATCTCCCTAAGCAGTACTAGAGTTGATCGAAGACGGTGAATCATATCTTCCCAAGGT
127 CAGAACTTATCTCCCTAAGCAGTACTAGAGCAGATCGAAGACGGCGAATCATATCTTCCCAAGGT
12318180 AGTAGGGAAGCAGATTTAAGCCACTAGC
192 AGTAGGGAAGCAGATTTAAGCCACTAGC
* * *
12318208 CTTATCTTCCTGGTCAGTAGTGGAATAGGTTGACGATTGTAAGTCCTGTCTCCCTAGTCAGCAGT
1 CTTATCTTCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGT
* * ** *
12318273 GGAATAGACTGAAAATTGTGAATCCTAT-ATCCCTGAGCAGCA-TGGAGTAGGTTGCAAATTATA
66 GGAATAG-GTTAAAATTGTGAATCCT-TGATCCCTGAGCAGCAGTGGAGTAGGTTAAAAATTACA
* * * * * *
12318336 GATCTTATCTCCCTAAGCCGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAG
129 GAACTTATCTCCCTAAGCAGTACTAGAGCAGATCGAAGACGGCGAATCATATCTTCCCAAGGTAG
*
12318401 TAGGGAAGTAGATTTAAGCCACTAGC
194 TAGGGAAGCAGATTTAAGCCACTAGC
* *
12318427 CTTATCTTCCTGGTTAGTAGGGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
1 CTTATCTTCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGT
*
12318492 GGGATAGGTTAAAGATTGTGA
66 GGAATAGGTTAAA-ATTGTGA
12318513 GTCTTATCTC
Statistics
Matches: 265, Mismatches: 34, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
218 4 0.02
219 172 0.65
220 83 0.31
221 6 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (219 bp):
CTTATCTTCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGT
GGAATAGGTTAAAATTGTGAATCCTTGATCCCTGAGCAGCAGTGGAGTAGGTTAAAAATTACAGA
ACTTATCTCCCTAAGCAGTACTAGAGCAGATCGAAGACGGCGAATCATATCTTCCCAAGGTAGTA
GGGAAGCAGATTTAAGCCACTAGC
Found at i:12318663 original size:78 final size:78
Alignment explanation
Indices: 12318517--12318666 Score: 187
Period size: 78 Copynumber: 1.9 Consensus size: 78
12318507 TTGTGAGTCT
* * * **
12318517 TATCTCCCTTGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCTGCAATGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTATAAGTACTATCTCCCAGGTCTGCAAAAG
12318582 AATAGGTGAATCA
66 AATAGGTGAATCA
* * * *
12318595 TATCTCCCTGGTCAACAGTGGACTTGGTTGAAGATTATGAA-TCCTATCTCCCAGGTCAT-TAAA
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTAT-AAGTACTATCTCCCAGGTC-TGCAAA
12318658 AGAATAGGT
64 AGAATAGGT
12318667 TAAAGATTGT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
78 58 0.95
79 3 0.05
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31
Consensus pattern (78 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTATAAGTACTATCTCCCAGGTCTGCAAAAG
AATAGGTGAATCA
Found at i:12318873 original size:44 final size:44
Alignment explanation
Indices: 12318825--12318990 Score: 174
Period size: 44 Copynumber: 4.0 Consensus size: 44
12318815 TATCTCTTTC
* * *
12318825 GTCAGTAGAGGAATAGGTTGAAGATTGT-AAGTCATATCTCCCTG
1 GTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTG
*
12318869 GTCAGCAGT-GAA-A---T--AG---GTGAATCCTATCTCCCTT
1 GTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
* * *
12318903 GTCAGTAGTGGAATAGGTTGAATATTATGAATCCTATCTCCCTG
1 GTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
*
12318947 GTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
1 GTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
12318991 AGCAACAGTA
Statistics
Matches: 99, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
34 21 0.21
35 5 0.05
36 1 0.01
37 2 0.02
39 2 0.02
41 1 0.01
42 1 0.01
43 3 0.03
44 63 0.64
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (44 bp):
GTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
Found at i:12318907 original size:34 final size:35
Alignment explanation
Indices: 12318859--12318925 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
12318849 TTGTAAGTCA
12318859 TATCTCCCTGGTCAGCAGTGAAATAGG-TGAATCC
1 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAATCC
* * *
12318893 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAT
1 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAAT
12318926 ATTATGAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 24 0.83
35 5 0.17
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (35 bp):
TATCTCCCTGGTCAGCAGTGAAATAGGTTGAATCC
Found at i:12318934 original size:298 final size:298
Alignment explanation
Indices: 12318536--12319184 Score: 899
Period size: 298 Copynumber: 2.2 Consensus size: 298
12318526 TGTCAACAGT
* *
12318536 GGAATAGGTTGAAGATTGTAAGT-ACTATCTCCCTGGTCTGCAATGGAATAGGTGAATCATATCT
1 GGAATAGGTTGAAGATTGTAAGTCA-TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCT
* * *
12318600 CCCTGGTCAACAGTGGACTTGGTTGAAGATTATGAATCCTATCTCCCAGGTCATTAAAAG-AATA
65 CCCTGGTCAACAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCAGGTCA-GAAAAGTAATA
* * * *
12318664 GGTTAAAGATTGTGAATCCTATCTCTCTGACCAGCAGTGGA-GTAGGTTGAAAATTACAGATCTT
129 GGTTAAAGATTGTGAATCCTATCTCCCTGACCAACAGTAGAGGT-GGTTGAAAATTACAGATCCT
*
12318728 ATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTACCTTCCCAAGGTAGTAGGGA
193 ATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGACGAATCTTACCTTCCCAAGGTAGTAGGGA
* *
12318793 AGAAGATGTAAGCCACTAGCCTTATCTCTTTCGTCAGTAGA
258 AGAAGATGTAAGCCACTAGCCTTATCCCTCTCGTCAGTAGA
* *
12318834 GGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTATCTC
1 GGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTC
* ** * * * **
12318899 CCTTGTCAGTAGTGGAATAGGTTGAATATTATGAATCCTATCTCCCTGGTCAGCAGTGTAATAGG
66 CCTGGTCAACAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCAGGTCAGAAAAGTAATAGG
* * *
12318964 TTGAAGATTGTGAATCCTATCTCCCTGAGCAACAGTAGAGGTGGTTGAAAATTATAGATCCTATC
131 TTAAAGATTGTGAATCCTATCTCCCTGACCAACAGTAGAGGTGGTTGAAAATTACAGATCCTATC
* * * * * *
12319029 TCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAGGGAAGT
196 TCCCAAAGCAGTAGTAGAGCAGATCGAAGACGACGAATCTTACCTTCCCAAGGTAGTAGGGAAGA
* * * *
12319094 AGATTTCAGCCACTAGCCTTATCCCTCTGGTCAGTAGT
261 AGATGTAAGCCACTAGCCTTATCCCTCTCGTCAGTAGA
* * * *
12319132 GGAATAGGTTGAAGACTGTAAGTCCTATCTCCTTAGTCAGCAGTGGAATAGGT
1 GGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGGAATAGGT
12319185 TGACGATTGT
Statistics
Matches: 308, Mismatches: 40, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
297 2 0.01
298 303 0.98
299 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (298 bp):
GGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTC
CCTGGTCAACAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCAGGTCAGAAAAGTAATAGG
TTAAAGATTGTGAATCCTATCTCCCTGACCAACAGTAGAGGTGGTTGAAAATTACAGATCCTATC
TCCCAAAGCAGTAGTAGAGCAGATCGAAGACGACGAATCTTACCTTCCCAAGGTAGTAGGGAAGA
AGATGTAAGCCACTAGCCTTATCCCTCTCGTCAGTAGA
Found at i:12319010 original size:44 final size:45
Alignment explanation
Indices: 12318886--12319047 Score: 149
Period size: 44 Copynumber: 3.7 Consensus size: 45
12318876 GTGAAATAGG
* * * *
12318886 TGAATCCTATCTCCCTTG-TCAGTAGTGGA-ATAGGTTGAATATTA
1 TGAATCCTATCTCCC-TGAGCAGCAGTAGAGATAGGTTGAAAATTA
* *
12318930 TGAATCCTATCTCCCTG-GTCAGCAGT-GTA-ATAGGTTGAAGATTG
1 TGAATCCTATCTCCCTGAG-CAGCAGTAG-AGATAGGTTGAAAATTA
* *
12318974 TGAATCCTATCTCCCTGAGCAACAGTAGAGGT-GGTTGAAAATTA
1 TGAATCCTATCTCCCTGAGCAGCAGTAGAGATAGGTTGAAAATTA
* *
12319018 T-AGATCCTATCTCCCTAAGCAGTAGTAGAG
1 TGA-ATCCTATCTCCCTGAGCAGCAGTAGAG
12319048 CAGATCGAAG
Statistics
Matches: 101, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
44 94 0.93
45 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (45 bp):
TGAATCCTATCTCCCTGAGCAGCAGTAGAGATAGGTTGAAAATTA
Found at i:12319028 original size:386 final size:379
Alignment explanation
Indices: 12318287--12319032 Score: 932
Period size: 386 Copynumber: 1.9 Consensus size: 379
12318277 TAGACTGAAA
* * * *
12318287 ATTGTGAATCCTATATCCCTGAGCAGCATGGAGTAGGTTGCAAATTATAGATCTTATCTCCCTAA
1 ATTGTGAATCCTATATCCCTGACCAGCATGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAA
* * * * * * *
12318352 GCCGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAGGGAAGTAGATTTA
66 GCAGTAGTAGAGCAGATCGAAGACGACGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTA
* * * *
12318417 AGCCACTAGCCTTATCTTCCTGGTTAGTAGGGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT
131 AGCCACTAGCCTTATCTTCCTCGTCAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCT
* *
12318482 GGTCAGCAGTGGGATAGGTTAAAGATTGTGAGTCTTATCTCCCTTGTCAACAGTGGAATAGGTTG
196 GGTCAGCAGT-GGATA-G--AAAG--TGTGAATCCTATCTCCCTTGTCAACAGTGGAATAGGTTG
* *
12318547 AAGATTGTAAGTACTATCTCCCTGGTCTGCAATGGAATAGGTGAATCATATCTCCCTGGTCAACA
255 AAGATTATAAGTACTATCTCCCTGGTCTGCAATGGAAGAGGTGAATCATATCTCCCTGGTCAACA
* * *
12318612 GTGGACTTGGTTGAAGATTATGAATCCTATCTCCCAGGTCATTAAAAGAATAGGTTAAAG
320 GTAGACGTGGTTGAAAATTATGAATCCTATCTCCCAGGTCATTAAAAGAATAGGTTAAAG
* *
12318672 ATTGTGAATCCTATCTCTCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAA
1 ATTGTGAATCCTATATCCCTGACCAGCA-TGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAA
*
12318737 AGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGT
65 AGCAGTAGTAGAGCAGATCGAAGACGACGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGT
*
12318802 AAGCCACTAGCCTTATC-TCTTTCGTCAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCC
130 AAGCCACTAGCCTTATCTTC-CTCGTCAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCC
* ** *
12318866 CTGGTCAGCAGT-GA-A-ATAG-GTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAATA
194 CTGGTCAGCAGTGGATAGAAAGTGTGAATCCTATCTCCCTTGTCAACAGTGGAATAGGTTGAAGA
* * * *
12318927 TTATGAA-TCCTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
259 TTAT-AAGTACTATCTCCCTGGT---C--TGCAAT--G--GAAGA-GGTGAATCATATCTCCCTG
*
12318991 AG-CAACAGTAGAGGTGGTTGAAAATTAT-AGATCCTATCTCCC
313 -GTCAACAGTAGACGTGGTTGAAAATTATGA-ATCCTATCTCCC
12319033 TAAGCAGTAG
Statistics
Matches: 311, Mismatches: 35, Indels: 29
0.83 0.09 0.08
Matches are distributed among these distances:
376 54 0.17
377 2 0.01
379 4 0.01
381 5 0.02
383 2 0.01
384 2 0.01
385 32 0.10
386 209 0.67
387 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (379 bp):
ATTGTGAATCCTATATCCCTGACCAGCATGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAA
GCAGTAGTAGAGCAGATCGAAGACGACGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTA
AGCCACTAGCCTTATCTTCCTCGTCAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCT
GGTCAGCAGTGGATAGAAAGTGTGAATCCTATCTCCCTTGTCAACAGTGGAATAGGTTGAAGATT
ATAAGTACTATCTCCCTGGTCTGCAATGGAAGAGGTGAATCATATCTCCCTGGTCAACAGTAGAC
GTGGTTGAAAATTATGAATCCTATCTCCCAGGTCATTAAAAGAATAGGTTAAAG
Found at i:12319978 original size:44 final size:44
Alignment explanation
Indices: 12319901--12320050 Score: 192
Period size: 44 Copynumber: 3.4 Consensus size: 44
12319891 AGTGAAATAG
* * * *
12319901 GTGAATCCTTTGTCCCTTGTCAGTAGTGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGTAGTGAAATAGGTTGAAGATT
* * * *
12319945 ATGAGTCCTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGTAGTGAAATAGGTTGAAGATT
* * *
12319989 GTGAATCCTATCTCCCTCGTCAATAGTGAAATAGGTTGAAAATT
1 GTGAATCCTATCTCCCTGGTCAGTAGTGAAATAGGTTGAAGATT
*
12320033 GTGAATCCTAGCTCCCTG
1 GTGAATCCTATCTCCCTG
12320051 AGCACTAGTG
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 90 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (44 bp):
GTGAATCCTATCTCCCTGGTCAGTAGTGAAATAGGTTGAAGATT
Found at i:12320075 original size:44 final size:44
Alignment explanation
Indices: 12319986--12320076 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 44
12319976 TAGGTTGAAG
* * * *
12319986 ATTGTGAATCCTATCTCCCTCGTCAATAGTGAAATAGGTTGAAA
1 ATTGTGAATCCTAGCTCCCTCGGCAATAGTGAAATACGTTAAAA
* * *
12320030 ATTGTGAATCCTAGCTCCCT-GAGCACTAGTGGAGTACGTTAAAA
1 ATTGTGAATCCTAGCTCCCTCG-GCAATAGTGAAATACGTTAAAA
12320074 ATT
1 ATT
12320077 ACTGAAGTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
43 1 0.03
44 38 0.97
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (44 bp):
ATTGTGAATCCTAGCTCCCTCGGCAATAGTGAAATACGTTAAAA
Found at i:12320253 original size:44 final size:45
Alignment explanation
Indices: 12320183--12320295 Score: 126
Period size: 44 Copynumber: 2.6 Consensus size: 45
12320173 ATCTTCATTT
* ** *
12320183 TCAGTAGTGGAATAGGTTGACGATTGT-AAGTCCTATCCCCCT-AG
1 TCAGCAGTGGAATAGGTTGAAAATTGTGAA-TCCAATCCCCCTGAG
* *
12320227 TCAGCAGTGGAATAGGCTGAAAATTGTGAATCCAATCTCCCTGAG
1 TCAGCAGTGGAATAGGTTGAAAATTGTGAATCCAATCCCCCTGAG
12320272 -CAGCAGTGGAGA-AGGTTGAAAATT
1 TCAGCAGTGGA-ATAGGTTGAAAATT
12320296 ACAGATCTTA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 54 0.92
45 5 0.08
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (45 bp):
TCAGCAGTGGAATAGGTTGAAAATTGTGAATCCAATCCCCCTGAG
Found at i:12320353 original size:219 final size:218
Alignment explanation
Indices: 12319953--12320465 Score: 751
Period size: 219 Copynumber: 2.3 Consensus size: 218
12319943 TTATGAGTCC
* * * * *
12319953 TATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTCGTCAATAGTG
1 TATCTCCATGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTAGTCAACAGTG
* * * *
12320017 AAATAGGTTGAAAATTGTGAATCCTAGCTCCCTGAGCACTAGTGGAGTACGTTAAAAATTACTGA
65 GAATAGG-TGAAAATTGTGAATCCAAGCTCCCTGAGCACTAGTGGAGAACGTTAAAAATTACAGA
* *
12320082 AGTTATTTCCCTAAGCAGTAGTAGAGTAGATCGAAAAGGCGAATCTTATATTCCCATGGTAGTAG
129 ACTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAAAGGCGAATCTTATATTCCCATGGTAGTAG
*
12320147 GGAAGTAGATTTAAGCCACTAGCCT
194 GGAAGTAGATTAAAGCCACTAGCCT
* ** * * *
12320172 TATCTTCATTTTCAGTAGTGGAATAGGTTGACGATTGTAAGTCCTATCCCCCTAGTCAGCAGTGG
1 TATCTCCATGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAACAGTGG
* * *
12320237 AATAGGCTGAAAATTGTGAATCCAATCTCCCTGAGCAGC-AGTGGAGAAGGTTGAAAATTACAGA
66 AATAGG-TGAAAATTGTGAATCCAAGCTCCCTGAGCA-CTAGTGGAGAACGTTAAAAATTACAGA
*
12320301 TCTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAAAGGCGAATCTTATATTCCCATGGTAGTAG
129 ACTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAAAGGCGAATCTTATATTCCCATGGTAGTAG
12320366 GGAAGTAGATTAAAGCCACTAGCCT
194 GGAAGTAGATTAAAGCCACTAGCCT
* *
12320391 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCACCAGTGG
1 TATCTCCATGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAACAGTGG
*
12320456 ACTAGGTGAA
66 AATAGGTGAA
12320466 TCCTATCTCC
Statistics
Matches: 261, Mismatches: 31, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
218 6 0.02
219 254 0.97
220 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (218 bp):
TATCTCCATGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAACAGTGG
AATAGGTGAAAATTGTGAATCCAAGCTCCCTGAGCACTAGTGGAGAACGTTAAAAATTACAGAAC
TTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAAAGGCGAATCTTATATTCCCATGGTAGTAGGG
AAGTAGATTAAAGCCACTAGCCT
Found at i:12320439 original size:44 final size:43
Alignment explanation
Indices: 12320391--12320544 Score: 132
Period size: 44 Copynumber: 3.7 Consensus size: 43
12320381 CCACTAGCCT
*
12320391 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAA-TCC
* * *
12320435 TATCTCCCTAGTCACCAGTGGACTA----G--G--TG-AATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAATCC
* *
12320469 TATCTCCCTGGTGAGCAGTGGAATAGGTTGAAAATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AATCC
*
12320513 AATCTCCCTGAG-CAGCAGTGGAGA-AGGTTGAA
1 TATCTCCCTG-GTCAGCAGTGGA-ATAGGTTGAA
12320545 AATTACAGAT
Statistics
Matches: 87, Mismatches: 11, Indels: 24
0.71 0.09 0.20
Matches are distributed among these distances:
34 24 0.28
35 2 0.02
36 2 0.02
38 2 0.02
40 1 0.01
42 2 0.02
44 52 0.60
45 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (43 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAATCC
Found at i:12320475 original size:34 final size:34
Alignment explanation
Indices: 12320432--12320496 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
12320422 AGATTGTAAG
*
12320432 TCCTATCTCCCTAGTCACCAGTGGACTAGGTGAA
1 TCCTATCTCCCTAGTCACCAGTGGAATAGGTGAA
* * *
12320466 TCCTATCTCCCTGGTGAGCAGTGGAATAGGT
1 TCCTATCTCCCTAGTCACCAGTGGAATAGGT
12320497 TGAAAATTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTAGTCACCAGTGGAATAGGTGAA
Found at i:12320520 original size:78 final size:78
Alignment explanation
Indices: 12320391--12320534 Score: 211
Period size: 78 Copynumber: 1.8 Consensus size: 78
12320381 CCACTAGCCT
* * *
12320391 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT-AGTCACCAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTAAGTCCAATCTCCCTGAG-CACCAGTG
12320455 GACTAGGTGAATCC
65 GACTAGGTGAATCC
* *
12320469 TATCTCCCTGGTGAGCAGTGGAATAGGTTGAAAATTGTGAA-TCCAATCTCCCTGAGCAGCAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGT-AAGTCCAATCTCCCTGAGCACCAGTG
12320533 GA
65 GA
12320535 GAAGGTTGAA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
78 55 0.93
79 4 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (78 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTAAGTCCAATCTCCCTGAGCACCAGTGG
ACTAGGTGAATCC
Found at i:12320701 original size:44 final size:44
Alignment explanation
Indices: 12320653--12320770 Score: 146
Period size: 44 Copynumber: 2.7 Consensus size: 44
12320643 CTTATTTCAC
*
12320653 TGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCA
1 TGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCA
* * ** *
12320697 TGGTCAGCAGTGGAATAGATTGAAGATTGCGAGTCCTATCTCCC
1 TGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCA
** * *
12320741 TCATCAATAGTGAAATAGGTTGAAGATTGT
1 TGGTCAGTAGTGGAATAGGTTGAAGATTGT
12320771 GAATCCTTGC
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 61 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (44 bp):
TGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCA
Found at i:12320878 original size:264 final size:260
Alignment explanation
Indices: 12320183--12320978 Score: 1036
Period size: 264 Copynumber: 3.1 Consensus size: 260
12320173 ATCTTCATTT
* * * * *
12320183 TCAGTAGTGGAATAGGTTGACGATTGTAAGTCCTATCCCCCTAGTCAGCAGTGGAATAGGCTGAA
1 TCAGCAGTGGAATAGATTGA-GATTG-GAGTCCTATCTCCCTA-TCAGCAGTGGAATAGGTTGAA
12320248 AATTGTGAATCCAATCTCCCTGAGCAGCAGTGGAGAAGGTTGAAAATTACAGATCTTATCTCCCT
63 AATTGTGAATCCAATCTCCCTGAGCAGCAGTGGAGAAGGTTGAAAATTACAGATCTTATCTCCCT
* * *
12320313 AAGCAGTAGTAGAGTAGATCGAAAAGGCGAATCTTATATTCCCATGGTAGTAGGGAAGTAGATTA
128 AAGCAGTAGTAGAGTAGATCGAAACGGCGAATCTTATATTCCCAAGGTAGTAGGGAAGTAGATTT
* *
12320378 AAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
193 AAGCCACTAGCCTTATTTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
12320443 TAG
258 TAG
* * * * *
12320446 TCACCAGTGGACT--A--G-G--T-GAATCCTATCTCCCTGGTGAGCAGTGGAATAGGTTGAAAA
1 TCAGCAGTGGAATAGATTGAGATTGGAGTCCTATCTCCCT-ATCAGCAGTGGAATAGGTTGAAAA
12320503 TTGTGAATCCAATCTCCCTGAGCAGCAGTGGAGAAGGTTGAAAATTACAGATCTTATCTCCCTAA
65 TTGTGAATCCAATCTCCCTGAGCAGCAGTGGAGAAGGTTGAAAATTACAGATCTTATCTCCCTAA
* * * * *
12320568 GCAGTAGTAGAGCAGATCGAACACGGTGATTCTTATATTACCAAGGTAGTAAGGAAGTAGATTTA
130 GCAGTAGTAGAGTAGATCGAA-ACGGCGAATCTTATATTCCCAAGGTAGTAGGGAAGTAGATTTA
* *
12320633 AGCCACTAGCCTTATTTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCAT
194 AGCCACTAGCCTTATTTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT
*
12320698 GG
259 AG
** *
12320700 TCAGCAGTGGAATAGATTGAAGATTGCGAGTCCTATCTCCCTCATCAATAGTGAAATAGGTTGAA
1 TCAGCAGTGGAATAGATTG-AGATTG-GAGTCCTATCTCCCT-ATCAGCAGTGGAATAGGTTGAA
* * * * * * **
12320765 GATTGTGAATCC-TTGCTCTCTGAGCAGCAGTAGAGTAGGTTAAAAATTACAGAAGTTATCTCCC
63 AATTGTGAATCCAAT-CTCCCTGAGCAGCAGTGGAGAAGGTTGAAAATTACAGATCTTATCTCCC
* * * * *
12320829 TAAGCAGTAGTAGAGTTGATCGAAGACGGCGAATCATATCTTCCCAAGGTAGGAGGGAAGCAGAT
127 TAAGCAGTAGTAGAGTAGATCGAA-ACGGCGAATCTTATATTCCCAAGGTAGTAGGGAAGTAGAT
* * * *
12320894 TTAAGCCACTAGCCTTATCTT-ATTGGTCAGTATTGGAATAGGTTGACGATTGTAAGTCCTGTCT
191 TTAAGCCACTAGCCTTAT-TTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCT
12320958 CCCTAG
255 CCCTAG
12320964 TCAGCAGTGGAATAG
1 TCAGCAGTGGAATAG
12320979 GCTGAAAATT
Statistics
Matches: 461, Mismatches: 58, Indels: 27
0.84 0.11 0.05
Matches are distributed among these distances:
253 118 0.26
254 109 0.24
255 1 0.00
256 1 0.00
257 1 0.00
258 1 0.00
259 1 0.00
260 1 0.00
262 1 0.00
263 11 0.02
264 214 0.46
265 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (260 bp):
TCAGCAGTGGAATAGATTGAGATTGGAGTCCTATCTCCCTATCAGCAGTGGAATAGGTTGAAAAT
TGTGAATCCAATCTCCCTGAGCAGCAGTGGAGAAGGTTGAAAATTACAGATCTTATCTCCCTAAG
CAGTAGTAGAGTAGATCGAAACGGCGAATCTTATATTCCCAAGGTAGTAGGGAAGTAGATTTAAG
CCACTAGCCTTATTTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAG
Found at i:12321285 original size:44 final size:43
Alignment explanation
Indices: 12321129--12327078 Score: 748
Period size: 44 Copynumber: 138.7 Consensus size: 43
12321119 CCACTAGCCT
* * * * *
12321129 TATCTTCCTGGTTAGTAGGGGAATAGGTTGAAGATTGTAATTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * *
12321173 TATCTCCCTGGTCAGTAGTGGGATAGGTTAAAGATTGTAAGTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12321216 TTATCTCCCTTGTCAACAGTCGAATAGGTTGAAGATTGTAAGTAC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * *
12321261 TATCTCCCTGGTCTGCAATGGAATAGG-TG-A-A---TCA---
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * * * *
12321295 TATCTCCCTGGCCAACAGTGGACTTGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
** * *
12321339 TATCT-CCTAGGTCATTAATAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
*** *
12321383 TATCTCCCTAACCAGCAGTGGAGTAGGTTGAA-ATT-TACAGATC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TC
* * ** * * * *
12321426 TTATCT-CCTAAAG-CAGTAGTGGAGCAGATCGAAGA-CG-ACGAATC
1 -TATCTCCCT--GGTCAGCAGTGGAATAGGTTGAAGATTGTA--AGTC
* * * * * * **** *
12321470 TTACCTTCCCAAGGT-AGTAG-GGAAGAAGATGTAAGCCACT-AGCC
1 -TATC-TCCC-TGGTCAGCAGTGGAATAGGTTG-AAGATTGTAAGTC
* *
12321514 TTATCTCCTTGGTCAGTA-TAGGAATAGGTTGAAGATTGTAAGTC
1 -TATCTCCCTGGTCAGCAGT-GGAATAGGTTGAAGATTGTAAGTC
* *
12321558 ATATCTCCCTGGTCAGCAGTGAAATAGG-TG-A-A---T---CC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
*
12321593 TATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * *
12321637 TATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-T-C
* * * ** * * ** ** *
12321681 TATCTCCCT-ATGCAGTAGTAGAGCAGATCGAAGACAGCGATTC
1 TATCTCCCTGGT-CAGCAGTGGAATAGGTTGAAGATTGTAAGTC
** * * ** **** *
12321724 TTATCTTTCCAAGGT-AGTAG-GGAAGTAGATTTCAGCCACT-AGCC
1 -TATC--TCCCTGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTC
* * *
12321768 TTATCTCTCTGGTTAGTAGTGGAATAGGTTGAAGATTGTAAGTC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12321812 ATATCTCCCTAGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * *
12321857 TAACTTCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
*
12321901 TATCTCCCTGGTCAGCAGTGGAATAGG-TG-A-A---T---CC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
** *
12321935 TCCCTCCCTGGTCA-CTAGTGGAATGGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGC-AGTGGAATAGGTTGAAGATTGT-AAGT-C
*
12321979 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* *
12322023 TATGAT-CCTGAG-CAGCAGTGGAGTAGGTTGAA-ATT-TACAGATC
1 TAT-CTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TC
* * * * * * ** *
12322066 TTATCT-CTTAAAG-CTGTAGTGGAACA-GATGAAGAAGGCGAA-TC
1 -TATCTCCCT--GGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTC
* * * * * **** *
12322109 TTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AGAC
1 -TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTC
* * *
12322153 TTATCTCTCTGGTCAGTAGTGGATTAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * *
12322198 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * *
12322242 TATCTCCCTGGCCAACAGTGGAATTGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
*
12322286 TATCTCCCTGGTCAGCAGTGGAATAGG-TG-A-A---T---CC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
*
12322320 TATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
** * *
12322364 TATCTCCCTGACCAGCAGTGGAGTAGGTTGAA-AAT-TACAGATC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TC
** ** * * * ** *
12322407 TTATCTCCCAAAG-CAGTGGTGGAGTAGATCGAAGACGGCGAA-TC
1 -TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTC
* * * * * * **** *
12322451 TTACCTTCCCAAGGT-AGTAG-GGAAGAAGATGTAAGCCACT-AGCC
1 -TATC-TCCC-TGGTCAGCAGTGGAATAGGTTG-AAGATTGTAAGTC
* * * * * *
12322495 TTGTCTCCTTCGTGAGTAGAGGAATAGGTTGAAGATTGTAAGTC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
** * *
12322539 ATATCTCCCAAGTCAGCAGTGAAATAGG-TG-A-A---T---CC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* *
12322574 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * ** * ** *
12322618 TATCTCTCTGGTCAGTAGTGTTATAGGTTGTAGATTACAAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * *
12322662 TATCTCCCTGAG-CAGCAATGGAGTAGGTTGAA-AAT-TACAGATC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TC
** * * * * ** ** *
12322705 TTATCTCCCAAAG-CAGTAGTAGAGTAGATTGAAGACGGCGATTC
1 -TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
** * * **** *
12322749 TTATCTTCCCATGGT-AGCAG-GGACGCAGATTTAAGCCACT-AGCC
1 -TATC-TCCC-TGGTCAGCAGTGGA-ATAGGTTGAAGATTGTAAGTC
*
12322793 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * * *
12322838 TATCTCCCTAGTCAGAAGTGGAATAGGTTGAAGATTCTGAGTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
*
12322881 TTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * *
12322926 TATCTCCCTGGTCAACTGTGGAATAGG-TG-A-A---T---CC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12322960 TATCTCCCTGGTCACCAGTGGAATAGGTTGAAGGTTATGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
*
12323004 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * **
12323048 TATGTTCCTGAG-CAGCAGTGGCGTAGGTTGAA-ATT-TACAGATC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TC
* * * * * * ** *
12323091 TTATCT-CTTAAAG-CAGTAGTGGAACA-GATAAAGACGGCGAA-TC
1 -TATCTCCCT--GGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTC
* * * * * **** *
12323134 TTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AGCC
1 -TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTC
* * * *
12323178 TTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAACTC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12323222 ATATCTCCCAGGTCAGCAGTGAAATAGG-TG-A-A---T---CC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12323257 TATCTCCCTTGTCAGTAGTGGAATAGGATGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* *
12323301 TATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * * *
12323345 TATCTCCCTGAG-CAGCAGTGCAGTAAGTTGAA-AAT-TACAGATC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TC
* * * ** ** * * ** ** *
12323388 GTATCTCTCTAAGT-AGTAGCAGAGCAGATCGAAGACGGCGATTC
1 -TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* ** * * * * **** *
12323432 TTATATTCCCAAG-CTGGTAG-GGAAGCAGATTTG-AGCCACT-AGCC
1 -TAT-CTCCCTGGTC-AGCAGTGGAA-TAG-GTTGAAGATTGTAAGTC
* * * * * * *
12323476 TTATCTCCCTGGTAAGTAATGGAACATGTTGAAGGTTATAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
*
12323521 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* *
12323565 TATCTCCCTGGTCAACAGTGGAATAGG-TG-A-A---T---CC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12323599 AATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* *
12323643 TATCTCCCTGAG-CAGCAGTGGAGA-AGGTTGAA-AAT-TACAGACC
1 TATCTCCCTG-GTCAGCAGTGGA-ATAGGTTGAAGATTGTA-AG-TC
* * * ** * * ** ** *
12323686 TTATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCC
1 -TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * * * * **** *
12323731 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AGCC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTC
* * * *
12323774 TTATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTGTTAGTGA
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * *
12323819 TATCTCCGTGGTCAGCAGTGAAATAGG-TG-A-A---T---CC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12323853 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTC
* *
12323896 TTATCTCCATGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-TCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * * *
12323941 TATCTCCCTAAG-CAGCAGTGGAGTAGGTTGAAAATTAT-AGATCC
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAG-T-C
* * * * * * ** *
12323985 TATCTCCCTAAG-CAGTAGTGGAGTAGATCGAAGATGGCGATTC
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
*** * * * **** *
12324028 TTATCTTTCGAAGGT-AGTAG-GGAAGCAGATAT-AAGCCACT-AGCC
1 -TATC--TCCCTGGTCAGCAGTGGAA-TAGGT-TGAAGATTGTAAGTC
*
12324072 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* *
12324116 GTATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* *
12324160 GTATCTCCCTGGTCAACAGTGGAGTAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * *
12324205 AATCTCCTTGGTCTGCAGTGGAATAGG-TG--GA---T---TC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
**
12324239 TATCTCCCTGGTTGGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * * *
12324283 TATCTCCCTAAGT-AGCAGTAGAGTAGGTTGAA-AAT-TACAGATC
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TC
** * ** * * ** *
12324326 TTATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGACGGCGAATGT-
1 -TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTG-TAA-GTC
* * * * * * **** *
12324371 TATCTTCCCAAGG-AAGTAG-GGAAGAAGATTTAAGCCACT-AGCC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTC
*
12324414 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12324458 ATATCTCCCTGGTCTGCAGTGAAATA-G--G-AGA--AT-A--C
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * * * * * *
12324493 TTTGTCCCTTGTCAGTACTGGAATAGGTTGAAGATTATGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
*
12324537 TATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* ** * *
12324581 TATCTCCCTCGTCAATAGTGAAATAGGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * * *
12324625 TAGCTCCCTGAG-CAGCAGTGGAGTAGGTTAAAAATTACAG-AAGT-
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATT---GTAAGTC
* * * * * * * * * *
12324669 TATCTCCCTAAG-CAGTAGTAGAGTAGATCGAAG-TGGCGAATTTT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTG-TAA-GTC
* * * * * **** *
12324713 TAT-TCCCAAGGT-AGTAG-GGAAGCAGATTTAAGGCACTAGCGT-
1 TATCTCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTA-AGTC
* * * *
12324755 TATCTTCCTGGTTAGTAGTGGAATAGGTTGACGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * * *
12324799 TATCTCCCTAGTCAGCAGTGGAATAGGCTGAAAATTTTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * * * *
12324843 AATATCCCTGAG-CAGCAGTGGAGTAGGTTGCAA-ATTAT-AGATAT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTG-AAGATTGTAAG-T-C
* * * ** * * ** ** *
12324887 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTC
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * * * * ** *
12324930 TTATCTTCCCAAGGT-AGTAG-GGAAGTAGATTTAAGCTACT-AGCC
1 -TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTC
*
12324974 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * *
12325019 TATCTCCCTGGTCAGCAGCGGGATAGGTTGAAGATTG-AGAGAC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTA-AGTC
* * * *
12325062 TTATCTCCCTGGTCAACAATAGAATAGGTTTAAGATTGTAAGTAC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* *
12325107 TATCTCCCTGGTCAGCAATGGAATAGG-TG-A-A---TCA---
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * * *
12325141 TATCTCCCTGGTCAGCAGTGGACTTGGTTAAAGATTGGGAA-TC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT-GTAAGTC
* * *
12325184 TTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAA-TCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGT-C
* * * * *
12325229 AATGTCCTTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TC
*** * ** ** * ** ** *
12325272 TTATCTTCCAAAG-CAGTAGTGGAGCAAATCGAAGACGGCGATTC
1 -TATC-TCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * * * * *** * *
12325316 TTATCTGCCCAAGGT-AGTAG-GGAAACAGATTTAAGACACT-GGCC
1 -TATCT-CCC-TGGTCAGCAGTGG-AATAGGTTGAAGATTGTAAGTC
** * * *** *
12325360 TTATAACTCTGTTCTTTAGTGGAATAGGTTGAAGATTTTAAGTC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* *
12325404 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* *
12325448 ATATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATCT-TAAGCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGAT-TGTAAGTC
* * *
12325492 TTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
*
12325536 ATATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* *
12325581 TATCTCCCTGGTCAGCAATGGAATAGG-TG-A-A---T---CC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* *
12325615 TATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * * * * ** * *
12325659 TGTCTCCCTGAG-CAGTAGTGTAGTAGGTTGAAAATTACAGATTT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AGTC
* * * ** * * ** * *
12325703 TATCTCCCTAAG-CAGTAGTTGAGCAGATCGAAGACAGCGAA-TAT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGT-C
* * * * * **** *
12325747 TATCTTCCCGAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AGCC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTC
* *
12325790 TTATCTCCCTGGTCGGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
12325835 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * *
12325879 AATCTCCCTGAG-CAACAGTGGAGA-AGGTTGAA-AAT-TACAGATC
1 TATCTCCCTG-GTCAGCAGTGGA-ATAGGTTGAAGATTGTA-AG-TC
* ** * ** * ** * ** *
12325922 TTATCTCCCTAAG-CAGTTGTAGAGCAGATCAAACACGGCT-ATTC
1 -TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTC
** * * * * * ** *
12325966 TTATCTTACCAAGGT-AGTA-AGGAAGTAGATTTAAGCTACT-AGCC
1 -TATC-T-CCCTGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTC
* * *
12326010 TTATTTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * **
12326054 TTATCTCCATGGTCAGCAGTGGAATAGATTGAAGATTGCGAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
** ** * *
12326099 TATCTCCCTCATCAATAGTGAAATAGGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * * *
12326143 T-TGCTCCCTGAG-CAGTAGTGGAGTAGGTTAAAAATTACAG-AAGT-
1 TAT-CTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATT---GTAAGTC
*** * * ** * * ** *
12326187 TATCTCCCTAACCAGTAGTAGAGCAGATTAAAGACGGCGAA-TC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTC
* * * * * * *** *
12326230 ATATCTTCCCAAGGT-AGTA-AGGAAGCAGATTTAAGACACT-AGCC
1 -TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTC
* * * *
12326274 TTATCTTCCTGGTCAGTAGTGGAATAGGTAGACGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * * *
12326319 TGTCTCCCTAGTCAGCAGTGGAATAGGCTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * *
12326363 TATATCCCTGAG-CAGCAGTGGAGTAGGTTGCAA-ATTAT-AGATC
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTG-AAGATTGTAAG-TC
* * * ** * * ** ** *
12326406 TTATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTC
1 -TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * * * **** *
12326450 TTATCTTCCCAAGGT-AGTAG-GGAAGTAGATTTAAGCCACT-AGCC
1 -TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTC
* * * * *
12326494 TTATCTTCATGGTTAGTAGGGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * *
12326539 TATCTCCCTGGTCAGCAGTGGGATAGGTTAAAGATTGTGAGTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12326582 TTATCTCTCTTGTCAACAGTGGAATAGGTTGAAGATTGTAAGTAC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT-C
* * *
12326627 TATCTCCCTGGTAAGCAATGGAATAGG-TG-A-A---TCA---
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* *
12326661 TATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * * *
12326705 TATCTCCCTAGTCAGCAATAGAATAGGTTGAAGATTGGGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT-GTAAGT-C
** * * *
12326749 TATCTCCCTGACCAGTAGTGGAGTAGGTTGAA-AAT-TACAGATC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TC
** * ** * * * *
12326792 TTATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGATGGCGAA-TC
1 -TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTC
* * * * *** **** *
12326836 TTACCTTCCTAAGGT-AGTAG-GGAAGAAAATGTAAGCCACTAA-CC
1 -TATCTCCCT--GGTCAGCAGTGGAATAGGTTG-AAGATTGTAAGTC
* *
12326880 TTATCTCCTTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* *
12326924 ATATCTCCCTGGTCAGCAGTGAAATAGG-TG-A-A---T---CC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12326959 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* * *
12327003 AATCTCCCTGGTCAGCAGTGTAATAAGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT-C
* *
12327047 TATCTCCCTGAG-CAGCAGTGGAGTGGGTTGAA
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
12327079 AATTATAGAT
Statistics
Matches: 4309, Mismatches: 1102, Indels: 990
0.67 0.17 0.15
Matches are distributed among these distances:
33 1 0.00
34 357 0.08
35 33 0.01
36 13 0.00
37 16 0.00
38 21 0.00
40 19 0.00
41 31 0.01
42 105 0.02
43 429 0.10
44 2923 0.68
45 334 0.08
46 19 0.00
47 8 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (43 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
Found at i:12321622 original size:254 final size:254
Alignment explanation
Indices: 12321360--12321840 Score: 754
Period size: 254 Copynumber: 1.9 Consensus size: 254
12321350 TCATTAATAG
*
12321360 AATAGGTTGAAGATTGTGAATCCTATCTCCCTAACCAGCAGTGGAGTAGGTTGAAATTTACAGAT
1 AATAGGTTGAAGATTGTGAATCCTATCTCCCTAACCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* *
12321425 CTTATCT-CCTAAAGCAGTAGTGGAGCAGATCGAAGAC-GACGAATCTTACCTTCCCAAGGTAGT
66 CCTATCTCCCT-AAGCAGTAGTAGAGCAGATCGAAGACAG-CGAATCTTACCTTCCCAAGGTAGT
12321488 AGGGAAGAAGATGTAAGCCACTAGCCTTATCTC-CTTGGTCAGTA-TAGGAATAGGTTGAAGATT
129 AGGGAAGAAGATGTAAGCCACTAGCCTTATCTCTC-TGGTCAGTAGT-GGAATAGGTTGAAGATT
*
12321551 GTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGT
192 GTAAGTCATATCTCCCTAGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGT
* * *
12321614 AATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGAT
1 AATAGGTTGAAGATTGTGAATCCTATCTCCCTAACCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * * *
12321679 CCTATCTCCCTATGCAGTAGTAGAGCAGATCGAAGACAGCGATTCTTATCTTTCCAAGGTAGTAG
66 CCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACAGCGAATCTTACCTTCCCAAGGTAGTAG
* * * *
12321744 GGAAGTAGATTTCAGCCACTAGCCTTATCTCTCTGGTTAGTAGTGGAATAGGTTGAAGATTGTAA
131 GGAAGAAGATGTAAGCCACTAGCCTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAA
*
12321809 GTCATATCTCCCTAGTCAGCAGTGGAATAGGT
196 GTCATATCTCCCTAGTCAGCAGTGAAATAGGT
12321841 TGACGATTGT
Statistics
Matches: 207, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
254 201 0.97
255 6 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (254 bp):
AATAGGTTGAAGATTGTGAATCCTATCTCCCTAACCAGCAGTGGAGTAGGTTGAAAATTACAGAT
CCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACAGCGAATCTTACCTTCCCAAGGTAGTAG
GGAAGAAGATGTAAGCCACTAGCCTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAA
GTCATATCTCCCTAGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGT
Found at i:12321851 original size:220 final size:220
Alignment explanation
Indices: 12320687--12321909 Score: 750
Period size: 220 Copynumber: 5.7 Consensus size: 220
12320677 GATTGTAAGT
* * ** **
12320687 CTTATCTC-CATGGTCAGCAGTGGAATAGATTGAAGATTGCGAGTCCTATCTCCCTCA-TCAATA
1 CTTATCTCTC-TGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT-AGTCAGCA
* * * *
12320750 GTGAAATAGGTTGAAGATTGTGAATCCT-TGCTCTCTGAGCAGCAGTAGAGTAGGTTAAAAATTA
64 GTGGAATAGGTTGAAGATTGTGAATCCTAT-CTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTA
*** ** * *
12320814 CAGAAGTTATCTCCCTAAGCAGTAGTAGAGTTGATCGAAGACGGCGAATCATATCTTCCCAAGGT
128 CAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGGT
* *
12320879 AGGAGGGAAGCAGATTTAAGCCACTAGC
193 AGTAGGGAAGTAGATTTAAGCCACTAGC
* * * *
12320907 CTTATCT-TATTGGTCAGTATTGGAATAGGTTGACGATTGTAAGTCCTGTCTCCCTAGTCAGCAG
1 CTTATCTCT-CTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAG
* * * * * * *
12320971 TGGAATAGGCTGAAAATTGTGAATCCTATATCCATGAGCAGCAATGGAGTAGGTTGCAAATTATA
65 TGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACA
* * *
12321036 GATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATCTTTCCAAGGTAG
130 GATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGGTAG
12321101 TAGGGAAGTAGATTTAAGCCACTAGC
195 TAGGGAAGTAGATTTAAGCCACTAGC
* * * * *
12321127 CTTATCT-TCCTGGTTAGTAGGGGAATAGGTTGAAGATTGTAATTCCTATCTCCCTGGTCAGTAG
1 CTTATCTCT-CTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAG
* * * * * * * *
12321191 TGGGATAGGTTAAAGATTGT-AAGTCTTATCTCCCTTG-TCAACAGTCGAATAGGTTGAAGATTG
65 TGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCC-TGAGCAGCAGTGGAGTAGGTTGAA-AAT-
* * * * * * **
12321254 TA-AG-TACTATCTCCCT--G--GT-CT---GCA-ATGGAATA-GGTGAATCATATC--TCCCTG
126 TACAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAG
* ** * * * * *
12321305 GCCAACAGTGG-ACTTGGTTGAAG--ATTATGAATC
191 G-TAGTAG-GGAAGTAGATTTAAGCCACTA-G---C
* * * **
12321338 C-TATCTC-CTAGGTCATTAATAGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTAACCAGCA
1 CTTATCTCTCT-GGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTAGTCAGCA
* * * * * * * * * *
12321400 GTGGAGTAGGTTGAA-ATT-TACAGATCTTATCT-CCTAAAGCAGTAGTGGAGCAGATCGAAGAC
64 GTGGAATAGGTTGAAGATTGT-GA-ATCCTATCTCCCT-GAGCAGCAGTGGAGTAGGTTGAAAAT
* * * * ** * **
12321462 GAC-GAATCTTACCTTCCC-AAG--GTAGTAGGGAAGAAGAT-GTAAG-CCACTAGCCTTATC--
126 TACAG-ATCCTATC-TCCCTAAGCAGTAGTA--G-AGCAGATCG-AAGACGGCGAATCTTATCTT
** * * * **** *
12321519 TCCTTGGTCAGTATAGGAA-TAGGTTGAAGATTGTAAGT
185 TCCAAGGT-AGTA-GGGAAGTAGATTTAAGCCACT-AGC
* * * * *
12321557 CATATCTCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCCTATCTCCCTGGTCAGCAGT
1 CTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGT
* *
12321612 GTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAG
66 GGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAG
* * *
12321677 ATCCTATCTCCCTATGCAGTAGTAGAGCAGATCGAAGACAGCGATTCTTATCTTTCCAAGGTAGT
131 ATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGGTAGT
*
12321742 AGGGAAGTAGATTTCAGCCACTAGC
196 AGGGAAGTAGATTTAAGCCACTAGC
* *
12321767 CTTATCTCTCTGGTTAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAGT
1 CTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGT
* * * * * * *
12321832 GGAATAGGTTGACGATTGTGAGTCCTAACTTCCTG-GTCAACAGTGGAATAGGTTGAAGATTGTA
66 GGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TA
12321896 -AG-TCCTATCTCCCT
128 CAGATCCTATCTCCCT
12321910 GGTCAGCAGT
Statistics
Matches: 757, Mismatches: 175, Indels: 142
0.70 0.16 0.13
Matches are distributed among these distances:
207 3 0.00
208 10 0.01
209 31 0.04
210 199 0.26
211 37 0.05
212 22 0.03
213 3 0.00
215 3 0.00
216 2 0.00
217 2 0.00
218 4 0.01
219 13 0.02
220 407 0.54
221 14 0.02
222 6 0.01
223 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (220 bp):
CTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGT
GGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAG
ATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGGTAGT
AGGGAAGTAGATTTAAGCCACTAGC
Found at i:12321992 original size:78 final size:78
Alignment explanation
Indices: 12321863--12322006 Score: 238
Period size: 78 Copynumber: 1.8 Consensus size: 78
12321853 GTCCTAACTT
*
12321863 CCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGG
1 CCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATGGAATAGG
12321928 TGAATCCTCCCTC
66 TGAATCCTCCCTC
*
12321941 CCTGGTC-ACTAGTGGAATGGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAATGGAATA
1 CCTGGTCAAC-AGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAATGGAATA
12322004 GGT
64 GGT
12322007 TGAAGATTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
77 2 0.03
78 58 0.94
79 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (78 bp):
CCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATGGAATAGG
TGAATCCTCCCTC
Found at i:12322039 original size:122 final size:122
Alignment explanation
Indices: 12321816--12322373 Score: 318
Period size: 122 Copynumber: 4.4 Consensus size: 122
12321806 TAAGTCATAT
* * * *
12321816 CTCCCTAGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTAACTTCCTGGTCAACAGTGGAAT
1 CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAACTCCCTGGTCAACAATGGAAT
*
12321881 AGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTCC
66 AGGTTGAAGATTGTAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTGAATCCTCC
* * * *
12321938 CTCCCTGGTCA-CTAGTGGAATGGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAA
1 CTCCCTAGTCAGC-AGTGGAATAGGTTGAAGATTGTGAATCCTAACTCCCTGGTCAACAATGGAA
* *
12322002 TAGGTTGAAGATTGTGAA-TCCTATGAT-CCTGAG-CAGCAGTGGAGTAGGTTGAAATTTACAGA
65 TAGGTTGAAGATTGT-AAGTCCTAT-ATCCCTG-GTCAGCAGTGGAATAGG-TG-AA--T-C--C
*
12322064 TCTT
120 TC-C
* * * * * * ** * * *
12322068 ATCTCTTAAAG-CTGTAGTGGAACA-GATGAAGAAGGCGAAT-CTTA-T--CT--TC-CCAA-GG
1 CTC-CCT--AGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAACTCCCTGGTCAACAATGG
* ** * *
12322123 TAGTAGGGAAGAAGATT-TAAGCCACTAGACTTATCTCTCTGGTCAGTAGTGGATTAGGTTGAAG
63 -AATA-GGTTGAAGATTGTAAGTC-CT--A--TATC-C-CTGGTCAGCAGTGGA--A---T--AG
* **
12322187 ATTGTAAGTCCTAT
112 -GTG-AA-TCCTCC
* * * * *
12322201 CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGCCAACAGTGGAAT
1 CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAACTCCCTGGTCAACAATGGAAT
* * **
12322266 TGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTAT
66 AGGTTGAAGATTGTAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTGAATCCTCC
* * *
12322323 CTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
1 CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAACTCCCTG
12322374 ACCAGCAGTG
Statistics
Matches: 324, Mismatches: 65, Indels: 94
0.67 0.13 0.19
Matches are distributed among these distances:
121 1 0.00
122 146 0.45
123 12 0.04
124 12 0.04
125 15 0.05
126 1 0.00
127 5 0.02
128 2 0.01
129 4 0.01
130 9 0.03
131 36 0.11
132 34 0.10
133 7 0.02
134 5 0.02
136 5 0.02
137 1 0.00
138 18 0.06
139 9 0.03
140 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (122 bp):
CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAACTCCCTGGTCAACAATGGAAT
AGGTTGAAGATTGTAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTGAATCCTCC
Found at i:12322228 original size:385 final size:386
Alignment explanation
Indices: 12321585--12322395 Score: 1279
Period size: 385 Copynumber: 2.1 Consensus size: 386
12321575 AGTGAAATAG
* *
12321585 GTGAATCCTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGC
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATATCCCTGAGC
* * *
12321650 AGTAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCTATGCAGTAGTAGAGCAGATCGAAGA
66 AGCAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAGAACAGATCGAAGA
* * * * *
12321715 CAGCGATTCTTATCTTTCCAAGGTAGTAGGGAAGTAGATTTCAGCCACTAGCCTTATCTCTCTGG
131 CAGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGACTTATCTCTCTGG
* *
12321780 TTAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAGTGGAATAGGTTGAC
196 TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAGTGGAATAGGTTGAA
* * *
12321845 GATTGTGAGTCCTAACTTCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT
261 GATTCTGAGTCCTAACTCCCTGGCCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT
* * *
12321910 GGTCAGCAGTGGAATAGGTGAATCCTCCCTCCCTGGTCACTAGTGGAATGGGTTGAAGATT
326 GGTCAGCAGTGGAATAGGTGAATCCTACCTCCCTGGTCACCAGTGGAATAGGTTGAAGATT
*
12321971 GTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGAT-CCTGAG
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAT-ATCCCTGAG
* * * * *
12322035 CAGCAGTGGAGTAGGTTGAAATTTACAGATCTTATCT-CTTAAAGCTGTAGTGGAACAGAT-GAA
65 CAGCAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCT-AAGCAGTAGTAGAACAGATCGAA
12322098 GA-AGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGACTTATCTCTC
129 GACA-GCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGACTTATCTCTC
* *
12322162 TGGTCAGTAGTGGATTAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTT
193 TGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAGTGGAATAGGTT
* *
12322227 GAAGATTCTGAGTCCTATCTCCCTGGCCAACAGTGGAATTGGTTGAAGATTGTAAGTCCTATCTC
258 GAAGATTCTGAGTCCTAACTCCCTGGCCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTC
*
12322292 CCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATT
323 CCTGGTCAGCAGTGGAATAGGTGAATCCTACCTCCCTGGTCACCAGTGGAATAGGTTGAAGATT
** *
12322356 GTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAA
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAA
12322396 AATTACAGAT
Statistics
Matches: 389, Mismatches: 33, Indels: 7
0.91 0.08 0.02
Matches are distributed among these distances:
384 1 0.00
385 279 0.72
386 108 0.28
387 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (386 bp):
GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATATCCCTGAGC
AGCAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAGAACAGATCGAAGA
CAGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGACTTATCTCTCTGG
TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAGTGGAATAGGTTGAA
GATTCTGAGTCCTAACTCCCTGGCCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT
GGTCAGCAGTGGAATAGGTGAATCCTACCTCCCTGGTCACCAGTGGAATAGGTTGAAGATT
Found at i:12322326 original size:34 final size:34
Alignment explanation
Indices: 12322283--12322347 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
12322273 AGATTGTAAG
*
12322283 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
1 TCCTATCTCCCTGGTCACCAGTGGAATAGGTGAA
12322317 TCCTATCTCCCTGGTCACCAGTGGAATAGGT
1 TCCTATCTCCCTGGTCACCAGTGGAATAGGT
12322348 TGAAGATTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTGGTCACCAGTGGAATAGGTGAA
Found at i:12322368 original size:78 final size:78
Alignment explanation
Indices: 12322239--12322391 Score: 236
Period size: 78 Copynumber: 2.0 Consensus size: 78
12322229 AGATTCTGAG
* **
12322239 TCCTATCTCCCTGGCCAACAGTGGAATTGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAG
1 TCCTATCTCCCTGGCCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGACCAGCAG
12322304 TGGAATAGGTGAA
66 TGGAATAGGTGAA
* *
12322317 TCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGACCAGCA
1 TCCTATCTCCCTGGCCAACAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGACCAGCA
*
12322381 GTGGAGTAGGT
65 GTGGAATAGGT
12322392 TGAAAATTAC
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
78 66 0.97
79 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (78 bp):
TCCTATCTCCCTGGCCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGACCAGCAG
TGGAATAGGTGAA
Found at i:12322412 original size:122 final size:122
Alignment explanation
Indices: 12322195--12323068 Score: 342
Period size: 122 Copynumber: 6.9 Consensus size: 122
12322185 AGATTGTAAG
* * *
12322195 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGCCAACAG
1 TCCTATCTCCCTAGTCACCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGACCAACAG
* *
12322260 TGGAATTGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
66 TGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
* * *
12322317 TCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAG
1 TCCTATCTCCCTAGTCACCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGACCAACAG
* * * * * *
12322382 TGGAGTAGGTTGAA-AAT-TACAGATCTTATCTCCCAAAGCAGTGGTGGAGTAGATCGAAGACGG
66 TGGAATAGGTTGAAGAATGTA-AG-TCCTATCT-CC----C--TGGT-CAGCAG-TGGAATA-GG
*
12322445 CGAA
119 TGAA
* * * ** * * * *** * * * **
12322449 TCTTACCTTCCCAAGGT-AGTAG-GGAAGAAGATGTAAGCCACT--AGCCTTGTCTCCTTCG-TG
1 TCCTATC-TCCCTA-GTCACCAGTGGAATAGGTTG-AAGATTCTGAATCC-TATCTCCCT-GACC
** * * * ** *
12322509 AGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAAGTCAGCAGTGAAATAGGTGAA
61 AACAGTGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
* ** * * ** **
12322571 TCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCTCTGGTCAGTAG
1 TCCTATCTCCCTAGTCACCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGACCAACAG
** * * ** * * *
12322636 TGTTATAGGTTGTAGATTACAAATCCTATCTCCCTGAG-CAGCAATGGAGTAGGTTGAAAA
66 TGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTG-GTCAGCAGTGGAATAGG-TG--AA
* ** * * * ** * *
12322696 TTACAGATCTTATCTCCCAAAG-CAGTAGTAGAGTAGATTGAAGACGGC-GATTCTTATCTTCCC
1 -T-C----C-TATCTCCC-TAGTCACCAGTGGAATAGGTTGAAGA-TTCTGAATCCTATC-TCCC
** * ** * * * * *
12322759 ATG-GTAGCAG-GGACGCAGATTTAAGCCA-CT-AG-CCTTATCTCCCTGGTCAGTAGTGGAATA
56 -TGACCAACAGTGGA-ATAGGTTGAAG-AATGTAAGTCC-TATCTCCCTGGTCAGCAGTGGAATA
12322819 GGTTGAAGATTGTAA
117 ----G--G--TG-AA
** * * **
12322834 GTCCTATCTCCCTAGTCAGAAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAACA
1 -TCCTATCTCCCTAGTCACCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGACCAACA
* * *
12322899 GTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACTGTGGAATAGGTGAA
65 GTGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
* * * ** * *
12322957 TCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGGTTATGAATCCTATCTCCCTGGTCAGCAA
1 TCCTATCTCCCTAGTCACCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGACCAACAG
* * *
12323022 TGGAATAGGTTGAAGATTGTGAA-TCCTATGTTCCTGAG-CAGCAGTGG
66 TGGAATAGGTTGAAGAATGT-AAGTCCTATCTCCCTG-GTCAGCAGTGG
12323069 CGTAGGTTGA
Statistics
Matches: 553, Mismatches: 140, Indels: 118
0.68 0.17 0.15
Matches are distributed among these distances:
120 4 0.01
121 18 0.03
122 240 0.43
123 17 0.03
124 6 0.01
125 4 0.01
126 2 0.00
127 3 0.01
128 1 0.00
129 4 0.01
130 6 0.01
131 33 0.06
132 167 0.30
133 33 0.06
134 6 0.01
136 1 0.00
137 1 0.00
138 4 0.01
139 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (122 bp):
TCCTATCTCCCTAGTCACCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGACCAACAG
TGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
Found at i:12322647 original size:298 final size:304
Alignment explanation
Indices: 12322312--12322953 Score: 875
Period size: 298 Copynumber: 2.1 Consensus size: 304
12322302 AGTGGAATAG
***
12322312 GTGAATCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACC
1 GTGAATCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTACAAATCCTATCTCCCTGACC
* * *
12322377 AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTGGTGGAGTAGATCGAAGA
66 AGCAATGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGA
* * *
12322442 CGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCTTGTCTCCTTCG
131 CGGCGAATCTTACCTTCCCAAGGTAGCAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCCCTCG
* *
12322507 TGAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAAGTCAGCAGTGAAATAGG-TG-A
196 TCAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAAGTCAGAAGTGAAATAGGTTGAA
* **
12322570 -A-TC-C-TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATT
261 GATTCGCTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATT
* ** ** * *
12322610 GTGAATCCTATCTCTCTGGTCAGTAGTGTTATAGGTTGTAGATTACAAATCCTATCTCCCTGAGC
1 GTGAATCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTACAAATCCTATCTCCCTGACC
*
12322675 AGCAATGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTAGATTGAAGA
66 AGCAATGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGA
* * * * * * *
12322740 CGGCGATTCTTATCTTCCCATGGTAGCAGGGACGCAGATTTAAGCCACTAGCCTTATCTCCCTGG
131 CGGCGAATCTTACCTTCCCAAGGTAGCAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCCCTCG
* * * *
12322805 TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGAAGTGGAATAGGTTGAA
196 TCAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAAGTCAGAAGTGAAATAGGTTGAA
12322870 GATTCTGAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATT
261 GATTC---G-CTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATT
* *
12322918 GT-AAGTCCTATCTCCCTGGTCAACTGTGGAATAGGT
1 GTGAA-TCCTATCTCCCTGGTCACCAGTGGAATAGGT
12322954 GAATCCTATC
Statistics
Matches: 294, Mismatches: 39, Indels: 12
0.85 0.11 0.03
Matches are distributed among these distances:
298 225 0.77
299 2 0.01
300 1 0.00
301 1 0.00
302 2 0.01
307 3 0.01
308 60 0.20
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (304 bp):
GTGAATCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTACAAATCCTATCTCCCTGACC
AGCAATGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGA
CGGCGAATCTTACCTTCCCAAGGTAGCAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCCCTCG
TCAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAAGTCAGAAGTGAAATAGGTTGAA
GATTCGCTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATT
Found at i:12322884 original size:88 final size:88
Alignment explanation
Indices: 12322571--12327078 Score: 921
Period size: 88 Copynumber: 52.4 Consensus size: 88
12322561 AATAGGTGAA
* * * * *
12322571 TCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCTCTGGTCAGTAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
** * ** *
12322636 TGTTATAGGTTGTAGATTACAAA
66 TGGAATAGGTTGAAGATTGTAAG
* * * * * **
12322659 TCCTATCTCCCTGAG-CAGCAATGGAGTAGGTTGAAAATTACAGA-TCTTATCTCCCAAAG-CAG
1 TCCTATCTCCCT-AGTCAGTAGTGGAATAGGTTGAAGATT-CTGAGTCTTATCTCCC-TGGTCAG
* * * ** ** *
12322721 TAGTAGAGTAGATTGAAGACGGCGAT
63 TAGTGGAATAGGTTGAAGATTGTAAG
* * * ** * * *** *
12322747 TCTTATCTTCCCATGGT-AGCAG-GGACGCAGATTTAAGCCACT-AGCCTTATCTCCCTGGTCAG
1 TCCTATC-TCCC-TAGTCAGTAGTGGA-ATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAG
12322809 TAGTGGAATAGGTTGAAGATTGTAAG
63 TAGTGGAATAGGTTGAAGATTGTAAG
* **
12322835 TCCTATCTCCCTAGTCAGAAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAACAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
12322900 TGGAATAGGTTGAAGATTGTAAG
66 TGGAATAGGTTGAAGATTGTAAG
* * **
12322923 TCCTATCTCCCTGGTCAACT-GTGGAATAGG-TG-A-A-TC-----C-TATCTCCCTGGTCACCA
1 TCCTATCTCCCTAGTC-AGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTA
* *
12322977 GTGGAATAGGTTGAAGGTTATGAA-
65 GTGGAATAGGTTGAAGATTGT-AAG
* * * * * * * * *
12323001 TCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTTCCTGAG-CAGCA
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTG-GTCAGTA
**
12323065 GTGGCGTAGGTTGAA-ATT-TACAG
65 GTGGAATAGGTTGAAGATTGTA-AG
* * * * * ** * *
12323088 ATCTTATCT-CTTAAAG-CAGTAGTGGAACA-GATAAAGACGGC-GAATCTTATCTTCCCAAGGT
1 -TCCTATCTCCCT--AGTCAGTAGTGGAATAGGTTGAAGA-TTCTGAGTCTTATC-TCCC-TGGT
* * * ****
12323149 -AGTAG-GGAAGAAGATTTAAGCCACT-AG
60 CAGTAGTGGAA-TAGGTTGAAGATTGTAAG
* * * * * * * *
12323176 -CCTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAACTCATATCTCCCAGGTCAGCA
1 TCC-TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTA
*
12323240 GT-GAA-A---T--AG-GTG-AA-
65 GTGGAATAGGTTGAAGATTGTAAG
* * * * * *
12323254 TCCTATCTCCCTTGTCAGTAGTGGAATAGGATGAAGATTGTGAATCCTATCTCCCTGGTCAGCAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
* *
12323319 TGTAATAGGTTGAAGATTATGAA-
66 TGGAATAGGTTGAAGATTGT-AAG
* * * * * * * * *
12323342 TCCTATCTCCCTGAG-CAGCAGTGCAGTAAGTTGAAAATTACAGA-TCGTATCTCTCTAAGT-AG
1 TCCTATCTCCCT-AGTCAGTAGTGGAATAGGTTGAAGATT-CTGAGTCTTATCTCCCT-GGTCAG
** ** * * ** ** *
12323404 TAGCAGAGCAGATCGAAGACGGCGAT
63 TAGTGGAATAGGTTGAAGATTGTAAG
* * * * * * *** * *
12323430 TCTTATATTCCCAAG-CTGGTAG-GGAAGCAGATTTG-AGCCACT-AGCCTTATCTCCCTGGTAA
1 TCCTAT-CTCCCTAGTC-AGTAGTGGAA-TAG-GTTGAAGATTCTGAGTCTTATCTCCCTGGTCA
* * * * *
12323491 GTAATGGAACATGTTGAAGGTTATAAG
62 GTAGTGGAATAGGTTGAAGATTGTAAG
* * * * **
12323518 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
12323583 TGGAATA----G--G--TG-AA-
66 TGGAATAGGTTGAAGATTGTAAG
* * * * * * *
12323596 TCCAATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCCTATCTCCCTGAG-CAGCA
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTG-GTCAGTA
*
12323660 GTGGAGA-AGGTTGAA-AAT-TACAG
65 GTGGA-ATAGGTTGAAGATTGTA-AG
* * ** * * ** * * *
12323683 ACCTTATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGC-GATTCCTATCTTCCCAAGGT-
1 TCC-TATCTCCCT-AGTCAGTAGTGGAATAGGTTGAAGA-TTCTGAGTCTTATC-TCCC-TGGTC
* * * ****
12323745 AGTAG-GGAAGAAGATTTAAGCCACT-AG
61 AGTAGTGGAA-TAGGTTGAAGATTGTAAG
* * * * ** * *
12323772 -CCTTATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTGTTAGTGATATCTCCGTGGTCAGCA
1 TCC-TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTA
*
12323836 GT-GAA-A---T--AG-GTG-AA-
65 GTGGAATAGGTTGAAGATTGTAAG
* * * * *
12323850 TCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCTTATCTCCATGGTCAGCAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
*
12323915 TGTAATAGGTTGAAGATTGTGAA-
66 TGGAATAGGTTGAAGATTGT-AAG
* * * * * *
12323938 TCCTATCTCCCTAAG-CAGCAGTGGAGTAGGTTGAAAATTAT-AGATCCTATCTCCCTAAG-CAG
1 TCCTATCTCCCT-AGTCAGTAGTGGAATAGGTTGAAGATTCTGAG-TCTTATCTCCCT-GGTCAG
* * * * ** *
12324000 TAGTGGAGTAGATCGAAGATGGCGAT
63 TAGTGGAATAGGTTGAAGATTGTAAG
* * ** * * *** *
12324026 TCTTATCTTTCGAAGGT-AGTAG-GGAAGCAGATAT-AAGCCACT-AGCCTTATCTCCCTGGTCA
1 TCCTATC-TCCCTA-GTCAGTAGTGGAA-TAGGT-TGAAGATTCTGAGTCTTATCTCCCTGGTCA
12324087 GTAGTGGAATAGGTTGAAGATTGTAAG
62 GTAGTGGAATAGGTTGAAGATTGTAAG
* * * * * * **
12324114 TCGTATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCGTATCTCCCTGGTCAACAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
*
12324179 TGGAGTAGGTTGAAGATTGTAAG
66 TGGAATAGGTTGAAGATTGTAAG
* * * * * ** *
12324202 TCCAATCTCCTTGGTCTGCAGTGGAATAGG-TG--GA---T---TC-TATCTCCCTGGTTGGCAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
12324257 TGGAATAGGTTGAAGATTGTGAA-
66 TGGAATAGGTTGAAGATTGT-AAG
* * * * * **
12324280 TCCTATCTCCCTAAGT-AGCAGTAGAGTAGGTTGAAAATTACAGA-TCTTATCTCCCAAAG-CAG
1 TCCTATCTCCCT-AGTCAGTAGTGGAATAGGTTGAAGATT-CTGAGTCTTATCTCCC-TGGTCAG
** * * ** *
12324342 TAGTGGAGCAGATCGAAGACGGCGAATG
63 TAGTGGAATAGGTTGAAGATTG-TAA-G
* ** * * * *** *
12324370 T--TATCTTCCCAAGGAAGTAG-GGAAGAAGATTTAAGCCACT-AGCCTTATCTCCCTGGTCAGT
1 TCCTATC-TCCCTAGTCAGTAGTGGAA-TAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGT
12324431 AGTGGAATAGGTTGAAGATTGTAAG
64 AGTGGAATAGGTTGAAGATTGTAAG
* * * * * * * * *
12324456 TCATATCTCCCTGGTCTGCAGTGAAATA-G--G-AGA--AT-A--CTT-TGTCCCTTGTCAGTAC
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
* *
12324511 TGGAATAGGTTGAAGATTATGAG
66 TGGAATAGGTTGAAGATTGTAAG
* * * * * * * *
12324534 TCCTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTCGTCAATAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
* *
12324599 TGAAATAGGTTGAAAATTGTGAA-
66 TGGAATAGGTTGAAGATTGT-AAG
* * * * * * *
12324622 TCCTAGCTCCCTGAG-CAGCAGTGGAGTAGGTTAAAAATTACAGAAG--TTATCTCCCTAAG-CA
1 TCCTATCTCCCT-AGTCAGTAGTGGAATAGGTTGAAGATT-CTG-AGTCTTATCTCCCT-GGTCA
* * * * * * *
12324683 GTAGTAGAGTAGATCGAAG-TGGCGAAT
62 GTAGTGGAATAGGTTGAAGATTG-TAAG
** * * * * *** * *
12324710 TTTTAT-TCCCAAGGT-AGTAG-GGAAGCAGATTTAAGGCACT-AG-CGTTATCTTCCTGGTTAG
1 TCCTATCTCCCTA-GTCAGTAGTGGAA-TAGGTTGAAGATTCTGAGTC-TTATCTCCCTGGTCAG
*
12324770 TAGTGGAATAGGTTGACGATTGTAAG
63 TAGTGGAATAGGTTGAAGATTGTAAG
* * * * * ** * *
12324796 TCCTATCTCCCTAGTCAGCAGTGGAATAGGCTGAAAATTTTGAATCCAATATCCCTGAG-CAGCA
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTG-GTCAGTA
* *
12324860 GTGGAGTAGGTTGCAA-ATTAT-AG
65 GTGGAATAGGTTG-AAGATTGTAAG
** * ** * * ** * *
12324883 ATATTATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGC-GATTCTTATCTTCCCAAGGT-
1 -TCCTATCTCCCT-AGTCAGTAGTGGAATAGGTTGAAGA-TTCTGAGTCTTATC-TCCC-TGGTC
* * * **
12324945 AGTAG-GGAAGTAGATTTAAGCTACT-AG
61 AGTAGTGGAA-TAGGTTGAAGATTGTAAG
* * * * *
12324972 -CCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCA
1 TCC-TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTA
* *
12325036 GCGGGATAGGTTGAAGATTG-AGAG
65 GTGGAATAGGTTGAAGATTGTA-AG
* * * ** * * * * * *
12325060 ACTTATCTCCCTGGTCAACAATAGAATAGGTTTAAGATTGTAAGTAC-TATCTCCCTGGTCAGCA
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGT-CTTATCTCCCTGGTCAGTA
*
12325124 ATGGAATA----G--G--TG-AA-
65 GTGGAATAGGTTGAAGATTGTAAG
* * * * * * ** * * *
12325138 TCATATCTCCCTGGTCAGCAGTGGACTTGGTTAAAGATTGGGAATCTTATCTCCCTGGTCAGCAA
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
* *
12325203 TGGAATAGGTTGAAGACTGCGAA-
66 TGGAATAGGTTGAAGATTG-TAAG
* * * * * * * ***
12325226 TCCAATGTCCTTGAG-CAGCAGTGGAGTAGGTTGAAAATTACAGA-TCTTATCTTCCAAAG-CAG
1 TCCTATCTCCCT-AGTCAGTAGTGGAATAGGTTGAAGATT-CTGAGTCTTATC-TCCCTGGTCAG
** ** * ** ** *
12325288 TAGTGGAGCAAATCGAAGACGGCGAT
63 TAGTGGAATAGGTTGAAGATTGTAAG
* * * * * ** * ** * * **
12325314 TCTTATCTGCCCAAGGT-AGTAG-GGAAACAGATTTAAGACACTG-GCCTTATAACTCTGTTCTT
1 TCCTATCT-CCCTA-GTCAGTAGTGG-AATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAG
*
12325376 TAGTGGAATAGGTTGAAGATTTTAAG
63 TAGTGGAATAGGTTGAAGATTGTAAG
* * * * * *
12325402 TCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGCCAGCAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
12325467 TGGAATAGGTTGAAGATCT-TAAG
66 TGGAATAGGTTGAAGAT-TGTAAG
* * * *
12325490 -CCTTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGCCAGCA
1 TCC-TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTA
12325554 GTGGAATAGGTTGAAGATTGTAAG
65 GTGGAATAGGTTGAAGATTGTAAG
* * * * *
12325578 TCCTATCTCCCTGGTCAGCAATGGAATAGG-TG-A-A-TC-----C-TATCTCCCTAGTCAGCAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
*
12325633 TGGAATAGGTTAAAGATTGTGAA-
66 TGGAATAGGTTGAAGATTGT-AAG
* * * * * * *
12325656 TCCTGTCTCCCTGAG-CAGTAGTGTAGTAGGTTGAAAATTACAGA-TTTTATCTCCCTAAG-CAG
1 TCCTATCTCCCT-AGTCAGTAGTGGAATAGGTTGAAGATT-CTGAGTCTTATCTCCCT-GGTCAG
* ** * * ** *
12325718 TAGTTGAGCAGATCGAAGACAGCGAA-
63 TAGTGGAATAGGTTGAAGATTG-TAAG
** * * * * *** * *
12325744 TATTATCTTCCCGAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AGCCTTATCTCCCTGGTCGG
1 TCCTATC-TCCCTA-GTCAGTAGTGGAA-TAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAG
12325806 TAGTGGAATAGGTTGAAGATTGTAAG
63 TAGTGGAATAGGTTGAAGATTGTAAG
* * * * ** **
12325832 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCAATCTCCCTGAG-CAACA
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTG-GTCAGTA
*
12325896 GTGGAGA-AGGTTGAA-AAT-TACAG
65 GTGGA-ATAGGTTGAAGATTGTA-AG
* * * ** * ** * ** * **
12325919 ATCTTATCTCCCTAAG-CAGTTGTAGAGCAGATCAAACACGGCT-ATTCTTATCTTACCAAGGT-
1 -TCCTATCTCCCT-AGTCAGTAGTGGAATAGGTTGAAGA-TTCTGAGTCTTATC-T-CCCTGGTC
* * * * **
12325981 AGTA-AGGAAGTAGATTTAAGCTACT-AG
61 AGTAGTGGAA-TAGGTTGAAGATTGTAAG
* * * * * * *
12326008 -CCTTATTTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCATGGTCAGCA
1 TCC-TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTA
* **
12326072 GTGGAATAGATTGAAGATTGCGAG
65 GTGGAATAGGTTGAAGATTGTAAG
* * * * * *
12326096 TCCTATCTCCCTCA-TCAATAGTGAAATAGGTTGAAAATTGTGAATCCTT-GCTCCCTGAG-CAG
1 TCCTATCTCCCT-AGTCAGTAGTGGAATAGGTTGAAGATTCTGAGT-CTTATCTCCCTG-GTCAG
* * *
12326158 TAGTGGAGTAGGTTAAAAATTACAG-AAG
63 TAGTGGAATAGGTTGAAGATT---GTAAG
** * ** * * ** * * *
12326186 T--TATCTCCCTAACCAGTAGTAGAGCAGATTAAAGACGGC-GAATCATATCTTCCCAAGGT-AG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGA-TTCTGAGTCTTATC-TCCC-TGGTCAG
* * * * ***
12326247 TA-AGGAAGCAGATTTAAGACACT-AG
63 TAGTGGAA-TAGGTTGAAGATTGTAAG
* * * * * * * * * *
12326272 -CCTTATCTTCCTGGTCAGTAGTGGAATAGGTAGACGATTGTAAGTCCTGTCTCCCTAGTCAGCA
1 TCC-TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTA
* *
12326336 GTGGAATAGGCTGAAAATTGTGAA-
65 GTGGAATAGGTTGAAGATTGT-AAG
* * * * *
12326360 TCCTATATCCCTGAG-CAGCAGTGGAGTAGGTTGCAA-ATTAT-AGATCTTATCTCCCTAAG-CA
1 TCCTATCTCCCT-AGTCAGTAGTGGAATAGGTTG-AAGATTCTGAG-TCTTATCTCCCT-GGTCA
* ** * * ** ** *
12326421 GTAGTAGAGCAGATCGAAGACGGCGAT
62 GTAGTGGAATAGGTTGAAGATTGTAAG
* * * * *** * * * *
12326448 TCTTATCTTCCCAAGGT-AGTAG-GGAAGTAGATTTAAGCCACT-AGCCTTATCTTCATGGTTAG
1 TCCTATC-TCCCTA-GTCAGTAGTGGAA-TAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAG
*
12326510 TAGGGGAATAGGTTGAAGATTGTAAG
63 TAGTGGAATAGGTTGAAGATTGTAAG
* * * * * * * **
12326536 TCCTATCTCCCTGGTCAGCAGTGGGATAGGTTAAAGATTGTGAGTCTTATCTCTCTTGTCAACAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
12326601 TGGAATAGGTTGAAGATTGTAAG
66 TGGAATAGGTTGAAGATTGTAAG
* * * * * *
12326624 TACTATCTCCCTGGTAAGCAATGGAATAGG-TG-A-A-TC--A----TATCTCCCTGGTCAGCAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
* *
12326679 TGGACTTGGTTGAAGATTGTGAA-
66 TGGAATAGGTTGAAGATTGT-AAG
* * * ** * * **
12326702 TCCTATCTCCCTAGTCAGCAATAGAATAGGTTGAAGATTGGGAATCCTATCTCCCTGACCAGTAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
* *
12326767 TGGAGTAGGTTGAA-AAT-TACAG
66 TGGAATAGGTTGAAGATTGTA-AG
* * ** * * * * * *
12326789 ATCTTATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGATGGC-GAATCTTACCTTCCTAAGGT-
1 -TCCTATCTCCC-TAGTCAGTAGTGGAATAGGTTGAAGAT-TCTGAGTCTTATCTCCCT--GGTC
* *** ****
12326851 AGTAG-GGAAGAAAATGTAAGCCACTAA-
61 AGTAGTGGAATAGGTTG-AAGATTGTAAG
* * * * * *
12326878 -CCTTATCTCCTTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCA
1 TCC-TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTA
*
12326942 GT-GAA-A---T--AG-GTG-AA-
65 GTGGAATAGGTTGAAGATTGTAAG
* * * ** *
12326956 TCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCAATCTCCCTGGTCAGCAG
1 TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
* *
12327021 TGTAATAAGTTGAAGATTGTGAA-
66 TGGAATAGGTTGAAGATTGT-AAG
* * *
12327044 TCCTATCTCCCTGAG-CAGCAGTGGAGTGGGTTGAA
1 TCCTATCTCCCT-AGTCAGTAGTGGAATAGGTTGAA
12327079 AATTATAGAT
Statistics
Matches: 3131, Mismatches: 946, Indels: 686
0.66 0.20 0.14
Matches are distributed among these distances:
77 2 0.00
78 582 0.19
79 46 0.01
80 16 0.01
81 7 0.00
82 14 0.00
83 7 0.00
84 11 0.00
85 19 0.01
86 97 0.03
87 309 0.10
88 1765 0.56
89 232 0.07
90 19 0.01
91 5 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (88 bp):
TCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAGTAG
TGGAATAGGTTGAAGATTGTAAG
Found at i:12322961 original size:298 final size:296
Alignment explanation
Indices: 12322198--12322991 Score: 838
Period size: 298 Copynumber: 2.7 Consensus size: 296
12322188 TTGTAAGTCC
* * * * *
12322198 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGCCA-ACAGTG
1 TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGA-AGTG
* *
12322262 GAATTGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AAT
65 GAATAGGTTGAAGATTCT-AGT-CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAT
* * *
12322318 CCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGT
128 CCTATCTCCCTGGTCAACTGTGG-A-A---T--AG--TGTGAATCCTATCTCCCTGAGCAGCAGT
* *
12322383 GGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTGGTGGAGTAGATCGAAGACGGCGA
184 GGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGACGGCGA
*
12322448 ATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCT
249 ATCTTACCTTCCCAAGGTAGCAGGGAAGAAGATGTAAGCCACTAGCCT
* * * * * * * * *
12322496 TGTCTCCTTCGTGAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAAGTCAGCAGTGA
1 TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGAAGTGG
* *
12322561 AATAGG-TG-A-A-TC----CTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCC
66 AATAGGTTGAAGATTCTAGTCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AATCC
* * ** *
12322618 TATCTCTCTGGTC-AGTAGTGTTATAGGTTGTAGATTACAAATCCTATCTCCCTGAGCAGCAATG
130 TATCTCCCTGGTCAACT-GTGGAATA-G-TGT-G------AATCCTATCTCCCTGAGCAGCAGTG
* *
12322682 GAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTAGATTGAAGACGGCGAT
185 GAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGACGGCGAA
* * * * *
12322747 TCTTATCTTCCCATGGTAGCAGGGACGCAGATTTAAGCCACTAGCCT
250 TCTTACCTTCCCAAGGTAGCAGGGAAGAAGATGTAAGCCACTAGCCT
*
12322794 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGAAGTGG
1 TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGAAGTGG
*
12322859 AATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGT
66 AATAGGTTGAAGATTCT-AGTC-TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAA-T
* *
12322924 CCTATCTCCCTGGTCAACTGTGGAATAG-GTGAATCCTATCTCCCTG-GTCACCAGTGGAATAGG
128 CCTATCTCCCTGGTCAACTGTGGAATAGTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGG
12322987 TTGAA
192 TTGAA
12322992 GGTTATGAAT
Statistics
Matches: 408, Mismatches: 55, Indels: 66
0.77 0.10 0.12
Matches are distributed among these distances:
288 24 0.06
291 5 0.01
292 3 0.01
293 1 0.00
294 2 0.00
295 1 0.00
296 4 0.01
297 3 0.01
298 294 0.72
299 2 0.00
300 1 0.00
301 1 0.00
302 2 0.00
304 1 0.00
305 2 0.00
307 4 0.01
308 56 0.14
309 2 0.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (296 bp):
TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGAAGTGG
AATAGGTTGAAGATTCTAGTCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAATCCT
ATCTCCCTGGTCAACTGTGGAATAGTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGA
AAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGACGGCGAATCTTACCTTCC
CAAGGTAGCAGGGAAGAAGATGTAAGCCACTAGCCT
Found at i:12322966 original size:34 final size:34
Alignment explanation
Indices: 12322923--12322987 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
12322913 AGATTGTAAG
*
12322923 TCCTATCTCCCTGGTCAACTGTGGAATAGGTGAA
1 TCCTATCTCCCTGGTCAACAGTGGAATAGGTGAA
*
12322957 TCCTATCTCCCTGGTCACCAGTGGAATAGGT
1 TCCTATCTCCCTGGTCAACAGTGGAATAGGT
12322988 TGAAGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (34 bp):
TCCTATCTCCCTGGTCAACAGTGGAATAGGTGAA
Found at i:12323011 original size:78 final size:78
Alignment explanation
Indices: 12322882--12323031 Score: 230
Period size: 78 Copynumber: 1.9 Consensus size: 78
12322872 TTCTGAGTCT
* **
12322882 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACTGTGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAACAATGG
12322947 AATAGGTGAATCC
66 AATAGGTGAATCC
* * *
12322960 TATCTCCCTGGTCACCAGTGGAATAGGTTGAAGGTTATGAA-TCCTATCTCCCTGGTCAGCAATG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTAT-AAGTCCTATCTCCCTGGTCAACAATG
12323024 GAATAGGT
65 GAATAGGT
12323032 TGAAGATTGT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
78 63 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (78 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAACAATGG
AATAGGTGAATCC
Found at i:12323096 original size:298 final size:298
Alignment explanation
Indices: 12322880--12324232 Score: 1656
Period size: 298 Copynumber: 4.5 Consensus size: 298
12322870 GATTCTGAGT
** * * *
12322880 CTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACTGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
* *
12322945 GGAATAGGTGAATCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGGTTATGAATCCTATCTC
66 GGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTC
* * * *
12323010 CCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTTCCTGAGCAGCAGTGGCGTAGG
131 CCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
* * * * *
12323075 TTGAAATTTACAGATCTTATCT-CTTAAAGCAGTAGTGGAACAGAT-AAAGACGGCGAATCTTAT
196 TTGAAAATTACAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGACGGCGATTCTTAT
*
12323138 CTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
260 CTTCCCAAGGTAGTAGGGAAGAAGATTGAAGCCACTAGC
* * * *
12323177 CTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAACTCATATCTCCCAGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
* * * * *
12323242 GAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGATGAAGATTGTGAATCCTATCTC
66 GGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTC
* * * *
12323307 CCTGGTCAGCAGTGTAATAGGTTGAAGATTATGAATCCTATCTCCCTGAGCAGCAGTGCAGTAAG
131 CCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
* * * ** *
12323372 TTGAAAATTACAGATCGTATCTCTCTAAGTAGTAGCAGAGCAGATCGAAGACGGCGATTCTTATA
196 TTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGATTCTTATC
* * *
12323437 TTCCCAAGCTGGTAGGGAAGCAGATTTG-AGCCACTAGC
261 TTCCCAAGGTAGTAGGGAAGAAGA-TTGAAGCCACTAGC
* * * * * * *
12323475 CTTATCTCCCTGGTAAGTAATGGAACATGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
*
12323540 GGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATA----G--G----TGA
66 GGAATAGG-T---GA-----A-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGA
* * *
12323595 ATCCAATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCCTATCTCCCTGAGCAGCA
121 ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCA
* * *
12323660 GTGGAGAAGGTTGAAAATTACAGACCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGC
186 GTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGC
* *
12323725 GATTCCTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
251 GATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTGAAGCCACTAGC
* * * *
12323773 CTTATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTGTTAGTGATATCTCCGTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
* * * *
12323838 GAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCTTATCTC
66 GGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTC
* * *
12323903 CATGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGG
131 CCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
* * * *
12323968 TTGAAAATTATAGATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGATTCTTATC
196 TTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGATTCTTATC
* * *
12324033 TTTCGAAGGTAGTAGGGAAGCAGATAT-AAGCCACTAGC
261 TTCCCAAGGTAGTAGGGAAGAAGAT-TGAAGCCACTAGC
*
12324071 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCGTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
* * * *
12324136 GGAATAGGTTGACGATTGTGAGTCGTATCTCCCTGGTCAACAGTGGAGTAGGTTGAAGATTGT-A
66 GGAATAGG-T---GA-----A-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGA
* * *
12324200 AGTCCAATCTCCTTGGTCTGCAGTGGAATAGGT
121 A-TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
12324233 GGATTCTATC
Statistics
Matches: 899, Mismatches: 121, Indels: 61
0.83 0.11 0.06
Matches are distributed among these distances:
288 25 0.03
289 1 0.00
292 1 0.00
294 3 0.00
297 209 0.23
298 559 0.62
299 5 0.01
302 5 0.01
304 1 0.00
307 4 0.00
308 86 0.10
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (298 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
GGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTC
CCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
TTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGATTCTTATC
TTCCCAAGGTAGTAGGGAAGAAGATTGAAGCCACTAGC
Found at i:12323139 original size:981 final size:975
Alignment explanation
Indices: 12321332--12324589 Score: 3152
Period size: 981 Copynumber: 3.4 Consensus size: 975
12321322 TTGAAGATTA
** * *
12321332 TGAATCCTATCT-CCTAGGTCATTAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAACC
1 TGAATCCTATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAACC
* *
12321396 AGCAGTGGAGTAGGTTGAAATTTACAGATCTTATCTCCTAAAGCAGTAGTGGAGCAGATCGAAGA
65 AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGA
* *
12321461 CGACGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCCTTGG
130 CGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCCCTGG
*
12321526 TCAGTATAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAAT
195 TCAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAAT
*
12321591 CCTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCT-G--AGC---
260 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGT
12321650 -----A-G-T--AG-------------------T--G--G-AGT-----AGGTTGAAAATTACAG
325 GTAATAGGTTGAAGATTACAAATCCTATCTCCCTGAGCAGCAGTGGAGAAGGTTGAAAATTACAG
* * * * * *
12321677 ATCCTATCTCCCTATGCAGTAGTAGAGCAGATCGAAGACAGCGATTCTTATCTTTCCAAGGTAGT
390 ATCTTATCTCCC-AAGCAGTAGTAGAG-AGAT-GAAGACGGCGATTC-TATCTTCCCATGGTAGC
* * * *
12321742 AGGGAAGTAGATTTCAGCCACTAGCCTTATCTCTCTGGTTAGTAGTGGAATAGGTTGAAGATTGT
451 AGGGACGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTGT
* * * *
12321807 AAGTCATATCTCCCTAGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTAACTTCCTGGTCAA
516 AAGTCATATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGT-CTATCTCCCTGGTCAA
* *
12321872 CAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTC
580 CAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAAC-GTGGAATAGGTGAATCCTA
* * *
12321937 CCTCCCTGGTCACTAGTGGAATGGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAA
644 TCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAA
*
12322002 TAGGTTGAAGATTGTGAATCCTATGATCCTGAGCAGCAGTGGAGTAGGTTGAAATTTACAGATCT
709 TAGGTTGAAGATTGTGAATCCTATGTTCCTGAGCAGCAGTGGAGTAGGTTGAAATTTACAGATCT
*
12322067 TATCTCTTAAAGCTGTAGTGGAACAGATGAAGAAGGCGAATCTTATCTTCCCAAGGTAGTAGGGA
774 TATCTCTTAAAGCAGTAGTGGAACAGAT--AGAA---G------A------C-----------G-
* * *
12322132 AGAAGATTTAAGCCACTAGACTTATCTCTCTGGTCAGTAGTGGATTAGGTTGAAGATTGTAAGTC
810 -G-CG-----A---A-T---CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
12322197 CTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGCCAACAGTG
861 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCATATCTCCCTGGTCAACAGTG
12322262 GAATTGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGG
926 GAA-TGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGG
* *
12322313 TGAATCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCA
1 TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAACCA
* *
12322378 GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTGGTGGAGTAGATCGAAGAC
66 GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAC
* * *
12322443 GGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCTTGTCTCCTTCGT
131 GGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCCCTGGT
* **
12322508 GAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAAGTCAGCAGTGAAATAGGTGAATC
196 CAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATC
* * * *
12322573 CTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCTCTGGTCAGTAGTG
261 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG
* * * *
12322638 TTATAGGTTGTAGATTACAAATCCTATCTCCCTGAGCAGCAATGGAGTAGGTTGAAAATTACAGA
326 TAATAGGTTGAAGATTACAAATCCTATCTCCCTGAGCAGCAGTGGAGAAGGTTGAAAATTACAGA
12322703 TCTTATCTCCCAAAGCAGTAGTAGAGTAGATTGAAGACGGCGATTCTTATCTTCCCATGGTAGCA
391 TCTTATCTCCC-AAGCAGTAGTAGAG-AGA-TGAAGACGGCGATTC-TATCTTCCCATGGTAGCA
*
12322768 GGGACGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTA
452 GGGACGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTGTA
* *
12322833 AGTCCTATCTCCCTAGTCAGAAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAAC
517 AGTCATATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTC-TATCTCCCTGGTCAAC
12322898 AGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACTGTGGAATAGGTGAATCCTAT
581 AGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAAC-GTGGAATAGGTGAATCCTAT
* *
12322963 CTCCCTGGTCACCAGTGGAATAGGTTGAAGGTTATGAATCCTATCTCCCTGGTCAGCAATGGAAT
645 CTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAAT
*
12323028 AGGTTGAAGATTGTGAATCCTATGTTCCTGAGCAGCAGTGGCGTAGGTTGAAATTTACAGATCTT
710 AGGTTGAAGATTGTGAATCCTATGTTCCTGAGCAGCAGTGGAGTAGGTTGAAATTTACAGATCTT
*
12323093 ATCTCTTAAAGCAGTAGTGGAACAGATA-AAGACGGCGAATCTTATCTTCCCAAGGT-AGTAG-G
775 ATCTCTTAAAGCAGTAGTGGAACAGATAGAAGACGGCGAATCTTATC-TCCC-TGGTCAGTAGTG
* * * **** * * * *
12323155 GAAGAAGATTTAAGCCACT-AG-CCTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTA
838 GAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTG
* * * * * * *
12323218 ACTCATATCTCCCAGGTCAGCAGT-GAA---AT--AG-GTG-AA-TCCTATCTCCCTTGTCAGTA
901 AGTCATATCTCCCTGGTCAACAGTGGAATGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCA
12323274 GTGGAATAGGATGAAGATTG
966 GTGG---A--AT--AG---G
* * * *
12323294 TGAATCCTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTATGAATCCTATCTCCCTGAGCA
1 TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAACCA
* * * * * * **
12323359 GCAGTGCAGTAAGTTGAAAATTACAGATCGTATCTCTCTAAGTAGTAGCAGAGCAGATCGAAGAC
66 GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAC
* ** * * * * *
12323424 GGCGATTCTTATATTCCCAAGCTGGTAGGGAAGCAGATTTGAGCCACTAGCCTTATCTCCCTGGT
131 GGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCCCTGGT
* * * * * *
12323489 AAGTA-ATGGAACATGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAA
196 CAGTAGA-GGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT-GAA-A---T--A
* * *
12323553 GATTGTGAGTCCTATCTCCCTGGTCAACAGTGG-A-A---T--AG---GTGAATCCAATCTCCCT
253 G---GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCT
* * *** *
12323608 GGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCCTATCTCCCTGAGCAGCAGTGGAGAAGGTTG
315 GGTCAGCAGTGTAATAGGTTGAAGATTACAAATCCTATCTCCCTGAGCAGCAGTGGAGAAGGTTG
*
12323673 AAAATTACAGACCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCCTATCTTC
380 AAAATTACAGATCTTATCTCCC-AAGCAGTAGTAGAG-AGAT-GAAGACGGCGATT-CTATCTTC
* * * *
12323738 CCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTTAGTAGTGGAATAGGT
441 CCATGGTAGCAGGGACGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTTAGTAGTGGAATAGGT
* * * * *
12323803 TGAAGATTGTTAGTGATATCTCCGTGGTCAGCAGTGAAATAGG-TG-A-A-TC-----CTATCTC
506 TGAAGATTGTAAGTCATATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCTATCTC
* **
12323859 CCTTGTCAGTAGTGGAATA----G--G-TTG--A-----A--------G---A--T----TA--T
571 CCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACGTGGAATAGGT
* * * * *
12323891 GAATCTTATCTCCATGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAG-CA
636 GAATCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCT-GGTCA
* * * * * * * * * *
12323955 GCAGTGGAGTAGGTTGAAAATTATAG-ATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGA
700 GCAATGGAATAGGTTGAAGATTGT-GAATCCTATGTTCCTGAGCAGCAGTGGAGTAGGTTGAA-A
** * * * * * * ** * **
12324019 -TGGCGA-TTCTTATCTTTCGAAGGTAGTAG-GGAAGCAGATATAAG-CCACTAGCCTTATCTCC
763 TTTAC-AGATCTTATCTCT-TAAAGCAGTAGTGGAA-CAGATAGAAGACGGCGAATCTTATCTCC
*
12324080 CTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCGTATCTCCCTGGTCAGCAGTGGAATAGGT
825 CTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGT
* * * * *
12324145 TGACGATTGTGAGTCGTATCTCCCTGGTCAACAGTGGAGTAGGTTGAAGATTGTAAGTCCAATCT
890 TGAAGATTCTGAGTCATATCTCCCTGGTCAACAGTGGAAT-GGTTGAAGATTGTAAGTCCTATCT
* *
12324210 CCTTGGTCTGCAGTGGAATAGG
954 CCCTGGTCAGCAGTGGAATAGG
* * ** **
12324232 TGGATTCTATCTCCCTGGTTGGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGTA
1 TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAACCA
*
12324297 GCAGTAGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAC
66 GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAC
* * * *
12324362 GGCGAATGTTATCTTCCCAAGGAAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGT
131 GGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCCCTGGT
* * * *
12324427 CAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCTGCAGTGAAATAGGAGAATA
196 CAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATC
* * * * * * *
12324492 CTTTGTCCCTTGTCAGTACTGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTG
261 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG
***
12324557 TAATAGGTTGAAGATTGTGAATCCTATCTCCCT
326 TAATAGGTTGAAGATTACAAATCCTATCTCCCT
12324590 CGTCAATAGT
Statistics
Matches: 1922, Mismatches: 249, Indels: 255
0.79 0.10 0.11
Matches are distributed among these distances:
928 20 0.01
929 1 0.00
930 1 0.00
931 2 0.00
933 2 0.00
935 2 0.00
936 4 0.00
937 140 0.07
938 355 0.18
939 8 0.00
941 2 0.00
943 4 0.00
945 3 0.00
946 3 0.00
947 2 0.00
948 19 0.01
949 1 0.00
957 1 0.00
962 1 0.00
964 3 0.00
965 1 0.00
967 1 0.00
971 44 0.02
972 3 0.00
973 2 0.00
974 3 0.00
976 3 0.00
977 2 0.00
978 3 0.00
979 1 0.00
980 9 0.00
981 789 0.41
982 24 0.01
983 4 0.00
984 5 0.00
985 1 0.00
986 2 0.00
988 3 0.00
989 1 0.00
990 1 0.00
991 25 0.01
992 1 0.00
993 2 0.00
994 2 0.00
996 3 0.00
1007 1 0.00
1013 1 0.00
1015 1 0.00
1017 1 0.00
1019 2 0.00
1020 2 0.00
1022 2 0.00
1023 1 0.00
1024 1 0.00
1025 400 0.21
1026 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (975 bp):
TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAACCA
GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAC
GGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCCCTGGT
CAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATC
CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG
TAATAGGTTGAAGATTACAAATCCTATCTCCCTGAGCAGCAGTGGAGAAGGTTGAAAATTACAGA
TCTTATCTCCCAAGCAGTAGTAGAGAGATGAAGACGGCGATTCTATCTTCCCATGGTAGCAGGGA
CGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTGTAAGTC
ATATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCTATCTCCCTGGTCAACAGTGG
AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACGTGGAATAGGTGAATCCTATCTCCCT
GGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTG
AAGATTGTGAATCCTATGTTCCTGAGCAGCAGTGGAGTAGGTTGAAATTTACAGATCTTATCTCT
TAAAGCAGTAGTGGAACAGATAGAAGACGGCGAATCTTATCTCCCTGGTCAGTAGTGGAATAGGT
TGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCATATCT
CCCTGGTCAACAGTGGAATGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGG
Found at i:12323248 original size:683 final size:679
Alignment explanation
Indices: 12322154--12323592 Score: 2073
Period size: 683 Copynumber: 2.1 Consensus size: 679
12322144 CCACTAGACT
* * * * * *
12322154 TATCTCTCTGGTCAGTAGTGGATTAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGG
* *
12322219 AATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGCCAACAGTGGAATTGGTTGAAGATTGTAAGT
66 AATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGCCAACAGTGGAA----TT-AAGAGTGTAAGT
* *
12322284 CCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCACCAGTGGAATAGGTT
126 CCTATCTCCCTGGTCACCAGTGGAATAGGTGAATCCTATCTCCCTGGTCACCAATGGAATAGGTT
12322349 GAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTC
191 GAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTC
* ** *
12322414 CCAAAGCAGTGGTGGAGTAGATCGAAGACGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAG
256 CCAAAGCAGTAGTGGAACAGATCAAAGACGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAG
* * *
12322479 ATGTAAGCCACTAGCCTTGTCTCCTTCGTGAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATC
321 ATGTAAGCCACTAGCCTTATCTCCTTCGTCAGTAGAGGAATAGGTTGAAGATTGTAACTCATATC
*
12322544 TCCCAAGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGAT
386 TCCCAAGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGATGAAGAT
* * * *
12322609 TGTGAATCCTATCTCTCTGGTCAGTAGTGTTATAGGTTGTAGATTACAAATCCTATCTCCCTGAG
451 TGTGAATCCTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTACAAATCCTATCTCCCTGAG
* * * * * *
12322674 CAGCAATGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTAGATTGAAG
516 CAGCAATGCAGTAAGTTGAAAATTACAGATCGTATCTCCCAAAGCAGTAGCAGAGCAGATCGAAG
* * * *
12322739 ACGGCGATTCTTATCTTCCCATGGTAGCAGGGACGCAGATTTAAGCCACTAGCCTTATCTCCCTG
581 ACGGCGATTCTTATATTCCCAAGCTAGCAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTG
* * * *
12322804 GTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
646 GTAAGTAATGGAACAGGTTGAAGATTATAAGTCC
* * *
12322838 TATCTCCCTAGTCAGAAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGG
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGG
* * *
12322903 AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACTGTGGAA-T-AG-GTG-AA-TCCTAT
66 AATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGCCAACAGTGGAATTAAGAGTGTAAGTCCTAT
*
12322963 CTCCCTGGTCACCAGTGGAATAGGTTGAAGGTTATGAATCCTATCTCCCTGGTCAGCAATGGAAT
131 CTCCCTGGTCACCAGTGG-A-A---T--AGG---TGAATCCTATCTCCCTGGTCACCAATGGAAT
* * * * *
12323028 AGGTTGAAGATTGTGAATCCTATGTTCCTGAGCAGCAGTGGCGTAGGTTGAAATTTACAGATCTT
186 AGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGATCTT
** *
12323093 ATCTCTTAAAGCAGTAGTGGAACAGAT-AAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGA
251 ATCTCCCAAAGCAGTAGTGGAACAGATCAAAGACGGCGAATCTTACCTTCCCAAGGTAGTAGGGA
* * * *
12323157 AGAAGATTTAAGCCACTAGCCTTATCT-CTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAACT
316 AGAAGATGTAAGCCACTAGCCTTATCTCCT-TCGTCAGTAGAGGAATAGGTTGAAGATTGTAACT
*
12323221 CATATCTCCCAGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGAT
380 CATATCTCCCAAGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGAT
**
12323286 GAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTATGAATCCTATCTC
445 GAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTACAAATCCTATCTC
* * * *
12323351 CCTGAGCAGCAGTGCAGTAAGTTGAAAATTACAGATCGTATCTCTCTAAGTAGTAGCAGAGCAGA
510 CCTGAGCAGCAATGCAGTAAGTTGAAAATTACAGATCGTATCTCCCAAAGCAGTAGCAGAGCAGA
* * *
12323416 TCGAAGACGGCGATTCTTATATTCCCAAGCTGGTAGGGAAGCAGATTTGAGCCACTAGCCTTATC
575 TCGAAGACGGCGATTCTTATATTCCCAAGCTAGCAGGGAAGCAGATTTAAGCCACTAGCCTTATC
* *
12323481 TCCCTGGTAAGTAATGGAACATGTTGAAGGTTATAAGTCC
640 TCCCTGGTAAGTAATGGAACAGGTTGAAGATTATAAGTCC
*
12323521 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGG
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGG
12323586 AATAGGT
66 AATAGGT
12323593 GAATCCAATC
Statistics
Matches: 673, Mismatches: 71, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
674 23 0.03
675 3 0.00
676 3 0.00
677 2 0.00
679 2 0.00
681 3 0.00
682 2 0.00
683 426 0.63
684 209 0.31
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (679 bp):
TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGG
AATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGCCAACAGTGGAATTAAGAGTGTAAGTCCTAT
CTCCCTGGTCACCAGTGGAATAGGTGAATCCTATCTCCCTGGTCACCAATGGAATAGGTTGAAGA
TTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAA
GCAGTAGTGGAACAGATCAAAGACGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTA
AGCCACTAGCCTTATCTCCTTCGTCAGTAGAGGAATAGGTTGAAGATTGTAACTCATATCTCCCA
AGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGATGAAGATTGTGA
ATCCTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTACAAATCCTATCTCCCTGAGCAGCA
ATGCAGTAAGTTGAAAATTACAGATCGTATCTCCCAAAGCAGTAGCAGAGCAGATCGAAGACGGC
GATTCTTATATTCCCAAGCTAGCAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTAAG
TAATGGAACAGGTTGAAGATTATAAGTCC
Found at i:12323271 original size:34 final size:35
Alignment explanation
Indices: 12323223--12323288 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 35
12323213 TTTTAACTCA
12323223 TATCTCCCAGGTCAGCAGTGAAATAGG-TGAATCC
1 TATCTCCCAGGTCAGCAGTGAAATAGGATGAATCC
** * *
12323257 TATCTCCCTTGTCAGTAGTGGAATAGGATGAA
1 TATCTCCCAGGTCAGCAGTGAAATAGGATGAA
12323289 GATTGTGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
34 23 0.85
35 4 0.15
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (35 bp):
TATCTCCCAGGTCAGCAGTGAAATAGGATGAATCC
Found at i:12323308 original size:78 final size:78
Alignment explanation
Indices: 12323179--12323328 Score: 221
Period size: 78 Copynumber: 1.9 Consensus size: 78
12323169 CCACTAGCCT
* * *
12323179 TATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAACTCATATCTCCCAGGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGATGAAGATTTGAACTCATATCTCCCAGGTCAGCAGTGA
12323244 AATAGGTGAATCC
66 AATAGGTGAATCC
* * *
12323257 TATCTCCCTTGTCAGTAGTGGAATAGGATGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGATGAAGATT-TGAACTCATATCTCCCAGGTCAGCAGTG
*
12323321 TAATAGGT
65 AAATAGGT
12323329 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
78 61 0.95
79 3 0.05
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGATGAAGATTTGAACTCATATCTCCCAGGTCAGCAGTGA
AATAGGTGAATCC
Found at i:12323609 original size:34 final size:34
Alignment explanation
Indices: 12323557--12323626 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
12323547 GTTGAAGATT
* *
12323557 GTGAGTCCTATCTCCCTGGTCAACAGTGGAATAG
1 GTGAATCCAATCTCCCTGGTCAACAGTGGAATAG
*
12323591 GTGAATCCAATCTCCCTGGTCAGCAGTGGAATAG
1 GTGAATCCAATCTCCCTGGTCAACAGTGGAATAG
12323625 GT
1 GT
12323627 TGAAGACTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (34 bp):
GTGAATCCAATCTCCCTGGTCAACAGTGGAATAG
Found at i:12323909 original size:78 final size:78
Alignment explanation
Indices: 12323775--12323924 Score: 219
Period size: 78 Copynumber: 1.9 Consensus size: 78
12323765 CCACTAGCCT
* * * * * *
12323775 TATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTGTTAGTGATATCTCCGTGGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATGAATCATATCTCCATGGTCAGCAGTGA
12323840 AATAGGTGAATCC
66 AATAGGTGAATCC
* * *
12323853 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCTTATCTCCATGGTCAGCAGTGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATGAATCATATCTCCATGGTCAGCAGTGA
12323918 AATAGGT
66 AATAGGT
12323925 TGAAGATTGT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATGAATCATATCTCCATGGTCAGCAGTGA
AATAGGTGAATCC
Found at i:12323957 original size:122 final size:122
Alignment explanation
Indices: 12323477--12324608 Score: 373
Period size: 122 Copynumber: 9.0 Consensus size: 122
12323467 CCACTAGCCT
* * * * **
12323477 TATCTCCCTGGTAAGTAATGGAACATGTTGAAGGTTAT-AAGTCCTATCTCCCTGGTCAGCAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATGAA-TCCTATCTCCCTGGTCAGCAGTG
* * * *
12323541 GAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTGAATCC
65 GAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGAAATAGGTGAATCC
* * * *
12323599 AATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCCTATCTCCCTGAG-CAGCAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATGAATCCTATCTCCCTG-GTCAGCAGTG
* ** *
12323663 GAGA-AGGTTGAAAATT-ACAGA-CCTTATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGG
65 GA-ATAGGTTGAAGATTGTGA-ATCC-TATCTCCCT-AGTCAGCAGT-GA--A-AT-----A-GG
* *
12323724 CGATTCC
116 TGAATCC
* * * * *
12323731 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACTA-G---CCTTATCTCCCTGGTTAG
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAG--ACTATGAATCC-TATCTCCCTGGTCAG
* * * ** * *
12323790 TAGTGGAATAGGTTGAAGATTGTTAGTGATATCTCCGTGGTCAGCAGTGAAATAGGTGAATCC
60 CAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGAAATAGGTGAATCC
* * * * *
12323853 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCTTATCTCCATGGTCAGCAGTGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATGAATCCTATCTCCCTGGTCAGCAGTGG
* *
12323918 AATAGGTTGAAGATTGTGAATCCTATCTCCCTAAG-CAGCAGTGGAGTAGGTTGAAAATTATAGA
66 AATAGGTTGAAGATTGTGAATCCTATCTCCCT-AGTCAGCAGTGAAATAGG-TG--------A-A
12323982 TCC
120 TCC
* * * * ** * * *** *
12323985 TATCTCCCTAAG-CAGTAGTGGAGTAGATCGAAGA-TGGCGATTCTTATCTTTCGAAGGT-AGTA
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGACT-ATGAATCCTATC--TCCCTGGTCAGCA
* * **** * * * *
12324047 G-GGAAGCAGATAT-AAGCCACT--AGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGAT
62 GTGGAA-TAGGT-TGAAGATTGTGAATCC-TATCTCCCTAGTCAGCAGT-GAA-A---T--AG-G
*
12324108 TGTAAGTCG
116 TG-AA-TCC
* * * * * * *
12324117 TATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCGTATCTCCCTGGTCAACAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATGAATCCTATCTCCCTGGTCAGCAGTGG
* * * * * * * *
12324182 AGTAGGTTGAAGATTGT-AAGTCCAATCTCCTTGGTCTGCAGTGGAATAGGTGGATTC
66 AATAGGTTGAAGATTGTGAA-TCCTATCTCCCTAGTCAGCAGTGAAATAGGTGAATCC
** * * * * *
12324239 TATCTCCCTGGTTGGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGT-AGCAGTA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATGAATCCTATCTCCCT-GGTCAGCAGTG
* * ** * * * *
12324303 GAGTAGGTTGAAAATT-ACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGA-CGGCG
65 GAATAGGTTGAAGATTGTGA-ATCCTATCT-CC----C--TAGT-CAGCAG-T-GAA-ATAGGTG
**
12324366 AATGT
118 AATCC
* * * * *
12324371 TATCTTCCCAAGG-AAGTAG-GGAAGAAGATTTAAGCCACTA-G---CCTTATCTCCCTGGTCAG
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAG--ACTATGAATCC-TATCTCCCTGGTCAG
* * * * * *
12324430 TAGTGGAATAGGTTGAAGATTGT-AAGTCATATCTCCCTGGTCTGCAGTGAAATAGGAGAATAC
60 CAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTAGTCAGCAGTGAAATAGGTGAATCC
* * * * * * *
12324493 TTTGTCCCTTGTCAGTACTGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATGAATCCTATCTCCCTGGTCAGCAGTGG
* **
12324558 AATAGGTTGAAGATTGTGAATCCTATCTCCCTCGTCAATAGTGAAATAGGT
66 AATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGAAATAGGT
12324609 TGAAAATTGT
Statistics
Matches: 734, Mismatches: 177, Indels: 198
0.66 0.16 0.18
Matches are distributed among these distances:
119 6 0.01
120 5 0.01
121 35 0.05
122 301 0.41
123 21 0.03
124 6 0.01
125 6 0.01
126 2 0.00
127 2 0.00
128 2 0.00
129 4 0.01
130 11 0.01
131 36 0.05
132 225 0.31
133 48 0.07
134 14 0.02
135 5 0.01
137 1 0.00
139 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (122 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATGAATCCTATCTCCCTGGTCAGCAGTGG
AATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGAAATAGGTGAATCC
Found at i:12324244 original size:298 final size:298
Alignment explanation
Indices: 12322880--12325134 Score: 1529
Period size: 298 Copynumber: 7.5 Consensus size: 298
12322870 GATTCTGAGT
** * *
12322880 CTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACTGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
* * *
12322945 GG-A-A--TAG-GTGAATCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGGTTATGAATCCT
66 GGAATAGGTAGAGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATCCT
* * * *
12323005 ATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTTCCTGAGCAGCAGTGGC
131 ATCTCCCTGGTCAGCAGTGGAATAGGTTG-AGA-T-T--ATCCTATCTCCCTGAGCAGCAGTGGA
* * * * * * *
12323070 GTAGGTTGAAATTTACAGATCTTATCT-CTTAAAGCAGTAGTGGAACAGAT-AAAGACGGCGAAT
191 GTAGGTTGAAAATTACAGATCCTATCTCCCT-AAGCAGTAGTAGAGCAGATCGAAGACGGCGATT
12323133 CTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
255 CTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * * * *
12323177 CTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAACTCATATCTCCCAGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
* ** *
12323242 -GAA-A--TAG-GTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGATGAAGATTGTGAATCCT
66 GGAATAGGTAGAGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATCCT
* *
12323302 ATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTATGAATCCTATCTCCCTGAGCAGCAGTGCA
131 ATCTCCCTGGTCAGCAGTGGAATAGGTTG-AGA-T-T--ATCCTATCTCCCTGAGCAGCAGTGGA
* * * * *
12323367 GTAAGTTGAAAATTACAGATCGTATCTCTCTAAGTAGTAGCAGAGCAGATCGAAGACGGCGATTC
191 GTAGGTTGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTC
* * * * *
12323432 TTATATTCCCAAGCTGGTAGGGAAGCAGATTTGAGCCACTAGC
256 TTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * * * * *
12323475 CTTATCTCCCTGGTAAGTAATGGAACATGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
*
12323540 GGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGG-A-A---T--AG---GTGA
66 GGAATAGG-T--AGA--GTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGA
*
12323595 ATCCAATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCCTATCTCCCTGAGCAGCA
126 ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTG-AGA-T-T-A-TCCTATCTCCCTGAGCAGCA
*
12323660 GTGGAGAAGGTTGAAAATTACAGA-CCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGG
186 GTGGAGTAGGTTGAAAATTACAGATCC-TATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGG
*
12323724 CGATTCCTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
250 CGATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * ** *
12323773 CTTATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTGTTAGTGATATCTCCGTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
* ** * *
12323838 -GAA-A--TAG-GTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCTT
66 GGAATAGGTAGAGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATCCT
* * *
12323898 ATCTCCATGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGA
131 ATCTCCCTGGTCAGCAGTGGAATAGGTTG-AGA-T-T--ATCCTATCTCCCTGAGCAGCAGTGGA
* * * *
12323963 GTAGGTTGAAAATTATAGATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGATTC
191 GTAGGTTGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTC
* * * *
12324028 TTATCTTTCGAAGGTAGTAGGGAAGCAGATATAAGCCACTAGC
256 TTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
*
12324071 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCGTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
* * *
12324136 GGAATAGGTTGACGATTGTGAGTCGTATCTCCCTGGTCAACAGTGGAGTAGGTTGAAGATTGT-A
66 GGAATAGG-T-A-GA--GTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGA
* * * **
12324200 AGTCCAATCTCCTTGGTCTGCAGTGGAATAGG-TG-GA-T-T-CTATCTCCCTG-GTTGGCAGTG
126 A-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAGATTATCCTATCTCCCTGAG-CAGCAGTG
* * ** * * * * * * ***
12324259 GAATAGGTTGAAGATT-GTGAATCCTATCTCCCTAAGTAGCAGTAGAGTAGGTTGAAAATTACAG
189 GAGTAGGTTGAAAATTACAG-ATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGC-G
* * * ** ** * **
12324323 A-TCTTATC-TCCCAAAGCAGTAGTGG-AGCAGATCGAAGACGGCGAAT
252 ATTCTTATCTTCCCAAGGTAGTAG-GGAAGAAGATTTAAG-CCACTAGC
* * * * * * ****
12324369 GTTATCTTCCCAAGG-AAGTAG-GGAAGAAGATTTAAGCCACT-AG-CCTTATCTCCCTGGTCAG
1 CTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCCTGGTCAG
* * * ** * * *
12324430 TAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCTGCAGTGAAATAGG-AGAATACT
62 CAGTGGAATAGG-T--AGAGTG-AA-TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGA-T
* *
12324494 T-TG--TCC---CT---T-GTCAGTACTGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTG-G
121 TGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTG-AGA-T-T-A-TCCTATCTCCCTGAG
* * * ** * * ** * *
12324548 TCAGCAGTGTAATAGGTTGAAGATT-GTGAATCCTATCTCCCT-CGTCAATAGT-GAAATAGGTT
181 -CAGCAGTGGAGTAGGTTGAAAATTACAG-ATCCTATCTCCCTAAG-CAGTAGTAG-AGCAGATC
* ** * * * * * * * * * * *** *
12324610 GAAAATTGTGAATCCTAGC-TCCC-TGAGCAGCAGTGG-AGTAGGTTAAAAATTAC-AGAA
242 GAAGACGGCGATTCTTATCTTCCCAAG-GTAGTAG-GGAAGAAGATT-TAAGCCACTAG-C
* * * * * * * * * ** * *
12324667 GTTATCTCCCTAAG-CAGTAGTAGAGTAGATCGAAG-TGGCGAATTTTTAT-TCCCAAGGT-AGT
1 CTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCCTATCTCCC-TGGTCAGC
* * * * * * ** *
12324728 AG-GGAAGCAGATTTA-AG-GCACTAGCGTTATCTTCCTGGTTAGTAGTGGAATAGGTTGACGAT
63 AGTGGAA-TAG--GTAGAGTG-A--ATC-CTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGAT
* * * * *
12324790 TGT-AAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGCTGAAAATTTTGAATCCAATATCCCTGA
121 TGTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTG-AGA--TT--ATCCTATCTCCCTGA
* * **
12324854 GCAGCAGTGGAGTAGGTTGCAAATTATAGATATTATCTCCCTAAGCAGTAGTAGAGCAGATCGAA
180 GCAGCAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAA
* *
12324919 GACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAAGCTACTAGC
245 GACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
*
12324973 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGC
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
* * * * * * *
12325038 GGGATAGGTTGAAGATTGAGAGACTTATCTCCCTGGTCAACAATAGAATAGGTTTAAGATTGT-A
66 GGAATAGG-T--AGAGTGA-A-TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGA
* *
12325102 AGTACTATCTCCCTGGTCAGCAATGGAATAGGT
126 A-TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
12325135 GAATCATATC
Statistics
Matches: 1553, Mismatches: 292, Indels: 215
0.75 0.14 0.10
Matches are distributed among these distances:
288 39 0.03
289 4 0.00
290 1 0.00
291 4 0.00
292 2 0.00
293 2 0.00
294 3 0.00
295 7 0.00
296 34 0.02
297 277 0.18
298 793 0.51
299 35 0.02
300 4 0.00
301 2 0.00
302 3 0.00
303 3 0.00
304 1 0.00
305 7 0.00
306 130 0.08
307 42 0.03
308 156 0.10
309 3 0.00
310 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (298 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
GGAATAGGTAGAGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATCCT
ATCTCCCTGGTCAGCAGTGGAATAGGTTGAGATTATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
TTGAAAATTACAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATC
TTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
Found at i:12324260 original size:596 final size:596
Alignment explanation
Indices: 12322880--12324232 Score: 1851
Period size: 596 Copynumber: 2.3 Consensus size: 596
12322870 GATTCTGAGT
** * *
12322880 CTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACTGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
* *
12322945 GGAATAGG-T--GA-----A-TCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGGTTATGAA
66 GGAATAGGTTGAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGG-ATAGGTTGAA-GTTGT-AA
* * * *
12323001 TCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTTCCTGAGCAGCAG
128 TCCAATCTCCCTGGTCAGCAGTGGAATAGGTTG-AGA-T-T--ATCCTATCTCCCTGAGCAGCAG
* * * * * *
12323066 TGGCGTAGGTTGAAATTTACAGATCTTATCTCTTAAAGCAGTAGTGGAACAGATAAAGACGGCGA
188 TGGAGAAGGTTGAAAATTACAGACCTTATCTCCTAAAGCAGTAGTAGAACAGATAAAGACGGCGA
* *
12323131 ATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCTCTGGTCAGTA
253 ATCCTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTA
12323196 GTGGAATAGGTTGAAGATTTTAACTCATATCTCCCAGGTCAGCAGTGAAATAGGTGAATCCTATC
318 GTGGAATAGGTTGAAGATTTTAACTCATATCTCCCAGGTCAGCAGTGAAATAGGTGAATCCTATC
* *
12323261 TCCCTTGTCAGTAGTGGAATAGGATGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGTAATA
383 TCCCTTGTCAGTAGTGGAATAGGATGAAGATTATGAATCCTATCTCCATGGTCAGCAGTGTAATA
* *
12323326 GGTTGAAGATTATGAATCCTATCTCCCTGAGCAGCAGTGCAGTAAGTTGAAAATTACAGATCGTA
448 GGTTGAAGATTATGAATCCTATCTCCCTAAGCAGCAGTGCAGTAAGTTGAAAATTACAGATCCTA
* * *
12323391 TCTCTCTAAGTAGTAGCAGAGCAGATCGAAGACGGCGATTCTTATATTCCCAAGCTGGTAGGGAA
513 TCTCCCTAAGCAGTAGCAGAGCAGATCGAAGACGGCGATTCTTATATTCCCAAGCTAGTAGGGAA
* *
12323456 GCAGATTTGAGCCACTAGC
578 GCAGATATAAGCCACTAGC
* * * * * *
12323475 CTTATCTCCCTGGTAAGTAATGGAACATGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
*
12323540 GGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGA-A---T--AGGTG-AATC
66 GGAATAGGTTG-AGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGATAGGTTGAAGTTGTAATC
12323598 CAATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCCTATCTCCCTGAGCAGCAGTG
130 CAATCTCCCTGGTCAGCAGTGGAATAGGTTG-AGA-T-T-A-TCCTATCTCCCTGAGCAGCAGTG
* *
12323663 GAGAAGGTTGAAAATTACAGACCTTATCTCCCT-AAGCAGTAGTAGAGCAGATCGAAGACGGCGA
190 GAGAAGGTTGAAAATTACAGACCTTATCT-CCTAAAGCAGTAGTAGAACAGAT-AAAGACGGCGA
* *
12323727 TTCCTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTTAGTA
253 ATCCTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTA
* * **
12323792 GTGGAATAGGTTGAAGATTGTT-AGTGATATCTCCGTGGTCAGCAGTGAAATAGGTGAATCCTAT
318 GTGGAATAGGTTGAAGATT-TTAACTCATATCTCCCAGGTCAGCAGTGAAATAGGTGAATCCTAT
* *
12323856 CTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCTTATCTCCATGGTCAGCAGTGTAAT
382 CTCCCTTGTCAGTAGTGGAATAGGATGAAGATTATGAATCCTATCTCCATGGTCAGCAGTGTAAT
* * * *
12323921 AGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTATAGATCCT
447 AGGTTGAAGATTATGAATCCTATCTCCCTAAGCAGCAGTGCAGTAAGTTGAAAATTACAGATCCT
** * * * * * *
12323986 ATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGATTCTTATCTTTCGAAGGTAGTAGGGA
512 ATCTCCCTAAGCAGTAGCAGAGCAGATCGAAGACGGCGATTCTTATATTCCCAAGCTAGTAGGGA
12324051 AGCAGATATAAGCCACTAGC
577 AGCAGATATAAGCCACTAGC
*
12324071 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCGTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
*
12324136 GGAATAGGTTGACGATTGTGAGTCGTATCTCCCTGGTCAACAGTGGAGTAGGTTGAAGATTGTAA
66 GGAATAGGTTGA-GATTGTGAGTCCTATCTCCCTGGTCAACAGTGGA-TAGGTTGAAG-TTGTAA
* *
12324201 GTCCAATCTCCTTGGTCTGCAGTGGAATAGGT
128 -TCCAATCTCCCTGGTCAGCAGTGGAATAGGT
12324233 GGATTCTATC
Statistics
Matches: 664, Mismatches: 69, Indels: 39
0.86 0.09 0.05
Matches are distributed among these distances:
594 1 0.00
595 167 0.25
596 425 0.64
597 4 0.01
598 2 0.00
599 2 0.00
600 1 0.00
601 1 0.00
603 3 0.00
604 4 0.01
605 25 0.04
606 29 0.04
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (596 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGT
GGAATAGGTTGAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGATAGGTTGAAGTTGTAATCC
AATCTCCCTGGTCAGCAGTGGAATAGGTTGAGATTATCCTATCTCCCTGAGCAGCAGTGGAGAAG
GTTGAAAATTACAGACCTTATCTCCTAAAGCAGTAGTAGAACAGATAAAGACGGCGAATCCTATC
TTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATA
GGTTGAAGATTTTAACTCATATCTCCCAGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGT
CAGTAGTGGAATAGGATGAAGATTATGAATCCTATCTCCATGGTCAGCAGTGTAATAGGTTGAAG
ATTATGAATCCTATCTCCCTAAGCAGCAGTGCAGTAAGTTGAAAATTACAGATCCTATCTCCCTA
AGCAGTAGCAGAGCAGATCGAAGACGGCGATTCTTATATTCCCAAGCTAGTAGGGAAGCAGATAT
AAGCCACTAGC
Found at i:12324301 original size:78 final size:78
Alignment explanation
Indices: 12324161--12324310 Score: 178
Period size: 78 Copynumber: 1.9 Consensus size: 78
12324151 TTGTGAGTCG
* ** * *
12324161 TATCTCCCTGGTCAACAGTGGAGTAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCTGCAGTGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTAAGTCAGCAGTAG
12324226 AATAGGTGGATTC
66 AATAGGTGGATTC
*** *
12324239 TATCTCCCTGGTTGGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTAAGT-AGCAGT
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAGTCCAATCT-CCTAAGTCAGCAGT
*
12324302 AGAGTAGGT
64 AGAATAGGT
12324311 TGAAAATTAC
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
78 53 0.88
79 7 0.12
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (78 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTAAGTCAGCAGTAG
AATAGGTGGATTC
Found at i:12324407 original size:342 final size:337
Alignment explanation
Indices: 12323854--12324825 Score: 1193
Period size: 342 Copynumber: 2.8 Consensus size: 337
12323844 GGTGAATCCT
* * * * *
12323854 ATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCTTATCTCCATGGTCAGCAGTGTA
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTG-AGA-T-T--ATCCTATCTCCCTGGTCAGCAGTGAA
*
12323919 ATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTATAGATC
61 ATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAGATC
* * * *
12323984 CTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGATTCTTATCTTTCGAAGGTAGTAGG
126 TTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGAAT-TTATCTTCCCAAGGTAGTAGG
*
12324049 GAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG
190 GAAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG
* * *
12324114 TCGTATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCGTATCTCCCTGGTCAACAG
255 TCATATCTCCCTGGTCAGCAGTGGAATAGG--GA-GA--AT-A--C-TATCTCCCTGGTCAACAC
* *
12324179 TGGAGTAGGTTGAAGATTGTAAGTCCA
311 TGGAATAGGTTGAAGATTATAAGTCCA
* * ** *
12324206 ATCTCCTTGGTCTGCAGTGGAATAGG-TG-GA-T-T-CTATCTCCCTGGTTGGCAGTGGAATAGG
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAGATTATCCTATCTCCCTGGTCAGCAGTGAAATAGG
* *
12324266 TTGAAGATTGTGAATCCTATCTCCCTAAGTAGCAGTAGAGTAGGTTGAAAATTACAGATCTTATC
66 TTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATC
* * * * *
12324331 TCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATGTTATCTTCCCAAGGAAGTAGGGAAGA
131 TCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGAAT-TTATCTTCCCAAGGTAGTAGGGAAGC
12324396 AGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATA
195 AGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATA
* * * * * **
12324461 TCTCCCTGGTCTGCAGTGAAATA-GGAGAATACTTTGTCCCTTGTCAGTACTGGAATAGGTTGAA
260 TCTCCCTGGTCAGCAGTGGAATAGGGAGAATACTATCTCCCTGGTCAACACTGGAATAGGTTGAA
* *
12324525 GATTATGAGTCCT
325 GATTATAAGTCCA
* * **
12324538 ATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTCGTCAATAGTGAA
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTG-AGA-T-T--ATCCTATCTCCCTGGTCAGCAGTGAA
* * * * **
12324603 ATAGGTTGAAAATTGTGAATCCTAGCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATTACAGAAG
61 ATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAGATC
* * *
12324668 TTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAG-TGGCGAATTTTTATTCCCAAGGTAGTAGGG
126 TTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGAATTTATCTTCCCAAGGTAGTAGGG
* * * * *
12324732 AAGCAGATTTAAGGCACTAGCGTTATCTTCCTGGTTAGTAGTGGAATAGGTTGACGATTGTAAGT
191 AAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT
* *
12324797 CCTATCTCCCTAGTCAGCAGTGGAATAGG
256 CATATCTCCCTGGTCAGCAGTGGAATAGG
12324826 CTGAAAATTT
Statistics
Matches: 538, Mismatches: 71, Indels: 33
0.84 0.11 0.05
Matches are distributed among these distances:
332 58 0.11
333 3 0.01
335 3 0.01
336 1 0.00
338 3 0.01
339 2 0.00
340 101 0.19
341 10 0.02
342 329 0.61
343 1 0.00
346 1 0.00
349 2 0.00
351 2 0.00
352 22 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (337 bp):
ATCTCCCTGGTCAGCAGTGGAATAGGTTGAGATTATCCTATCTCCCTGGTCAGCAGTGAAATAGG
TTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATC
TCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGAATTTATCTTCCCAAGGTAGTAGGGAAGCA
GATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATAT
CTCCCTGGTCAGCAGTGGAATAGGGAGAATACTATCTCCCTGGTCAACACTGGAATAGGTTGAAG
ATTATAAGTCCA
Found at i:12324548 original size:78 final size:78
Alignment explanation
Indices: 12324419--12324563 Score: 227
Period size: 78 Copynumber: 1.9 Consensus size: 78
12324409 TAGCCTTATC
* * *
12324419 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCTGCAGTGAAATA
1 TCCCTGGTCAGTACTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGAAATA
12324484 GGAGAATACTTTG
66 GGAGAATACTTTG
* * * *
12324497 TCCCTTGTCAGTACTGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGTAATA
1 TCCCTGGTCAGTACTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGAAATA
12324562 GG
66 GG
12324564 TTGAAGATTG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 60 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (78 bp):
TCCCTGGTCAGTACTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGAAATA
GGAGAATACTTTG
Found at i:12325329 original size:386 final size:390
Alignment explanation
Indices: 12324771--12325608 Score: 1062
Period size: 386 Copynumber: 2.1 Consensus size: 390
12324761 CCTGGTTAGT
* * * * * * * *
12324771 AGTGGAATAGGTTGACGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGCTGAAAATTT
1 AGTGGAATAGGTTAAAGATTGGAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAAACTG
* * * *
12324836 TGAATCCAATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAATTATAGATATTATCTCCCTAAGCA
66 CGAATCCAATATCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATATTATCTCCCAAAGCA
* * **
12324901 GTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAAG-
131 GTAGTAGAGCAAATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTAGGGAAACAGATTTAAGA
**
12324965 CTACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGG
196 C-ACTAGCCTTATAACCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGG
* * * *
12325030 TCAGCAGCGGGATAGGTTGAAGATTGAGAGACTTATCTCCCTGGTCAACAATAGAATAGGTTTAA
260 TCAGCAGCGGAATAGGTTGAAGATTGAGAGACATATCTCCCTGGCCAACAATAGAATAGGTTGAA
* *
12325095 GAT-TGTAAGTAC-TATCTCCCTGGTCAGCAATGGAATAGG-T-GA-A-TCATATCTCCCTGGTC
325 GATCT-TAAG-ACTTATCTCCCTAGTCAGCAATGGAATAGGTTAGATAGTCATATCTCCCTGGCC
12325154 AGC
388 AGC
* * * *
12325157 AGTGGACTTGGTTAAAGATTGGGAA-TCTTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACT
1 AGTGGAATAGGTTAAAGATT-GGAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAAACT
* * * *
12325221 GCGAATCCAATGTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTTCCAAAGC
65 GCGAATCCAATATCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATATTATCTCCCAAAGC
*
12325286 AGTAGTGGAGCAAATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTAGGGAAACAGATTTAAG
130 AGTAGTAGAGCAAATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTAGGGAAACAGATTTAAG
* * * ** * *
12325351 ACACTGGCCTTATAACTCTGTTCTTTAGTGGAATAGGTTGAAGATTTTAAGTCTTATCTCCCTGG
195 ACACTAGCCTTATAACCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGG
* * * * * * *
12325416 TCAGTAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGCCAGCAGTGGAATAGGTTGAA
260 TCAGCAGCGGAATAGGTTGAAGATTGAGAGACATATCTCCCTGGCCAACAATAGAATAGGTTGAA
* * *
12325481 GATCTTAAGCCTTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCT
325 GATCTTAAGACTTATCTCCCTAGTCAGCAATGGAATAGGTT--AGA---T-AGTCATATCTCCCT
12325546 GGCCAGC
384 GGCCAGC
* *
12325553 AGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGT
1 AGTGGAATAGGTTAAAGATTGGAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGT
12325609 GAATCCTATC
Statistics
Matches: 382, Mismatches: 55, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
385 1 0.00
386 304 0.80
387 6 0.02
390 2 0.01
395 4 0.01
396 65 0.17
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (390 bp):
AGTGGAATAGGTTAAAGATTGGAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAAACTG
CGAATCCAATATCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATATTATCTCCCAAAGCA
GTAGTAGAGCAAATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTAGGGAAACAGATTTAAGA
CACTAGCCTTATAACCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGT
CAGCAGCGGAATAGGTTGAAGATTGAGAGACATATCTCCCTGGCCAACAATAGAATAGGTTGAAG
ATCTTAAGACTTATCTCCCTAGTCAGCAATGGAATAGGTTAGATAGTCATATCTCCCTGGCCAGC
Found at i:12325621 original size:34 final size:34
Alignment explanation
Indices: 12325578--12325642 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
12325568 AGATTGTAAG
*
12325578 TCCTATCTCCCTGGTCAGCAATGGAATAGGTGAA
1 TCCTATCTCCCTAGTCAGCAATGGAATAGGTGAA
*
12325612 TCCTATCTCCCTAGTCAGCAGTGGAATAGGT
1 TCCTATCTCCCTAGTCAGCAATGGAATAGGT
12325643 TAAAGATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTAGTCAGCAATGGAATAGGTGAA
Found at i:12325639 original size:430 final size:422
Alignment explanation
Indices: 12324973--12325932 Score: 1128
Period size: 430 Copynumber: 2.2 Consensus size: 422
12324963 AGCTACTAGC
* * *
12324973 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGC
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGG-CAGCAGT
* * *
12325038 GGGATAGGTTGAAGATTGAGAGACTTATCTCCCTGGTCAACAATAGAATAGGTTTAAGATTGTAA
65 GGAATAGGTTGAAGATTGAGAGACTTATCTCCCTAGTCAACAATAGAATAGGTTGAAGATTGTAA
*
12325103 GTACTATCTCCCTGGTCAGCAATGGAATAGGTGAATCATATCTCCCTGGTCAGCAGTGGACTTGG
130 GTACTATCTCCCTGGCCAGCAATGGAATAGGTGAATCATATCTCCCTGGTCAGCA---GAC-TGG
* * * *
12325168 TTAAAGATTGGGAATCTTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCAATG
191 -TAAAG--TGGGAATCCTATCTCCCTAGTCAGCAATGGAATAGGTTAAAGACTGCGAATCCAATC
* *
12325233 TCCTTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTTCCAAAGCAGTAGTGGAGCA
253 TCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCA
* * * *
12325298 AATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTAGGGAAACAGATTTAAGACACTGGCCTTA
318 AATCGAAGACAGCGAATATTATCTGCCCAAGGTAGTAGGGAAACAGATTTAAGACACTAGCCTTA
* * ** *
12325363 TAACTCTGTTCTTTAGTGGAATAGGTTGAAGATTTTAAGT
383 TAACCCTGGTCGGTAGTGGAATAGGTTGAAGATTGTAAGT
12325403 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGCCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGG-CAGCAGT
* * ** * * *
12325468 GGAATAGGTTGAAGATCTTA-AGCCTTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTG
65 GGAATAGGTTGAAGAT-TGAGAGACTTATCTCCCTAGTCAACAATAGAATAGGTTGAAGATTGTA
* *
12325532 AGT-CATATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
129 AGTAC-TATCTCCCTGGCCAGCAATGGAATA----G--G--TG-AA-TCATATCTCCCTGGTCAG
* * * *
12325596 CA-A-TGG-AATAG-GTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
183 CAGACTGGTAA-AGTGGGAATCCTATCTCCCTAGTCAGCAATGGAATAGGTTAAAGACTGCGAAT
** * * * *
12325657 CCTGTCTCCCTGAGCAGTAGTGTAGTAGGTTGAAAATTACAGATTTTATCTCCCTAAGCAGTAGT
247 CCAATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGT
* * * * * *
12325722 TGAGCAGATCGAAGACAGCGAATATTATCTTCCCGAGGTAGTAGGGAAGCAGATTTAAGCCACTA
312 GGAGCAAATCGAAGACAGCGAATATTATCTGCCCAAGGTAGTAGGGAAACAGATTTAAGACACTA
**
12325787 GCCTTATCTCCCTGGTCGGTAGTGGAATAGGTTGAAGATTGTAAGT
377 GCCTTATAACCCTGGTCGGTAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
12325833 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCA-ATCTCCCTGAGCAACAG
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAGT-CATATCTCCCTG-GCAGCAG
* *
12325897 TGGAGA-AGGTTGAAAATT-ACAGATCTTATCTCCCTA
64 TGGA-ATAGGTTGAAGATTGAGAGA-CTTATCTCCCTA
12325933 AGCAGTTGTA
Statistics
Matches: 456, Mismatches: 56, Indels: 36
0.83 0.10 0.07
Matches are distributed among these distances:
428 1 0.00
429 4 0.01
430 412 0.90
431 6 0.01
432 2 0.00
433 2 0.00
434 4 0.01
436 2 0.00
438 2 0.00
439 2 0.00
440 19 0.04
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (422 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGCAGCAGTG
GAATAGGTTGAAGATTGAGAGACTTATCTCCCTAGTCAACAATAGAATAGGTTGAAGATTGTAAG
TACTATCTCCCTGGCCAGCAATGGAATAGGTGAATCATATCTCCCTGGTCAGCAGACTGGTAAAG
TGGGAATCCTATCTCCCTAGTCAGCAATGGAATAGGTTAAAGACTGCGAATCCAATCTCCCTGAG
CAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAAATCGAAG
ACAGCGAATATTATCTGCCCAAGGTAGTAGGGAAACAGATTTAAGACACTAGCCTTATAACCCTG
GTCGGTAGTGGAATAGGTTGAAGATTGTAAGT
Found at i:12325887 original size:220 final size:220
Alignment explanation
Indices: 12325141--12326952 Score: 944
Period size: 220 Copynumber: 8.3 Consensus size: 220
12325131 AGGTGAATCA
* * * * * *
12325141 TATCTCCCTGGTCAGCAGTGGACTTGGTTAAAGATTGGGAA-TCTTATCTCCCTGGTCAGCAATG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-GTAAGTCTTATCTCCCTGGTCAGCAGTG
* * * *
12325205 GAATAGGTTGAAGACTGCGAATCCAATGTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
65 GAATAGGTTGAAGATTGTGAATCCAATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
* * * * *
12325270 TCTTATCTTCCAAAGCAGTAGTGGAGCAAATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTA
130 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGATTATTATCTTCCCAAGGTAGTA
* *
12325335 GGGAAACAGATTTAAGACACTGGCCT
195 GGGAAGCAGATTTAAGACACTAGCCT
** * * ** * *
12325361 TATAACTCTGTTCTTTAGTGGAATAGGTTGAAGATTTTAAGTCTTATCTCCCTGGTCAGTAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGG
* * *
12325426 AATAGGTTGAAGATTGTGAGT-CATATCTCCCTG-GCCAGCAGTGGAATAGGTTGAAGATCTTA-
66 AATAGGTTGAAGATTGTGAATCCA-ATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA-A-ATTAC
* ** * * ** * * *
12325488 AG-CCTTATCTCCCT-AGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCA-TATC-TCCC-TGG
127 AGATCTTATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAGACGGCGA-TTATTATCTTCCCAAGG
* * * * * ***
12325548 CCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC-
190 -TAGTAG-GGAAGCAGATTTAAGACACT-AG-CCT
* * * *
12325581 TATCTCCCTGGTCAGCAATGGAATA----G--G--TG-AA-TCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGG
* ** * *
12325636 AATAGGTTAAAGATTGTGAATCCTGTCTCCCTGAGCAGTAGTGTAGTAGGTTGAAAATTACAGAT
66 AATAGGTTGAAGATTGTGAATCCAATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * * * *
12325701 TTTATCTCCCTAAGCAGTAGTTGAGCAGATCGAAGACAGCGAATATTATCTTCCCGAGGTAGTAG
131 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGATTATTATCTTCCCAAGGTAGTAG
*
12325766 GGAAGCAGATTTAAGCCACTAGCCT
196 GGAAGCAGATTTAAGACACTAGCCT
* *
12325791 TATCTCCCTGGTCGGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGG
* *
12325856 AATAGGTTGAAGATTGTGAATCCAATCTCCCTGAGCAACAGTGGAGAAGGTTGAAAATTACAGAT
66 AATAGGTTGAAGATTGTGAATCCAATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * * * * * * *
12325921 CTTATCTCCCTAAGCAGTTGTAGAGCAGATCAAACACGGCTATTCTTATCTTACCAAGGTAGTAA
131 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGATTATTATCTTCCCAAGGTAGTAG
*
12325986 GGAAGTAGATTTAAG-CTACTAGCCT
196 GGAAGCAGATTTAAGAC-ACTAGCCT
* * *
12326011 TATTTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCATGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGG
* * * * * * ** * * **
12326076 AATAGATTGAAGATTGCGAGTCCTATCTCCCTCATCAATAGTGAAATAGGTTGAAAATT-GTGAA
66 AATAGGTTGAAGATTGTGAATCCAATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAG-A
* * * * ** * *** *
12326140 TCCTT-GCTCCCTGAGCAGTAGTGGAGTAGGTTAAAAATTACAGA--AGTTATC-TCCCTAACCA
130 T-CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGC-GATTA-TTATCTTCCC-AA--G
* * * ** *
12326201 GTAGTA--G-AGCAGATTAAAGACGGCGAATCA
189 GTAGTAGGGAAGCAGATTTAAGAC-ACTAGCCT
* * * * * *** * * *
12326231 TATCTTCCCAAGGT-AGTA-AGGAAGCAGATTTAAGACACT-AGCCTTATCTTCCTGGTCAGTAG
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAG
* * ** * *
12326293 TGGAATAGGTAGACGATTGT-AAGTCCTGTCTCCCT-AGTCAGCAGTGGAATAGGCTGAAAATT-
63 TGGAATAGGTTGAAGATTGTGAA-TCCAATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTA
** * * * * * * * **** *
12326355 GTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGCAA-ATTATAGA-TCTTATC-TCCCTA
126 CAG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AAGA-CGGCGATTATTATCTTCCC-A
** * * **
12326417 AGCAGTAGTA--G-AGCAGATCGAAGACGGCGATTCT
187 AG--GTAGTAGGGAAGCAGATTTAAGAC-ACTAGCCT
* * * **** * * * * *
12326451 TATCTTCCCAAGGT-AGTAG-GGAAGTAGATTTAAGCCACT-AGCCTTATCTTCATGGTTAGTAG
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAG
* *
12326513 GGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTG-GTCAGCAGTGG-GATAGGTT-AAAGAT
63 TGGAATAGGTTGAAGATTGTGAA-TCCAATCTCCCTGAG-CAGCAGTGGAG-TAGGTTGAAA-AT
** * * ** ** * * ** ** * *
12326574 T-GTGAGTCTTATCTCTCT-TGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATC-TCCC-
124 TACAGA-TCTTATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAGACGGCGATTATTATCTTCCCA
* * * * * *
12326635 TGGTAAGCAATGGAA-TAG--GT--GA-A-T---CA
187 AGGT-AG-TAGGGAAGCAGATTTAAGACACTAGCCT
* * * * * * *
12326661 TATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-TCCTATCTCCCTAGTCAGCAATA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCTTATCTCCCTGGTCAGCAGTG
* * * *
12326725 GAATAGGTTGAAGATTGGGAATCCTATCTCCCTGACCAGTAGTGGAGTAGGTTGAAAATTACAGA
65 GAATAGGTTGAAGATTGTGAATCCAATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
* * * * * *
12326790 TCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTACCTTCCTAAGGTAGTA
130 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGATTATTATCTTCCCAAGGTAGTA
* * * * *
12326855 GGGAAGAAAATGTAAGCCACTAACCT
195 GGGAAGCAGATTTAAGACACTAGCCT
* * *
12326881 TATCTCCTTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGG
12326946 AATAGGT
66 AATAGGT
12326953 GAATCCTATC
Statistics
Matches: 1227, Mismatches: 278, Indels: 174
0.73 0.17 0.10
Matches are distributed among these distances:
208 6 0.00
209 22 0.02
210 233 0.19
211 38 0.03
212 6 0.00
213 2 0.00
214 2 0.00
215 1 0.00
216 7 0.01
217 3 0.00
218 6 0.00
219 55 0.04
220 804 0.66
221 30 0.02
222 12 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (220 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGG
AATAGGTTGAAGATTGTGAATCCAATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGATTATTATCTTCCCAAGGTAGTAG
GGAAGCAGATTTAAGACACTAGCCT
Found at i:12326712 original size:78 final size:78
Alignment explanation
Indices: 12326583--12326732 Score: 203
Period size: 78 Copynumber: 1.9 Consensus size: 78
12326573 TTGTGAGTCT
* * * *
12326583 TATCTCTCTTGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTAAGCAATGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTAGTAAGCAATAG
12326648 AATAGGTGAATCA
66 AATAGGTGAATCA
* * * * *
12326661 TATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-TCCTATCTCCCTAGTCAGCAATA
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAGTACTATCTCCCTAGTAAGCAATA
12326725 GAATAGGT
65 GAATAGGT
12326733 TGAAGATTGG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
78 60 0.97
79 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (78 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTAGTAAGCAATAG
AATAGGTGAATCA
Found at i:12326756 original size:122 final size:122
Alignment explanation
Indices: 12326539--12326758 Score: 309
Period size: 122 Copynumber: 1.8 Consensus size: 122
12326529 TTGTAAGTCC
* * * * * *
12326539 TATCTCCCTGGTCAGCAGTGGGATAGGTTAAAGATTGTGAGTCTTATCTCTCTTGTCAACAGTGG
1 TATCTCCCTGGTCAGCAGTGGGATAGGTTAAAGATTGTGAATCCTATCTCCCTAGTCAACAATAG
*
12326604 AATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTAAGCAATGGAATAGGTGAATCA
66 AATAGGTTGAAGATTGGAAGTACTATCTCCCTGGTAAGCAATGGAATAGGTGAATCA
* * *
12326661 TATCTCCCTGGTCAGCAGT-GGACTTGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAATA
1 TATCTCCCTGGTCAGCAGTGGGA-TAGGTTAAAGATTGTGAATCCTATCTCCCTAGTCAACAATA
*
12326725 GAATAGGTTGAAGATTGGGAA-TCCTATCTCCCTG
65 GAATAGGTTGAAGATT-GGAAGTACTATCTCCCTG
12326759 ACCAGTAGTG
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
121 3 0.04
122 79 0.93
123 3 0.04
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (122 bp):
TATCTCCCTGGTCAGCAGTGGGATAGGTTAAAGATTGTGAATCCTATCTCCCTAGTCAACAATAG
AATAGGTTGAAGATTGGAAGTACTATCTCCCTGGTAAGCAATGGAATAGGTGAATCA
Found at i:12326912 original size:298 final size:297
Alignment explanation
Indices: 12326581--12327250 Score: 941
Period size: 298 Copynumber: 2.2 Consensus size: 297
12326571 GATTGTGAGT
** * *
12326581 CTTATCTCTCTTGTCAACAGTGGAATAGGTTGAAGATTGTAAGT-ACTATCTCCCTGGTAAGCAA
1 CTTATCTC-CTTGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA-TATCTCCCTGGTCAGCAG
* * * *
12326645 TGGAATAGGTGAATCATATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCT
64 TGGAATAGGTGAATCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCAATCT
* *
12326710 CCCTAGTCAGCAATAG-AATAGGTTGAAGATTGGGAATCCTATCTCCCTGACCAGTAGTGGAGTA
129 CCCTAGTCAGCAAT-GTAATAAGTTGAAGATTGGGAATCCTATCTCCCTGACCAGCAGTGGAGTA
* *
12326774 GGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTA
193 GGTTGAAAATTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGATGGCGAATCTTA
*
12326839 -CCTTCCTAAGGTAGTAGGGAAGAAAATGTAAGCCACTAAC
258 TCCTTCC-AAGGTAGTAGGGAAGAAAATATAAGCCACTAAC
12326879 CTTATCTCCTTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
1 CTTATCTCCTT-GTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
* * * *
12326944 GAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCAATCTC
65 GGAATAGGTGAATCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCAATCTC
* * * * *
12327009 CCTGGTCAGCAGTGTAATAAGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTGGG
130 CCTAGTCAGCAATGTAATAAGTTGAAGATTGGGAATCCTATCTCCCTGACCAGCAGTGGAGTAGG
* * * *
12327074 TTGAAAATTATAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGATGATGGCGATTCTTATC
195 TTGAAAATTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGATGGCGAATCTTATC
* * * *
12327139 TTTCCAAGGTAGTAGGGAAGCAGATATAAGCCACTAGC
260 CTTCCAAGGTAGTAGGGAAGAAAATATAAGCCACTAAC
* * * * * *
12327177 CTTATCTCCCTAGTCAGTAGTGGAATAGGTTAAAGATTGTAAGCCGTATCTCCTTGGTCAGCAGG
1 CTTATCT-CCTTGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
12327242 GGAATAGGT
65 GGAATAGGT
12327251 TGACGATTGT
Statistics
Matches: 330, Mismatches: 37, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
297 4 0.01
298 317 0.96
299 9 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (297 bp):
CTTATCTCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTG
GAATAGGTGAATCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCAATCTCC
CTAGTCAGCAATGTAATAAGTTGAAGATTGGGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGT
TGAAAATTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGATGGCGAATCTTATCC
TTCCAAGGTAGTAGGGAAGAAAATATAAGCCACTAAC
Found at i:12327010 original size:78 final size:78
Alignment explanation
Indices: 12326881--12327027 Score: 228
Period size: 78 Copynumber: 1.9 Consensus size: 78
12326871 CCACTAACCT
*
12326881 TATCTCCTTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCTTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGA
12326946 AATAGGTGAATCC
66 AATAGGTGAATCC
12326959 TATCTCCCTT-GTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCA-ATCTCCCTGGTCAGCAG
1 TATCT-CCTTGGTCAGTAGTGGAATAGGTTGAAGATTAT-AAGT-CATATCTCCCTGGTCAGCAG
*
12327021 TGTAATA
63 TGAAATA
12327028 AGTTGAAGAT
Statistics
Matches: 64, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
78 56 0.88
79 8 0.12
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (78 bp):
TATCTCCTTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGA
AATAGGTGAATCC
Found at i:12327056 original size:386 final size:379
Alignment explanation
Indices: 12326275--12327019 Score: 987
Period size: 386 Copynumber: 2.0 Consensus size: 379
12326265 ACACTAGCCT
* * * * * * *
12326275 TATCTTCCTGGTCAGTAGTGGAATAGGTAGACGATTGTAAGTCCTGTCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAA-TCCTATCTCCCTAGTCAGCAATAG
* * * *
12326340 AATAGGCTGAAAATTGTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAATTATAGAT
65 AATAGGCTGAAAATTGGGAATCCTATATCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * *
12326405 CTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAG
130 CTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTACCTTCCCAAGGTAGTAG
* * * * * *
12326470 GGAAGTAGATTTAAGCCACTAGCCTTATCTTCATGGTTAGTAGGGGAATAGGTTGAAGATTGTAA
195 GGAAGAAAATGTAAGCCACTAACCTTATCTCCATGGTCAGTAGGGGAATAGGTTGAAGATTGTAA
* * * *
12326535 GTCCTATCTCCCTGGTCAGCAGTGGGATAGGTTAAAGATTGTGAGTCTTATCTCTCTTGTCAACA
260 GTCATATCTCCCTGGTCAGCAGT-GGATA-G--AAAG--TGTGAATCCTATCTCCCTTGTCAACA
* * *
12326600 GTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTAAGCAATGGAATAGGTGAATCA
319 GTGGAATAGGTTGAAGATTATAAGTACAATCTCCCTGGTAAGCAATGGAAGAGGTGAATCA
* *
12326661 TATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAATAG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AATCCTATCTCCCTAGTCAGCAATAG
* * * *
12326726 AATAGGTTGAAGATTGGGAATCCTATCTCCCTGACCAGTAGTGGAGTAGGTTGAAAATTACAGAT
65 AATAGGCTGAAAATTGGGAATCCTATATCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * *
12326791 CTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTACCTTCCTAAGGTAGTAG
130 CTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTACCTTCCCAAGGTAGTAG
* *
12326856 GGAAGAAAATGTAAGCCACTAACCTTATCTCCTTGGTCAGTAGTGGAATAGGTTGAAGATTGTAA
195 GGAAGAAAATGTAAGCCACTAACCTTATCTCCATGGTCAGTAGGGGAATAGGTTGAAGATTGTAA
* **
12326921 GTCATATCTCCCTGGTCAGCAGT-GA-A-ATAG-GTGAATCCTATCTCCCTTGTCAGTAGTGGAA
260 GTCATATCTCCCTGGTCAGCAGTGGATAGAAAGTGTGAATCCTATCTCCCTTGTCAACAGTGGAA
* *
12326982 TAGGTTGAAGATTATGAA-TCCAATCTCCCTGGTCAGCA
325 TAGGTTGAAGATTAT-AAGTACAATCTCCCTGGTAAGCA
12327020 GTGTAATAAG
Statistics
Matches: 315, Mismatches: 42, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
376 57 0.18
377 2 0.01
379 3 0.01
383 1 0.00
384 2 0.01
386 248 0.79
387 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (379 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAATCCTATCTCCCTAGTCAGCAATAGA
ATAGGCTGAAAATTGGGAATCCTATATCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGATC
TTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTACCTTCCCAAGGTAGTAGG
GAAGAAAATGTAAGCCACTAACCTTATCTCCATGGTCAGTAGGGGAATAGGTTGAAGATTGTAAG
TCATATCTCCCTGGTCAGCAGTGGATAGAAAGTGTGAATCCTATCTCCCTTGTCAACAGTGGAAT
AGGTTGAAGATTATAAGTACAATCTCCCTGGTAAGCAATGGAAGAGGTGAATCA
Found at i:12327091 original size:44 final size:43
Alignment explanation
Indices: 12326952--12327099 Score: 172
Period size: 44 Copynumber: 3.4 Consensus size: 43
12326942 GTGAAATAGG
* *
12326952 TGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTA
1 TGAATCCTATCTCCC-TGGCAGCAGTGGAATAGGTTGAAGATTA
* * * *
12326996 TGAATCCAATCTCCCTGGTCAGCAGTGTAATAAGTTGAAGATTG
1 TGAATCCTATCTCCCTGG-CAGCAGTGGAATAGGTTGAAGATTA
* * *
12327040 TGAATCCTATCTCCCTGAGCAGCAGTGGAGTGGGTTGAAAATTA
1 TGAATCCTATCTCCCTG-GCAGCAGTGGAATAGGTTGAAGATTA
12327084 T-AGATCCTATCTCCCT
1 TGA-ATCCTATCTCCCT
12327100 AAGCAGTAGT
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
43 3 0.03
44 84 0.95
45 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (43 bp):
TGAATCCTATCTCCCTGGCAGCAGTGGAATAGGTTGAAGATTA
Found at i:12327271 original size:44 final size:44
Alignment explanation
Indices: 12327174--12327260 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
12327164 ATAAGCCACT
* * *
12327174 AGCCTTATCTCCCTAGTCAGTAGTGGAATAGGTTAAAGATTGTA
1 AGCCGTATCTCCCTAGTCAGCAGGGGAATAGGTTAAAGATTGTA
* * * *
12327218 AGCCGTATCTCCTTGGTCAGCAGGGGAATAGGTTGACGATTGT
1 AGCCGTATCTCCCTAGTCAGCAGGGGAATAGGTTAAAGATTGT
12327261 GAGTCCTATC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (44 bp):
AGCCGTATCTCCCTAGTCAGCAGGGGAATAGGTTAAAGATTGTA
Found at i:12328659 original size:78 final size:78
Alignment explanation
Indices: 12328520--12328670 Score: 187
Period size: 78 Copynumber: 1.9 Consensus size: 78
12328510 CGATCCAACA
* * * * *
12328520 CTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGACTGTATGTCCAATCTCCTTGGCCAGCAGTG
1 CTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGACTGTATATCCAATCTCCCTAGCCAGCAATA
12328585 GAATAGGTGAATT
66 GAATAGGTGAATT
* * * * * *
12328598 CTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGA-ATCCTATCTCCCTAGTCAGCAAT
1 CTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGACTGT-ATATCCAATCTCCCTAGCCAGCAAT
12328662 AGAATAGGT
65 AGAATAGGT
12328671 TGAAGATTGT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
78 60 0.98
79 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (78 bp):
CTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGACTGTATATCCAATCTCCCTAGCCAGCAATA
GAATAGGTGAATT
Found at i:12328667 original size:44 final size:44
Alignment explanation
Indices: 12328591--12329961 Score: 303
Period size: 44 Copynumber: 31.8 Consensus size: 44
12328581 AGTGGAATAG
* * *
12328591 GTGAATTCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* *
12328635 GTGAATCCTATCTCCCTAGTCAGCAATAGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* *
12328679 GTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATT
1 GTGAATCCTATCTCCCT-AGTCAGCAGTGGAATAGGTTGAAGATT
** * * ** * * **
12328723 -ACAGATCTTATCT-CCTAAAGT-AGTAGTGGAGCAGATCGAAGACG
1 GTGA-ATCCTATCTCCCT--AGTCAGCAGTGGAATAGGTTGAAGATT
* ** * * * * * ***
12328767 GCGAATTTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCA
1 GTGAATCCTATC-TCCCTA-GTCAGCAGTGGAA-TAGGTTGAAGATT
* * * * * *
12328812 CT--AGCCTTATCTCCCTGGTCAGTAGAGAAATAGGTTGAAGATT
1 GTGAATCC-TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* *
12328855 GT-AAGTCATATCTCCCTGGTCAGCAGT-GAA-A---T--AG---
1 GTGAA-TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* * * *
12328889 GTGAATCCTTTTTCCCTTGTCAGTAGTGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* * * * *
12328933 ATGAGTCCTATCTCCCTGGTCAGCAGTGTAAAAGGTTGAAGATT
1 GTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* ** * *
12328977 GTGAATCCTATCTCCCTTGTCAATAGTGAAATAGGTTGAAAATT
1 GTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* * * * *
12329021 GTGAATCCTAGCTCCCTGAG-CAGAAGTGGAGTAGGTTAAAAATT
1 GTGAATCCTATCTCCCT-AGTCAGCAGTGGAATAGGTTGAAGATT
** * * * * **
12329065 ACAGAAGT--TATCTCCCTAAG-CAGTAGT-AAAGTAGATCGAAGACG
1 -GTGAA-TCCTATCTCCCT-AGTCAGCAGTGGAA-TAGGTTGAAGATT
* * * * * * * ***
12329109 GCGAATCTTATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCA
1 GTGAATCCTATC-TCCCTA-GTCAGCAGTGGAA-TAGGTTGAAGATT
* * * * * * *
12329154 CT--AGCCTTATCTTCCTGGTCAGTAGTGGAATAGGTTCACGATT
1 GTGAATCC-TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* *
12329197 GT-AAGTTCTATCTCCCTAGTCAGCAGTGGAATAGGCTGAAGATT
1 GTGAA-TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* * * *
12329241 GTGAATCCTATATCCCTGAG-CAGTAGTGGAGTAGGTTGCAAAATAT
1 GTGAATCCTATCTCCCT-AGTCAGCAGTGGAATAGGTTG-AAGAT-T
* * * ** * ** **
12329287 -AGATAT--TATCTCCCTAAGT-AGTAGTAGAGCAGATCAAAGACG
1 GTGA-ATCCTATCTCCCT-AGTCAGCAGTGGAATAGGTTGAAGATT
* * * * * * *
12329329 GCGATTCTTATCTTCCCAAGGT-AGTAG-GGAAGTAGATTGAAGCCACT
1 GTGAATCCTATC-TCCCTA-GTCAGCAGTGGAA-TAGGTTGAAG--ATT
* * * * * * *
12329376 -AG-CT-TTATCTCCCTGGTCAGTAGTGGAATAGGTTCACGATT
1 GTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* * *
12329417 GT-AAGTTCTCTCTCCCTAGTCAGCAGTGGAATAGGCTGAAGATT
1 GTGAA-TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* *
12329461 GTGAATCCTATCTCCCT-GCTCAGCAATGGAATAGGTTGAAGACT
1 GTGAATCCTATCTCCCTAG-TCAGCAGTGGAATAGGTTGAAGATT
* * * * *
12329505 GTGAATTCTATGTCCTTGAG-CAGCAGTGGAGTAGGTTGAAAATT
1 GTGAATCCTATCTCCCT-AGTCAGCAGTGGAATAGGTTGAAGATT
** * ** * ** * * **
12329549 -ACAGATCTTATCTCCAGAAG-CAGTAGTGGAGCAGATCGAAGACG
1 GTGA-ATCCTATCTCC-CTAGTCAGCAGTGGAATAGGTTGAAGATT
* * * * * * * * **
12329593 GCGATTCTTATCTGCCCAAGGT-AGTAG-GGAAGCAGATTTAAGACA
1 GTGAATCCTATCT-CCCTA-GTCAGCAGTGGAA-TAGGTTGAAGATT
* * * ***
12329638 CTG--GCCTTATATCCCT-GTTCTTTAGTGGAATAGGTTGAAGATT
1 GTGAATCC-TATCTCCCTAG-TCAGCAGTGGAATAGGTTGAAGATT
* * * *
12329681 -TTAAGTCTTATCTCCCTGGTCAGTAGT-GAA-A---T--AG---
1 GTGAA-TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
** * * *
12329715 GTGAATCCTATCTCAATGGTCAGCAGTGGGATAGGTTAAAGATT
1 GTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* * * *
12329759 GTGAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* *
12329803 GT-AAGTACTATCTCCCTGGTCAGCAGTGG-A-A---T--AG---
1 GTGAA-TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* * * * *
12329837 GTGAATCATATTTCCCTGGTCAGCAGTGGACTTGGTTGAAGATT
1 GTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* * *
12329881 GTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACT
1 GTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* *
12329925 GTGAATCCTATGTCCCTGAG-CAGCAGTGGAGTAGGTT
1 GTGAATCCTATCTCCCT-AGTCAGCAGTGGAATAGGTT
12329962 AAAAATTATA
Statistics
Matches: 973, Mismatches: 251, Indels: 206
0.68 0.18 0.14
Matches are distributed among these distances:
34 60 0.06
35 12 0.01
36 2 0.00
37 6 0.01
39 6 0.01
41 9 0.01
42 13 0.01
43 89 0.09
44 666 0.68
45 100 0.10
46 8 0.01
47 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
GTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
Found at i:12328952 original size:78 final size:78
Alignment explanation
Indices: 12328823--12328968 Score: 222
Period size: 78 Copynumber: 1.9 Consensus size: 78
12328813 TAGCCTTATC
*
12328823 TCCCTGGTCAGTAGAGAAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTG-AAAT
1 TCCCTGGTCAGTAGAGAAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGTAAA-
12328887 AGGTGAATCCTTTT
65 AGGTGAATCCTTTT
* * * * *
12328901 TCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGTAAAA
1 TCCCTGGTCAGTAGAGAAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGTAAAA
12328966 GGT
66 GGT
12328969 TGAAGATTGT
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 58 0.95
79 3 0.05
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (78 bp):
TCCCTGGTCAGTAGAGAAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGTAAAA
GGTGAATCCTTTT
Found at i:12329148 original size:342 final size:343
Alignment explanation
Indices: 12328598--12329236 Score: 989
Period size: 342 Copynumber: 1.9 Consensus size: 343
12328588 TAGGTGAATT
* * *
12328598 CTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAATA
1 CTATCTCCCTGGTCAGCAGTGGAAAAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAACAATA
* * * *
12328663 GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
66 GAATAGGTTGAAAATTGTGAATCCTAGCTCCCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAGA
* * ** *
12328728 TCTTATCTCCTAAAGTAGTAGTGGAGCAGATCGAAGACGGCGAATTTTATCTTCCCAAGGTAGTA
131 ACTTATCTCCTAAAGCAGTAGTAAAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTA
*
12328793 GGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGAGAAATAGGTTGAAGATTGTA
196 GGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGAGAAATAGGTTCAAGATTGTA
*
12328858 AG-TCATATCTCCCTGGTCAGCAGTGAAATAGG-TGAATCCTTTTTCCCTTGTCAGTAGTGGAAT
261 AGTTC-TATCTCCCTAGTCAGCAGTGAAATAGGCTGAATCCTTTTTCCCTTGTCAGTAGTGGAAT
12328921 AGGTTGAAGATTATGAGTC
325 AGGTTGAAGATTATGAGTC
* * * *
12328940 CTATCTCCCTGGTCAGCAGTGTAAAAGGTTGAAGATTGTGAATCCTATCTCCCTTGTCAATAGT-
1 CTATCTCCCTGGTCAGCAGTGGAAAAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAACAATA
12329004 GAAATAGGTTGAAAATTGTGAATCCTAGCTCCCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAG
66 G-AATAGGTTGAAAATTGTGAATCCTAGCTCCCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAG
* *
12329069 AAGTTATCTCCCT-AAGCAGTAGTAAAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAG
130 AACTTATCT-CCTAAAGCAGTAGTAAAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAG
* * * * *
12329133 TAGGGAAGCAGATTTAAGCCACTAGCCTTATCTTCCTGGTCAGTAGTGGAATAGGTTCACGATTG
194 TAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGAGAAATAGGTTCAAGATTG
*
12329198 TAAGTTCTATCTCCCTAGTCAGCAGTGGAATAGGCTGAA
259 TAAGTTCTATCTCCCTAGTCAGCAGTGAAATAGGCTGAA
12329237 GATTGTGAAT
Statistics
Matches: 267, Mismatches: 26, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
341 1 0.00
342 257 0.96
343 9 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (343 bp):
CTATCTCCCTGGTCAGCAGTGGAAAAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAACAATA
GAATAGGTTGAAAATTGTGAATCCTAGCTCCCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAGA
ACTTATCTCCTAAAGCAGTAGTAAAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTA
GGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGAGAAATAGGTTCAAGATTGTA
AGTTCTATCTCCCTAGTCAGCAGTGAAATAGGCTGAATCCTTTTTCCCTTGTCAGTAGTGGAATA
GGTTGAAGATTATGAGTC
Found at i:12329329 original size:220 final size:220
Alignment explanation
Indices: 12328941--12329478 Score: 785
Period size: 220 Copynumber: 2.4 Consensus size: 220
12328931 TTATGAGTCC
* * * * * * * **
12328941 TATCTCCCTGGTCAGCAGTGTAAAAGGTTGAAGATTGTGAA-TCCTATCTCCCTTGTCAATAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTCACGATTGT-AAGTTCTATCTCCCTAGTCAGCAGTG
* * * *
12329005 AAATAGGTTGAAAATTGTGAATCCTAGCTCCCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAGA
65 GAATAGGCTGAAGATTGTGAATCCTATCTCCCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAGA
* *
12329070 AGTTATCTCCCTAAGCAGTAGTAAAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTA
130 AGTTATCTCCCTAAGCAGTAGTAAAGCAGATCAAAGACGGCGAATCTTATCTTCCCAAGGTAGTA
*
12329135 GGGAAGCAGATTTAAGCCACTAGCCT
195 GGGAAGCAGATTGAAGCCACTAGCCT
*
12329161 TATCTTCCTGGTCAGTAGTGGAATAGGTTCACGATTGTAAGTTCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTCACGATTGTAAGTTCTATCTCCCTAGTCAGCAGTGG
* * * *
12329226 AATAGGCTGAAGATTGTGAATCCTATATCCCTGAGCAGTAGTGGAGTAGGTTGCAAAA-TATAGA
66 AATAGGCTGAAGATTGTGAATCCTATCTCCCTGAGCAGAAGTGGAGTAGGTT-AAAAATTACAGA
* * *
12329290 TA-TTATCTCCCTAAGTAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATCTTCCCAAGGTAGT
130 -AGTTATCTCCCTAAGCAGTAGTAAAGCAGATCAAAGACGGCGAATCTTATCTTCCCAAGGTAGT
* *
12329354 AGGGAAGTAGATTGAAGCCACTAGCTT
194 AGGGAAGCAGATTGAAGCCACTAGCCT
*
12329381 TATCTCCCTGGTCAGTAGTGGAATAGGTTCACGATTGTAAGTTCTCTCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTCACGATTGTAAGTTCTATCTCCCTAGTCAGCAGTGG
12329446 AATAGGCTGAAGATTGTGAATCCTATCTCCCTG
66 AATAGGCTGAAGATTGTGAATCCTATCTCCCTG
12329479 CTCAGCAATG
Statistics
Matches: 286, Mismatches: 29, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
219 2 0.01
220 279 0.98
221 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (220 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTCACGATTGTAAGTTCTATCTCCCTAGTCAGCAGTGG
AATAGGCTGAAGATTGTGAATCCTATCTCCCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAGAA
GTTATCTCCCTAAGCAGTAGTAAAGCAGATCAAAGACGGCGAATCTTATCTTCCCAAGGTAGTAG
GGAAGCAGATTGAAGCCACTAGCCT
Found at i:12329666 original size:264 final size:263
Alignment explanation
Indices: 12329159--12329719 Score: 716
Period size: 264 Copynumber: 2.1 Consensus size: 263
12329149 AGCCACTAGC
* * * * * *
12329159 CTTATCTTCCTGGTCAGTAGTGGAATAGGTTCACGATTGTAAGTTCTATCTCCCTAGTCAGCAGT
1 CTTATCTCCCTAGTCAGTAGTGGAATAGG-TGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAAT
* * *
12329224 GGAATAGGCTGAAGATTGTGAATCCTATATCCCTGAGCAGTAGTGGAGTAGGTTGCAAAATATAG
65 GGAATAGGCTGAAGACTGTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAAATACAG
** * *
12329289 ATATTATCTCCCTAAGTAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATCTTCCCAAGGTAGT
130 ATATTATCTCCAGAAGCAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATCTGCCCAAGGTAGT
* * * * *
12329354 AGGGAAGTAGATTGAAGCCACTAGCTTTATCTCCCTGGTCAGTAGTGGAATAGGTTCACGATTGT
195 AGGGAAGCAGATTGAAGACACTAGCCTTATATCCCTGGTCAGTAGTGGAATAGGTTCAAGATTGT
12329419 AAGT
260 AAGT
* *
12329423 -TCTCTCTCCCTAGTCAGCAGTGGAATAGGCTGAAGATTGTGAA-TCCTATCTCCCT-GCTCAGC
1 CT-TATCTCCCTAGTCAGTAGTGGAATAGG-TGAAGATTGT-AAGTCCTATCTCCCTAG-TCAGC
* * * *
12329485 AATGGAATAGGTTGAAGACTGTGAATTCTATGTCCTTGAGCAGCAGTGGAGTAGGTTG-AAAATT
62 AATGGAATAGGCTGAAGACTGTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAAA-T
* * *
12329549 ACAGATCTTATCTCCAGAAGCAGTAGTGGAGCAGATCGAAGACGGCGATTCTTATCTGCCCAAGG
126 ACAGATATTATCTCCAGAAGCAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATCTGCCCAAGG
* * * ** *
12329614 TAGTAGGGAAGCAGATTTAAGACACTGGCCTTATATCCCTGTTCTTTAGTGGAATAGGTTGAAGA
191 TAGTAGGGAAGCAGATTGAAGACACTAGCCTTATATCCCTGGTCAGTAGTGGAATAGGTTCAAGA
*
12329679 TTTTAAGT
256 TTGTAAGT
* *
12329687 CTTATCTCCCTGGTCAGTAGTGAAATAGGTGAA
1 CTTATCTCCCTAGTCAGTAGTGGAATAGGTGAA
12329720 TCCTATCTCA
Statistics
Matches: 253, Mismatches: 39, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
263 10 0.04
264 240 0.95
265 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (263 bp):
CTTATCTCCCTAGTCAGTAGTGGAATAGGTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAATG
GAATAGGCTGAAGACTGTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAAATACAGA
TATTATCTCCAGAAGCAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATCTGCCCAAGGTAGTA
GGGAAGCAGATTGAAGACACTAGCCTTATATCCCTGGTCAGTAGTGGAATAGGTTCAAGATTGTA
AGT
Found at i:12329818 original size:122 final size:122
Alignment explanation
Indices: 12329661--12329952 Score: 376
Period size: 122 Copynumber: 2.4 Consensus size: 122
12329651 CCTGTTCTTT
* * *
12329661 AGTGGAATAGGTTGAAGATTTTAAGTCTTATCTCCCTGGTCAGTAGTGAAATAGGTGAATCCTAT
1 AGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGAAATAGGTGAATCATAT
* *
12329726 CTCAATGGTCAGCAGTGGGA-TAGGTTAAAGATTGTGAGTCTTATCTCCCTGGTCAAC
66 CTCAATGGTCAGCAGT-GGACTAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAAC
*
12329783 AGTGGAATAGGTTGAAGATTGTAAGTAC-TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATA
1 AGTGGAATAGGTTGAAGATTGTAAGT-CTTATCTCCCTGGTCAGCAGTGAAATAGGTGAATCATA
* ** * * *
12329847 TTTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGC
65 TCTCAATGGTCAGCAGTGGACTAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAAC
* * * *
12329905 AATGGAATAGGTTGAAGACTGTGAA-TCCTATGTCCCTGAG-CAGCAGTG
1 AGTGGAATAGGTTGAAGATTGT-AAGTCTTATCTCCCTG-GTCAGCAGTG
12329953 GAGTAGGTTA
Statistics
Matches: 150, Mismatches: 15, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
121 4 0.03
122 142 0.95
123 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (122 bp):
AGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGAAATAGGTGAATCATAT
CTCAATGGTCAGCAGTGGACTAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAAC
Found at i:12329853 original size:78 final size:78
Alignment explanation
Indices: 12329771--12329916 Score: 231
Period size: 78 Copynumber: 1.9 Consensus size: 78
12329761 GAGTCTTATC
*
12329771 TCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAGTACTATCTCCCTGGTCAGCAGTGGAAT
1 TCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAA-TACTATCTCCCTGGTCAGCAATGGAAT
12329835 AGGTGAATCATATT
65 AGGTGAATCATATT
* * * *
12329849 TCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAATA
1 TCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATACTATCTCCCTGGTCAGCAATGGAATA
12329914 GGT
66 GGT
12329917 TGAAGACTGT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 60 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (78 bp):
TCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATACTATCTCCCTGGTCAGCAATGGAATA
GGTGAATCATATT
Found at i:12330162 original size:44 final size:43
Alignment explanation
Indices: 12330112--12330579 Score: 240
Period size: 44 Copynumber: 10.9 Consensus size: 43
12330102 CCTTATTCTT
* *
12330112 TAGTGGAATAGGTTGAAGATTTTAAGTCTTATCTCCCTGGTCAG
1 TAGTGGAATAGGTTGAAGATTTGAA-TCCTATCTCCCTGGTCAG
*
12330156 TAGTGGAATAGGTTGAAGA-TTGTAAGTCATATCTCCCTGGTCAG
1 TAGTGGAATAGGTTGAAGATTTG-AA-TCCTATCTCCCTGGTCAG
* * *
12330200 CAGTGAAATAGG-TG-A-ATCTT--AT-C---C-CCCTTGTCAG
1 TAGTGGAATAGGTTGAAGAT-TTGAATCCTATCTCCCTGGTCAG
*
12330234 TAGTGGAATATGTTGAAGATTATGAATCCTATCTCCCTGGTCAG
1 TAGTGGAATAGGTTGAAGATT-TGAATCCTATCTCCCTGGTCAG
*
12330278 TAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAG
1 TAGTGGAATAGGTTGAAGATT-TGAATCCTATCTCCCTG-GTCAG
* * * ** *
12330322 CAGTGGAGTAGGTTGAAAATTACAGATCCTATCTCCCTAAG-CAG
1 TAGTGGAATAGGTTGAAGATTTGA-ATCCTATCTCCCT-GGTCAG
* ** * *** * * **
12330366 TAGTAGAGCAGATTGAAGACGGCGATTCTTATCTTTCCAAGGT-AG
1 TAGTGGAATAGGTTGAAGA-TTTGAATCCTATC--TCCCTGGTCAG
* ** ** * *
12330411 TAG-GGAAGCAAATTTCAGCCA-CT--AGCCTTATCTCCCTGGTCAG
1 TAGTGGAA-TAGGTTGAAG--ATTTGAATCC-TATCTCCCTGGTCAG
* *
12330454 TAGTGGGATATGTTGAAGA-TTGTAAGTCCTATCTCCCTGGTCAG
1 TAGTGGAATAGGTTGAAGATTTG-AA-TCCTATCTCCCTGGTCAG
*
12330498 CAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAG
1 TAGTGGAATAGGTTGAAGATT-TGAATCCTATCTCCCTG-GTCAG
* * * *
12330542 CAGTAGAGTAGGTTGAAAATTAT-AGATCCTATCTCCCT
1 TAGTGGAATAGGTTGAAGATT-TGA-ATCCTATCTCCCT
12330580 AAGCAGTAGT
Statistics
Matches: 328, Mismatches: 61, Indels: 70
0.71 0.13 0.15
Matches are distributed among these distances:
34 18 0.05
35 3 0.01
36 2 0.01
37 3 0.01
39 3 0.01
40 2 0.01
41 3 0.01
42 7 0.02
43 20 0.06
44 240 0.73
45 21 0.06
46 5 0.02
47 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TAGTGGAATAGGTTGAAGATTTGAATCCTATCTCCCTGGTCAG
Found at i:12330267 original size:78 final size:78
Alignment explanation
Indices: 12330138--12330290 Score: 227
Period size: 78 Copynumber: 2.0 Consensus size: 78
12330128 AGATTTTAAG
* *
12330138 TCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAG
1 TCTTATCCCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAG
12330203 TGAAATAGGTGAA
66 TGAAATAGGTGAA
* * * *
12330216 TCTTATCCCCCTTGTCAGTAGTGGAATATGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGTA
1 TCTTATCCCCCTGGTCAGTAGTGGAATAGGTTGAAGATTAT-AAGTCATATCTCCCTGGTCAGCA
*
12330280 GTGTAATAGGT
65 GTGAAATAGGT
12330291 TGAAGATTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 65 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (78 bp):
TCTTATCCCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAG
TGAAATAGGTGAA
Found at i:12330492 original size:220 final size:220
Alignment explanation
Indices: 12330217--12330734 Score: 887
Period size: 220 Copynumber: 2.4 Consensus size: 220
12330207 ATAGGTGAAT
* * * *
12330217 CTTATCCCCCTTGTCAGTAGTGGAATATGTTGAAGATTATGAATCCTATCTCCCTGGTCAGTAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATATGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGT
* *
12330282 GTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAG
66 GGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAAATTACAG
12330347 ATCCTATCTCCCTAAGCAGTAGTAGAGCAGATTGAAGACGGCGATTCTTATCTTTCCAAGGTAGT
131 ATCCTATCTCCCTAAGCAGTAGTAGAGCAGATTGAAGACGGCGATTCTTATCTTTCCAAGGTAGT
12330412 AGGGAAGCAAATTTCAGCCACTAGC
196 AGGGAAGCAAATTTCAGCCACTAGC
*
12330437 CTTATCTCCCTGGTCAGTAGTGGGATATGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAG
1 CTTATCTCCCTGGTCAGTAGTGGAATATGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAG
*
12330501 TGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAAATTATA
65 TGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAAATTACA
12330566 GATCCTATCTCCCTAAGCAGTAGTAGAGCAGATTGAAGACGGCGATTCTTATCTTTCCAAGGTAG
130 GATCCTATCTCCCTAAGCAGTAGTAGAGCAGATTGAAGACGGCGATTCTTATCTTTCCAAGGTAG
12330631 TAGGGAAGCAAATTTCAGCCACTAGC
195 TAGGGAAGCAAATTTCAGCCACTAGC
* ** *
12330657 CTTAACTCCCTGGTCAGTAGTGTCATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGCAG
1 CTTATCTCCCTGGTCAGTAGTGGAATATGTTGAAGATTGTGAATCCTATCTCCCTG-GTCAGCAG
*
12330721 TGGAGTAGGTTGAA
65 TGGAATAGGTTGAA
12330735 AATTACAGAT
Statistics
Matches: 282, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
219 2 0.01
220 277 0.98
221 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (220 bp):
CTTATCTCCCTGGTCAGTAGTGGAATATGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGT
GGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAAATTACAG
ATCCTATCTCCCTAAGCAGTAGTAGAGCAGATTGAAGACGGCGATTCTTATCTTTCCAAGGTAGT
AGGGAAGCAAATTTCAGCCACTAGC
Found at i:12330585 original size:44 final size:43
Alignment explanation
Indices: 12330480--12330602 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 43
12330470 AGATTGTAAG
* * * * *
12330480 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA
1 TCCTATCTCCCTAG-CAGCAGTAGAGTAGGTTGAAAATTATGAA
12330524 TCCTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAAATTAT-AGA
1 TCCTATCTCCCT-AGCAGCAGTAGAGTAGGTTGAAAATTATGA-A
* * *
12330568 TCCTATCTCCCTAAGCAGTAGTAGAGCAGATTGAA
1 TCCTATCTCCCT-AGCAGCAGTAGAGTAGGTTGAA
12330603 GACGGCGATT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 1 0.01
44 66 0.97
45 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
TCCTATCTCCCTAGCAGCAGTAGAGTAGGTTGAAAATTATGAA
Found at i:12330619 original size:176 final size:173
Alignment explanation
Indices: 12330486--12330829 Score: 474
Period size: 176 Copynumber: 2.0 Consensus size: 173
12330476 TAAGTCCTAT
12330486 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTAGAGT
1 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTAGAGT
* * * *
12330551 AGGTTGAAAATTATAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATTGAAGACGGCGATTCTT
66 AGGTTGAAAATTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTT
* *
12330616 ATCTTTCCAAGGTAGTAGGGAAGCAAATTTCAGCCACTAGCCTTAA
131 ATC--TCCAAGGTAGTAGGG-AGCAAATTTAAGACACTAGCCTTAA
* ** *
12330662 CTCCCTGGTCAGTAGTGTCATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGT
1 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTAGAGT
* * * *
12330727 AGGTTGAAAATTACAGATCTTATCTCCCAAAGCTGTAGTGGAGCAGATCGAAGACTGCGAATCTT
66 AGGTTGAAAATTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTT
* *
12330792 ATCTTCCCAAGGCAGTAGGGAAG-AACATTTAAGCCACT
131 ATC-T-CCAAGGTAGTAGGG-AGCAA-ATTTAAGACACT
12330830 CATTGTCTCC
Statistics
Matches: 152, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
175 4 0.03
176 148 0.97
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.26
Consensus pattern (173 bp):
CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTAGAGT
AGGTTGAAAATTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTT
ATCTCCAAGGTAGTAGGGAGCAAATTTAAGACACTAGCCTTAA
Found at i:12330969 original size:44 final size:44
Alignment explanation
Indices: 12330903--12331250 Score: 174
Period size: 44 Copynumber: 7.9 Consensus size: 44
12330893 AGTGAAATAG
*
12330903 GTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT
* ** *
12330947 GTGAATCCTATCTCTCTGGTCAGTAGTGTTATAGGTTGTAGATT
1 GTGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT
*** * * * *
12330991 ACAAATCCTATCTCCCTGAG-CAGCAATGGAGTAGGTTGAAAATT
1 GTGAATCCTATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATT
** * ** * * * * **
12331035 -ACAGATCTTATCTCCCAAAG-CAGTAGTAGAGTAGATCGAAGACG
1 GTGA-ATCCTATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATT
* * * * * ***
12331079 GCGATTCTTATCTTCCCAAGG-CAGTAG-GGAAGT-GGATTTAAGCCA
1 GTGAATCCTATC-TCCC-TGGTCAGTAGTGGAA-TAGG-TTGAAGATT
* * *
12331124 CT--AGCCTTATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATT
1 GTGAATCC-TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT
* **
12331167 GT-AAGTCCTATCTCCCTAAGTCAACAGTGGAATAGGTTGAAGATT
1 GTGAA-TCCTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATT
* * **
12331212 CTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGA
1 GTGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGA
12331251 TGTACATATA
Statistics
Matches: 229, Mismatches: 60, Indels: 30
0.72 0.19 0.09
Matches are distributed among these distances:
42 2 0.01
43 18 0.08
44 149 0.65
45 59 0.26
46 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (44 bp):
GTGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT
Found at i:12331200 original size:45 final size:44
Alignment explanation
Indices: 12331131--12331246 Score: 160
Period size: 45 Copynumber: 2.6 Consensus size: 44
12331121 CCACTAGCCT
* ** *
12331131 TATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTCC
1 TATCTCCCTAGTCAACAGTGGAATAGGCTGAAGATTCTAAGTCC
* *
12331175 TATCTCCCTAAGTCAACAGTGGAATAGGTTGAAGATTCTGAGTCC
1 TATCTCCCT-AGTCAACAGTGGAATAGGCTGAAGATTCTAAGTCC
*
12331220 TATCTCCCTGGTCAACAGTGGAATAGG
1 TATCTCCCTAGTCAACAGTGGAATAGG
12331247 TTGATGTACA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
44 26 0.41
45 38 0.59
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (44 bp):
TATCTCCCTAGTCAACAGTGGAATAGGCTGAAGATTCTAAGTCC
Found at i:12336424 original size:11 final size:11
Alignment explanation
Indices: 12336408--12336445 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
12336398 GATCCAATTA
12336408 AAAAAAAACCC
1 AAAAAAAACCC
*
12336419 AAAAAAAACAC
1 AAAAAAAACCC
12336430 AAAAAAAA-CC
1 AAAAAAAACCC
12336440 AAAAAA
1 AAAAAA
12336446 GAAAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 7 0.28
11 18 0.72
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAACCC
Found at i:12336486 original size:20 final size:20
Alignment explanation
Indices: 12336449--12336485 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
12336439 CAAAAAAGAA
12336449 AAAAAATCAAAATCAAAATT
1 AAAAAATCAAAATCAAAATT
*
12336469 AAAAAATGAAAA-CAAAA
1 AAAAAATCAAAATCAAAA
12336486 AAAGAAAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.76, C:0.08, G:0.03, T:0.14
Consensus pattern (20 bp):
AAAAAATCAAAATCAAAATT
Found at i:12337694 original size:44 final size:44
Alignment explanation
Indices: 12337626--12338675 Score: 934
Period size: 44 Copynumber: 24.5 Consensus size: 44
12337616 TTTATCTCTT
* *
12337626 TGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTACCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
* * * *
12337670 TGGTCAGCAGTGGAATATGCTGAAGATGGTGAA-T-CTAATCTTCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCT-ATCTCCC
* *
12337714 TGGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
*
12337758 TGGTAAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
* *
12337802 TGGTCAGCAGTGGAATAGATTTAAGATTGTAAGTCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
*
12337846 TAGTCAGCAGTGGAATA----G--G--TG-AA-TCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
* * *
12337880 TGGTTAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCTC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
*
12337924 TGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
* * * * *
12337968 TAGTCAGCAGTCGAACAGGTTGAAGATTTTGAGTCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
*
12338012 TGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
* * * *
12338056 TGGTCAGCAGTGGAATAGGTTGAAGGTTTTAAGTTCTATATCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
*
12338100 TGGTCAGCAGTGGAATA----G--GA--G-AA-TCCCATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
12338134 TGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCC
* * * * *
12338178 TAGTTAGTAGTGGAATAGGTTAAAGATTATGAA-TCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCC
* * * *
12338222 TGAG-AAACAGTGGAGTAGGTTGAAGATTATGAA-TCCTATCTCCC
1 TG-GTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCC
* * * * * *
12338266 TGAG-AAACAGTGGAGTAGGTTTAA-AAT-TACAGATCTTATCTCCC
1 TG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCCTATCTCCC
* * * * * * ** **
12338310 TAAG-CAGTAGTAGAGTAGATCGAAGACGGTGAA-TTTTATCTTCCC
1 T-GGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATC-TCCC
* * * ** * * ****
12338355 AAGGT-AGTAG-AGAGGCAGATTTAAGCCACT-AG-CCTTATCTCCC
1 -TGGTCAGCAGTGGA-ATAGGTTGAAGATTGTAAGTCC-TATCTCCC
* *
12338398 TGGTCAGTAGTGGAATAAGTTGAAGATTGTAAGTCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
*
12338442 TGGTCAGCAGTGG-A-A---T-ACG--TG-AA-TCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
* * *
12338476 TGGTCAACAATGGAATAGGTTGAAGATTGTGAGTCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
12338520 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
* *
12338564 TGGTCAGCAGTGGAGTAGGTTGAAGATTGTGAGTCCTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
* *
12338608 TGGTCAGCAGTGGAGTAGGTTGAAGATTGT-AGACCTTATCTCCC
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC-TATCTCCC
* * *
12338652 TAAG-CAGCAGTAGAGTAGGTTGAA
1 T-GGTCAGCAGTGGAATAGGTTGAA
12338676 AATTACAGAT
Statistics
Matches: 843, Mismatches: 109, Indels: 108
0.80 0.10 0.10
Matches are distributed among these distances:
34 73 0.09
35 7 0.01
36 5 0.01
38 6 0.01
39 2 0.00
40 6 0.01
41 1 0.00
42 11 0.01
43 29 0.03
44 671 0.80
45 29 0.03
46 2 0.00
47 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (44 bp):
TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
Found at i:12337878 original size:34 final size:34
Alignment explanation
Indices: 12337835--12337899 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
12337825 AGATTGTAAG
12337835 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
* *
12337869 TCCTATCTCCCTGGTTAGCAGTGGAATAGGT
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGT
12337900 TGAAGATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (34 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
Found at i:12338027 original size:210 final size:210
Alignment explanation
Indices: 12337654--12338675 Score: 724
Period size: 210 Copynumber: 4.8 Consensus size: 210
12337644 GTTGAAGATT
*
12337654 GTAAGTCCTACCTCCCTGGTCAGCAGTGGAATATGCTGAAGATGGTGAAT-CTAATCT-TCCTGG
1 GTAAGTCCTATCTCCCTGGTCAGCAGTGGAATA-G-TGAAGAT-GTG-ATCCT-ATCTCT-CTGG
* *
12337717 TCAGTAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTAAGCAGTGGAATAGGTTGAA
60 TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTAAGCAGTGGAATAGGTTGAA
* * * *
12337782 GATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGATTTAAGATTGTAAGTCCTATCTCCCT
125 GATTATGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT
12337847 AGTCAGCAGTGGAATAGG-T-
190 AGTCAGCAGTGGAATAGGTTA
*
12337866 G-AA-TCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCTCTGGTC
1 GTAAGTCCTATCTCCCTGGTCAGCAGTGGAATA-G-TGAAGA-TGTGA-TCCTATCTCTCTGGTC
* * *
12337929 AGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTCGAACAGGTTGAAGA
62 AGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTAAGCAGTGGAATAGGTTGAAGA
* * *
12337994 TTTTGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGG
127 TTATGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAG
12338059 TCAGCAGTGGAATAGGTTGAA
192 TCAGCAGTGGAATAGGTT--A
* * * *
12338080 GGTTTTAAGTTCTATATCCCTGGTCAGCAGTGGAATAG-G-AGA----ATCCCATCTCCCTGGTC
1 -G---TAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGTGAAGATGTGATCCTATCTCTCTGGTC
* * * *
12338139 AGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTAGTTAGTAGTGGAATAGGTTAAAG
62 AGTAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTAGTAAGCAGTGGAATAGGTTGAAG
* * * * *
12338203 ATTATGAATCCTATCTCCCTGAG-AAACAGTGGAGTAGGTTGAAGATTATGAA-TCCTATCTCCC
126 ATTATGAGTCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCC
* * *
12338266 TGAG-AAACAGTGGAGTAGGTTTAAAA
189 T-AGTCAGCAGTGGAATAGG-TT---A
* * * * * * * ** *
12338292 TTACAGATCTTATCTCCCTAAG-CAGTAGTAGAGTAGATCGAAGACGGTGAATTTTATCTTCCCA
1 GTA-AG-TCCTATCTCCCT-GGTCAGCAGTGGAATAG-T-GAAGA-TGTG-ATCCTATC-TCTC-
* * ** * * **** * * * *
12338356 AGGT-AGTAG-AGAGGCAGATTTAAGCCACT-AG-CCTTATCTCCCTGGTCAGTAGTGGAATAAG
57 TGGTCAGTAGTGGA-ATAGGTTGAAGATTGTAAGTCC-TATCTCCCTAGTAAGCAGTGGAATAGG
* * *
12338417 TTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG-A-A---T-ACG--TG-AA-TCCTATC
120 TTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATC
* * *
12338472 TCCCTGGTCAACAATGGAATAGGTTGAAGA
185 TCCCTAGTCAGCAGTGGAATAGGTT----A
* * *
12338502 TTGTGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGG
1 --GTAAGTCCTATCTCCCTGGTCAGCAGTGGAATA-G-TGAAGA-TGTGA-TCCTATCTCTCTGG
* * * * * *
12338567 TCAGCAGTGGAGTAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAA
60 TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTAAGCAGTGGAATAGGTTGAA
* * * * *
12338632 GATTGT-AGACCTTATCTCCCTAAG-CAGCAGTAGAGTAGGTTGAA
125 GATTATGAGTCC-TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAA
12338676 AATTACAGAT
Statistics
Matches: 644, Mismatches: 108, Indels: 112
0.75 0.12 0.13
Matches are distributed among these distances:
208 5 0.01
209 29 0.05
210 454 0.70
211 23 0.04
212 6 0.01
213 1 0.00
214 5 0.01
215 3 0.00
216 4 0.01
217 1 0.00
218 1 0.00
219 7 0.01
220 86 0.13
221 16 0.02
222 3 0.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (210 bp):
GTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGTGAAGATGTGATCCTATCTCTCTGGTCAGTA
GTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTAAGCAGTGGAATAGGTTGAAGATTAT
GAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAG
CAGTGGAATAGGTTA
Found at i:12338108 original size:254 final size:254
Alignment explanation
Indices: 12337626--12338627 Score: 1072
Period size: 254 Copynumber: 3.9 Consensus size: 254
12337616 TTTATCTCTT
* * * *
12337626 TGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTACCTCCCTGGTCAGCAGTGGAATATGCT
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTT
* * * **
12337691 GAAGATGGTGAAT-CTAATCTTCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCCTATCT
66 GAAGATTGTGAATCCT-ATCTCCCTAGTCAACAGTGGAATAGGTTGAAGATTGTGAGTCCTATCT
12337755 CCCTGGTAAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAG
130 CCCTGGTAAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAG
* *
12337820 ATTTAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAATCCTATCTCCC
195 ATTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCC
* * * *
12337880 TGGTTAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCTCTGGTCAGTAGTGGAATAGGTT
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTT
* * * *
12337945 GAAGATTGT-AAGTCCTATCTCCCTAGTCAGCAGTCGAACAGGTTGAAGATTTTGAGTCCTATCT
66 GAAGATTGTGAA-TCCTATCTCCCTAGTCAACAGTGGAATAGGTTGAAGATTGTGAGTCCTATCT
* *
12338009 CCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAGCAGTGGAATAG
130 CCCTGGTAAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAG
* * * * * * *
12338074 GTTGAAGGTTTTAAGTTCTATATCCCTGGTCAGCAGTGGAATAGGAGAATCCCATCTCCC
195 ATTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCC
* * *
12338134 TGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTAGTTAGTAGTGGAATAGGT
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGT
* * * * * *
12338198 TAAAGATTATGAATCCTATCTCCCTGAG-AAACAGTGGAGTAGGTTGAAGATTATGAATCCTATC
65 TGAAGATTGTGAATCCTATCTCCCT-AGTCAACAGTGGAATAGGTTGAAGATTGTGAGTCCTATC
* * * * * * * *
12338262 TCCCTGAG-AAACAGTGGAGTAGGTTTAA-AAT-TACAGATCTTATCTCCCTAAG-CAGTAGTAG
129 TCCCTG-GTAAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCCTATCTCCCT-GGTCAGCAGTGG
* * ** ** * * * * **
12338323 AGTAGATCGAAGACGGTGAA-TTTTATCTTCCCAAGGT-AGTAGAGAGGCAGATTTAAGCCACTA
190 AATAGATTGAAGATTGT-AAGTCCTATC-TCCC-TGGTCAG--CAGTGG-A-A--TAGGTGA--A
*
12338386 GCCTTATCTCCC
244 TCC-TATCTCCC
* *
12338398 TGGTCAGTAGTGGAATAAGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG-A-A---T
1 TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTT
* * *
12338458 ----A-CGTGAATCCTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAGTCCTATCTC
66 GAAGATTGTGAATCCTATCTCCCTAGTCAACAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTC
* * *
12338518 CCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAGTAGG
131 CCTGGTAAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGA
* *
12338583 TTGAAGATTGTGAGTCCTATCTCCCTGGTCAGCAGTGGAGTAGGT
196 TTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGT
12338628 TGAAGATTGT
Statistics
Matches: 617, Mismatches: 102, Indels: 65
0.79 0.13 0.08
Matches are distributed among these distances:
247 3 0.00
250 1 0.00
251 4 0.01
252 4 0.01
253 16 0.03
254 488 0.79
255 22 0.04
256 5 0.01
257 4 0.01
258 1 0.00
259 2 0.00
261 4 0.01
262 1 0.00
263 6 0.01
264 56 0.09
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (254 bp):
TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTT
GAAGATTGTGAATCCTATCTCCCTAGTCAACAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTC
CCTGGTAAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGA
TTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCC
Found at i:12338690 original size:44 final size:44
Alignment explanation
Indices: 12338524--12338878 Score: 192
Period size: 44 Copynumber: 8.1 Consensus size: 44
12338514 TCTCCCTGGT
* * * *
12338524 CAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCCTATCTCCCT-GG
1 CAGCAGTAGAGTAGGTTGAAGA-T-TACAGATCTTATCTCCCTAAG
* ** * *
12338567 TCAGCAGTGGAGTAGGTTGAAGATT-GTGAGTCCTATCTCCCT-GG
1 -CAGCAGTAGAGTAGGTTGAAGATTACAGA-TCTTATCTCCCTAAG
* ** *
12338611 TCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAG
1 -CAGCAGTAGAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAG
*
12338656 CAGCAGTAGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAG
1 CAGCAGTAGAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAG
** * * * * ***
12338700 TTGTAGTAGAGCAGATCGAAGACGGC-GATTCTTATCTTCCC-AAG
1 CAGCAGTAGAGTAGGTTGAAGATTACAGA-TCTTATC-TCCCTAAG
* * * * *** * * *
12338744 --GTAGTAGGGAAGCAGATTTAA-CCCACTAG-CCTTATCTCTCTGAG
1 CAGCAGTA--G-AGTAGGTTGAAGATTAC-AGATCTTATCTCCCTAAG
* ** *
12338788 CAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAG
1 CAGCAGTAGAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAG
*
12338832 CAGCAGTAGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAG
1 CAGCAGTAGAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAG
12338876 CAG
1 CAG
12338879 TAGTGGAGCA
Statistics
Matches: 247, Mismatches: 47, Indels: 34
0.75 0.14 0.10
Matches are distributed among these distances:
42 8 0.03
43 16 0.06
44 202 0.82
45 16 0.06
46 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (44 bp):
CAGCAGTAGAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAG
Found at i:12338692 original size:88 final size:88
Alignment explanation
Indices: 12338512--12338872 Score: 294
Period size: 88 Copynumber: 4.1 Consensus size: 88
12338502 TTGTGAGTCC
* * *
12338512 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC-TATCTCCCT-GGTCAGCAGT
1 TATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAGATTGT-AGACCTTATCTCCCTAAG-CAGCAGT
* * ** *
12338575 GGAGTAGGTTGAAGATT-GTGAGTCC
64 AGAGTAGGTTGAAAATTACAGA-TCT
12338600 TATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAGCAGCAGTAG
1 TATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAGCAGCAGTAG
12338665 AGTAGGTTGAAAATTACAGATCT
66 AGTAGGTTGAAAATTACAGATCT
* * * * * * * * ** * *
12338688 TATCTCCCTAAGT-TGTAGTAGAGCAGATCGAAGA-CGGCGATTCTTATCTTCCC-AAG--GTAG
1 TATCTCCCT-GGTCAGCAGTGGAGTAGGTTGAAGATTGTAGA-CCTTATC-TCCCTAAGCAGCAG
* * * *** *
12338748 TAGGGAAGCAGATT-TAACCCACTAG-CCT
63 TA--G-AGTAGGTTGAAAATTAC-AGATCT
*
12338776 TATCTCTCTGAG-CAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAGCAGCAGTA
1 TATCTCCCTG-GTCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAGCAGCAGTA
12338840 GAGTAGGTTGAAAATTACAGATCT
65 GAGTAGGTTGAAAATTACAGATCT
12338864 TATCTCCCT
1 TATCTCCCT
12338873 AAGCAGTAGT
Statistics
Matches: 207, Mismatches: 48, Indels: 36
0.71 0.16 0.12
Matches are distributed among these distances:
86 5 0.02
87 19 0.09
88 158 0.76
89 20 0.10
90 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (88 bp):
TATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAGCAGCAGTAG
AGTAGGTTGAAAATTACAGATCT
Found at i:12338721 original size:132 final size:132
Alignment explanation
Indices: 12338460--12338721 Score: 291
Period size: 132 Copynumber: 2.0 Consensus size: 132
12338450 AGTGGAATAC
* *
12338460 GTGAATCCTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTC
1 GTGAATCCTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAGACCTATCTCCCTAGTC
* * * * * * *
12338525 AGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAGA
66 AGCAGTAGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTAGTCAGCAGTAGAGCAGATCGAAGA
12338590 TT
131 TT
* * * *
12338592 GTGAGTCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAGATTGT-AGACCTTATCTCCCTAAG
1 GTGAATCCTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAGACC-TATCTCCCT-AG
* * * *
12338656 -CAGCAGTAGAGTAGGTTGAA-AAT-TACAGATCTTATCTCCCTAAGT-TGTAGTAGAGCAGATC
64 TCAGCAGTAGAATAGGTTGAAGAATGTA-AG-TCCTATCTCCCT-AGTCAGCAGTAGAGCAGATC
12338717 GAAGA
126 GAAGA
12338722 CGGCGATTCT
Statistics
Matches: 108, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
130 2 0.02
131 8 0.07
132 95 0.88
133 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (132 bp):
GTGAATCCTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAGACCTATCTCCCTAGTC
AGCAGTAGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTAGTCAGCAGTAGAGCAGATCGAAGA
TT
Found at i:12338809 original size:176 final size:176
Alignment explanation
Indices: 12338600--12339007 Score: 683
Period size: 176 Copynumber: 2.3 Consensus size: 176
12338590 TTGTGAGTCC
12338600 TATCTCCCTG-GTCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAGCAGCAGTA
1 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAGCAGCAGTA
** *
12338664 GAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGTTGTAGTAGAGCAGATCGAAGACGGCGAT
65 GAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAA
12338729 TCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAACCCACTAGCCT
130 TCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAACCCACTAGCCT
*
12338776 TATCTCTCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAGCAGCAGTAG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAGCAGCAGTAG
*
12338841 AGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAAT
66 AGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAAT
* *
12338906 CTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAAGCCACTAGCCT
131 CTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAACCCACTAGCCT
* * * ** *
12338952 TATCTCCCTGTGCAGCAGTGGAGTAGGTTGAAAATTATAGATTTTAACTCCCTAAG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAG
12339008 TTGCAATGGA
Statistics
Matches: 217, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
176 216 1.00
177 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (176 bp):
TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATCTCCCTAAGCAGCAGTAG
AGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAAT
CTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAACCCACTAGCCT
Found at i:12338838 original size:386 final size:386
Alignment explanation
Indices: 12338127--12338838 Score: 1044
Period size: 386 Copynumber: 1.8 Consensus size: 386
12338117 GGAGAATCCC
* *
12338127 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTTAGTAGTGGA
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGGA
12338192 ATAGGTTAAAGATTATGAATCCTATCTCCCTGAGAAACAGTGGAGTAGGTTGAAGATTATGAATC
66 ATAGGTTAAAGATTATGAATCCTATCTCCCTGAGAAACAGTGGAGTAGGTTGAAGATTATGAATC
* * *
12338257 CTATCTCCCTGAGAAACAGTGGAGTAGGTTTAAAATTACAGATCTTATCTCCCTAAGCAGTAGTA
131 CTATCTCCCTAAGAAACAGTAGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTA
* * * *
12338322 GAGTAGATCGAAGACGGTGAATTTTATCTTCCCAAGGTAGTAGAGAGGCAGATTTAAGCCACTAG
196 GAGCAGATCGAAGACGGCGAATTTTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAACCCACTAG
* * *
12338387 CCTTATCTCCCTGGTCAGTAGTGGAATAAGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAG
261 CCTTATCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTGTAAGACCTATCTCCCTAGTCAGCAG
12338452 TGGAATACGTGAATCCTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAGTCCT
326 TGGAATACGTGAATCCTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAGTCCT
*
12338513 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAGTGG
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTAGTCAGCAGTGG
* * * * * * *
12338577 AGTAGGTTGAAGATTGTGAGTCCTATCTCCCTG-GTCAGCAGTGGAGTAGGTTGAAGATTGT-AG
65 AATAGGTTAAAGATTATGAATCCTATCTCCCTGAG-AAACAGTGGAGTAGGTTGAAGATTATGA-
* * **
12338640 A-CCTTATCTCCCTAAGCAGCAGTAGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGTTGT
128 ATCC-TATCTCCCTAAGAAACAGTAGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGT
*
12338704 AGTAGAGCAGATCGAAGACGGCG-ATTCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAACCC
192 AGTAGAGCAGATCGAAGACGGCGAATT-TTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAACCC
* * *
12338768 ACTAGCCTTATCTCTCTGAG-CAGCAGTGGAGTAGGTTGAAGATTGT-AGACCTTATCTCCCTAA
256 ACTAGCCTTATCTCCCTG-GTCAGCAGTGGAATAAGTTGAAGATTGTAAGACC-TATCTCCCT-A
12338831 G-CAGCAGT
318 GTCAGCAGT
12338839 AGAGTAGGTT
Statistics
Matches: 290, Mismatches: 28, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
385 13 0.04
386 275 0.95
387 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (386 bp):
ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGGA
ATAGGTTAAAGATTATGAATCCTATCTCCCTGAGAAACAGTGGAGTAGGTTGAAGATTATGAATC
CTATCTCCCTAAGAAACAGTAGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTA
GAGCAGATCGAAGACGGCGAATTTTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAACCCACTAG
CCTTATCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTGTAAGACCTATCTCCCTAGTCAGCAG
TGGAATACGTGAATCCTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAGTCCT
Found at i:12338954 original size:88 final size:88
Alignment explanation
Indices: 12338686--12338974 Score: 248
Period size: 88 Copynumber: 3.3 Consensus size: 88
12338676 AATTACAGAT
** * * *
12338686 CTTATCTCCCTAAGTTGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAG
1 CTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAG
* *
12338751 GGAAGCAGATTTAACCCACTAGC
66 GGAAGTAGATTTAAACCACTAGC
* * * * * ** * * *
12338774 CTTATCTCTCTGAGCAGCAGTGGAGTAGGTTGAAGATTG-TAGACCTTATC-TCCCTAAGCAGCA
1 CTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACGGCGA-ATCTTATCTTCCC-AAG--GTA
* * ** *
12338837 GTA--G-AGTAGGTTGAAAATTAC-AGAT
62 GTAGGGAAGTAGATT-TAAACCACTAG-C
*
12338862 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAG
1 CTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAG
*
12338927 GGAAGTAGATTTAAGCCACTAGC
66 GGAAGTAGATTTAAACCACTAGC
**
12338950 CTTATCTCCCTGTGCAGCAGTGGAG
1 CTTATCTCCCTAAGCAGCAGTGGAG
12338975 TAGGTTGAAA
Statistics
Matches: 147, Mismatches: 42, Indels: 24
0.69 0.20 0.11
Matches are distributed among these distances:
86 5 0.03
87 13 0.09
88 110 0.75
89 14 0.10
90 5 0.03
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (88 bp):
CTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAG
GGAAGTAGATTTAAACCACTAGC
Found at i:12339184 original size:44 final size:45
Alignment explanation
Indices: 12339120--12339214 Score: 122
Period size: 44 Copynumber: 2.1 Consensus size: 45
12339110 ATCGTATCAG
* *
12339120 GTCTTATCTCCCTAAGGTTGCAGCGGA-GCAGACTGA-AAAAGCAA
1 GTCTTATCCCCCTAAAGTTGCAG-GGAGGCAGACTGAGAAAAGCAA
* *
12339164 GTCTTATCCCCCTAAAGTTGCAGTGAGGCAGACTGAGAATAGCAA
1 GTCTTATCCCCCTAAAGTTGCAGGGAGGCAGACTGAGAAAAGCAA
*
12339209 ATCTTA
1 GTCTTA
12339215 CTTCCCTGGC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
43 2 0.05
44 30 0.68
45 12 0.27
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (45 bp):
GTCTTATCCCCCTAAAGTTGCAGGGAGGCAGACTGAGAAAAGCAA
Found at i:12339708 original size:21 final size:19
Alignment explanation
Indices: 12339662--12339736 Score: 132
Period size: 19 Copynumber: 3.8 Consensus size: 19
12339652 AATTTTCAAG
12339662 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
12339681 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
12339700 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
12339721 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
12339737 ATATATGATT
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
19 35 0.65
21 19 0.35
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:12340071 original size:36 final size:36
Alignment explanation
Indices: 12339996--12340071 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
12339986 CATACATACG
*
12339996 TTTTATAATATATACATATACGTACACATTTTTTAAT
1 TTTTATAATATATACATATACG-ACACATTTTATAAT
* *
12340033 TTTTATAA-ATATATATATAC-ACATACTTTTATATAT
1 TTTTATAATATATACATATACGACACA-TTTTATA-AT
12340069 TTT
1 TTT
12340072 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 4 0.12
35 6 0.18
36 16 0.47
37 8 0.24
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.51
Consensus pattern (36 bp):
TTTTATAATATATACATATACGACACATTTTATAAT
Found at i:12340184 original size:25 final size:23
Alignment explanation
Indices: 12340156--12340211 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
12340146 TTTTTTTCTT
12340156 TTTTTATAATTCACATACATATATA
1 TTTTTATAA-T-ACATACATATATA
* * **
12340181 TTTTTCTTATATGTACATATATA
1 TTTTTATAATACATACATATATA
12340204 TTTTTATA
1 TTTTTATA
12340212 TTTTATAATT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 17 0.68
24 1 0.04
25 7 0.28
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (23 bp):
TTTTTATAATACATACATATATA
Found at i:12341732 original size:33 final size:33
Alignment explanation
Indices: 12341689--12341766 Score: 102
Period size: 33 Copynumber: 2.4 Consensus size: 33
12341679 AGCTAATGTG
* *
12341689 CTTGATTTCCAACAATAGATACAATGACAAACT
1 CTTGATTTCCAACAACAAATACAATGACAAACT
* * **
12341722 GTTGATTTCCAACAGCAAATACAATGGTAAACT
1 CTTGATTTCCAACAACAAATACAATGACAAACT
12341755 CTTGATTTCCAA
1 CTTGATTTCCAA
12341767 AAGGAAATAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (33 bp):
CTTGATTTCCAACAACAAATACAATGACAAACT
Found at i:12341775 original size:33 final size:33
Alignment explanation
Indices: 12341689--12341775 Score: 95
Period size: 33 Copynumber: 2.6 Consensus size: 33
12341679 AGCTAATGTG
* *
12341689 CTTGATTTCCAACAA-TAGATACAATGACAAACT
1 CTTGATTTCCAA-AAGCAAATACAATGACAAACT
* * **
12341722 GTTGATTTCCAACAGCAAATACAATGGTAAACT
1 CTTGATTTCCAAAAGCAAATACAATGACAAACT
*
12341755 CTTGATTTCCAAAAGGAAATA
1 CTTGATTTCCAAAAGCAAATA
12341776 AAGGATTTTC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
32 1 0.02
33 43 0.98
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (33 bp):
CTTGATTTCCAAAAGCAAATACAATGACAAACT
Found at i:12344183 original size:18 final size:18
Alignment explanation
Indices: 12344147--12344200 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
12344137 ATATATTCTT
*
12344147 AAGAAAAGAAAAACGAAA
1 AAGAAAAGAAAAACAAAA
*
12344165 AAGAAAAGAAAAATAAAAA
1 AAGAAAAGAAAAA-CAAAA
*
12344184 AAGAGAAGGAAAAACAA
1 AAGA-AAAGAAAAACAA
12344201 GTAAAAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 13 0.43
19 9 0.30
20 8 0.27
ACGTcount: A:0.78, C:0.04, G:0.17, T:0.02
Consensus pattern (18 bp):
AAGAAAAGAAAAACAAAA
Found at i:12346227 original size:45 final size:44
Alignment explanation
Indices: 12346176--12346268 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 44
12346166 GGTTCGCTGT
* *
12346176 AATGGAATAGAGCTGTAATAGTAATTCAATT-T-TTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-ATTC--TTCTGTTAGGTTGAATGG
*
12346221 AATGGAATAGAACTGTAATGGTATTCTTCTGTTAGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCTTCTGTTAGGTTGAATGG
12346265 AATG
1 AATG
12346269 ATGTTGTAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
42 2 0.05
43 1 0.02
44 20 0.47
45 20 0.47
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCTTCTGTTAGGTTGAATGG
Found at i:12346580 original size:17 final size:17
Alignment explanation
Indices: 12346558--12346590 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
12346548 TTATTGAATG
12346558 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
*
12346575 TTATTAAATTTTATTT
1 TTATTAAATTATATTT
12346591 AATAAGATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:12353226 original size:50 final size:50
Alignment explanation
Indices: 12353133--12353301 Score: 205
Period size: 50 Copynumber: 3.4 Consensus size: 50
12353123 GCCATATCAA
** * * * *
12353133 ACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCATGCCATGTCCTAG
1 ACATGGTCTTACATGGGACCTT-TCATCTCGGTGCCAACGCCATGTCCCAG
**
12353184 ACATGGTCTTACGGGGGACCTTTCATCTCGGTGCCAACGCCATGTCCCAG
1 ACATGGTCTTACATGGGACCTTTCATCTCGGTGCCAACGCCATGTCCCAG
* * **
12353234 ACAAGGTCTTACATGGGACCTCTT-ATCTTGGTGCCAACAACATGTCCCAG
1 ACATGGTCTTACATGGGACCT-TTCATCTCGGTGCCAACGCCATGTCCCAG
12353284 ACATGGTCTTACATGGGA
1 ACATGGTCTTACATGGGA
12353302 TTTCTTTACC
Statistics
Matches: 102, Mismatches: 15, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
50 82 0.80
51 20 0.20
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (50 bp):
ACATGGTCTTACATGGGACCTTTCATCTCGGTGCCAACGCCATGTCCCAG
Found at i:12354962 original size:15 final size:14
Alignment explanation
Indices: 12354938--12354979 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 14
12354928 TAATCTTTGG
12354938 TTTATTATTTTATT
1 TTTATTATTTTATT
12354952 TTTAGTTA-TTTATT
1 TTTA-TTATTTTATT
12354966 TTTAATTATTTTAT
1 TTT-ATTATTTTAT
12354980 CTGACTTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 16 0.64
15 9 0.36
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (14 bp):
TTTATTATTTTATT
Found at i:12355838 original size:20 final size:20
Alignment explanation
Indices: 12355813--12355852 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
12355803 CATTGAGAAT
12355813 TTGAGTGGCGTGTTCTTTTC
1 TTGAGTGGCGTGTTCTTTTC
12355833 TTGAGTGGCGTGTTCTTTTC
1 TTGAGTGGCGTGTTCTTTTC
12355853 AAGCTTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.05, C:0.15, G:0.30, T:0.50
Consensus pattern (20 bp):
TTGAGTGGCGTGTTCTTTTC
Found at i:12358635 original size:25 final size:25
Alignment explanation
Indices: 12358600--12358647 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
12358590 TCAAATCTGT
12358600 GACTTTGGTAAACTTTACGATCCGC
1 GACTTTGGTAAACTTTACGATCCGC
*
12358625 GACTTTTGTAAACTTTACGATCC
1 GACTTTGGTAAACTTTACGATCC
12358648 ACTTCCGCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (25 bp):
GACTTTGGTAAACTTTACGATCCGC
Found at i:12372890 original size:15 final size:17
Alignment explanation
Indices: 12372872--12372907 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
12372862 TAATAAGTTC
12372872 AAAATTAAAA-AT-AGA
1 AAAATTAAAATATGAGA
12372887 AAAA-TAAAATATGAGA
1 AAAATTAAAATATGAGA
12372903 AAAAT
1 AAAAT
12372908 CATCAACCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
14 5 0.28
15 6 0.33
16 7 0.39
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.19
Consensus pattern (17 bp):
AAAATTAAAATATGAGA
Found at i:12375201 original size:8 final size:8
Alignment explanation
Indices: 12375170--12375232 Score: 56
Period size: 9 Copynumber: 7.2 Consensus size: 8
12375160 AAATTATCAA
12375170 ATAAAAAT
1 ATAAAAAT
12375178 A-AAAAAT
1 ATAAAAAT
12375185 CAATAAAAATT
1 --ATAAAAA-T
12375196 ATAAAAAT
1 ATAAAAAT
*
12375204 ATTAAAATTT
1 A-TAAAA-AT
12375214 AATAAAAAT
1 -ATAAAAAT
12375223 ATAAAAAT
1 ATAAAAAT
12375231 AT
1 AT
12375233 TTAAANNNNN
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
7 6 0.13
8 13 0.28
9 14 0.30
10 11 0.24
11 2 0.04
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.29
Consensus pattern (8 bp):
ATAAAAAT
Found at i:12375203 original size:19 final size:18
Alignment explanation
Indices: 12375169--12375230 Score: 67
Period size: 18 Copynumber: 3.5 Consensus size: 18
12375159 AAAATTATCA
12375169 AATAAAAA-TA-AAAAAT
1 AATAAAAATTATAAAAAT
12375185 CAATAAAAATTATAAAAAT
1 -AATAAAAATTATAAAAAT
* *
12375204 ATTAAAATTTAATAAAAAT
1 AATAAAAATT-ATAAAAAT
12375223 -ATAAAAAT
1 AATAAAAAT
12375231 ATTTAAANNN
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
17 8 0.21
18 16 0.42
19 14 0.37
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (18 bp):
AATAAAAATTATAAAAAT
Found at i:12375210 original size:27 final size:27
Alignment explanation
Indices: 12375170--12375233 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 27
12375160 AAATTATCAA
*
12375170 ATAAAAATA--AAAAATCAATAAAAATT
1 ATAAAAATATTAAAATTCAATAAAAA-T
*
12375196 ATAAAAATATTAAAATTTAATAAAAAT
1 ATAAAAATATTAAAATTCAATAAAAAT
12375223 ATAAAAATATT
1 ATAAAAATATT
12375234 TAAANNNNNN
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 9 0.26
27 12 0.35
28 13 0.38
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.30
Consensus pattern (27 bp):
ATAAAAATATTAAAATTCAATAAAAAT
Found at i:12375472 original size:29 final size:28
Alignment explanation
Indices: 12375440--12375496 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
12375430 TTTTTAATGA
* * *
12375440 AAAATTAAATATTTCTTATATTTTTTATT
1 AAAATTAAATAATT-TAATAATTTTTATT
*
12375469 AAAATTTAATAATTTAATAATTTTTATT
1 AAAATTAAATAATTTAATAATTTTTATT
12375497 GATTTTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (28 bp):
AAAATTAAATAATTTAATAATTTTTATT
Found at i:12376931 original size:22 final size:23
Alignment explanation
Indices: 12376877--12376931 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
12376867 GAAGATATTC
12376877 AATCTTA-AGATATGATATGTAT
1 AATCTTAGAGATATGATATGTAT
*
12376899 --TCTTAGAAGATATGAT-TTTAT
1 AATCTTAG-AGATATGATATGTAT
12376920 AATCTTAGAGAT
1 AATCTTAGAGAT
12376932 TTAATTTGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
20 5 0.18
21 4 0.14
22 13 0.46
23 6 0.21
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (23 bp):
AATCTTAGAGATATGATATGTAT
Found at i:12386721 original size:88 final size:88
Alignment explanation
Indices: 12386558--12386744 Score: 241
Period size: 88 Copynumber: 2.1 Consensus size: 88
12386548 AACAGATTAG
* * * * *
12386558 TGAAGATAGTAGATCTTGCCTTCCTACACCGACAGTGAAGCAGATTGAAGACACCAGCCTTGCCT
1 TGAAAATAGCAGATCTTGCCTTCCTACACCGACAGTGAAGCAAATCGAAGAAACCAGCCTTGCCT
* ** *
12386623 CCCTCGGTTGCAGTGGAGTAGGT
66 ACCTCGGTTGCAGCAGAGCAGGT
* * *
12386646 TGAAAATAGCAGATCTTGCCTTCCTGCACCGATAGTGAAGCAAATCGAAGAAACCAGCCTTGCTT
1 TGAAAATAGCAGATCTTGCCTTCCTACACCGACAGTGAAGCAAATCGAAGAAACCAGCCTTGCCT
*
12386711 ATCT-GTGTTGCAGCAGAGCAGGT
66 ACCTCG-GTTGCAGCAGAGCAGGT
12386734 TGAAAATAGCA
1 TGAAAATAGCA
12386745 AATCGAAGAC
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
87 1 0.01
88 84 0.99
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (88 bp):
TGAAAATAGCAGATCTTGCCTTCCTACACCGACAGTGAAGCAAATCGAAGAAACCAGCCTTGCCT
ACCTCGGTTGCAGCAGAGCAGGT
Found at i:12386778 original size:57 final size:57
Alignment explanation
Indices: 12386684--12386799 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 57
12386674 CCGATAGTGA
* * * * *
12386684 AGCAAATCGAAGAAACCAGCCTTGCTTATCTGTGTTGCAGCAGAGCAGGTTGAAAAT
1 AGCAAATCGAAGAAACCAGCCTTACCTACCCGGGTTGCAGCAGAGCAGGTTGAAAAT
* * * * *
12386741 AGCAAATCGAAGACACCAGCCTTACCTCCCCGGGTTGCAGCGGAGTAGGTTGAAGAT
1 AGCAAATCGAAGAAACCAGCCTTACCTACCCGGGTTGCAGCAGAGCAGGTTGAAAAT
12386798 AG
1 AG
12386800 TGGATCTTGC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (57 bp):
AGCAAATCGAAGAAACCAGCCTTACCTACCCGGGTTGCAGCAGAGCAGGTTGAAAAT
Found at i:12386875 original size:145 final size:145
Alignment explanation
Indices: 12386604--12386882 Score: 362
Period size: 145 Copynumber: 1.9 Consensus size: 145
12386594 GAAGCAGATT
* *
12386604 GAAGACACCAGCCTTGCCTCCCTCGGTTGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGCCTTC
1 GAAGACACCAGCCTTACCTCCCTCGGTTGCAGCGGAGTAGGTTGAAAATAGCAGATCTTGCCTTC
* * * * * * * *
12386669 CTGCACCGATAGTGAAGCAAATCGAAGAAACCAGCCTTGCTTATCTGTGTTGCAGCAGAGCAGGT
66 CTGCACCAACAGCGAAGCAAATCGAAGAAACCAGCCTTGCCTACCTGGGTTACAGCAGAGCAGAT
12386734 TGAAAATAGCAAATC
131 TGAAAATAGCAAATC
* **
12386749 GAAGACACCAGCCTTACCTCCC-CGGGTTGCAGCGGAGTAGGTTGAAGATAGTGGATCTTGCCTT
1 GAAGACACCAGCCTTACCTCCCTC-GGTTGCAGCGGAGTAGGTTGAAAATAGCAGATCTTGCCTT
* * * * * **
12386813 CCTGCACCAACAGCGAAGTAGATCGAAGACACTAGCCTTGCCTCCCTGGGTTACAGTGGAGCAGA
65 CCTGCACCAACAGCGAAGCAAATCGAAGAAACCAGCCTTGCCTACCTGGGTTACAGCAGAGCAGA
12386878 TTGAA
130 TTGAA
12386883 GATGGCAGAT
Statistics
Matches: 113, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
144 1 0.01
145 112 0.99
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (145 bp):
GAAGACACCAGCCTTACCTCCCTCGGTTGCAGCGGAGTAGGTTGAAAATAGCAGATCTTGCCTTC
CTGCACCAACAGCGAAGCAAATCGAAGAAACCAGCCTTGCCTACCTGGGTTACAGCAGAGCAGAT
TGAAAATAGCAAATC
Found at i:12386898 original size:88 final size:88
Alignment explanation
Indices: 12386741--12387160 Score: 347
Period size: 88 Copynumber: 4.8 Consensus size: 88
12386731 GGTTGAAAAT
* * * * * * **
12386741 AGCAAATCGAAGACACCAGCCTTACCTCCCCGGGTTGCAGCGGAGTAGGTTGAAGATAGTGGATC
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGATTGAAGATAGCAGATC
*
12386806 TTGCCTTCCTGCACCAACAGCGA
66 TTGCCTTCCTGCACTAACAGCGA
* * * * *
12386829 AGTAGATCGAAGACACTAGCCTTGCCTCCCTGGGTTACAGTGGAGCAGATTGAAGATGGCAGATA
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGATTGAAGATAGCAGATC
* *
12386894 TTGCCTTCCTGTACTGACAGCGA
66 TTGCCTTCCTGCACTAACAGCGA
* * * *** * * *
12386917 AGCAAATCGAAGACACCAGTCTTGCCTTCCTCAACTGACAACGGAGCAGACTGAAGATAGCAGAT
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCT-GGGTTACAGCGGAGCAGATTGAAGATAGCAGAT
* * * *
12386982 CTTGCTTTCCTACACTAATAGTGA
65 CTTGCCTTCCTGCACTAACAGCGA
* * * * ** * * *
12387006 AGCAGATTGAAGACACTAGCCTTGCCTCCATGGGTTGCAGCGGAATAGGTTAAAGATAGTAGATC
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGATTGAAGATAGCAGATC
* ** * *
12387071 TTGCATTCCTATACTGACAGTGA
66 TTGCCTTCCTGCACTAACAGCGA
* * * * * * * * *
12387094 AGCAGATTGAAGACACTAGCCTGGCCTTCCTGGATTGCAGCAGAGCAGGTTGAAAATTA-CAGAT
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGATTGAAGA-TAGCAGAT
12387158 CTT
65 CTT
12387161 ATCTCCCTAA
Statistics
Matches: 262, Mismatches: 68, Indels: 4
0.78 0.20 0.01
Matches are distributed among these distances:
88 193 0.74
89 69 0.26
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.23
Consensus pattern (88 bp):
AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGATTGAAGATAGCAGATC
TTGCCTTCCTGCACTAACAGCGA
Found at i:12386973 original size:44 final size:45
Alignment explanation
Indices: 12386888--12386992 Score: 106
Period size: 44 Copynumber: 2.4 Consensus size: 45
12386878 TTGAAGATGG
* ** *
12386888 CAGATATTGCCTTCCTGTACTGACAGCGAAGCAAATCGAAGACAC
1 CAGATCTTGCCTTCCTCAACTGACAACGAAGCAAATCGAAGACAC
* * * *
12386933 CAG-TCTTGCCTTCCTCAACTGACAACGGAGCAGA-CTGAAGATAG
1 CAGATCTTGCCTTCCTCAACTGACAACGAAGCAAATC-GAAGACAC
*
12386977 CAGATCTTGCTTTCCT
1 CAGATCTTGCCTTCCT
12386993 ACACTAATAG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
43 1 0.02
44 34 0.69
45 14 0.29
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (45 bp):
CAGATCTTGCCTTCCTCAACTGACAACGAAGCAAATCGAAGACAC
Found at i:12387008 original size:89 final size:89
Alignment explanation
Indices: 12386791--12387032 Score: 225
Period size: 89 Copynumber: 2.7 Consensus size: 89
12386781 CGGAGTAGGT
** * * * * * *
12386791 TGAAGATAGTGGATCTTGCCTTCCTGCACCAACAGCGAAGTAGATCGAAGACACTAGCCTTGCCT
1 TGAAGATAGCAGATATTGCCTTCCTACACTAACAGCGAAGCAAATCGAAGACACCAGCCTTGCCT
* *** * ** *
12386856 CCCT-GGGTTACAGTGGAGCAGAT
66 TCCTCAACTGACAACGGAGCAGAC
* ** * *
12386879 TGAAGATGGCAGATATTGCCTTCCTGTACTGACAGCGAAGCAAATCGAAGACACCAGTCTTGCCT
1 TGAAGATAGCAGATATTGCCTTCCTACACTAACAGCGAAGCAAATCGAAGACACCAGCCTTGCCT
12386944 TCCTCAACTGACAACGGAGCAGAC
66 TCCTCAACTGACAACGGAGCAGAC
* * * * * * *
12386968 TGAAGATAGCAGATCTTGCTTTCCTACACTAATAGTGAAGCAGATTGAAGACACTAGCCTTGCCT
1 TGAAGATAGCAGATATTGCCTTCCTACACTAACAGCGAAGCAAATCGAAGACACCAGCCTTGCCT
12387033 CCATGGGTTG
Statistics
Matches: 122, Mismatches: 31, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
88 57 0.47
89 65 0.53
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (89 bp):
TGAAGATAGCAGATATTGCCTTCCTACACTAACAGCGAAGCAAATCGAAGACACCAGCCTTGCCT
TCCTCAACTGACAACGGAGCAGAC
Found at i:12387088 original size:177 final size:177
Alignment explanation
Indices: 12386791--12387124 Score: 425
Period size: 177 Copynumber: 1.9 Consensus size: 177
12386781 CGGAGTAGGT
** * *
12386791 TGAAGATAGTGGATCTTGCCTTCCTGCACCAACAGCGAAGTAGATCGAAGACACTAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTACACCAACAGCGAAGCAGATCGAAGACACTAGCCTTGCCT
* * * * * * *
12386856 CCCTGGGTTACAGTGGAGCAGATTGAAGATGGCAGATATTGCCTTCCTGTACTGACAGCGAAGCA
66 CCATGGGTTACAGCGGAACAGATTAAAGATAGCAGATATTGCATTCCTATACTGACAGCGAAGCA
* *
12386921 AATCGAAGACACCAGTCTTGCCTTCCTCAACTGACAACGGAGCAGAC
131 AATCGAAGACACCAGCCTGGCCTTCCTCAACTGACAACGGAGCAGAC
* * * * *
12386968 TGAAGATAGCAGATCTTGCTTTCCTACACTAATAGTGAAGCAGATTGAAGACACTAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTACACCAACAGCGAAGCAGATCGAAGACACTAGCCTTGCCT
* * * * * *
12387033 CCATGGGTTGCAGCGGAATAGGTTAAAGATAGTAGATCTTGCATTCCTATACTGACAGTGAAGCA
66 CCATGGGTTACAGCGGAACAGATTAAAGATAGCAGATATTGCATTCCTATACTGACAGCGAAGCA
* * *
12387098 GATTGAAGACACTAGCCTGGCCTTCCT
131 AATCGAAGACACCAGCCTGGCCTTCCT
12387125 GGATTGCAGC
Statistics
Matches: 130, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
177 130 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (177 bp):
TGAAGATAGCAGATCTTGCCTTCCTACACCAACAGCGAAGCAGATCGAAGACACTAGCCTTGCCT
CCATGGGTTACAGCGGAACAGATTAAAGATAGCAGATATTGCATTCCTATACTGACAGCGAAGCA
AATCGAAGACACCAGCCTGGCCTTCCTCAACTGACAACGGAGCAGAC
Found at i:12387326 original size:131 final size:131
Alignment explanation
Indices: 12387140--12387519 Score: 591
Period size: 131 Copynumber: 2.9 Consensus size: 131
12387130 GCAGCAGAGC
* * *
12387140 AGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGGCGAATCTT
1 AGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTT
*
12387205 ATCTTCCTCAGGAGTAGGGAAGCAGATTTAAGCCACTAGTCCTATCTCCCTGGTCAGCAGTGAAA
66 ATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCACTAGTCCTATCTCCCTGGTCAGCAGTGAAA
12387270 T
131 T
*
12387271 AGGTTGGAAATTACAGATCTTATCTCCCTCAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTT
1 AGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTT
* *
12387336 ATCTTCCCCAGGAGTAGGAAAGCAGATTTAAGCCACTAGTCCTATCTCCCTGGTCAGCAGTGGAA
66 ATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCACTAGTCCTATCTCCCTGGTCAGCAGTGAAA
12387401 T
131 T
** * * *
12387402 AGGTT-GAAGATTATGGATTTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACGAATCT
1 AGGTTGGAA-ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCT
* * * *
12387466 TATCTTCCCCAGGTAGTAAGGAAACAGATTTAAGCCACTAATCCTATTTCCCTG
65 TATCTTCCCCAGG-AGTAGGGAAGCAGATTTAAGCCACTAGTCCTATCTCCCTG
12387520 AAGTTGCAGT
Statistics
Matches: 229, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
130 3 0.01
131 191 0.83
132 35 0.15
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (131 bp):
AGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTT
ATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCACTAGTCCTATCTCCCTGGTCAGCAGTGAAA
T
Found at i:12387469 original size:44 final size:44
Alignment explanation
Indices: 12387156--12387470 Score: 117
Period size: 44 Copynumber: 7.2 Consensus size: 44
12387146 AAAATTACAG
* * * *
12387156 ATCTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGGCGA
1 ATCTTATCTCCCTCAGCAGTAGTGGAGCAGATCGAAGACGACGA
* * ** * *
12387200 ATCTTATCTTCCTCAGGAGTAG-GGAAGCAGATTTAAG-CCACTA
1 ATCTTATCTCCCTCAGCAGTAGTGG-AGCAGATCGAAGACGACGA
* * * * * ** * * **
12387243 GTCCTATCTCCCT-GGTCAGCAGTGAAATAGGTTGGAA-ATTAC-A
1 ATCTTATCTCCCTCAG-CAGTAGTGGAGCA-GATCGAAGACGACGA
*
12387286 GATCTTATCTCCCTCAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCTCAGCAGTAGTGGAGCAGATCGAAGACGACGA
* * ** * *
12387331 ATCTTATCTTCCC-CAGGAGTAG-GAAAGCAGATTTAAG-CCACTA
1 ATCTTATC-TCCCTCAGCAGTAGTG-GAGCAGATCGAAGACGACGA
* * * * ** * * ** * *
12387374 GTCCTATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTATGG
1 ATCTTATCTCCCTCAG-CAGTAGTGGAGCAGATCGAAGACGACGA
* * *
12387418 ATTTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACGA
1 ATCTTATCTCCCTCAGCAGTAGTGGAGCAGATCGAAGACGACGA
12387462 ATCTTATCT
1 ATCTTATCT
12387471 TCCCCAGGTA
Statistics
Matches: 184, Mismatches: 71, Indels: 32
0.64 0.25 0.11
Matches are distributed among these distances:
42 6 0.03
43 48 0.26
44 123 0.67
45 7 0.04
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTCAGCAGTAGTGGAGCAGATCGAAGACGACGA
Found at i:12389444 original size:29 final size:28
Alignment explanation
Indices: 12389385--12389462 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
12389375 CTCTTTCCAA
12389385 TATTTTAACATTTTAATTTATCTCAACT
1 TATTTTAACATTTTAATTTATCTCAACT
* *
12389413 TATTTCAACATTGTTAATTTAT-TCAAATT
1 TATTTTAACATT-TTAATTTATCTC-AACT
*
12389442 TATTTTAACCTTTTAATTTAT
1 TATTTTAACATTTTAATTTAT
12389463 ACATATTATA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
28 22 0.50
29 22 0.50
ACGTcount: A:0.32, C:0.12, G:0.01, T:0.55
Consensus pattern (28 bp):
TATTTTAACATTTTAATTTATCTCAACT
Found at i:12391013 original size:19 final size:19
Alignment explanation
Indices: 12390989--12391026 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
12390979 AACCTAAGGG
12390989 TAAAATAGTAAA-TAAATAA
1 TAAAAT-GTAAATTAAATAA
12391008 TAAAATGTAAATTAAATAA
1 TAAAATGTAAATTAAATAA
12391027 AACTTTAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
TAAAATGTAAATTAAATAA
Found at i:12392934 original size:75 final size:74
Alignment explanation
Indices: 12392801--12392939 Score: 190
Period size: 75 Copynumber: 1.9 Consensus size: 74
12392791 TACAAGTTGA
* * * * **
12392801 AAAAATTTGAATCAATATTTTAAAGAATTACAGAGTGATAAATTTAGAAATCTTTTTTAAAAAAA
1 AAAAATTTGAATCAATAGTTTAAAAAATTACAAAGTGATAAATTTAGAAAACGATTTTAAAAAAA
12392866 TGACAACTG
66 TGACAACTG
*
12392875 AAAAATTTCGAATCAATAGTTTAAAAAATTACAAAGTGATACATTCT-GAAAACGATTTTAAAAA
1 AAAAATTT-GAATCAATAGTTTAAAAAATTACAAAGTGATAAATT-TAGAAAACGATTTTAAAAA
12392939 A
64 A
12392940 TTTACAAACT
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
74 8 0.14
75 47 0.84
76 1 0.02
ACGTcount: A:0.50, C:0.08, G:0.10, T:0.32
Consensus pattern (74 bp):
AAAAATTTGAATCAATAGTTTAAAAAATTACAAAGTGATAAATTTAGAAAACGATTTTAAAAAAA
TGACAACTG
Found at i:12395142 original size:53 final size:53
Alignment explanation
Indices: 12395084--12395227 Score: 139
Period size: 53 Copynumber: 2.7 Consensus size: 53
12395074 TTGAACTAAT
*
12395084 AAAAAGGGTGTCGGTCATCAATGTCTTAGCACCCCAATTTTTTTTTTAATT-TGG
1 AAAAAGGGTGTCGGTCATCAATGTCTCAGCACCCCAA--TTTTTTTTAATTCTGG
* * * * * *
12395138 AAAAGGGGTGTCAGTTATCAGTGT-TCCAACACCCTAATTTTTTTTAATTCTGG
1 AAAAAGGGTGTCGGTCATCAATGTCT-CAGCACCCCAATTTTTTTTAATTCTGG
** * * *
12395191 AAAAAAAGTGTCGGCCATCACTGTCCCAGCACCCCAA
1 AAAAAGGGTGTCGGTCATCAATGTCTCAGCACCCCAA
12395228 AAAAATTAAT
Statistics
Matches: 70, Mismatches: 17, Indels: 7
0.74 0.18 0.07
Matches are distributed among these distances:
52 12 0.17
53 30 0.43
54 28 0.40
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (53 bp):
AAAAAGGGTGTCGGTCATCAATGTCTCAGCACCCCAATTTTTTTTAATTCTGG
Found at i:12395365 original size:56 final size:57
Alignment explanation
Indices: 12395256--12395377 Score: 174
Period size: 56 Copynumber: 2.1 Consensus size: 57
12395246 AATGTGACAG
* **
12395256 CCATCAGTGTCCCAGCACCCCAAAAAAACCTTTTTTTAATCAGATAAAGGGGTGCCGA
1 CCATCAGTGTCCCAACACCCCAAAAAAA-CAATTTTTAATCAGATAAAGGGGTGCCGA
* * *
12395314 CCATTAGTGTCCCAACACCCCAAAAAAA-AATTTTTAATCAGATAAGGGGGTGTCGA
1 CCATCAGTGTCCCAACACCCCAAAAAAACAATTTTTAATCAGATAAAGGGGTGCCGA
12395370 CCATCAGT
1 CCATCAGT
12395378 ATCATAACAC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
56 31 0.54
58 26 0.46
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (57 bp):
CCATCAGTGTCCCAACACCCCAAAAAAACAATTTTTAATCAGATAAAGGGGTGCCGA
Found at i:12396001 original size:26 final size:26
Alignment explanation
Indices: 12395978--12396027 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12395968 AGTGACTGGT
12395978 TTGACTAACTAATTCTATTAACTGAC
1 TTGACTAACTAATTCTATTAACTGAC
* *
12396004 TTGATTAACTGATTCTATTAACTG
1 TTGACTAACTAATTCTATTAACTG
12396028 TTTATTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (26 bp):
TTGACTAACTAATTCTATTAACTGAC
Found at i:12396023 original size:13 final size:13
Alignment explanation
Indices: 12395983--12396027 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
12395973 CTGGTTTGAC
*
12395983 TAACTAATTCTAT
1 TAACTGATTCTAT
*
12395996 TAACTGACTT-GAT
1 TAACTGA-TTCTAT
12396009 TAACTGATTCTAT
1 TAACTGATTCTAT
12396022 TAACTG
1 TAACTG
12396028 TTTATTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 2 0.07
13 23 0.85
14 2 0.07
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (13 bp):
TAACTGATTCTAT
Found at i:12399379 original size:63 final size:63
Alignment explanation
Indices: 12399280--12399422 Score: 189
Period size: 63 Copynumber: 2.3 Consensus size: 63
12399270 TAGTGTGGCT
* ** * * * *
12399280 CAAAATAGTGAGTTACATGGTCTGGACACACGCCTGTGTCTCTAG-CTCGTGTGTCCCTAATTC
1 CAAAATAGTGAGTTACACGACCTGCACACACGCCTGTGCCTCTAGCCT-ATATGTCCCTAATTC
* *
12399343 CAAAATAGTGAGTTACACGACCTGCACAGACGCCTGTGCCTCTAGCCTATATGTCTCTAATTC
1 CAAAATAGTGAGTTACACGACCTGCACACACGCCTGTGCCTCTAGCCTATATGTCCCTAATTC
12399406 CAAAATAGTGAGTTACA
1 CAAAATAGTGAGTTACA
12399423 TGGCTTACCA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
63 68 0.97
64 2 0.03
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (63 bp):
CAAAATAGTGAGTTACACGACCTGCACACACGCCTGTGCCTCTAGCCTATATGTCCCTAATTC
Found at i:12400013 original size:20 final size:20
Alignment explanation
Indices: 12399968--12400014 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
12399958 CACGAGGGAG
12399968 GGAAAATAAGGAAGAAAGAA
1 GGAAAATAAGGAAGAAAGAA
**
12399988 AAAAAATAA-GAAGAAGAGAA
1 GGAAAATAAGGAAGAA-AGAA
12400008 GGAAAAT
1 GGAAAAT
12400015 GTTTCCTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.68, C:0.00, G:0.26, T:0.06
Consensus pattern (20 bp):
GGAAAATAAGGAAGAAAGAA
Done.