Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 43 of 79
Found at i:14211235 original size:2 final size:2
Alignment explanation
Indices: 14211230--14211258 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14211220 TCAAGGGTTT
14211230 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14211259 GCAGGAAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14213186 original size:19 final size:19
Alignment explanation
Indices: 14213164--14213205 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
14213154 CAAAATTTGG
14213164 AATAAATAAATAATAAA-AT
1 AATAAA-AAATAATAAATAT
*
14213183 AATAAAAACTAATAAATAT
1 AATAAAAAATAATAAATAT
14213202 AATA
1 AATA
14213206 TTGTGCTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (19 bp):
AATAAAAAATAATAAATAT
Found at i:14214834 original size:163 final size:165
Alignment explanation
Indices: 14214646--14214973 Score: 642
Period size: 163 Copynumber: 2.0 Consensus size: 165
14214636 ATTCAATTTT
14214646 ATATAATTAATATAAAATATAATTATTCAAATTATTGTATATAATTAAAATATATTAACTATTTT
1 ATATAATTAATATAAAATATAATTATTCAAATTATTGTATATAATTAAAATATATTAACTATTTT
14214711 GATAATTAAAATATTAAAAAATAAAAAACCTTCAAAATATAATTAAAATTTGAATAAAAATAATA
66 GATAATTAAAATATTAAAAAATAAAAAACCTTCAAAATATAATTAAAATTTGAATAAAAATAATA
14214776 AAGGAATTTAAAGAATTCTTACAAATAAAACCTAA
131 AAGGAATTTAAAGAATTCTTACAAATAAAACCTAA
14214811 ATATAATT-A-ATAAAATATAATTATTCAAATTATTGTATATAATTAAAATATATTAACTATTTT
1 ATATAATTAATATAAAATATAATTATTCAAATTATTGTATATAATTAAAATATATTAACTATTTT
14214874 GATAATTAAAATATTAAAAAATAAAAAACCTTCAAAATATAATTAAAATTTGAATAAAAATAATA
66 GATAATTAAAATATTAAAAAATAAAAAACCTTCAAAATATAATTAAAATTTGAATAAAAATAATA
14214939 AAGGAATTTAAAGAATTCTTACAAATAAAACCTAA
131 AAGGAATTTAAAGAATTCTTACAAATAAAACCTAA
14214974 GTAGAGTTGT
Statistics
Matches: 163, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
163 154 0.94
164 1 0.01
165 8 0.05
ACGTcount: A:0.56, C:0.05, G:0.04, T:0.35
Consensus pattern (165 bp):
ATATAATTAATATAAAATATAATTATTCAAATTATTGTATATAATTAAAATATATTAACTATTTT
GATAATTAAAATATTAAAAAATAAAAAACCTTCAAAATATAATTAAAATTTGAATAAAAATAATA
AAGGAATTTAAAGAATTCTTACAAATAAAACCTAA
Found at i:14215484 original size:19 final size:19
Alignment explanation
Indices: 14215458--14215510 Score: 51
Period size: 19 Copynumber: 2.8 Consensus size: 19
14215448 AACCTAAAAG
14215458 AAAT-CTAAAATT-ATTCTTA
1 AAATCCTAAAATTAATTC--A
14215477 AAA-CCT-AAATTAATTCA
1 AAATCCTAAAATTAATTCA
14215494 AAATCCTAAAATCTAAT
1 AAATCCTAAAAT-TAAT
14215511 ATCTAACTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
17 4 0.14
18 8 0.28
19 13 0.45
20 4 0.14
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATCCTAAAATTAATTCA
Found at i:14226364 original size:88 final size:88
Alignment explanation
Indices: 14226248--14227001 Score: 1118
Period size: 88 Copynumber: 8.6 Consensus size: 88
14226238 GGACCATTGG
* *
14226248 CTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGACCTACTATCTTCAACCTGCTCCACTACA
1 CTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
*
14226313 ACTGAGGGAGGCAAGGCTTGTGT
66 ACCGAGGGAGGCAAGGCTTGTGT
* * * ** *
14226336 CTTTGATTTACTTCGTTGTCGATGCAGGAAGGTAAGATCTGCTATCTTCAACCTGCTCCACTACA
1 CTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
14226401 ACCGAGGGAGGCAAGGCTTGTGT
66 ACCGAGGGAGGCAAGGCTTGTGT
* * *
14226424 CTTCAATCTGCTTCACTGTCGATGTAGGAAGGCAAGATCTGCTATCTTCAACTTGCTCCACTACA
1 CTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
**
14226489 ATTGAGGGAGGCAAGGCTTGTGT
66 ACCGAGGGAGGCAAGGCTTGTGT
* *
14226512 CTTCAATCTGCTTCATTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
1 CTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
14226577 ACCGAGGGAGGCAAGGCTTGTGT
66 ACCGAGGGAGGCAAGGCTTGTGT
* * * *
14226600 CTTCGATCTGTTTCACTGTCGATGTAGGAAGGCAAGATATGCTATCTTCAACCTACTCCACTACA
1 CTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
*
14226665 ACCGATGGAGGCAAGGCTTGTGT
66 ACCGAGGGAGGCAAGGCTTGTGT
* * *
14226688 CTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTACTATCTTCAACTTGCTCCACTATA
1 CTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
*
14226753 ATCGAGGGAGGCAAGGCTTGTGT
66 ACCGAGGGAGGCAAGGCTTGTGT
** * * * * *
14226776 CTTTAATCTGCTTCGCCGCCGATGTAGGAAGGCAAGATCTGCTATCTTCAACCTGCTTCACTACA
1 CTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
* *
14226841 ACTGAGGGAGGCAAGACTTGTGT
66 ACCGAGGGAGGCAAGGCTTGTGT
* *
14226864 CTTCGATCTGCTTCACTGTC-AGTACAGGAAGACAAGATCTGCTATCTTCAACCTGCTCCACTAC
1 CTTCGATCTGCTTCACTGTCGA-TGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTAC
*
14226928 AACCGAGGGAGGCAAGGCTTATGT
65 AACCGAGGGAGGCAAGGCTTGTGT
*
14226952 CTTTGATCTGCTTCACTGTCAGTAT--AGGAAGGCAAGATCTGCTATCTTCA
1 CTTCGATCTGCTTCACTGTC-G-ATGCAGGAAGGCAAGATCTGCTATCTTCA
14227002 CTGATCTGTT
Statistics
Matches: 594, Mismatches: 68, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
87 1 0.00
88 591 0.99
90 1 0.00
91 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (88 bp):
CTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACA
ACCGAGGGAGGCAAGGCTTGTGT
Found at i:14228316 original size:51 final size:50
Alignment explanation
Indices: 14228260--14228359 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 50
14228250 CTTTCGTTTA
* *
14228260 TTTTTTTT-GGACTCAAAGCACCCTTTGCGGGTTTTCACTTTGGTTCCCTT
1 TTTTTTTTAGGAATCAAAGCACCCTTTGCGGGTTTTCACCTTGG-TCCCTT
* *
14228310 TTTTTTTTAGGAATCAAGGCGCCCTTTGCGGGTTTTCACCTTGGTCCCTT
1 TTTTTTTTAGGAATCAAAGCACCCTTTGCGGGTTTTCACCTTGGTCCCTT
14228360 CTCCTTCTTC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 14 0.31
51 31 0.69
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.44
Consensus pattern (50 bp):
TTTTTTTTAGGAATCAAAGCACCCTTTGCGGGTTTTCACCTTGGTCCCTT
Found at i:14234577 original size:22 final size:22
Alignment explanation
Indices: 14234552--14234596 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
14234542 TGAGCAAATG
14234552 TTCTTTCATTCTTTACGATTTT
1 TTCTTTCATTCTTTACGATTTT
**
14234574 TTCTTTCATTCTTTTGGATTTT
1 TTCTTTCATTCTTTACGATTTT
14234596 T
1 T
14234597 CTGCCAAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.11, C:0.16, G:0.07, T:0.67
Consensus pattern (22 bp):
TTCTTTCATTCTTTACGATTTT
Found at i:14235643 original size:14 final size:14
Alignment explanation
Indices: 14235617--14235658 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
14235607 AGAAGTGATG
*
14235617 TGAAAAATGAAAAGA
1 TGAAAAAT-AAAAAA
14235632 T-AAAAATAAAAAA
1 TGAAAAATAAAAAA
14235645 TGAAAAAGTAAAAA
1 TGAAAAA-TAAAAA
14235659 TGGAGAGGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 6 0.25
14 11 0.46
15 7 0.29
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.14
Consensus pattern (14 bp):
TGAAAAATAAAAAA
Found at i:14235645 original size:21 final size:21
Alignment explanation
Indices: 14235619--14235659 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14235609 AAGTGATGTG
14235619 AAAAATG-AAAAGATAAAAATA
1 AAAAATGAAAAAG-TAAAAATA
14235640 AAAAATGAAAAAGTAAAAAT
1 AAAAATGAAAAAGTAAAAAT
14235660 GGAGAGGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAAATGAAAAAGTAAAAATA
Found at i:14245173 original size:34 final size:34
Alignment explanation
Indices: 14245135--14245204 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
14245125 TGGGTCTTCA
14245135 TAATTCGCCACTCCTTCGACACAGTAATAAAAAC
1 TAATTCGCCACTCCTTCGACACAGTAATAAAAAC
*
14245169 TAATTCGCCACTCCTTTGACACAGTAATAAAAAC
1 TAATTCGCCACTCCTTCGACACAGTAATAAAAAC
14245203 TA
1 TA
14245205 GGGGAATAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.27, G:0.09, T:0.26
Consensus pattern (34 bp):
TAATTCGCCACTCCTTCGACACAGTAATAAAAAC
Found at i:14256675 original size:22 final size:22
Alignment explanation
Indices: 14256644--14256685 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
14256634 TACACCAAAA
*
14256644 TAGGCTTTTAGCGGCGCTTTTT
1 TAGGCCTTTAGCGGCGCTTTTT
14256666 TAGGCCTTTAGCGGCGCTTT
1 TAGGCCTTTAGCGGCGCTTT
14256686 GAGAAGCGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.10, C:0.21, G:0.29, T:0.40
Consensus pattern (22 bp):
TAGGCCTTTAGCGGCGCTTTTT
Found at i:14256776 original size:43 final size:43
Alignment explanation
Indices: 14256749--14256890 Score: 225
Period size: 43 Copynumber: 3.3 Consensus size: 43
14256739 TTTTTAGAAA
*
14256749 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCAGCGCTTTTCCCAC
14256792 AAACGCCGCTAAAGACCAAGACCTTTA--ATGACGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCA-G-CGCTTTTCCCAC
* *
14256835 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTGCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCAGCGCTTTTCCCAC
14256878 AAACGCCGCTAAA
1 AAACGCCGCTAAA
14256891 AACATGATTT
Statistics
Matches: 92, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
42 1 0.01
43 90 0.98
44 1 0.01
ACGTcount: A:0.31, C:0.33, G:0.18, T:0.18
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCAGCGCTTTTCCCAC
Found at i:14257106 original size:18 final size:18
Alignment explanation
Indices: 14257083--14257142 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
14257073 TTAAAACAAG
14257083 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
*** * *
14257101 TTACATAAGAAAATT-G-T
1 TTACAT-TCTATATTAGAA
14257118 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
14257136 TTACATT
1 TTACATT
14257143 AGAATTACAT
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
16 4 0.14
17 7 0.24
18 14 0.48
19 4 0.14
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (18 bp):
TTACATTCTATATTAGAA
Found at i:14261029 original size:41 final size:41
Alignment explanation
Indices: 14260875--14261241 Score: 429
Period size: 40 Copynumber: 9.0 Consensus size: 41
14260865 TGGAGTCCCT
* * *
14260875 AGCATTAGCGGCTC-TTTCTCAAAACGCCGCTAAAGACCTC
1 AGCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGACCCC
* * *
14260915 AGCATTAGCGGCTC-TTTCTCAAAACGCCGCTAAAGACCTC
1 AGCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGACCCC
* *
14260955 AGCATTAGCGGCTC-TTTCTCAAAACGCCGCTAAAGACCCC
1 AGCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGACCCC
* *
14260995 AGCATTAGCGGCGGTTTTCTAAAAACGCCACTAAAGACCCC
1 AGCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGACCCC
* * * * *
14261036 AGAATTAGC-GCTGCTTTTCCAAAAACGCTGCTAATGACCTC
1 AGCATTAGCGGC-GCTTTTCTAAAAACGCCGCTAAAGACCCC
*
14261077 AGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGA-CCC
1 AGCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGACCCC
* * * *
14261117 AGCATTAGCGGTGATTTTCCAAAAATGCCGCTAAAGACCCC
1 AGCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGACCCC
** * *
14261158 AAAATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAAACCCCC
1 AGCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGA-CCCC
* * * *
14261200 AGCATTAGCAGCGCTTTTTTAAAAACGCCGTTAAAGCCCCC
1 AGCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGACCCC
14261241 A
1 A
14261242 AAGGAAAGAA
Statistics
Matches: 289, Mismatches: 33, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
40 129 0.45
41 125 0.43
42 35 0.12
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (41 bp):
AGCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGACCCC
Found at i:14261100 original size:122 final size:120
Alignment explanation
Indices: 14260875--14261241 Score: 438
Period size: 122 Copynumber: 3.0 Consensus size: 120
14260865 TGGAGTCCCT
* * *
14260875 AGCATTAGCGGC-TCTTTCTCAAAACGCCGCTAAAGACCTCAGCATTAGCG-GCTCTTTCTC-AA
1 AGCATTAGCGGCGT-TTTCTAAAAACGCCGCTAAAGACCCCAGAATTAGCGCGCT-TTTC-CAAA
*
14260937 AACGCCGCTAAAGACCTCAGCATTAGCGGCTC-TTTCTCAAAACGCCGCTAAAGACCCC
63 AACGCCGCTAAAGACCTCAGCATTAGCGGCGCTTTTC-CAAAACGCCGCTAAAGACCCC
*
14260995 AGCATTAGCGGCGGTTTTCTAAAAACGCCACTAAAGACCCCAGAATTAGCGCTGCTTTTCCAAAA
1 AGCATTAGCGGC-GTTTTCTAAAAACGCCGCTAAAGACCCCAGAATTAGCGC-GCTTTTCCAAAA
* *
14261060 ACGCTGCTAATGACCTCAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGA-CCC
64 ACGCCGCTAAAGACCTCAGCATTAGCGGCGCTTTTCC-AAAACGCCGCTAAAGACCCC
* * * *
14261117 AGCATTAGCGGTGATTTTCCAAAAATGCCGCTAAAGACCCCAAAATTAGCGGCGCTTTTCCAAAA
1 AGCATTAGCGGCG-TTTTCTAAAAACGCCGCTAAAGACCCCAGAATTAGC-GCGCTTTTCCAAAA
* * * ** * *
14261182 ACGCCGCTAAAAACCCCCAGCATTAGCAGCGCTTTTTTAAAAACGCCGTTAAAGCCCCC
64 ACGCCGCTAAAGA-CCTCAGCATTAGCGGCGC-TTTTCCAAAACGCCGCTAAAGACCCC
14261241 A
1 A
14261242 AAGGAAAGAA
Statistics
Matches: 214, Mismatches: 21, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
120 12 0.06
121 34 0.16
122 105 0.49
123 55 0.26
124 8 0.04
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (120 bp):
AGCATTAGCGGCGTTTTCTAAAAACGCCGCTAAAGACCCCAGAATTAGCGCGCTTTTCCAAAAAC
GCCGCTAAAGACCTCAGCATTAGCGGCGCTTTTCCAAAACGCCGCTAAAGACCCC
Found at i:14261168 original size:81 final size:81
Alignment explanation
Indices: 14260895--14261241 Score: 398
Period size: 81 Copynumber: 4.3 Consensus size: 81
14260885 GCTCTTTCTC
* * *
14260895 AAAACGCCGCTAAAGACCTCAGCATTAGCGGCTC-TTTCTC-AAAACGCCGCTAAAGACCTCAGC
1 AAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTTTC-CAAAAACGCCGCTAAAGACCCCAGC
*
14260958 ATTAGCGGCT-CTTTCTC-
65 ATTAGCGG-TGTTTTC-CA
* * * *
14260975 AAAACGCCGCTAAAGACCCCAGCATTAGCGGCGGTTTTCTAAAAACGCCACTAAAGACCCCAGAA
1 AAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCCAGCA
*
14261040 TTAGCGCTGCTTTTCCA
66 TTAGCGGTG-TTTTCCA
* * *
14261057 AAAACGCTGCTAATGACCTCAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGA-CCCAGCA
1 AAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCCAGCA
14261121 TTAGCGGTGATTTTCCA
66 TTAGCGGTG-TTTTCCA
* ** *
14261138 AAAATGCCGCTAAAGACCCCAAAATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAAACCCCCAGC
1 AAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGA-CCCCAGC
* * **
14261203 ATTAGCAGCGCTTTTTTA
65 ATTAGCGGTG-TTTTCCA
* *
14261221 AAAACGCCGTTAAAGCCCCCA
1 AAAACGCCGCTAAAGACCCCA
14261242 AAGGAAAGAA
Statistics
Matches: 227, Mismatches: 33, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
80 32 0.14
81 103 0.45
82 55 0.24
83 37 0.16
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.20
Consensus pattern (81 bp):
AAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCCAGCA
TTAGCGGTGTTTTCCA
Found at i:14268980 original size:16 final size:16
Alignment explanation
Indices: 14268959--14269000 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
14268949 AATAATTTGA
*
14268959 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
14268975 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
14268991 TAGTTTTAAT
1 TAATTTTAAT
14269001 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:14268984 original size:22 final size:23
Alignment explanation
Indices: 14268974--14269029 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
14268964 TTACTAACAA
* * *
14268974 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
14268996 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
14269019 TTAATTTTAAT
1 TTAATTTTAAT
14269030 TTTAATTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:14269312 original size:13 final size:13
Alignment explanation
Indices: 14269296--14269392 Score: 77
Period size: 13 Copynumber: 7.4 Consensus size: 13
14269286 AAATGGTAAA
*
14269296 ATGAAATATTTAG
1 ATGAAATATTTAT
**
14269309 ATGAAATGGTTAT
1 ATGAAATATTTAT
*
14269322 ATGAAATGTTTAT
1 ATGAAATATTTAT
**
14269335 ATCGAAATAGATAT
1 AT-GAAATATTTAT
** *
14269349 ATGAAACGTTGAT
1 ATGAAATATTTAT
* * *
14269362 ACGAAGTGTTTAT
1 ATGAAATATTTAT
14269375 ATGAAATATTTAT
1 ATGAAATATTTAT
14269388 ATGAA
1 ATGAA
14269393 TATAGATATG
Statistics
Matches: 64, Mismatches: 19, Indels: 2
0.75 0.22 0.02
Matches are distributed among these distances:
13 54 0.84
14 10 0.16
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.37
Consensus pattern (13 bp):
ATGAAATATTTAT
Found at i:14269312 original size:26 final size:26
Alignment explanation
Indices: 14269283--14269342 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
14269273 AAATGTGTAA
14269283 ATGAAATGGTAAAATGAAATATTTAG
1 ATGAAATGGTAAAATGAAATATTTAG
* * * *
14269309 ATGAAATGGTTATATGAAATGTTTAT
1 ATGAAATGGTAAAATGAAATATTTAG
14269335 ATCGAAAT
1 AT-GAAAT
14269343 AGATATATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.45, C:0.02, G:0.18, T:0.35
Consensus pattern (26 bp):
ATGAAATGGTAAAATGAAATATTTAG
Found at i:14269354 original size:53 final size:53
Alignment explanation
Indices: 14269296--14269407 Score: 127
Period size: 53 Copynumber: 2.1 Consensus size: 53
14269286 AAATGGTAAA
* * * *
14269296 ATGAAATATTTAGATGAAATGGTTATATGAAATGTTTATATCGAA-ATAGATAT
1 ATGAAACATTGAGACGAAATGGTTATATGAAATATTTATAT-GAATATAGATAT
* * * *
14269349 ATGAAACGTTGATACGAAGTGTTTATATGAAATATTTATATGAATATAGATAT
1 ATGAAACATTGAGACGAAATGGTTATATGAAATATTTATATGAATATAGATAT
*
14269402 GTGAAA
1 ATGAAA
14269408 AGGGACATTT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
52 3 0.06
53 46 0.94
ACGTcount: A:0.43, C:0.03, G:0.18, T:0.37
Consensus pattern (53 bp):
ATGAAACATTGAGACGAAATGGTTATATGAAATATTTATATGAATATAGATAT
Found at i:14275952 original size:30 final size:33
Alignment explanation
Indices: 14275895--14275970 Score: 86
Period size: 30 Copynumber: 2.4 Consensus size: 33
14275885 AGAGATATGT
* *
14275895 ATATATATACATATATATATAATAAGATAGATAG
1 ATATATATA-ATATAGATATAATAAGATAGATAA
*
14275929 ATATATATAATA-AGATAT-A-AAGATATATAA
1 ATATATATAATATAGATATAATAAGATAGATAA
*
14275959 ATAAATATAATA
1 ATATATATAATA
14275971 GTAATAACAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 20 0.53
31 1 0.03
32 5 0.13
33 3 0.08
34 9 0.24
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.34
Consensus pattern (33 bp):
ATATATATAATATAGATATAATAAGATAGATAA
Found at i:14275966 original size:20 final size:22
Alignment explanation
Indices: 14275907--14275968 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 22
14275897 ATATATACAT
* *
14275907 ATATATATAATAAGATAGATAG
1 ATATATATAATAAGATATAAAG
14275929 ATATATATAATAAGATATAAAG
1 ATATATATAATAAGATATAAAG
14275951 ATATATA-AATAA-ATATAA
1 ATATATATAATAAGATATAA
14275969 TAGTAATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.16
21 5 0.13
22 27 0.71
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (22 bp):
ATATATATAATAAGATATAAAG
Found at i:14276805 original size:30 final size:33
Alignment explanation
Indices: 14276748--14276823 Score: 86
Period size: 30 Copynumber: 2.4 Consensus size: 33
14276738 AGAGATATGT
* *
14276748 ATATATATACATATATATATAATAAGATAGATAG
1 ATATATATA-ATATAGATATAATAAGATAGATAA
*
14276782 ATATATATAATA-AGATAT-A-AAGATATATAA
1 ATATATATAATATAGATATAATAAGATAGATAA
*
14276812 ATAAATATAATA
1 ATATATATAATA
14276824 GTAATAACAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 20 0.53
31 1 0.03
32 5 0.13
33 3 0.08
34 9 0.24
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.34
Consensus pattern (33 bp):
ATATATATAATATAGATATAATAAGATAGATAA
Found at i:14276819 original size:20 final size:22
Alignment explanation
Indices: 14276760--14276821 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 22
14276750 ATATATACAT
* *
14276760 ATATATATAATAAGATAGATAG
1 ATATATATAATAAGATATAAAG
14276782 ATATATATAATAAGATATAAAG
1 ATATATATAATAAGATATAAAG
14276804 ATATATA-AATAA-ATATAA
1 ATATATATAATAAGATATAA
14276822 TAGTAATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.16
21 5 0.13
22 27 0.71
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (22 bp):
ATATATATAATAAGATATAAAG
Found at i:14277172 original size:54 final size:54
Alignment explanation
Indices: 14277090--14277196 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
14277080 CTAAAGGGAA
*
14277090 ATAAACCCAGTTTCAGGCCACGCGTCCCCTCCCCAGGGGTCCAACGAATTGAGT
1 ATAAACCCAATTTCAGGCCACGCGTCCCCTCCCCAGGGGTCCAACGAATTGAGT
14277144 ATAAACCCAATTTCAGGCCACGCGTCCCCTCCCCAGGGGTCCAACGAATTGAG
1 ATAAACCCAATTTCAGGCCACGCGTCCCCTCCCCAGGGGTCCAACGAATTGAG
14277197 GACCAAATTA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.25, C:0.36, G:0.21, T:0.18
Consensus pattern (54 bp):
ATAAACCCAATTTCAGGCCACGCGTCCCCTCCCCAGGGGTCCAACGAATTGAGT
Found at i:14293382 original size:40 final size:40
Alignment explanation
Indices: 14293327--14293527 Score: 285
Period size: 40 Copynumber: 5.0 Consensus size: 40
14293317 CATTCCAGAT
* * *
14293327 AGAAGCTCATAAGAGCTAATCCAACTAAAACACGTCAAAC
1 AGAAGCTCATAAGAGCTGATCCAACCAAAACACGCCAAAC
* *
14293367 AGAAGCTCATAAGAGCTGATCCAACCGAAACACACCAAAC
1 AGAAGCTCATAAGAGCTGATCCAACCAAAACACGCCAAAC
* *
14293407 AGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAT
1 AGAAGCTCATAAGAGCTGATCCAACCAAAACACGCCAAAC
* * *
14293447 AGAAGCTCATAAGAGCTTATCTAACCAAAACACGCCAAAT
1 AGAAGCTCATAAGAGCTGATCCAACCAAAACACGCCAAAC
* * *
14293487 AGAAGCTCATAAGAGCTTATCTAACCAAAACACGCCGAAC
1 AGAAGCTCATAAGAGCTGATCCAACCAAAACACGCCAAAC
14293527 A
1 A
14293528 AATAGTATAA
Statistics
Matches: 149, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 149 1.00
ACGTcount: A:0.45, C:0.27, G:0.14, T:0.14
Consensus pattern (40 bp):
AGAAGCTCATAAGAGCTGATCCAACCAAAACACGCCAAAC
Found at i:14295233 original size:17 final size:16
Alignment explanation
Indices: 14295213--14295258 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
14295203 AAAAATGGAA
14295213 AAAAATATAAAAATTT
1 AAAAATATAAAAATTT
14295229 GAAAAA-ATAAAATATTT
1 -AAAAATATAAAA-ATTT
*
14295246 AAAACTA-AAAAAT
1 AAAAATATAAAAAT
14295259 AAAAATAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 2 0.08
16 14 0.54
17 10 0.38
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (16 bp):
AAAAATATAAAAATTT
Found at i:14295238 original size:16 final size:17
Alignment explanation
Indices: 14295213--14295259 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
14295203 AAAAATGGAA
14295213 AAAAATATAAAA-ATTT
1 AAAAATATAAAATATTT
14295229 GAAAAA-ATAAAATATTT
1 -AAAAATATAAAATATTT
* *
14295246 AAAACTAAAAAATA
1 AAAAATATAAAATA
14295260 AAAATAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 10 0.38
17 16 0.62
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (17 bp):
AAAAATATAAAATATTT
Found at i:14295258 original size:22 final size:23
Alignment explanation
Indices: 14295230--14295272 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
14295220 TAAAAATTTG
*
14295230 AAAAAAT-AAAATATTTAAAACT
1 AAAAAATAAAAATAATTAAAACT
14295252 AAAAAATAAAAATAATTAAAA
1 AAAAAATAAAAATAATTAAAA
14295273 AATAATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (23 bp):
AAAAAATAAAAATAATTAAAACT
Found at i:14298784 original size:17 final size:18
Alignment explanation
Indices: 14298753--14298786 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14298743 TAATTTAGCC
*
14298753 AAGAATAAGAGTTAAATT
1 AAGAATAAGAATTAAATT
14298771 AAGAA-AAGAATTAAAT
1 AAGAATAAGAATTAAAT
14298787 GCTAAGACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.24
Consensus pattern (18 bp):
AAGAATAAGAATTAAATT
Found at i:14302982 original size:27 final size:27
Alignment explanation
Indices: 14302909--14302983 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
14302899 TGCAACCCTA
* * *
14302909 TGTTTAATGTCCTAACGAACTACCTCG
1 TGTTTACTGTCCTAGCGGACTACCTCG
* *
14302936 TGTTTACTATCCTAGAGGACTACCTCG
1 TGTTTACTGTCCTAGCGGACTACCTCG
*
14302963 TGTTTACTGTTCTAGCGGACT
1 TGTTTACTGTCCTAGCGGACT
14302984 CCATATGCTG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (27 bp):
TGTTTACTGTCCTAGCGGACTACCTCG
Found at i:14303272 original size:161 final size:160
Alignment explanation
Indices: 14303002--14303340 Score: 426
Period size: 161 Copynumber: 2.1 Consensus size: 160
14302992 TGCAATAGTT
* *
14303002 GAGCTATAATCTTACACATGTAACCCCATGTTTAATGTCCTGGTAGATTACCTCGTATTCACTAT
1 GAGCTAT-ATCTTACACATGTAACCCCATGTTTAATATCCTGGTAGATTACCTCGGATTCACTAT
* * * * *
14303067 CCTGATGGACTCTTTATGCTACCACAACCAAGCTATGGTCTTACACATGTAACCCTATGTTTGAT
65 CCTGATGGACTCCTTATACTACCACAACCAAGCTATGATCTTACACATGTAACCCCATGTTTAAT
* * *
14303132 GTCTCGACAAACTTTATTGGTTGTCATAGGC
130 GTCCCAACAAACTCTATTGGTTGTCATAGGC
* * * * * *
14303163 GAGCTATGATCTTACATATGTAACCCCATGTTTAATATCTTGGTGGATTACCTCGGGTTTACTGT
1 GAGCTAT-ATCTTACACATGTAACCCCATGTTTAATATCCTGGTAGATTACCTCGGATTCACTAT
* * * *
14303228 CTTGATGGACTCCTTATACTGCCATAACCGAGCTATGATCTTACACATGTAACCCCATGTTTAAT
65 CCTGATGGACTCCTTATACTACCACAACCAAGCTATGATCTTACACATGTAACCCCATGTTTAAT
* *** *
14303293 TTCCCAATGGACTCTATTGGTTGTCATAGTC
130 GTCCCAACAAACTCTATTGGTTGTCATAGGC
14303324 GAGCTATAGTCTTACAC
1 GAGCTATA-TCTTACAC
14303341 TTTTAAAGCT
Statistics
Matches: 150, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
160 1 0.01
161 149 0.99
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (160 bp):
GAGCTATATCTTACACATGTAACCCCATGTTTAATATCCTGGTAGATTACCTCGGATTCACTATC
CTGATGGACTCCTTATACTACCACAACCAAGCTATGATCTTACACATGTAACCCCATGTTTAATG
TCCCAACAAACTCTATTGGTTGTCATAGGC
Found at i:14305695 original size:15 final size:16
Alignment explanation
Indices: 14305665--14305701 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
14305655 TAGAATTGAG
*
14305665 TTAAAAAATTATTTAA
1 TTAAAAAATTAATTAA
14305681 TTAAAAAA-TAATTAA
1 TTAAAAAATTAATTAA
14305696 TTAAAA
1 TTAAAA
14305702 TTAATTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TTAAAAAATTAATTAA
Found at i:14307640 original size:19 final size:19
Alignment explanation
Indices: 14307616--14307655 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
14307606 CTCAAAAGCG
14307616 AAAAGCAACAAGCAAA-CAA
1 AAAAGCAACAAG-AAAGCAA
*
14307635 AAAAGCCACAAGAAAGCAA
1 AAAAGCAACAAGAAAGCAA
14307654 AA
1 AA
14307656 TGCACACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 3 0.16
19 16 0.84
ACGTcount: A:0.68, C:0.20, G:0.12, T:0.00
Consensus pattern (19 bp):
AAAAGCAACAAGAAAGCAA
Found at i:14319543 original size:38 final size:38
Alignment explanation
Indices: 14319488--14319567 Score: 142
Period size: 38 Copynumber: 2.1 Consensus size: 38
14319478 AATTGATTTG
*
14319488 TATATGAAGATAAGTTGCTGAATTGATTCGTATATAAT
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAAT
*
14319526 TATATGAAGATAGGTTGCCGAATTGATTCGTATATAAT
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAAT
14319564 TATA
1 TATA
14319568 CATTGCTGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (38 bp):
TATATGAAGATAAGTTGCCGAATTGATTCGTATATAAT
Found at i:14319598 original size:31 final size:31
Alignment explanation
Indices: 14319546--14320048 Score: 325
Period size: 31 Copynumber: 16.3 Consensus size: 31
14319536 TAGGTTGCCG
* *
14319546 AATTGATTCGTATATAATTATACATTGCTGA
1 AATTGATTTGTATATGATTATACATTGCTGA
* * *
14319577 AATTTATTTGTATATGGTTATACATT-ATCGA
1 AATTGATTTGTATATGATTATACATTGCT-GA
** * *
14319608 AATTGATTTGTATATGAAGA-AAAGTTGCCG-
1 AATTGATTTGTATATGATTATACA-TTGCTGA
* *
14319638 AATTGATTCGTATATGATTATACATTACTGA
1 AATTGATTTGTATATGATTATACATTGCTGA
* * * *
14319669 AATTTATTTGTATATGGTTATATATT-ATCGA
1 AATTGATTTGTATATGATTATACATTGCT-GA
* ** *
14319700 AATTTATTTGTATATGAAGATA-AGTTGC-CA
1 AATTGATTTGTATATGATTATACA-TTGCTGA
* *
14319730 AATTGATTCGTATATAATTATACATTGCTGA
1 AATTGATTTGTATATGATTATACATTGCTGA
* * *
14319761 AATTTATTTGTATATGGTTATACATT-ATCGA
1 AATTGATTTGTATATGATTATACATTGCT-GA
* ** *
14319792 AATTGATTTGTATAAGAAGATA-AGTTGCCG-
1 AATTGATTTGTATATGATTATACA-TTGCTGA
* * *
14319822 AATTGATTCGTATATGGTTATACATTACTGA
1 AATTGATTTGTATATGATTATACATTGCTGA
* * * * *
14319853 AATTTATTTGTATATGGTTATATATT-ATCAA
1 AATTGATTTGTATATGATTATACATTGCT-GA
* ** *
14319884 AATTTATTTGTATATGAAGATA-AGTTGC-CA
1 AATTGATTTGTATATGATTATACA-TTGCTGA
* *
14319914 AATTGATTCGTATATAATTATACATTGCTGA
1 AATTGATTTGTATATGATTATACATTGCTGA
* * *
14319945 AATTTATTTGTATATGGTTATACATT-ATCGA
1 AATTGATTTGTATATGATTATACATTGCT-GA
** *
14319976 AATTGATTTGTATATGAAGATA-ACTTGCCGA
1 AATTGATTTGTATATGATTATACA-TTGCTGA
* * * *
14320007 ATTTGATTCGTATATGAATATATATATTGTTG-
1 AATTGATTTGTATATG-AT-TATACATTGCTGA
14320039 AATTGATTTG
1 AATTGATTTG
14320049 AGCATTGGAT
Statistics
Matches: 358, Mismatches: 88, Indels: 51
0.72 0.18 0.10
Matches are distributed among these distances:
30 97 0.27
31 244 0.68
32 9 0.03
33 7 0.02
34 1 0.00
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.43
Consensus pattern (31 bp):
AATTGATTTGTATATGATTATACATTGCTGA
Found at i:14319639 original size:92 final size:92
Alignment explanation
Indices: 14319526--14320048 Score: 841
Period size: 92 Copynumber: 5.7 Consensus size: 92
14319516 CGTATATAAT
*
14319526 TATATGAAGATAGGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
14319591 TGGTTATACATTATCGAAATTGATTTG
66 TGGTTATACATTATCGAAATTGATTTG
* * *
14319618 TATATGAAGAAAAGTTGCCGAATTGATTCGTATATGATTATACATTACTGAAATTTATTTGTATA
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
* *
14319683 TGGTTATATATTATCGAAATTTATTTG
66 TGGTTATACATTATCGAAATTGATTTG
*
14319710 TATATGAAGATAAGTTGCCAAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
14319775 TGGTTATACATTATCGAAATTGATTTG
66 TGGTTATACATTATCGAAATTGATTTG
* ** *
14319802 TATAAGAAGATAAGTTGCCGAATTGATTCGTATATGGTTATACATTACTGAAATTTATTTGTATA
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
* * *
14319867 TGGTTATATATTATCAAAATTTATTTG
66 TGGTTATACATTATCGAAATTGATTTG
*
14319894 TATATGAAGATAAGTTGCCAAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
14319959 TGGTTATACATTATCGAAATTGATTTG
66 TGGTTATACATTATCGAAATTGATTTG
* * * *
14319986 TATATGAAGATAACTTGCCGAATTTGATTCGTATATGAATATATATATTGTTG-AATTGATTTG
1 TATATGAAGATAAGTTGCCGAA-TTGATTCGTATAT-AAT-TATACATTGCTGAAATTTATTTG
14320049 AGCATTGGAT
Statistics
Matches: 395, Mismatches: 33, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
92 360 0.91
93 13 0.03
94 12 0.03
95 10 0.03
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (92 bp):
TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
TGGTTATACATTATCGAAATTGATTTG
Found at i:14319681 original size:61 final size:62
Alignment explanation
Indices: 14319546--14320022 Score: 352
Period size: 61 Copynumber: 7.8 Consensus size: 62
14319536 TAGGTTGCCG
* * * *
14319546 AATTGATTCGTATAT-AATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTA-TCGA
1 AATTGATTTGTATATGAA-GATAAATTGCCGAAATTTATTTGTATATGGTTATACATTACT-GA
* * *
14319608 AATTGATTTGTATATGAAGA-AAAGTTGCCG-AATTGATTCGTATATGATTATACATTACTGA
1 AATTGATTTGTATATGAAGATAAA-TTGCCGAAATTTATTTGTATATGGTTATACATTACTGA
* *** * ** *** * *
14319669 AATTTATTTGTATATGGTTATATATTATCGAAATTTATTTGTATATGAAGATA-AGTTGC-CA
1 AATTGATTTGTATATGAAGATAAATTGCCGAAATTTATTTGTATATGGTTATACA-TTACTGA
* * * *
14319730 AATTGATTCGTATAT-AATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTA-TCGA
1 AATTGATTTGTATATGAA-GATAAATTGCCGAAATTTATTTGTATATGGTTATACATTACT-GA
* * * *
14319792 AATTGATTTGTATAAGAAGATAAGTTGCCG-AATTGATTCGTATATGGTTATACATTACTGA
1 AATTGATTTGTATATGAAGATAAATTGCCGAAATTTATTTGTATATGGTTATACATTACTGA
* *** * ** * *** * *
14319853 AATTTATTTGTATATGGTTATATATTATCAAAATTTATTTGTATATGAAGATA-AGTTGC-CA
1 AATTGATTTGTATATGAAGATAAATTGCCGAAATTTATTTGTATATGGTTATACA-TTACTGA
* * * *
14319914 AATTGATTCGTATAT-AATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTA-TCGA
1 AATTGATTTGTATATGAA-GATAAATTGCCGAAATTTATTTGTATATGGTTATACATTACT-GA
* *
14319976 AATTGATTTGTATATGAAGATAACTTGCCG-AATTTGATTCGTATATG
1 AATTGATTTGTATATGAAGATAAATTGCCGAAATTT-ATTTGTATATG
14320023 AATATATATA
Statistics
Matches: 317, Mismatches: 78, Indels: 40
0.73 0.18 0.09
Matches are distributed among these distances:
61 189 0.60
62 122 0.38
63 6 0.02
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.43
Consensus pattern (62 bp):
AATTGATTTGTATATGAAGATAAATTGCCGAAATTTATTTGTATATGGTTATACATTACTGA
Found at i:14320286 original size:41 final size:42
Alignment explanation
Indices: 14320218--14320331 Score: 117
Period size: 41 Copynumber: 2.7 Consensus size: 42
14320208 AGAAAATGTG
*
14320218 TAAGACCATGTCTGAGACATTGACATTGTATATG-ATT-CATA
1 TAAGACCATGTCTGGGACA-TGACATTGTATATGCATTACATA
* * * *
14320259 TAAGACCCTGTTTGGGACAGTGTCATTG-ATATGCATTAACATG
1 TAAGACCATGTCTGGGACA-TGACATTGTATATGCATT-ACATA
* *
14320302 TAAGACCATATCTGGGACATGGCATTGTAT
1 TAAGACCATGTCTGGGACATGACATTGTAT
14320332 GAGCTTTATA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
40 5 0.08
41 26 0.44
42 7 0.12
43 21 0.36
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATGACATTGTATATGCATTACATA
Found at i:14325769 original size:29 final size:29
Alignment explanation
Indices: 14325735--14325792 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
14325725 ATTAAATACC
*
14325735 TAAAACTTACATTGATTTTTCCCCTTCAA
1 TAAAACTTACATTGACTTTTCCCCTTCAA
14325764 TAAAACTTACATTGACTTTTCCCCTTCAA
1 TAAAACTTACATTGACTTTTCCCCTTCAA
14325793 AAGAGAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.31, C:0.26, G:0.03, T:0.40
Consensus pattern (29 bp):
TAAAACTTACATTGACTTTTCCCCTTCAA
Found at i:14329245 original size:27 final size:27
Alignment explanation
Indices: 14329215--14329287 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 27
14329205 TGTCTTGAAT
14329215 TTGTTAGATATTGATTATGTTTTAAGC
1 TTGTTAGATATTGATTATGTTTTAAGC
14329242 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTG-----ATTATGTTTTAAGC
*
14329274 TTGTTGGATATTGA
1 TTGTTAGATATTGA
14329288 AATGATTGAC
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
27 14 0.35
32 26 0.65
ACGTcount: A:0.26, C:0.03, G:0.19, T:0.52
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTTAAGC
Found at i:14329267 original size:32 final size:32
Alignment explanation
Indices: 14329228--14329288 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
14329218 TTAGATATTG
14329228 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
*
14329260 ATTATGTTTTAAGCTTGTTGGATATTGAA
1 ATTATGTTTTAAGCTTGTTAGATATTGAA
14329289 ATGATTGACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.28, C:0.03, G:0.18, T:0.51
Consensus pattern (32 bp):
ATTATGTTTTAAGCTTGTTAGATATTGAATTT
Found at i:14346703 original size:22 final size:20
Alignment explanation
Indices: 14346660--14346698 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
14346650 TAATTTAAAA
14346660 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
*
14346680 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
14346699 ATGTAAAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:14346838 original size:14 final size:15
Alignment explanation
Indices: 14346819--14346856 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
14346809 CTAGAAAAGT
14346819 AAATCATTTTCCA-A
1 AAATCATTTTCCAGA
14346833 AAATCATTTTCCAGA
1 AAATCATTTTCCAGA
14346848 AAA-CATTTT
1 AAATCATTTT
14346857 ACTAGTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.37
Consensus pattern (15 bp):
AAATCATTTTCCAGA
Found at i:14355732 original size:50 final size:52
Alignment explanation
Indices: 14355623--14355737 Score: 126
Period size: 50 Copynumber: 2.2 Consensus size: 52
14355613 TTAATGTAAT
* * *
14355623 ACTTAATTTAATGATACAGACTTAAACTAACATGGGAGTTACATAATGCATG
1 ACTTTATTTAATGATACAGACTTAAACTAACATGGAAGTTACATAATGCATA
* * * * * *
14355675 TCATTATTT-ATGATGCATACTT-AACTAGCATTGAAGTTACATAATGCATA
1 ACTTTATTTAATGATACAGACTTAAACTAACATGGAAGTTACATAATGCATA
*
14355725 ACTTTATTAAATG
1 ACTTTATTTAATG
14355738 TAAAACCCAC
Statistics
Matches: 50, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
50 30 0.60
51 14 0.28
52 6 0.12
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (52 bp):
ACTTTATTTAATGATACAGACTTAAACTAACATGGAAGTTACATAATGCATA
Found at i:14361354 original size:39 final size:39
Alignment explanation
Indices: 14361287--14361365 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
14361277 TATTGAAAAG
* * * *
14361287 GAAAGGTTGCGATTATATGGAAAGGCACACTATGTGTGA
1 GAAAAGTTGCGATTATATAGAAAAGCACACTATATGTGA
*
14361326 GAAAAGTTGCGGTTATATAGAAAAGCACACTATATGTGA
1 GAAAAGTTGCGATTATATAGAAAAGCACACTATATGTGA
14361365 G
1 G
14361366 CATTCCTGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.37, C:0.10, G:0.28, T:0.25
Consensus pattern (39 bp):
GAAAAGTTGCGATTATATAGAAAAGCACACTATATGTGA
Found at i:14362973 original size:45 final size:45
Alignment explanation
Indices: 14362909--14363000 Score: 166
Period size: 45 Copynumber: 2.0 Consensus size: 45
14362899 TACTATATGA
* *
14362909 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
14362954 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
14362999 AC
1 AC
14363001 TGAGTATCTG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (45 bp):
ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:14383550 original size:20 final size:20
Alignment explanation
Indices: 14383521--14383560 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
14383511 GTGACCCTTG
*
14383521 TTTTCAAAATTTTCAATTTT
1 TTTTCAAAATCTTCAATTTT
* *
14383541 TTTTCCAAATCTTCTATTTT
1 TTTTCAAAATCTTCAATTTT
14383561 GATTCAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.15, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTCAAAATCTTCAATTTT
Found at i:14390448 original size:85 final size:86
Alignment explanation
Indices: 14390304--14390474 Score: 326
Period size: 85 Copynumber: 2.0 Consensus size: 86
14390294 TTAAAAATAT
*
14390304 TATAATAATCTTAATAATATTTTATTGGTACGTGATTTGTGGTAATTAACATTTGGGATAAATAT
1 TATAATAATCTTAAAAATATTTTATTGGTACGTGATTTGTGGTAATTAACATTTGGGATAAATAT
14390369 CAAAATTATATATTAATACTG
66 CAAAATTATATATTAATACTG
14390390 TATAATAATC-TAAAAATATTTTATTGGTACGTGATTTGTGGTAATTAACATTTGGGATAAATAT
1 TATAATAATCTTAAAAATATTTTATTGGTACGTGATTTGTGGTAATTAACATTTGGGATAAATAT
14390454 CAAAATTATATATTAATACTG
66 CAAAATTATATATTAATACTG
14390475 ATACAATTTG
Statistics
Matches: 84, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
85 74 0.88
86 10 0.12
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (86 bp):
TATAATAATCTTAAAAATATTTTATTGGTACGTGATTTGTGGTAATTAACATTTGGGATAAATAT
CAAAATTATATATTAATACTG
Found at i:14391118 original size:18 final size:18
Alignment explanation
Indices: 14391095--14391136 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
14391085 TTTCTGTAGT
14391095 TAATTCAATTCAACATAA
1 TAATTCAATTCAACATAA
14391113 TAATTCAATTCAACATAA
1 TAATTCAATTCAACATAA
*
14391131 TCATTC
1 TAATTC
14391137 CTTATTTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.36
Consensus pattern (18 bp):
TAATTCAATTCAACATAA
Found at i:14394324 original size:16 final size:16
Alignment explanation
Indices: 14394303--14394337 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14394293 ATTAGTAATT
*
14394303 TTTTTTATATTTCTTA
1 TTTTTTATATTTCATA
*
14394319 TTTTTTATTTTTCATA
1 TTTTTTATATTTCATA
14394335 TTT
1 TTT
14394338 AATTATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTATATTTCATA
Found at i:14394343 original size:24 final size:23
Alignment explanation
Indices: 14394303--14394349 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
14394293 ATTAGTAATT
* *
14394303 TTTTTTATATTTCTTATTTTTTA
1 TTTTTCATATTTATTATTTTTTA
14394326 TTTTTCATATTTAATTATTTTTTA
1 TTTTTCATATTT-ATTATTTTTTA
14394350 AATCTATGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (23 bp):
TTTTTCATATTTATTATTTTTTA
Found at i:14400965 original size:88 final size:88
Alignment explanation
Indices: 14400816--14401488 Score: 965
Period size: 88 Copynumber: 7.7 Consensus size: 88
14400806 AGCAGATCAG
* *
14400816 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCTAAGCAGATCGAAGACACCAACCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
14400881 CCCGGGGTTGCAGCGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * *
14400904 TAAAAATAGCAGATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCAAAGACACTAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
14400969 CCCTGGGTTGCAGCGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * * * * *
14400992 TAAAAATAACAGATATTGTCTTCTTGCACCGACAGCGAAGCAGATCAAAGACACTAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * *
14401057 CCCTGAGTTGCAGTGAAGTAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * *
14401080 TAAAAATGGCAGATCTTGCCTTCCTGCACCGACAGCAAAGCAGATCGAAGATACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * **
14401145 CCCTAGGTTGCAGTGGAGTTGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* *
14401168 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAGTCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
14401233 CCCTGGGTTGCAGCAGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
14401256 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
14401321 CTCTGGGTTGTAGCGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * * * * *
14401344 TAAAAATAGTAAACCTTGCCTTCCTGCGCCGACAGCGAAGCAGATC-AATAACCCCAG--TTGCC
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAA-GACACCAGCCTTGCC
14401406 TCCCTGGGTTGCAGCGGAGCAGGT
65 TCCCTGGGTTGCAGCGGAGCAGGT
* * * * *
14401430 TAAAAATAACATATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGATGACCCCAGCC
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCC
14401489 CTATCTCCCT
Statistics
Matches: 524, Mismatches: 57, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
86 74 0.14
87 3 0.01
88 447 0.85
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (88 bp):
TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
CCCTGGGTTGCAGCGGAGCAGGT
Found at i:14401142 original size:44 final size:44
Alignment explanation
Indices: 14400829--14401320 Score: 163
Period size: 44 Copynumber: 11.2 Consensus size: 44
14400819 AAATAGCAGA
* * *
14400829 TCTTGCCTTCCTGCACCGACAGCTAAGCAGATCGAAGACACCAA
1 TCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAG
* * * **** * * ** * *
14400873 CCTTGCCTCCCGGGGTTG-CAGCGGAGCAGGTTAAAAATAGCAG
1 TCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAG
* * * *
14400916 ATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCAAAGACACTAG
1 -TCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAG
* * **** * * ** * *
14400961 CCTTGCCTCCCTGGGTTG-CAGCGGAGCAGGTTAAAAATAACAG
1 TCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAG
* * * * * *
14401004 ATATTGTCTTCTTGCACCGACAGCGAAGCAGATCAAAGACACTAG
1 -TCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAG
* * ** * * * ** * **
14401049 CCTTGCCTCCCTG-AGTTG-CAGTGAAGTAGGTTAAAAATGGCAG
1 TCTTGCCTTCCTGCA-CCGACAGCGAAGCAGATCGAAGATACCAG
*
14401092 ATCTTGCCTTCCTGCACCGACAGCAAAGCAGATCGAAGATACCAG
1 -TCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAG
* * *** * * ** * ** * *
14401137 CCTTGCCTCCCTAG-GTTG-CAGTGGAGTTGGTTAAAAATAGCAG
1 TCTTGCCTTCCT-GCACCGACAGCGAAGCAGATCGAAGATACCAG
14401180 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAG
1 -TCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAG
* **** * ** * *
14401225 TCTTGCCTCCCTGGGTTG-CAGC-AGAGCAGGTTAAAAATAGCAG
1 TCTTGCCTTCCTGCACCGACAGCGA-AGCAGATCGAAGATACCAG
*
14401268 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAG
1 -TCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAG
*
14401313 CCTTGCCT
1 TCTTGCCT
14401321 CTCTGGGTTG
Statistics
Matches: 291, Mismatches: 141, Indels: 32
0.63 0.30 0.07
Matches are distributed among these distances:
42 1 0.00
43 85 0.29
44 117 0.40
45 87 0.30
46 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (44 bp):
TCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAG
Found at i:14401564 original size:44 final size:44
Alignment explanation
Indices: 14401490--14401695 Score: 145
Period size: 44 Copynumber: 4.7 Consensus size: 44
14401480 ACCCCAGCCC
* *
14401490 TATCTCCCTGGTCAGCAGTGGAA-TAAGTTGAAGATTGTGAATCT
1 TATCTCCCTGGTCAGCAGT-GAAGTAGGTTGAAGATTGTCAATCT
* * *
14401534 TATCTCCCCGGTCAGCAGTGAAGTAGGTTGAAAATT-ACATATCT
1 TATCTCCCTGGTCAGCAGTGAAGTAGGTTGAAGATTGTCA-ATCT
* * * * * * *** **
14401578 TATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAG-TCCCCAGCCT
1 TATCTCCCT-GGTCAGCAGTGAAGTAGGTTGAAGATTGTCAATCT
* *
14401621 TATCTCCCTGGTCAGTAGTGGAA-TAGGTTGAAGATTGTGAATCT
1 TATCTCCCTGGTCAGCAGT-GAAGTAGGTTGAAGATTGTCAATCT
* *
14401665 TACCTCCCTGAG-CAGCAGTGGAGTAGGTTGA
1 TATCTCCCTG-GTCAGCAGTGAAGTAGGTTGA
14401696 CAACAGCAGA
Statistics
Matches: 122, Mismatches: 31, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
42 1 0.01
43 32 0.26
44 87 0.71
45 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGAAGTAGGTTGAAGATTGTCAATCT
Found at i:14401755 original size:131 final size:131
Alignment explanation
Indices: 14401426--14401743 Score: 372
Period size: 131 Copynumber: 2.4 Consensus size: 131
14401416 GCAGCGGAGC
* * * * * * *
14401426 AGGTTAAAAATAACATATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGATGACCCCAGCCCT
1 AGGTTGAAAATCACAGATCTTGCCTTCCTGTACAG-CAGTGAAGCAGATCGAAGACCCCAGCCTT
*
14401491 ATCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTGTGAATCTTATCTCCCCGGTCAGCAGTGAA
65 ATCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTGTGAATCTTACCTCCCCGGTCAGCAGTGAA
14401556 GT
130 GT
* * ** * * * * *
14401558 AGGTTGAAAATTACATATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGTCCCCAGCCTT
1 AGGTTGAAAATCACAGATCTTGCCTTCCTGTA-CAGCAGTGAAGCAGATCGAAGACCCCAGCCTT
* * * *
14401622 ATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCTTACCTCCCTGAG-CAGCAGTGG
65 ATCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTGTGAATCTTACCTCCCCG-GTCAGCAGTGA
14401686 AGT
129 AGT
* *
14401689 AGGTTGACAA-CAGCAGATCTTGCCTTCCTGTACTGCAGTGAAGCAGATCGAAGAC
1 AGGTTGAAAATCA-CAGATCTTGCCTTCCTGTACAGCAGTGAAGCAGATCGAAGAC
14401744 ATCAGTTTTA
Statistics
Matches: 153, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
130 1 0.01
131 124 0.81
132 28 0.18
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (131 bp):
AGGTTGAAAATCACAGATCTTGCCTTCCTGTACAGCAGTGAAGCAGATCGAAGACCCCAGCCTTA
TCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTGTGAATCTTACCTCCCCGGTCAGCAGTGAAG
T
Found at i:14402017 original size:100 final size:99
Alignment explanation
Indices: 14401894--14402082 Score: 236
Period size: 100 Copynumber: 1.9 Consensus size: 99
14401884 ACAGTAGAGC
* ** * * * *
14401894 AGATTGAAGCCGCAACGACGAATCTTAC-TCTTTTGGCGGTGTGGTGGAACAGGTTGAAGGTACA
1 AGATTGAAGCCACAACGACGAATCTTACTTC-CCTAGCGGTGTAGTGGAACAGATTGAAGCTACA
**
14401958 ACGGTGAATCTCGTTTCCCCAACATTGCAATTAAAA
65 ACGACGAATCTCGTTT-CCCAACATTGCAATTAAAA
* * *
14401994 AGATTGATGCCACAACGGCGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCACAACGACGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCTACAA
*
14402059 CGACGAATCTTGTTTCCCAACATT
66 CGACGAATCTCGTTTCCCAACATT
14402083 CCAGATGGCG
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
99 9 0.12
100 64 0.85
101 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (99 bp):
AGATTGAAGCCACAACGACGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCTACAA
CGACGAATCTCGTTTCCCAACATTGCAATTAAAA
Found at i:14402190 original size:44 final size:44
Alignment explanation
Indices: 14402093--14402191 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 44
14402083 CCAGATGGCG
** * *
14402093 AATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAGGTTACAGCAGAGCAGATTAAAGACAAC
* * *
14402137 AATCATATCTCCCTGAGGTTACAGCAGAGCGGATTAAA-ATAAC
1 AATCTTATCTCCCTGAGGTTACAGCAGAGCAGATTAAAGACAAC
14402180 AGATCTTATCTC
1 A-ATCTTATCTC
14402192 TCTAAAGTTG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 3 0.07
44 43 0.93
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTGAGGTTACAGCAGAGCAGATTAAAGACAAC
Found at i:14403637 original size:16 final size:16
Alignment explanation
Indices: 14403616--14403650 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14403606 AATTAGTAAT
*
14403616 TTTTTTATATTTCTTA
1 TTTTTTATATTTCATA
*
14403632 TTTTTTATTTTTCATA
1 TTTTTTATATTTCATA
14403648 TTT
1 TTT
14403651 AATTATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTATATTTCATA
Found at i:14403641 original size:24 final size:24
Alignment explanation
Indices: 14403616--14403662 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
14403606 AATTAGTAAT
* *
14403616 TTTTTTATATTT-CTTATTTTTTA
1 TTTTTCATATTTAATTATTTTTTA
14403639 TTTTTCATATTTAATTATTTTTTA
1 TTTTTCATATTTAATTATTTTTTA
14403663 AATCTATGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTTTCATATTTAATTATTTTTTA
Found at i:14404223 original size:100 final size:99
Alignment explanation
Indices: 14404050--14404238 Score: 236
Period size: 100 Copynumber: 1.9 Consensus size: 99
14404040 ACAGTAGAGC
* ** * * * *
14404050 AGATTGAAGCCGCAACGACGAATCTTACTCTTTTGGCGGTGTGGTGGAACAGGTTGAAGGTACAA
1 AGATTGAAGCCACAACGACGAATCTTACTCTCCTAGCGGTGTAGTGGAACAGATTGAAGCTACAA
**
14404115 CGGTGAATCTCGTTTCCCCAACATTGCAATTAAAA
66 CGACGAATCTCGTTT-CCCAACATTGCAATTAAAA
* * *
14404150 AGATTGATGCCACAACGGCGAATCTTACT-TCCCTAGCGGTGTAGTGGAACAGATTGAAGCTACG
1 AGATTGAAGCCACAACGACGAATCTTACTCT-CCTAGCGGTGTAGTGGAACAGATTGAAGCTACA
*
14404214 ACGACGAATCTTGTTTCCCAACATT
65 ACGACGAATCTCGTTTCCCAACATT
14404239 CCAGATGGCG
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
99 10 0.13
100 65 0.87
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (99 bp):
AGATTGAAGCCACAACGACGAATCTTACTCTCCTAGCGGTGTAGTGGAACAGATTGAAGCTACAA
CGACGAATCTCGTTTCCCAACATTGCAATTAAAA
Found at i:14404346 original size:44 final size:44
Alignment explanation
Indices: 14404249--14404347 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 44
14404239 CCAGATGGCG
** * *
14404249 AATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAGGTTACAGCAGAGCAGATTAAAGACAAC
* * *
14404293 AATCATATCTCCCTGAGGTTACAGCAGAGCGGATTAAA-ATAAC
1 AATCTTATCTCCCTGAGGTTACAGCAGAGCAGATTAAAGACAAC
14404336 AGATCTTATCTC
1 A-ATCTTATCTC
14404348 TCTAAAGTTG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 3 0.07
44 43 0.93
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTGAGGTTACAGCAGAGCAGATTAAAGACAAC
Found at i:14406230 original size:24 final size:24
Alignment explanation
Indices: 14406203--14406250 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
14406193 AATTAGTAAT
* **
14406203 TTTTTTATATTTTCTTATTTTTTA
1 TTTTTCATATTTAATTATTTTTTA
14406227 TTTTTCATATTTAATTATTTTTTA
1 TTTTTCATATTTAATTATTTTTTA
14406251 AATCTATGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTTCATATTTAATTATTTTTTA
Found at i:14406231 original size:16 final size:16
Alignment explanation
Indices: 14406203--14406248 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
14406193 AATTAGTAAT
*
14406203 TTTTTTATATTTTCTTA
1 TTTTTTAT-TTTTCATA
14406220 TTTTTTATTTTTCATA
1 TTTTTTATTTTTCATA
*
14406236 TTTAATTATTTTT
1 TTT-TTTATTTTT
14406249 TAAATCTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 10 0.38
17 16 0.62
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTATTTTTCATA
Found at i:14415948 original size:17 final size:17
Alignment explanation
Indices: 14415928--14415970 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
14415918 CTCGCAAATA
14415928 TGGTGAGCTCACAGTCT
1 TGGTGAGCTCACAGTCT
14415945 TGGTGAGCTCACAGTCT
1 TGGTGAGCTCACAGTCT
14415962 TGGTGAGCT
1 TGGTGAGCT
14415971 AGGTTCGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.16, C:0.21, G:0.33, T:0.30
Consensus pattern (17 bp):
TGGTGAGCTCACAGTCT
Found at i:14416369 original size:20 final size:20
Alignment explanation
Indices: 14416341--14416381 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14416331 ATTTTTTTAA
14416341 CTAAACCATTTGAATTAAAT
1 CTAAACCATTTGAATTAAAT
* *
14416361 CTAAGCCATTTTAATTAAAT
1 CTAAACCATTTGAATTAAAT
14416381 C
1 C
14416382 AAGAACAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (20 bp):
CTAAACCATTTGAATTAAAT
Found at i:14419979 original size:22 final size:22
Alignment explanation
Indices: 14419945--14419988 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
14419935 TAGATTTGTG
* *
14419945 AAAATTTATTATAAAAATAATT
1 AAAATTCAATATAAAAATAATT
**
14419967 AAAATTCAATATATTAATAATT
1 AAAATTCAATATAAAAATAATT
14419989 TAAGTGAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTCAATATAAAAATAATT
Found at i:14420644 original size:34 final size:34
Alignment explanation
Indices: 14420601--14420672 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
14420591 TCATTTTGCA
14420601 TTTTGAGTACACATGCTCTTT-TTATGTCTATTTC
1 TTTTGAGTACACATGCTCTTTCTT-TGTCTATTTC
* * *
14420635 TTTTGAGTACATATGCTCTTTCTTTTTCTTTTTC
1 TTTTGAGTACACATGCTCTTTCTTTGTCTATTTC
14420669 TTTT
1 TTTT
14420673 TCTTTTTCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 32 0.94
35 2 0.06
ACGTcount: A:0.14, C:0.17, G:0.10, T:0.60
Consensus pattern (34 bp):
TTTTGAGTACACATGCTCTTTCTTTGTCTATTTC
Found at i:14420664 original size:6 final size:6
Alignment explanation
Indices: 14420653--14420691 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
14420643 ACATATGCTC
14420653 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
14420692 TTGAGCATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:14423618 original size:15 final size:16
Alignment explanation
Indices: 14423591--14423620 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14423581 AATAACAATT
14423591 AATATATATTATATAA
1 AATATATATTATATAA
14423607 AATATA-ATTATATA
1 AATATATATTATATA
14423621 TTAGTTGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:14424175 original size:307 final size:308
Alignment explanation
Indices: 14423610--14424206 Score: 1187
Period size: 307 Copynumber: 1.9 Consensus size: 308
14423600 TATATAAAAT
14423610 ATAATTATATATTAGTTGTTATCATCCTATTTATTAAAAATAAATATTAAAAACTTTTATTTTAG
1 ATAATTATATATTAGTTGTTATCATCCTATTTATTAAAAATAAATATTAAAAACTTTTATTTTAG
14423675 ATGTTTTAAAAATATTTACAGAAAAAGACAGTTAATTTTAATATTTACAAAAAGGATAGTCAATT
66 ATGTTTTAAAAATATTTACAGAAAAAGACAGTTAATTTTAATATTTACAAAAAGGATAGTCAATT
14423740 ATTGCAAATAATTCAATTAAGTACCTAGACTTAAAGATAATTTGAAAATTAGGCTACAAACTAAA
131 ATTGCAAATAATTCAATTAAGTACCTAGACTTAAAGATAATTTGAAAATTAGGCTACAAACTAAA
14423805 ACTTGGATCAAAATTGACCCTTTGATTTGAAAAATTAAAAATTTATTTTGTTACTTAGGAAATAT
196 ACTTGGATCAAAATTGACCCTTTGATTTGAAAAATTAAAAATTTATTTTGTTACTTAGGAAATAT
14423870 TTTCTTGGAAGATTATGTTAAAATCAATTCCCGGGAAAGATTGGAGGG
261 TTTCTTGGAAGATTATGTTAAAATCAATTCCCGGGAAAGATTGGAGGG
14423918 ATAATTATAT-TTAGTTGTTATCATCCTATTTATTAAAAATAAATATTAAAAACTTTTATTTTAG
1 ATAATTATATATTAGTTGTTATCATCCTATTTATTAAAAATAAATATTAAAAACTTTTATTTTAG
14423982 ATGTTTTAAAAATATTTACAGAAAAAGACAGTTAATTTTAATATTTACAAAAAGGATAGTCAATT
66 ATGTTTTAAAAATATTTACAGAAAAAGACAGTTAATTTTAATATTTACAAAAAGGATAGTCAATT
14424047 ATTGCAAATAATTCAATTAAGTACCTAGACTTAAAGATAATTTGAAAATTAGGCTACAAACTAAA
131 ATTGCAAATAATTCAATTAAGTACCTAGACTTAAAGATAATTTGAAAATTAGGCTACAAACTAAA
14424112 ACTTGGATCAAAATTGACCCTTTGATTTGAAAAATTAAAAATTTATTTTGTTACTTAGGAAATAT
196 ACTTGGATCAAAATTGACCCTTTGATTTGAAAAATTAAAAATTTATTTTGTTACTTAGGAAATAT
14424177 TTTCTTGGAAGATTATGTTAAAATCAATTC
261 TTTCTTGGAAGATTATGTTAAAATCAATTC
14424207 TCAAGAAATA
Statistics
Matches: 289, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
307 279 0.97
308 10 0.03
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (308 bp):
ATAATTATATATTAGTTGTTATCATCCTATTTATTAAAAATAAATATTAAAAACTTTTATTTTAG
ATGTTTTAAAAATATTTACAGAAAAAGACAGTTAATTTTAATATTTACAAAAAGGATAGTCAATT
ATTGCAAATAATTCAATTAAGTACCTAGACTTAAAGATAATTTGAAAATTAGGCTACAAACTAAA
ACTTGGATCAAAATTGACCCTTTGATTTGAAAAATTAAAAATTTATTTTGTTACTTAGGAAATAT
TTTCTTGGAAGATTATGTTAAAATCAATTCCCGGGAAAGATTGGAGGG
Found at i:14427093 original size:15 final size:15
Alignment explanation
Indices: 14427073--14427103 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14427063 AGTCACATAA
14427073 TTCACATCTATCTAG
1 TTCACATCTATCTAG
14427088 TTCACATCTATCTAG
1 TTCACATCTATCTAG
14427103 T
1 T
14427104 GCACCAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (15 bp):
TTCACATCTATCTAG
Found at i:14428718 original size:21 final size:21
Alignment explanation
Indices: 14428692--14428734 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
14428682 TCCTAAGCGT
14428692 ACAAAGCATTGATTAGTTCAA
1 ACAAAGCATTGATTAGTTCAA
14428713 ACAAAGCATTGATTAGTTCAA
1 ACAAAGCATTGATTAGTTCAA
14428734 A
1 A
14428735 GAGTGAGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (21 bp):
ACAAAGCATTGATTAGTTCAA
Found at i:14430306 original size:2 final size:2
Alignment explanation
Indices: 14430299--14430330 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14430289 ATAAGATAGG
14430299 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14430331 ACATTCTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14430385 original size:7 final size:7
Alignment explanation
Indices: 14430373--14430398 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14430363 AAGAAAAAAT
14430373 AATTTTA
1 AATTTTA
14430380 AATTTTA
1 AATTTTA
14430387 AATTTTA
1 AATTTTA
14430394 AATTT
1 AATTT
14430399 ACTTATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
AATTTTA
Found at i:14431511 original size:2 final size:2
Alignment explanation
Indices: 14431504--14431533 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14431494 ATAAGATAGG
14431504 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14431534 ACATTCTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14431588 original size:7 final size:7
Alignment explanation
Indices: 14431576--14431601 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14431566 AAGAAAAAAT
14431576 AATTTTA
1 AATTTTA
14431583 AATTTTA
1 AATTTTA
14431590 AATTTTA
1 AATTTTA
14431597 AATTT
1 AATTT
14431602 ACTTATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
AATTTTA
Found at i:14434439 original size:144 final size:144
Alignment explanation
Indices: 14434179--14434456 Score: 486
Period size: 144 Copynumber: 1.9 Consensus size: 144
14434169 CTTCTCCGAA
*
14434179 AATTACTCGCCACTAAAAGAGATAGTAGTTTCACCGAGGAGAGATGACATCTTGGAGGAGAAGTG
1 AATTACTCGCCACTAAAAAAGATAGTAGTTTCACCGAGGAGAGATGACATCTTGGAGGAGAAGTG
*
14434244 GATGGCAATTCTTCAGAATCTTCGAGAAGAGGACATCGAATGGAGAGCTCCTTGGTTACTTCCGG
66 GATGGCAATTCTTCAGAATCTTCGAGAAGAGGACATCGAATAGAGAGCTCCTTGGTTACTTCCGG
14434309 ATGACATCTCTGAG
131 ATGACATCTCTGAG
* * * *
14434323 AATTACTCGCCGCTAAAAAAGATAGTAGTTTTACCGAGGAGAGATGGCATTTTGGAGGAGAAGTG
1 AATTACTCGCCACTAAAAAAGATAGTAGTTTCACCGAGGAGAGATGACATCTTGGAGGAGAAGTG
14434388 GATGGCAATTCTTCAGAATCTTCTG-GAAGAGGACATCGAATAGAGAGCTCCTTGGTTACTTCCG
66 GATGGCAATTCTTCAGAATCTTC-GAGAAGAGGACATCGAATAGAGAGCTCCTTGGTTACTTCCG
14434452 GATGA
130 GATGA
14434457 GGTCCTATAT
Statistics
Matches: 127, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
144 126 0.99
145 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (144 bp):
AATTACTCGCCACTAAAAAAGATAGTAGTTTCACCGAGGAGAGATGACATCTTGGAGGAGAAGTG
GATGGCAATTCTTCAGAATCTTCGAGAAGAGGACATCGAATAGAGAGCTCCTTGGTTACTTCCGG
ATGACATCTCTGAG
Found at i:14444203 original size:45 final size:45
Alignment explanation
Indices: 14444128--14444503 Score: 218
Period size: 45 Copynumber: 9.0 Consensus size: 45
14444118 CACAGTGGAA
* * * * *
14444128 TGAAGATAGCAAGTTTTATCTCCTTAAAGTTGCAGTGGAACAGAC
1 TGAAGAGAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
* * *
14444173 TTAAGAGAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGAC
1 TGAAGAGAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
* *
14444218 TGAAGATG-GCAAATCTTA-CTCCCTGAAGTTACAGTGGAGC-G--
1 TGAAGA-GAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
** * *
14444259 -G-A-TTA--AAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGAC
1 TGAAGAGAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
*
14444299 TGAAGATG-GCAAATCTTA-CTCCCTGAAGTTGCAGTGGA--A-A-
1 TGAAGA-GAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
** * * *
14444339 -G-TCA-A-TAA-TCCTATCTCCCTAAAGTTGCAGT-G-G-AG--
1 TGAAGAGAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
* * * *
14444374 TG--GATTA--AAGTCTTATCTCTCTGAAGTTGTAGTAGAGCAGAC
1 TGAAGA-GAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
* * * *
14444416 TGAAGAAAGCAAGTCTTGTCCCCCTGAAGTTGCAGTGGGGCAGAC
1 TGAAGAGAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
** * **
14444461 TGATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 TGAAGAGAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
14444504 GTTGAAGTTA
Statistics
Matches: 253, Mismatches: 49, Indels: 58
0.70 0.14 0.16
Matches are distributed among these distances:
35 7 0.03
36 28 0.11
37 39 0.15
38 3 0.01
39 3 0.01
40 3 0.01
41 2 0.01
42 4 0.02
43 2 0.01
44 39 0.15
45 122 0.48
46 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (45 bp):
TGAAGAGAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
Found at i:14444282 original size:81 final size:81
Alignment explanation
Indices: 14444183--14444336 Score: 263
Period size: 81 Copynumber: 1.9 Consensus size: 81
14444173 TTAAGAGAGC
* *
14444183 AAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTACTCCCTGAAGTT
1 AAGTCTTATCCCCCTGAAGTTGCAGTAGAGCAGACTGAAGATGGCAAATCTTACTCCCTGAAGTT
14444248 ACAGTGGAGCGGATTA
66 ACAGTGGAGCGGATTA
* *
14444264 AAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGACTGAAGATGGCAAATCTTACTCCCTGAAGTT
1 AAGTCTTATCCCCCTGAAGTTGCAGTAGAGCAGACTGAAGATGGCAAATCTTACTCCCTGAAGTT
*
14444329 GCAGTGGA
66 ACAGTGGA
14444337 AAGTCAATAA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (81 bp):
AAGTCTTATCCCCCTGAAGTTGCAGTAGAGCAGACTGAAGATGGCAAATCTTACTCCCTGAAGTT
ACAGTGGAGCGGATTA
Found at i:14453323 original size:24 final size:24
Alignment explanation
Indices: 14453296--14453347 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
14453286 TTTTTAGAAG
* **
14453296 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAACATAATAT
*
14453320 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATGAACATAATAT
14453344 ATTT
1 ATTT
14453348 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:14455937 original size:39 final size:39
Alignment explanation
Indices: 14455886--14455961 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
14455876 TAAACATCCA
14455886 AAGAAGTATGTCGAGGCTGATCTAGTTGCTTATGCTTCC
1 AAGAAGTATGTCGAGGCTGATCTAGTTGCTTATGCTTCC
14455925 AAGAAGTATGTCGAGGCTGATCTAGTTGCTTATGCTT
1 AAGAAGTATGTCGAGGCTGATCTAGTTGCTTATGCTT
14455962 TAAATGTGGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (39 bp):
AAGAAGTATGTCGAGGCTGATCTAGTTGCTTATGCTTCC
Found at i:14460048 original size:14 final size:14
Alignment explanation
Indices: 14460027--14460062 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
14460017 AGGTGAACCA
14460027 ACCTCCTTAACACT
1 ACCTCCTTAACACT
* *
14460041 ATCTCCTTAAGACT
1 ACCTCCTTAACACT
14460055 ACCTCCTT
1 ACCTCCTT
14460063 TGTCAATACC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.25, C:0.39, G:0.03, T:0.33
Consensus pattern (14 bp):
ACCTCCTTAACACT
Found at i:14460402 original size:17 final size:17
Alignment explanation
Indices: 14460377--14460432 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 17
14460367 AAATATAATA
*
14460377 AATCATAATAGTGTTTC
1 AATCCTAATAGTGTTTC
14460394 AATCCTAATA--GTTT-
1 AATCCTAATAGTGTTTC
14460408 --T--TAATAGTGTTTC
1 AATCCTAATAGTGTTTC
14460421 AATCCTAATAGT
1 AATCCTAATAGT
14460433 TTTGTCACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 14
0.67 0.02 0.30
Matches are distributed among these distances:
10 5 0.16
12 5 0.16
15 5 0.16
17 16 0.52
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (17 bp):
AATCCTAATAGTGTTTC
Found at i:14460402 original size:27 final size:27
Alignment explanation
Indices: 14460372--14460430 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
14460362 ACTATAAATA
14460372 TAATAAATCATAATAGTGTTTCAATCC
1 TAATAAATCATAATAGTGTTTCAATCC
** **
14460399 TAATAGTTTTTAATAGTGTTTCAATCC
1 TAATAAATCATAATAGTGTTTCAATCC
14460426 TAATA
1 TAATA
14460431 GTTTTGTCAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.42
Consensus pattern (27 bp):
TAATAAATCATAATAGTGTTTCAATCC
Found at i:14460431 original size:27 final size:27
Alignment explanation
Indices: 14460382--14460435 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
14460372 TAATAAATCA
14460382 TAATAGTGTTTCAATCCTAATAGTTTT
1 TAATAGTGTTTCAATCCTAATAGTTTT
14460409 TAATAGTGTTTCAATCCTAATAGTTTT
1 TAATAGTGTTTCAATCCTAATAGTTTT
14460436 GTCACTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (27 bp):
TAATAGTGTTTCAATCCTAATAGTTTT
Found at i:14463112 original size:16 final size:17
Alignment explanation
Indices: 14463073--14463105 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14463063 AATAACCATT
*
14463073 CAATTTACAATTATATC
1 CAATTCACAATTATATC
14463090 CAATTCACAATT-TATC
1 CAATTCACAATTATATC
14463106 ATATTCAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (17 bp):
CAATTCACAATTATATC
Found at i:14468799 original size:24 final size:24
Alignment explanation
Indices: 14468753--14468799 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
14468743 GCTTGCATTA
* *
14468753 ACACACATTCTAATCCACTAAATC
1 ACACACATTCTAAACAACTAAATC
14468777 ACACATCATTCTAAACAAC-AAAT
1 ACACA-CATTCTAAACAACTAAAT
14468800 TCTTTCCACG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (24 bp):
ACACACATTCTAAACAACTAAATC
Found at i:14469990 original size:29 final size:29
Alignment explanation
Indices: 14469942--14469998 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
14469932 CACGCCCGTA
**
14469942 TGGCAACCCCACACTTCCGTTTGCATACC
1 TGGCAACCCCACACGCCCGTTTGCATACC
*
14469971 TGGCAACCCCATACGCCCGTTTGCATAC
1 TGGCAACCCCACACGCCCGTTTGCATAC
14469999 TCGTGTACTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.21, C:0.40, G:0.16, T:0.23
Consensus pattern (29 bp):
TGGCAACCCCACACGCCCGTTTGCATACC
Found at i:14472158 original size:16 final size:16
Alignment explanation
Indices: 14472132--14472185 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
14472122 CTGAACATAG
*
14472132 CTATTCTTAAACAATAG
1 CTATTC-TAAACAATAA
* * *
14472149 TTGTTCTAAATAATAA
1 CTATTCTAAACAATAA
*
14472165 CTATTCTAAACAACAA
1 CTATTCTAAACAATAA
14472181 CTATT
1 CTATT
14472186 GCTCTGGAAG
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
16 25 0.86
17 4 0.14
ACGTcount: A:0.43, C:0.17, G:0.04, T:0.37
Consensus pattern (16 bp):
CTATTCTAAACAATAA
Found at i:14472755 original size:29 final size:28
Alignment explanation
Indices: 14472720--14472784 Score: 121
Period size: 29 Copynumber: 2.3 Consensus size: 28
14472710 TTTTACATTT
14472720 GCAATGAGTTTAGCTCCTTTCTTAGTTG
1 GCAATGAGTTTAGCTCCTTTCTTAGTTG
14472748 GCAAATGAGTTTAGCTCCTTTCTTAGTTG
1 GC-AATGAGTTTAGCTCCTTTCTTAGTTG
14472777 GCAATGAG
1 GCAATGAG
14472785 CTTTTTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 8 0.22
29 28 0.78
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.38
Consensus pattern (28 bp):
GCAATGAGTTTAGCTCCTTTCTTAGTTG
Found at i:14477031 original size:11 final size:10
Alignment explanation
Indices: 14477007--14477031 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14476997 AAGTAGCATC
14477007 TTTTTCATAG
1 TTTTTCATAG
14477017 TTTTTCATAG
1 TTTTTCATAG
14477027 TTTTT
1 TTTTT
14477032 AGGTTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (10 bp):
TTTTTCATAG
Found at i:14477851 original size:22 final size:20
Alignment explanation
Indices: 14477815--14477873 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
14477805 GACCCGGCCC
14477815 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA--AAAA
14477837 ATTTATTTTAAAAATTAAAAA
1 ATTTATTTTAAAAA-TAAAAA
**
14477858 AAGTATTTTAAAAATA
1 ATTTATTTTAAAAATA
14477874 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 2 0.06
21 16 0.48
22 7 0.21
23 8 0.24
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTTATTTTAAAAATAAAAA
Found at i:14480888 original size:14 final size:15
Alignment explanation
Indices: 14480861--14480893 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14480851 TTGATACAAA
*
14480861 ATTTTTATTTTTTAT
1 ATTTTTATTATTTAT
14480876 ATTTTTA-TATTTAT
1 ATTTTTATTATTTAT
14480890 ATTT
1 ATTT
14480894 AAAATAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
ATTTTTATTATTTAT
Found at i:14487898 original size:29 final size:26
Alignment explanation
Indices: 14487853--14487919 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
14487843 AATCTTTAAT
*
14487853 AAAAATATA-AAAATATTTATATAATTA
1 AAAAATATATAAATTATTTA-A-AATTA
*
14487880 AAATATATAGTAAATTATTTAAAATTA
1 AAAAATATA-TAAATTATTTAAAATTA
14487907 AAAAATATATAAA
1 AAAAATATATAAA
14487920 CACAGTTATG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 4 0.11
27 21 0.60
28 1 0.03
29 9 0.26
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (26 bp):
AAAAATATATAAATTATTTAAAATTA
Found at i:14489215 original size:41 final size:41
Alignment explanation
Indices: 14489099--14489234 Score: 156
Period size: 41 Copynumber: 3.4 Consensus size: 41
14489089 ACCAGTTTGG
* * *
14489099 CACCTAGTGCCTCATCGAA-TAATTCGAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
* * * * *
14489139 CACCCAGTGTCTTATCG-GTTAAACCG-A--AGTAAATTGG
1 CACCCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
14489176 CACCCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
*
14489217 CACCCAGTGTCTCATCGA
1 CACCCAGTGCCTCATCGA
14489235 CTCGAAGTCG
Statistics
Matches: 77, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
37 23 0.30
38 7 0.09
39 2 0.03
40 19 0.25
41 26 0.34
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (41 bp):
CACCCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
Found at i:14493782 original size:28 final size:28
Alignment explanation
Indices: 14493738--14493791 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
14493728 TTATCAAAAC
*
14493738 GGCCTATTCCGTAATTTGTCAAAAAATT
1 GGCCTATTCCGTAATTTGTAAAAAAATT
* *
14493766 GGCCTATTTCTGT-ATTTTTAAAAAAA
1 GGCCTA-TTCCGTAATTTGTAAAAAAA
14493792 AGGCTTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 17 0.77
29 5 0.23
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (28 bp):
GGCCTATTCCGTAATTTGTAAAAAAATT
Found at i:14494047 original size:64 final size:64
Alignment explanation
Indices: 14493946--14494079 Score: 232
Period size: 64 Copynumber: 2.1 Consensus size: 64
14493936 AATGAAACTA
* *
14493946 GAGAAACAAGTGTCCAAATTTAAATGAATAATCTAGGTTCATTCTGGATTTATTTTTAATTTTT
1 GAGAAACAAGTGTCCAAATTTAAATCAACAATCTAGGTTCATTCTGGATTTATTTTTAATTTTT
*
14494010 GAGAAACAAGTGTTCAAATTTAAATCAACAATCTAGGTTCATTCTGGATTTATTTTTAATTTTT
1 GAGAAACAAGTGTCCAAATTTAAATCAACAATCTAGGTTCATTCTGGATTTATTTTTAATTTTT
*
14494074 AAGAAA
1 GAGAAA
14494080 TTTGAAAATT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (64 bp):
GAGAAACAAGTGTCCAAATTTAAATCAACAATCTAGGTTCATTCTGGATTTATTTTTAATTTTT
Found at i:14494733 original size:16 final size:16
Alignment explanation
Indices: 14494704--14494757 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
14494694 TTTGGTTCGC
*
14494704 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
* *
14494720 CGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
14494736 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
14494752 TGTAAT
1 TGTAAT
14494758 AGCAAATCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.31, C:0.02, G:0.35, T:0.31
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:14494802 original size:45 final size:44
Alignment explanation
Indices: 14494736--14494826 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
14494726 GGAATAGAGG
* *
14494736 TGTAATGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
14494781 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
14494825 TG
1 TG
14494827 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.31, C:0.05, G:0.29, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:14495012 original size:18 final size:17
Alignment explanation
Indices: 14494991--14495025 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14494981 TTATTATTAA
*
14494991 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14495009 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14495026 TCTTAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14511116 original size:28 final size:29
Alignment explanation
Indices: 14511060--14511122 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 29
14511050 TTAACTAAGA
*
14511060 GTTTGAACAGAAACATGTTGGCAAGCTGG
1 GTTTGAACAGAAACATATTGGCAAGCTGG
*
14511089 GTTTGAACAG-AACTTATTGGCAAGCTGG
1 GTTTGAACAGAAACATATTGGCAAGCTGG
14511117 GTTTGA
1 GTTTGA
14511123 TTAACATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 22 0.69
29 10 0.31
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.29
Consensus pattern (29 bp):
GTTTGAACAGAAACATATTGGCAAGCTGG
Found at i:14522008 original size:153 final size:153
Alignment explanation
Indices: 14521843--14522160 Score: 555
Period size: 153 Copynumber: 2.1 Consensus size: 153
14521833 CATAATCGAA
*
14521843 CATATATATATACTTAACAAATTTTATAACCGAATATACATATACACATCAAATGAATATAACCG
1 CATATATATATACTTAACAAATTTTATAACCGAATATACATATACACATCAAACGAATATAACCG
* * *
14521908 AATACATTTATACTTACCAAAATGCATATATAAGTTTCTCACATACATCTATCCAAATGCTAATA
66 AATACATTTATACTTACAAAAATGCATATATAAATTTCTCACATACATCTATCCAAATGCGAATA
*
14521973 TACCTAACAATTTCATAGAATTG
131 TACCTAACAATTTCATAAAATTG
*
14521996 CATATATATATACTTAACAAATTTTATAACCGAATATATATATACACATCAAACGAATATAACCG
1 CATATATATATACTTAACAAATTTTATAACCGAATATACATATACACATCAAACGAATATAACCG
*
14522061 AATACATTTATACTTACAAAAATGCATATATAAATTTCTCACATACATCTATCCGAATGCGAATA
66 AATACATTTATACTTACAAAAATGCATATATAAATTTCTCACATACATCTATCCAAATGCGAATA
*
14522126 TACTTAACAATTTCATAAAATTG
131 TACCTAACAATTTCATAAAATTG
*
14522149 AATATATATATA
1 CATATATATATA
14522161 TATAAATACA
Statistics
Matches: 156, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
153 156 1.00
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (153 bp):
CATATATATATACTTAACAAATTTTATAACCGAATATACATATACACATCAAACGAATATAACCG
AATACATTTATACTTACAAAAATGCATATATAAATTTCTCACATACATCTATCCAAATGCGAATA
TACCTAACAATTTCATAAAATTG
Found at i:14522405 original size:41 final size:41
Alignment explanation
Indices: 14522360--14522520 Score: 259
Period size: 41 Copynumber: 3.9 Consensus size: 41
14522350 ACTGGCACTT
* *
14522360 AGCCTGCTAGACATAAAGTCTAAAATGTTTCACCGGCGTCA
1 AGCCTGCTAGACTTAAAGTCTAAAATGTTTCACCGGCATCA
14522401 AGCCTGCTAGACTTAAAGTCTAAAATGTTTCACCGGCATCA
1 AGCCTGCTAGACTTAAAGTCTAAAATGTTTCACCGGCATCA
* *
14522442 AGCCTGCTAGACGTAAAGTCTGAAATGTTTCACCGGCATCA
1 AGCCTGCTAGACTTAAAGTCTAAAATGTTTCACCGGCATCA
* * *
14522483 AGCCTGTTAGACTTAAAGTCTGAAATGTTTCACTGGCA
1 AGCCTGCTAGACTTAAAGTCTAAAATGTTTCACCGGCA
14522521 ATAAACCTGA
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 113 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (41 bp):
AGCCTGCTAGACTTAAAGTCTAAAATGTTTCACCGGCATCA
Found at i:14530014 original size:19 final size:19
Alignment explanation
Indices: 14529990--14530043 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
14529980 AATCTTCAAG
14529990 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14530009 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14530028 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14530044 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14530019 original size:36 final size:36
Alignment explanation
Indices: 14529979--14530050 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 36
14529969 TATGGAAACA
14529979 TAATCTT-CA-AGGATATGCAATCTTAGATATGATATG
1 TAATCTTACATAGGATATGCAATCTTAGA-A-GATATG
* *
14530015 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTACATAGGATATGCAATCTTAGAAGATATG
14530051 ATTTTGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 13 0.41
37 2 0.06
38 17 0.53
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (36 bp):
TAATCTTACATAGGATATGCAATCTTAGAAGATATG
Found at i:14530034 original size:38 final size:40
Alignment explanation
Indices: 14529990--14530066 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
14529980 AATCTTCAAG
14529990 GATATGCAATCTT-AGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
*
14530028 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT--AAGATATGATTATGTAATCTTAGA
14530067 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
41 8 0.24
42 13 0.38
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
Found at i:14530292 original size:23 final size:23
Alignment explanation
Indices: 14530248--14530292 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
14530238 TCTTATTTTG
* *
14530248 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
14530271 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
14530293 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:14544889 original size:17 final size:19
Alignment explanation
Indices: 14544860--14544894 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14544850 ACCGGAGATT
14544860 AAATTTCAAAACA-ATAAA
1 AAATTTCAAAACATATAAA
14544878 AAATTT-AAAACATATAA
1 AAATTTCAAAACATATAA
14544895 TTCACAGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (19 bp):
AAATTTCAAAACATATAAA
Found at i:14546504 original size:24 final size:25
Alignment explanation
Indices: 14546477--14546524 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
14546467 TTCGTTAAAT
*
14546477 GCTCTTCG-GAGCTACTCATTATAG
1 GCTCTTCGTGAGCTACCCATTATAG
* *
14546501 GCTCTTTGTGAGCTTCCCATTATA
1 GCTCTTCGTGAGCTACCCATTATA
14546525 TTGCCCAGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.38
Consensus pattern (25 bp):
GCTCTTCGTGAGCTACCCATTATAG
Found at i:14548738 original size:15 final size:16
Alignment explanation
Indices: 14548709--14548738 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14548699 CAAACATGCT
14548709 TTAACACATTATCAAA
1 TTAACACATTATCAAA
14548725 TTAACACA-TATCAA
1 TTAACACATTATCAA
14548739 CAAGGCATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:14556040 original size:59 final size:59
Alignment explanation
Indices: 14555948--14556060 Score: 190
Period size: 59 Copynumber: 1.9 Consensus size: 59
14555938 TTCTATAATA
*
14555948 AAAATTAGATCCATGGCACTTGATAGTCATGAGAGTAAAATTAGGAGAAAAAAATTGAT
1 AAAATTAGATCCATGGCACTTGATAGTCATGAGAGTAAAATTAGGACAAAAAAATTGAT
** *
14556007 AAAATTAGATCCATGGCACTTGATAGTTGTGAGAGTACAATTAGGACAAAAAAA
1 AAAATTAGATCCATGGCACTTGATAGTCATGAGAGTAAAATTAGGACAAAAAAA
14556061 AAAAAAATAG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.45, C:0.10, G:0.20, T:0.25
Consensus pattern (59 bp):
AAAATTAGATCCATGGCACTTGATAGTCATGAGAGTAAAATTAGGACAAAAAAATTGAT
Found at i:14565168 original size:18 final size:18
Alignment explanation
Indices: 14565147--14565182 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
14565137 GTAAAAATAG
14565147 CGGCACCAAAATCAGTAT
1 CGGCACCAAAATCAGTAT
14565165 CGGCACCAAAATCAGTAT
1 CGGCACCAAAATCAGTAT
14565183 GTTATATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.17, T:0.17
Consensus pattern (18 bp):
CGGCACCAAAATCAGTAT
Found at i:14569369 original size:15 final size:15
Alignment explanation
Indices: 14569351--14569385 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
14569341 TGGTTTAAAT
14569351 TTATATATTATCATC
1 TTATATATTATCATC
*
14569366 TTATATATTATTATC
1 TTATATATTATCATC
14569381 -TATAT
1 TTATAT
14569386 TAAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATATATTATCATC
Found at i:14570374 original size:105 final size:105
Alignment explanation
Indices: 14570087--14570818 Score: 931
Period size: 105 Copynumber: 6.9 Consensus size: 105
14570077 AAGAAATGTT
*
14570087 TTTCTAAA-TAAGGCAATATTTCGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTT
1 TTTC-AAAGTAAGGCAATATTT-GCGTTTGGAAAATTGAGAGAACGTGCCCTAACGTGTTGGGTT
* * * *
14570151 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAAC
64 TCAATTGCTCGTTTGACCAAATAGCCAAATATCC-TTTTAAAA
* * *
14570194 TTTTAAAATAAGGCAATATTTTGCGTTTGGAAAATCGAG-GAAACGTGCCCTAACGTGTTGGGTT
1 TTTCAAAGTAAGGCAATA-TTTGCGTTTGGAAAATTGAGAG-AACGTGCCCTAACGTGTTGGGTT
*
14570258 TCGACTT-CTCGTTTGACCAAATAGCCAAATATCCTTTTAAAA
64 TC-AATTGCTCGTTTGACCAAATAGCCAAATATCCTTTTAAAA
* * * * *
14570300 TTTCAAAGTGAGGCAATATTTGCGTTTGGAAATTTGAGAGAACATGCCCTAACGTGCTGGGTCTC
1 TTTCAAAGTAAGGCAATATTTGCGTTTGGAAAATTGAGAGAACGTGCCCTAACGTGTTGGGTTTC
* * *
14570365 AATTGCTCGTTCGACAAAATAGCCAAATATCCTTTTTAAAC
66 AATTGCTCGTTTGACCAAATAGCCAAATATCC-TTTTAAAA
* * *
14570406 TTTTAAAATAAGGCAATATTTCGCGTTTGGAAAATCGAG-GAAACGTGCCCTAACGTGTTGGGTT
1 TTTCAAAGTAAGGCAATATTT-GCGTTTGGAAAATTGAGAG-AACGTGCCCTAACGTGTTGGGTT
*
14570470 TCGACTT-CTCGTTTGACCAAATAGCCAAATATCCTTTTAAAA
64 TC-AATTGCTCGTTTGACCAAATAGCCAAATATCCTTTTAAAA
* * * * *
14570512 TTTCAAAGTGAGGCAATATTTGCGTTTGGAAATTTGAGAGAATGTGCCCTAACGTGCTGGGTCTC
1 TTTCAAAGTAAGGCAATATTTGCGTTTGGAAAATTGAGAGAACGTGCCCTAACGTGTTGGGTTTC
* * *
14570577 AATTGCTCGTTCGACCAAATAGCCAAATATCATTTTTAAAC
66 AATTGCTCGTTTGACCAAATAGCCAAATATC-CTTTTAAAA
* * *
14570618 TTTTAAA-TAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGTTGGGTTT
1 TTTCAAAGTAAGGCAATATTT-GCGTTTGGAAAATTGAGAGAACGTGCCCTAACGTGTTGGGTTT
* * *
14570682 CGA-CGTCTCGTTTGACTAAATAGCCAAATATCCTTTTAAAA
65 CAATTG-CTCGTTTGACCAAATAGCCAAATATCCTTTTAAAA
* * * *
14570723 TTTCAAAGTGAA-GCAATATTTGCGTTTGGAAATTTGAGAGAACGTGCCATAACGTGCTGGGTCT
1 TTTCAAAGT-AAGGCAATATTTGCGTTTGGAAAATTGAGAGAACGTGCCCTAACGTGTTGGGTTT
14570787 CAATTGCTCGTTTGACCAAATAGCCAAATATC
65 CAATTGCTCGTTTGACCAAATAGCCAAATATC
14570819 TTCTTAACTT
Statistics
Matches: 540, Mismatches: 67, Indels: 38
0.84 0.10 0.06
Matches are distributed among these distances:
104 6 0.01
105 217 0.40
106 165 0.31
107 144 0.27
108 8 0.01
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (105 bp):
TTTCAAAGTAAGGCAATATTTGCGTTTGGAAAATTGAGAGAACGTGCCCTAACGTGTTGGGTTTC
AATTGCTCGTTTGACCAAATAGCCAAATATCCTTTTAAAA
Found at i:14570778 original size:211 final size:212
Alignment explanation
Indices: 14570097--14570818 Score: 1275
Period size: 212 Copynumber: 3.4 Consensus size: 212
14570087 TTTCTAAATA
* * * * * *
14570097 AGGCAATATTTCGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCG
1 AGGCAATATTT-GCGTTTGGAAATTTGAGAGAACGTGCCCTAACGTGCTGGGTCTCAATTGCTCG
*
14570162 TTCGACCAAATAGCCAAATATCCTTTTTAAACTTTTAAAATAAGGCAATATTTTGCGTTTGGAAA
65 TTCGACCAAATAGCCAAATATCCTTTTTAAACTTTTAAAATAAGGCAATATTTCGCGTTTGGAAA
14570227 ATCGAGGAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGTTTGACCAAATAGCCAAATATCC
130 ATCGAGGAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGTTTGACCAAATAGCCAAATATCC
14570292 TTTTAAAATTTCAAAGTG
195 TTTTAAAATTTCAAAGTG
*
14570310 AGGCAATATTTGCGTTTGGAAATTTGAGAGAACATGCCCTAACGTGCTGGGTCTCAATTGCTCGT
1 AGGCAATATTTGCGTTTGGAAATTTGAGAGAACGTGCCCTAACGTGCTGGGTCTCAATTGCTCGT
*
14570375 TCGACAAAATAGCCAAATATCCTTTTTAAACTTTTAAAATAAGGCAATATTTCGCGTTTGGAAAA
66 TCGACCAAATAGCCAAATATCCTTTTTAAACTTTTAAAATAAGGCAATATTTCGCGTTTGGAAAA
14570440 TCGAGGAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGTTTGACCAAATAGCCAAATATCCT
131 TCGAGGAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGTTTGACCAAATAGCCAAATATCCT
14570505 TTTAAAATTTCAAAGTG
196 TTTAAAATTTCAAAGTG
*
14570522 AGGCAATATTTGCGTTTGGAAATTTGAGAGAATGTGCCCTAACGTGCTGGGTCTCAATTGCTCGT
1 AGGCAATATTTGCGTTTGGAAATTTGAGAGAACGTGCCCTAACGTGCTGGGTCTCAATTGCTCGT
*
14570587 TCGACCAAATAGCCAAATATCATTTTTAAACTTTT-AAATAAGGCAATATTTCGCGTTTGGAAAA
66 TCGACCAAATAGCCAAATATCCTTTTTAAACTTTTAAAATAAGGCAATATTTCGCGTTTGGAAAA
* * *
14570651 TCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACGTCTCGTTTGACTAAATAGCCAAATATCCT
131 TCGAGGAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGTTTGACCAAATAGCCAAATATCCT
14570716 TTTAAAATTTCAAAGTG
196 TTTAAAATTTCAAAGTG
* *
14570733 AAGCAATATTTGCGTTTGGAAATTTGAGAGAACGTGCCATAACGTGCTGGGTCTCAATTGCTCGT
1 AGGCAATATTTGCGTTTGGAAATTTGAGAGAACGTGCCCTAACGTGCTGGGTCTCAATTGCTCGT
*
14570798 TTGACCAAATAGCCAAATATC
66 TCGACCAAATAGCCAAATATC
14570819 TTCTTAACTT
Statistics
Matches: 489, Mismatches: 20, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
211 190 0.39
212 288 0.59
213 11 0.02
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (212 bp):
AGGCAATATTTGCGTTTGGAAATTTGAGAGAACGTGCCCTAACGTGCTGGGTCTCAATTGCTCGT
TCGACCAAATAGCCAAATATCCTTTTTAAACTTTTAAAATAAGGCAATATTTCGCGTTTGGAAAA
TCGAGGAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGTTTGACCAAATAGCCAAATATCCT
TTTAAAATTTCAAAGTG
Found at i:14577181 original size:18 final size:18
Alignment explanation
Indices: 14577160--14577194 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14577150 CAGAATTCAG
*
14577160 CTCTTTTTCATTCTTTTT
1 CTCTCTTTCATTCTTTTT
*
14577178 CTCTCTTTCCTTCTTTT
1 CTCTCTTTCATTCTTTT
14577195 AGGAAGACAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.69
Consensus pattern (18 bp):
CTCTCTTTCATTCTTTTT
Found at i:14580894 original size:17 final size:16
Alignment explanation
Indices: 14580868--14580906 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
14580858 ATTTTTTATT
14580868 TTAATTGATATA-ATTA
1 TTAATTGATA-ACATTA
14580884 TTAAGTTGATAACATTA
1 TTAA-TTGATAACATTA
14580901 TTAATT
1 TTAATT
14580907 TTAAAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.49
Consensus pattern (16 bp):
TTAATTGATAACATTA
Found at i:14586740 original size:19 final size:20
Alignment explanation
Indices: 14586694--14586741 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
14586684 CTCATAATAG
14586694 GTATCGATATCTATTTACAA
1 GTATCGATATCTATTTACAA
* *
14586714 GGATCGATA-CT-TTTTCAGA
1 GTATCGATATCTATTTACA-A
14586733 GTATCGATA
1 GTATCGATA
14586742 AAAAGGCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 5 0.21
19 11 0.46
20 8 0.33
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.38
Consensus pattern (20 bp):
GTATCGATATCTATTTACAA
Done.