Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 44 of 79
Found at i:14587292 original size:12 final size:12
Alignment explanation
Indices: 14587275--14587306 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
14587265 AGCGGTGAAT
14587275 GGAGGAATGGGC
1 GGAGGAATGGGC
*
14587287 GGAGGAATGGGT
1 GGAGGAATGGGC
14587299 GGAGGAAT
1 GGAGGAAT
14587307 AGGGAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.28, C:0.03, G:0.56, T:0.12
Consensus pattern (12 bp):
GGAGGAATGGGC
Found at i:14588222 original size:42 final size:42
Alignment explanation
Indices: 14588163--14588247 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
14588153 ATCATAATTG
14588163 GATAATCCGCGATTCATGAAGGATGTCAAAAGTGAAAGTAGA
1 GATAATCCGCGATTCATGAAGGATGTCAAAAGTGAAAGTAGA
14588205 GATAATCCGCGATTCATGAAGGATGTCAAAAGTGAAAGTAGA
1 GATAATCCGCGATTCATGAAGGATGTCAAAAGTGAAAGTAGA
14588247 G
1 G
14588248 TCCGTGGAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.21
Consensus pattern (42 bp):
GATAATCCGCGATTCATGAAGGATGTCAAAAGTGAAAGTAGA
Found at i:14595514 original size:21 final size:21
Alignment explanation
Indices: 14595490--14595550 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 21
14595480 TACCATATGT
14595490 GAACCCTGTTTTACTACATGC
1 GAACCCTGTTTTACTACATGC
*
14595511 GAACCCTGTTATACTAATACATGC
1 GAACCCTGTT-T--TACTACATGC
* *
14595535 GGACCCTGTTATACTA
1 GAACCCTGTTTTACTA
14595551 TGTGCGAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 14 0.42
22 1 0.03
24 18 0.55
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (21 bp):
GAACCCTGTTTTACTACATGC
Found at i:14595540 original size:24 final size:24
Alignment explanation
Indices: 14595504--14595550 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
14595494 CCTGTTTTAC
14595504 TACATGCGAACCCTGTTATACTAA
1 TACATGCGAACCCTGTTATACTAA
*
14595528 TACATGCGGACCCTGTTATACTA
1 TACATGCGAACCCTGTTATACTA
14595551 TGTGCGAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (24 bp):
TACATGCGAACCCTGTTATACTAA
Found at i:14595565 original size:17 final size:17
Alignment explanation
Indices: 14595543--14595575 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14595533 GCGGACCCTG
*
14595543 TTATACTATGTGCGAAT
1 TTATACCATGTGCGAAT
14595560 TTATACCATGTGCGAA
1 TTATACCATGTGCGAA
14595576 CCTATGTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.36
Consensus pattern (17 bp):
TTATACCATGTGCGAAT
Found at i:14597006 original size:27 final size:26
Alignment explanation
Indices: 14596933--14597008 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 26
14596923 ACTGCACGAT
*
14596933 AAGTTGCGAACTAGTGGTTCACAGGGC
1 AAGTTGCG-ACTAGGGGTTCACAGGGC
* * * *
14596960 AAGTTGCGAATTGGGTGTTCGCAGGGT
1 AAGTTGCGACTAGGG-GTTCACAGGGC
*
14596987 AGGTTGCGAGCTAGGGGTTCAC
1 AAGTTGCGA-CTAGGGGTTCAC
14597009 CGAGTCATCT
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
26 4 0.11
27 30 0.79
28 4 0.11
ACGTcount: A:0.21, C:0.16, G:0.38, T:0.25
Consensus pattern (26 bp):
AAGTTGCGACTAGGGGTTCACAGGGC
Found at i:14598009 original size:49 final size:49
Alignment explanation
Indices: 14597956--14598060 Score: 120
Period size: 49 Copynumber: 2.1 Consensus size: 49
14597946 TAGAGTCATA
* *
14597956 GGTTCAACTATAACTAGGGCTCCCAGTTGATAGTGATTATGCAATCACG
1 GGTTCAACTATAACTAGAGCTCCCAGTTGACAGTGATTATGCAATCACG
* * ** * ***
14598005 GGTTCAAGTATAACTTGAGCTCTTAGTTGACAGTGGTTATGTGGTCACG
1 GGTTCAACTATAACTAGAGCTCCCAGTTGACAGTGATTATGCAATCACG
14598054 GGTTCAA
1 GGTTCAA
14598061 GTTTCATGCC
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
GGTTCAACTATAACTAGAGCTCCCAGTTGACAGTGATTATGCAATCACG
Found at i:14598739 original size:5 final size:5
Alignment explanation
Indices: 14598729--14598764 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
14598719 TTCTCAAAAT
*
14598729 ATATG ATATG ATATG ATATG ATATG CATATC ATATG
1 ATATG ATATG ATATG ATATG ATATG -ATATG ATATG
14598765 TTTATATGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 24 0.86
6 4 0.14
ACGTcount: A:0.39, C:0.06, G:0.17, T:0.39
Consensus pattern (5 bp):
ATATG
Found at i:14617000 original size:25 final size:25
Alignment explanation
Indices: 14616959--14617007 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
14616949 GCACATATAA
*
14616959 CAAACACACAAGCAAAAAAAAAAAC
1 CAAACACAAAAGCAAAAAAAAAAAC
*
14616984 CAAACACAAAAAG-AAAAATAAAAA
1 CAAACAC-AAAAGCAAAAAAAAAAA
14617008 TAACAAGAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.76, C:0.18, G:0.04, T:0.02
Consensus pattern (25 bp):
CAAACACAAAAGCAAAAAAAAAAAC
Found at i:14646650 original size:25 final size:25
Alignment explanation
Indices: 14646599--14646651 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
14646589 TTTATTTCTC
* *
14646599 AAAAATATTTTTTTAATAAAATTTT
1 AAAAATATTTTTTGAATAAAATATT
*
14646624 AAAAATATTTTTTGACA-ATAATATT
1 AAAAATATTTTTTGA-ATAAAATATT
14646649 AAA
1 AAA
14646652 TACTTAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (25 bp):
AAAAATATTTTTTGAATAAAATATT
Found at i:14646745 original size:16 final size:16
Alignment explanation
Indices: 14646724--14646761 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
14646714 TTTGGTTCGC
*
14646724 TGTAATGGAATAGAGG
1 TGTAATGGAATAAAGG
14646740 TGTAATGGAATAAAGG
1 TGTAATGGAATAAAGG
*
14646756 CGTAAT
1 TGTAAT
14646762 AGTAATTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.03, G:0.32, T:0.26
Consensus pattern (16 bp):
TGTAATGGAATAAAGG
Found at i:14646819 original size:24 final size:24
Alignment explanation
Indices: 14646787--14646832 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
14646777 TGGTTGAATG
14646787 GAATGGAATAGA-GCTGTAATAGTT
1 GAATGGAAT-GATGCTGTAATAGTT
*
14646811 GAATGGAATGATGTTGTAATAG
1 GAATGGAATGATGCTGTAATAG
14646833 CATAAGGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.37, C:0.02, G:0.30, T:0.30
Consensus pattern (24 bp):
GAATGGAATGATGCTGTAATAGTT
Found at i:14649649 original size:50 final size:50
Alignment explanation
Indices: 14649515--14649710 Score: 176
Period size: 50 Copynumber: 3.8 Consensus size: 50
14649505 ATTTGGGTAA
* * *
14649515 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
** * *
14649571 AGAGGTCCCATATAAGACTATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
14649621 AGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATAGGCACCGATATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * * *
14649671 AGAACTCTCATGTAAGACCATATCTAGGATATGGCATTGG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGG
14649711 TAGTACAAGA
Statistics
Matches: 117, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
50 75 0.64
53 3 0.03
55 1 0.01
56 38 0.32
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:14652954 original size:25 final size:25
Alignment explanation
Indices: 14652922--14652969 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
14652912 TTTTAATTCA
14652922 AAAACGTGCTATTAAAAGCAGACTC
1 AAAACGTGCTATTAAAAGCAGACTC
* *
14652947 AAAACGTGCTATTAGAAGTAGAC
1 AAAACGTGCTATTAAAAGCAGAC
14652970 AATATGATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.21
Consensus pattern (25 bp):
AAAACGTGCTATTAAAAGCAGACTC
Found at i:14656795 original size:30 final size:30
Alignment explanation
Indices: 14656737--14656804 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
14656727 ATAATTATAC
*
14656737 CTAAATT-TTAAAATTTAAAAAGTAAAAGAA
1 CTAAATTCTTAAAATATAAAAAGTAAAAG-A
14656767 CTAAATTCTTAAAA-ATAAAAATGT-AAAGA
1 CTAAATTCTTAAAATATAAAAA-GTAAAAGA
*
14656796 TTAAATTCT
1 CTAAATTCT
14656805 AAGTTTATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 9 0.26
30 17 0.50
31 8 0.24
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (30 bp):
CTAAATTCTTAAAATATAAAAAGTAAAAGA
Found at i:14661858 original size:16 final size:16
Alignment explanation
Indices: 14661834--14661871 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
14661824 TTTGGTTCGC
* *
14661834 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
14661850 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
14661866 TGTAAT
1 TGTAAT
14661872 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:14661955 original size:39 final size:43
Alignment explanation
Indices: 14661850--14661959 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
14661840 GGATTAGAGG
14661850 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
14661895 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
14661935 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
14661960 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:14663487 original size:20 final size:20
Alignment explanation
Indices: 14663464--14663502 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
14663454 CATTGAGATT
14663464 TCGAAACATCTTGCATCAGG
1 TCGAAACATCTTGCATCAGG
14663484 TCGAAACATCTTGCATCAG
1 TCGAAACATCTTGCATCAG
14663503 AACCGAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (20 bp):
TCGAAACATCTTGCATCAGG
Found at i:14669772 original size:20 final size:20
Alignment explanation
Indices: 14669721--14669777 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
14669711 CTTTATTTTA
*
14669721 ATTAATTTATTCATTTTTTATT
1 ATTAATTTAAT-A-TTTTTATT
*
14669743 -TTATTTTTAATATTTTTATT
1 ATTA-ATTTAATATTTTTATT
14669763 ATTAATTTAAT-TTTT
1 ATTAATTTAATATTTT
14669778 ACATTCTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
19 4 0.13
20 14 0.47
21 7 0.23
22 5 0.17
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (20 bp):
ATTAATTTAATATTTTTATT
Found at i:14684361 original size:18 final size:18
Alignment explanation
Indices: 14684335--14684377 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14684325 CTAAAAAAAT
*
14684335 AAGAAAATGACCAAACTG
1 AAGAAAATGAACAAACTG
* *
14684353 AATAAAATGAATAAACTG
1 AAGAAAATGAACAAACTG
14684371 AAGAAAA
1 AAGAAAA
14684378 ACATGGCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.63, C:0.09, G:0.14, T:0.14
Consensus pattern (18 bp):
AAGAAAATGAACAAACTG
Found at i:14684633 original size:22 final size:24
Alignment explanation
Indices: 14684597--14684642 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
14684587 CAACCAATCA
*
14684597 AATTTCAACACA-TTTCT-TCCTT
1 AATTTCAACAAATTTTCTCTCCTT
*
14684619 AATTTCCACAAATTTTCTCTCCTT
1 AATTTCAACAAATTTTCTCTCCTT
14684643 TACACCTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 5 0.25
24 5 0.25
ACGTcount: A:0.26, C:0.28, G:0.00, T:0.46
Consensus pattern (24 bp):
AATTTCAACAAATTTTCTCTCCTT
Found at i:14685833 original size:8 final size:8
Alignment explanation
Indices: 14685820--14685853 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
14685810 CTTAACATGC
14685820 TTTCAGTT
1 TTTCAGTT
14685828 TTTCAGTT
1 TTTCAGTT
14685836 TTTCAGTT
1 TTTCAGTT
14685844 TTTCAGTT
1 TTTCAGTT
14685852 TT
1 TT
14685854 AGTGGTATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.12, C:0.12, G:0.12, T:0.65
Consensus pattern (8 bp):
TTTCAGTT
Found at i:14688887 original size:2 final size:2
Alignment explanation
Indices: 14688882--14688907 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14688872 TATATATATA
14688882 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
14688908 AATTGAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:14689638 original size:30 final size:30
Alignment explanation
Indices: 14689602--14689663 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
14689592 TAATGCTTAC
14689602 TCAGTTTATTTCTTCGTGTTTTATAGAGGT
1 TCAGTTTATTTCTTCGTGTTTTATAGAGGT
14689632 TCAGTTTATTTCTTCGTGTTTTATAGAGGT
1 TCAGTTTATTTCTTCGTGTTTTATAGAGGT
14689662 TC
1 TC
14689664 GTTAGCTAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.16, C:0.11, G:0.19, T:0.53
Consensus pattern (30 bp):
TCAGTTTATTTCTTCGTGTTTTATAGAGGT
Found at i:14691675 original size:46 final size:46
Alignment explanation
Indices: 14691608--14691701 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
14691598 AGAATATTTA
14691608 ACTTCCAAATGAAACTATTATTTAGATTAAATACTAACATTCAAAC
1 ACTTCCAAATGAAACTATTATTTAGATTAAATACTAACATTCAAAC
14691654 ACTTCCAAATGAAACTATTATTTAGATTAAATACTAACATTCAAAC
1 ACTTCCAAATGAAACTATTATTTAGATTAAATACTAACATTCAAAC
14691700 AC
1 AC
14691702 ACATTACATT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.46, C:0.18, G:0.04, T:0.32
Consensus pattern (46 bp):
ACTTCCAAATGAAACTATTATTTAGATTAAATACTAACATTCAAAC
Found at i:14696055 original size:15 final size:15
Alignment explanation
Indices: 14696035--14696065 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14696025 GAATCAAACG
14696035 AATCTCATTGAATTA
1 AATCTCATTGAATTA
14696050 AATCTCATTGAATTA
1 AATCTCATTGAATTA
14696065 A
1 A
14696066 TACAATTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (15 bp):
AATCTCATTGAATTA
Found at i:14696409 original size:14 final size:14
Alignment explanation
Indices: 14696390--14696417 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14696380 ATTTATTTCT
14696390 TGGTTGCCGAATTG
1 TGGTTGCCGAATTG
14696404 TGGTTGCCGAATTG
1 TGGTTGCCGAATTG
14696418 GGCCTCTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.36, T:0.36
Consensus pattern (14 bp):
TGGTTGCCGAATTG
Found at i:14702139 original size:131 final size:131
Alignment explanation
Indices: 14701897--14702158 Score: 309
Period size: 131 Copynumber: 2.0 Consensus size: 131
14701887 TTTGTCCTCC
* * *
14701897 ATAAAACCTTAACTAGAGGAATCATTTTCTTTGTCAAAACTTTTACCTCATGATCCAAAATCTAA
1 ATAAAACCTTAACTAGAGGAATCATTTTCTTTCTCAAAAATTTTACCTCATGATCAAAAATCTAA
* * * *
14701962 ACTGACTCCTCCTCAAAAGACAAATTCTGATTTACATCGATCTCCTCAATCAAAACCACATAAGA
66 ACTGACTCCTCCTCAAAAGACAAATTCTAACTCACATCAATCTCCTCAATCAAAACCACATAAGA
14702027 T
131 T
14702028 ATAAAACCTTAACTAGAGGAATC-TTCTTCTTTCT-AAACAATTTTACCTCAT-ATTCAAAAATC
1 ATAAAACCTTAACTAGAGGAATCATT-TTCTTTCTCAAA-AATTTTACCTCATGA-TCAAAAATC
* ** * * **
14702090 TGAACTGGTTCCTCCTCAAAAGATAAATTC-AACCTCACCA-CAATTTCCTCAATCGGAACCACA
63 TAAACTGACTCCTCCTCAAAAGACAAATTCTAA-CTCA-CATCAATCTCCTCAATCAAAACCACA
*
14702153 TGAGAT
126 TAAGAT
14702159 GGACCAGATC
Statistics
Matches: 111, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
130 7 0.06
131 102 0.92
132 2 0.02
ACGTcount: A:0.37, C:0.25, G:0.08, T:0.30
Consensus pattern (131 bp):
ATAAAACCTTAACTAGAGGAATCATTTTCTTTCTCAAAAATTTTACCTCATGATCAAAAATCTAA
ACTGACTCCTCCTCAAAAGACAAATTCTAACTCACATCAATCTCCTCAATCAAAACCACATAAGA
T
Found at i:14708214 original size:43 final size:44
Alignment explanation
Indices: 14708103--14708215 Score: 117
Period size: 44 Copynumber: 2.6 Consensus size: 44
14708093 TGTTATCGTG
* ** *
14708103 TAAGACCACATCTGGGACGTTGGCATCGACTTGTGACTTACGTG
1 TAAGACCACGTCTGGGACGTTGGCATCGACTTGTGACTTAAATA
* *
14708147 TAAGACC-CTGTTTGGGATAG-TGGCATCGA-TATGTGA-TTAAATA
1 TAAGACCAC-GTCTGGGA-CGTTGGCATCGACT-TGTGACTTAAATA
14708190 TAAGACCACGTCTGGGACGTTGGCAT
1 TAAGACCACGTCTGGGACGTTGGCAT
14708216 TGTACAAAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 11
0.75 0.11 0.15
Matches are distributed among these distances:
42 1 0.02
43 26 0.46
44 28 0.50
45 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (44 bp):
TAAGACCACGTCTGGGACGTTGGCATCGACTTGTGACTTAAATA
Found at i:14711809 original size:30 final size:30
Alignment explanation
Indices: 14711739--14711820 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
14711729 AGTAACCTTG
* * *
14711739 ATATAATGTTAGA-TTGTGTGAGCAATTATG
1 ATATAATGTCA-ACTTGTGTGAGCAATCATA
* *
14711769 TTATAATGTCAACTTGTGTGAGCAATCCTA
1 ATATAATGTCAACTTGTGTGAGCAATCATA
* *
14711799 ATATATTGTCATCTTGTGTGAG
1 ATATAATGTCAACTTGTGTGAG
14711821 AAACTTATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 1 0.02
30 42 0.98
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (30 bp):
ATATAATGTCAACTTGTGTGAGCAATCATA
Found at i:14722229 original size:3 final size:3
Alignment explanation
Indices: 14722221--14722258 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
14722211 NNNNNNNNNN
14722221 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
14722259 TATTAATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:14722367 original size:31 final size:34
Alignment explanation
Indices: 14722331--14722401 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 34
14722321 ATATTCTAAA
* *
14722331 CGGGCCTATTTTTTTGCCC-AA-G-CTCATATTT
1 CGGGCCTATATTTTTACCCAAACGTCTCATATTT
14722362 CGGGCCTATATTTTTACCCAAACCGTCTCATATTT
1 CGGGCCTATATTTTTACCCAAA-CGTCTCATATTT
14722397 CGGGC
1 CGGGC
14722402 AGGCCGTCGG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 17 0.50
32 2 0.06
34 1 0.03
35 14 0.41
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.37
Consensus pattern (34 bp):
CGGGCCTATATTTTTACCCAAACGTCTCATATTT
Found at i:14725230 original size:20 final size:20
Alignment explanation
Indices: 14725205--14725244 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14725195 ACTAAATTTT
14725205 TTTAAAAT-AAAAATATAAAA
1 TTTAAAATCAAAAATA-AAAA
*
14725225 TTTAAATTCAAAAATAAAAA
1 TTTAAAATCAAAAATAAAAA
14725245 AATATAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (20 bp):
TTTAAAATCAAAAATAAAAA
Found at i:14725470 original size:20 final size:20
Alignment explanation
Indices: 14725437--14725477 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
14725427 AAAATAATAC
*
14725437 ATAAAAATTGAAAATT-TTT
1 ATAAAAATTAAAAATTATTT
14725456 ATAAAAATTAAAAAATTATTT
1 ATAAAAATT-AAAAATTATTT
14725477 A
1 A
14725478 AATTTCAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
20 6 0.32
21 4 0.21
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
ATAAAAATTAAAAATTATTT
Found at i:14731257 original size:13 final size:13
Alignment explanation
Indices: 14731239--14731263 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14731229 CCAGGCAGTG
14731239 TGAGACACACGGC
1 TGAGACACACGGC
14731252 TGAGACACACGG
1 TGAGACACACGG
14731264 TCGTGTATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.32, T:0.08
Consensus pattern (13 bp):
TGAGACACACGGC
Found at i:14732490 original size:235 final size:235
Alignment explanation
Indices: 14732064--14732531 Score: 828
Period size: 235 Copynumber: 2.0 Consensus size: 235
14732054 CGAACATCCG
* *
14732064 ATAATTTGTAAAGTCAAGGAAAATAACTACGTAAGCAATGAATGCTTAGTGAGCTCGTATAAACT
1 ATAATCTGTAAAGTAAAGGAAAATAACTACGTAAGCAATGAATGCTTAGTGAGCTCGTATAAACT
* *
14732129 ATAAACATAACATTTCATTTTAATAATGAAACTTTATGGGCTAATTATAAACTTATACTAATGCC
66 ATAAACATAACATTTCATTTTAATAATGAAACTTTATGGGCTAATTATAAACCTATACCAATGCC
* * *
14732194 ATGGGATTAATATATAGGAATGCATCTAAAACACACATATACCTAAACTTATACATATTTGACCA
131 ATAGGATTAATATATAAGAATGCATCTAAAACACACATATACCTAAACTTAAACATATTTGACCA
14732259 TAAGTCATCCATATATATATAAACATAACATTTAATTCTA
196 TAAGTCATCCATATATATATAAACATAACATTTAATTCTA
*
14732299 ATAATCTGTTAAGTAAAGGAAAATAACTACGTAAGCAATGAATGCTTAGTGAGCTCGTATAAACT
1 ATAATCTGTAAAGTAAAGGAAAATAACTACGTAAGCAATGAATGCTTAGTGAGCTCGTATAAACT
* *
14732364 TTAAACATAACATTTCATTTTAATAATGAAACTTTATGGGGTAATTATAAACCTATACCAATGCC
66 ATAAACATAACATTTCATTTTAATAATGAAACTTTATGGGCTAATTATAAACCTATACCAATGCC
* *
14732429 ATAGGATTAATATATAAGAGTGCATCTAAAACACATATATACCTAAACTTAAACATATTTGACCA
131 ATAGGATTAATATATAAGAATGCATCTAAAACACACATATACCTAAACTTAAACATATTTGACCA
14732494 TAAGTCATCCATATATATATAAACATAACATTTAATTC
196 TAAGTCATCCATATATATATAAACATAACATTTAATTC
14732532 ATCATTGTTA
Statistics
Matches: 221, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
235 221 1.00
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.32
Consensus pattern (235 bp):
ATAATCTGTAAAGTAAAGGAAAATAACTACGTAAGCAATGAATGCTTAGTGAGCTCGTATAAACT
ATAAACATAACATTTCATTTTAATAATGAAACTTTATGGGCTAATTATAAACCTATACCAATGCC
ATAGGATTAATATATAAGAATGCATCTAAAACACACATATACCTAAACTTAAACATATTTGACCA
TAAGTCATCCATATATATATAAACATAACATTTAATTCTA
Found at i:14734630 original size:12 final size:12
Alignment explanation
Indices: 14734613--14734640 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14734603 TTTAAATTCA
14734613 AACTCATATCAG
1 AACTCATATCAG
14734625 AACTCATATCAG
1 AACTCATATCAG
14734637 AACT
1 AACT
14734641 TGATGCTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.25, G:0.07, T:0.25
Consensus pattern (12 bp):
AACTCATATCAG
Found at i:14738629 original size:35 final size:35
Alignment explanation
Indices: 14738573--14738683 Score: 150
Period size: 35 Copynumber: 3.1 Consensus size: 35
14738563 AAACCACCCA
* *
14738573 AACACACCAGATGCTCATAAGAGCCAATCCAACTGT
1 AACACACCA-ATGCTCATAAGAGCTAATCCAACCGT
** *
14738609 AACATGCCAATGCTCATAAGAGTTAATCCAACCGT
1 AACACACCAATGCTCATAAGAGCTAATCCAACCGT
* *
14738644 AACACATCAATGCTCATAAGAGCTAATCCAACCGA
1 AACACACCAATGCTCATAAGAGCTAATCCAACCGT
14738679 AACAC
1 AACAC
14738684 GTCAAACATA
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
35 58 0.89
36 7 0.11
ACGTcount: A:0.41, C:0.29, G:0.13, T:0.18
Consensus pattern (35 bp):
AACACACCAATGCTCATAAGAGCTAATCCAACCGT
Found at i:14741055 original size:21 final size:19
Alignment explanation
Indices: 14741031--14741076 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
14741021 TTTGTTGGAT
14741031 TGTTTCGAACATTTTAGGGAC
1 TGTTT-GAA-ATTTTAGGGAC
* *
14741052 TGTTTTAAATTTTTGGGAC
1 TGTTTGAAATTTTAGGGAC
14741071 TGTTTG
1 TGTTTG
14741077 GTTTTGAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 15 0.68
20 2 0.09
21 5 0.23
ACGTcount: A:0.20, C:0.09, G:0.24, T:0.48
Consensus pattern (19 bp):
TGTTTGAAATTTTAGGGAC
Found at i:14744685 original size:23 final size:23
Alignment explanation
Indices: 14744641--14744685 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
14744631 TCTTATTTTG
* *
14744641 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
14744664 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
14744686 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:14747042 original size:404 final size:403
Alignment explanation
Indices: 14746293--14747431 Score: 2098
Period size: 404 Copynumber: 2.8 Consensus size: 403
14746283 NNNNNNNNNN
14746293 TCTTTGCATTATACATTGCATGAGTTGAATGATTTTACCCCTCTAAGTGGGAGTGAAAAACTAGT
1 TCTTTGCATTATACATTGCATGAGTTGAATGATTTTACCCCTCTAAGTGGGAGTGAAAAACTAGT
14746358 CCTTCGTGAGGTTTTCACCTCCGTGTAGGATAGTGGATCGCCTTCGGGATACATCCGTACCTATG
66 CCTTCGTGAGGTTTTCACCTCCGTGTAGGATAGTGGATCGCCTTCGGGATACATCCGTACCTATG
14746423 TCTTCGTGAGATTTTCATCTCTGTGTAGCCATAGAGAAATGTATCCCCCTGAACTGAACTCGGTC
131 TCTTCGTGAGATTTTCATCTCTGTGTAGCCATAGAGAAATGTATCCCCCTGAACTGAACTCGGTC
*
14746488 TATATGAGCCTATAATGGGTGAGGATCGAGGAATCTGCTGGTTTAGGTACCCTTACTTTAGAACC
196 TATATGAGCCTATAATGGGTGAGGATCGAGGAATCTGCTGGTTTAGGTACCCTTACTTCAGAACC
*
14746553 GAACCGCATATAGAAGACCTTAGGAGCTCACCCTAGGTAGAGCCACTTCAAACCCCTAATGGTCA
261 GAA-CGCATATAGAAGACCTTAGGAGCTCACCCTAGGTAGAGCCACTTCAAACCCCTAGTGGTCA
14746618 CCCGAATTTCTGTCTTAGGTCGAAAATTTTTAAAAATTCATGAGATCCTTTTGCATTCATTATTT
325 CCCGAATTTCTGTCTTAGGTCGAAAATTTTTAAAAATTCATGAGATCCTTTTGCATTCATTATTT
*
14746683 TCCTACTTAATTGG
390 TCCTACTTAATTGA
14746697 TCTTTGCATTATACATTGCATGAGTTGAATGATTTTACCCCTCTAAGTGGGAGTGAAAAACTAGT
1 TCTTTGCATTATACATTGCATGAGTTGAATGATTTTACCCCTCTAAGTGGGAGTGAAAAACTAGT
14746762 CCTTCGTGAGGTTTTCACCTCCGTGTAGGATAGTGGATCGCCTTCGGGATACATCCGTACCTATG
66 CCTTCGTGAGGTTTTCACCTCCGTGTAGGATAGTGGATCGCCTTCGGGATACATCCGTACCTATG
14746827 TCTTCGTGAGATTTTCATCTCTGTGTAGCCATAGAGAAATGTATCCCCCTGAACTGAACTCGGTC
131 TCTTCGTGAGATTTTCATCTCTGTGTAGCCATAGAGAAATGTATCCCCCTGAACTGAACTCGGTC
* *
14746892 TATATGAGCCTATAATGGGTGAGGATCGAGGAATCTGCTGGTTTAGGTACCATTACTTCAGAACA
196 TATATGAGCCTATAATGGGTGAGGATCGAGGAATCTGCTGGTTTAGGTACCCTTACTTCAGAACC
* *
14746957 GAACTGCATATAGAAGACCTTAGGAGCTCACCCTAGGTAGAGCCACTTCAAACCTCTGGTGGTCA
261 GAAC-GCATATAGAAGACCTTAGGAGCTCACCCTAGGTAGAGCCACTTCAAACCCCTAGTGGTCA
*
14747022 CCCGAATTTCTGTCTTAGGTCGAAAATTTTTAAAAGTTCATGAGATCCTTTTGCATTCATTATTT
325 CCCGAATTTCTGTCTTAGGTCGAAAATTTTTAAAAATTCATGAGATCCTTTTGCATTCATTATTT
* *
14747087 TCTTGCTTAATTGA
390 TCCTACTTAATTGA
* *
14747101 TCTTTGCGTTATACATTGCATGAGTTGAATGATTTTACCCCTCTAAGTGGGAGTGAGAAACTAGT
1 TCTTTGCATTATACATTGCATGAGTTGAATGATTTTACCCCTCTAAGTGGGAGTGAAAAACTAGT
*
14747166 CCTTCGTGAGGTTTTCACCTCCGTGCAGGATAGTGGATCGCCTTCGGGATACATCCGTACCTATG
66 CCTTCGTGAGGTTTTCACCTCCGTGTAGGATAGTGGATCGCCTTCGGGATACATCCGTACCTATG
* *
14747231 TCTTCGTGAGATTTTTATCTCTGTGTAGCCATAGGGAAATGTATCCCCCTGAACTGAACTCGGTC
131 TCTTCGTGAGATTTTCATCTCTGTGTAGCCATAGAGAAATGTATCCCCCTGAACTGAACTCGGTC
* *
14747296 TATATGAGCCTATAATGGGTGAGGAGCGAGGAATCTACTGGTTTAGGTACCCTTACTTCAGAACC
196 TATATGAGCCTATAATGGGTGAGGATCGAGGAATCTGCTGGTTTAGGTACCCTTACTTCAGAACC
*
14747361 GAACGCATATAGAAGACCTTAGAAGCTCACCCTAGGTAGAGCCACTTCAAACCCCTAGTGGTCAC
261 GAACGCATATAGAAGACCTTAGGAGCTCACCCTAGGTAGAGCCACTTCAAACCCCTAGTGGTCAC
14747426 CCGAAT
326 CCGAAT
14747432 AGACGTTCTA
Statistics
Matches: 712, Mismatches: 22, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
403 65 0.09
404 647 0.91
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (403 bp):
TCTTTGCATTATACATTGCATGAGTTGAATGATTTTACCCCTCTAAGTGGGAGTGAAAAACTAGT
CCTTCGTGAGGTTTTCACCTCCGTGTAGGATAGTGGATCGCCTTCGGGATACATCCGTACCTATG
TCTTCGTGAGATTTTCATCTCTGTGTAGCCATAGAGAAATGTATCCCCCTGAACTGAACTCGGTC
TATATGAGCCTATAATGGGTGAGGATCGAGGAATCTGCTGGTTTAGGTACCCTTACTTCAGAACC
GAACGCATATAGAAGACCTTAGGAGCTCACCCTAGGTAGAGCCACTTCAAACCCCTAGTGGTCAC
CCGAATTTCTGTCTTAGGTCGAAAATTTTTAAAAATTCATGAGATCCTTTTGCATTCATTATTTT
CCTACTTAATTGA
Found at i:14750763 original size:14 final size:15
Alignment explanation
Indices: 14750739--14750771 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14750729 TCCCAAGCTG
14750739 GGAAGGACCTTATGT
1 GGAAGGACCTTATGT
*
14750754 GGAA-GACCTTATTT
1 GGAAGGACCTTATGT
14750768 GGAA
1 GGAA
14750772 AAGCGTCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.27
Consensus pattern (15 bp):
GGAAGGACCTTATGT
Found at i:14752255 original size:88 final size:88
Alignment explanation
Indices: 14752098--14752316 Score: 332
Period size: 88 Copynumber: 2.5 Consensus size: 88
14752088 ATCAGTGAAG
* * * * * *
14752098 ATAGCAGATCTTGCCTTCTTGCACTGACAGCGAAGTAGATTGAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAAATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTA
14752163 GGTTGCAGCGGAGCAGGTTAAAA
66 GGTTGCAGCGGAGCAGGTTAAAA
* *
14752186 AGTA-CAAATCTTGTCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCT
1 A-TAGCAAATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCT
14752250 AGGTTGCAGCGGAGCAGGTTAAAA
65 AGGTTGCAGCGGAGCAGGTTAAAA
* *
14752274 ATAGCAGATCTTACCTTCCTGCACCGACAGCGAAGCAGATCGA
1 ATAGCAAATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGA
14752317 TGACCCCGGC
Statistics
Matches: 117, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
87 2 0.02
88 113 0.97
89 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (88 bp):
ATAGCAAATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTA
GGTTGCAGCGGAGCAGGTTAAAA
Found at i:14752377 original size:44 final size:43
Alignment explanation
Indices: 14752328--14752448 Score: 172
Period size: 44 Copynumber: 2.7 Consensus size: 43
14752318 GACCCCGGCT
14752328 CTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGT-AAGTC
1 CTATCTCCCT-GACAGCAGTGGAATAGGTTGAAGATTGTGAA-TC
*
14752372 CTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATC
1 CTATCTCCCT-GACAGCAGTGGAATAGGTTGAAGATTGTGAATC
* *
14752416 CTATCTCCCTGAGCAACAGTGGAGTAGGTTGAA
1 CTATCTCCCTGA-CAGCAGTGGAATAGGTTGAA
14752449 AATAGCTGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
43 1 0.01
44 67 0.96
45 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (43 bp):
CTATCTCCCTGACAGCAGTGGAATAGGTTGAAGATTGTGAATC
Found at i:14752875 original size:44 final size:43
Alignment explanation
Indices: 14752812--14753094 Score: 206
Period size: 44 Copynumber: 6.5 Consensus size: 43
14752802 GAAGATGGCG
* *
14752812 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAAT
* * * *
14752856 AATCTTATCTCTCTGAAGTTGTAGTGGAGCGGATTAAAATCACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCA-AT
* * * * *
14752900 GATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CGCATTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCA-AT
* * * * *
14752940 AGTCTTATCTCCCTAAAGTTCCAGTGGAGCAGACT-AAGTAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
* * * *
14752982 CAAGTCTTATC-CTCCTAAAGTTGCCGT-GAGGCAGACTAAAG-ATGGT
1 -AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGATTAAAGCA--AT
14753028 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAAT
*
14753073 AATCCTATCTCCCTGAAGTTGC
1 AATCTTATCTCCCTGAAGTTGC
14753095 NNNNNNNNNN
Statistics
Matches: 189, Mismatches: 33, Indels: 34
0.74 0.13 0.13
Matches are distributed among these distances:
39 2 0.01
40 19 0.10
41 7 0.04
42 3 0.02
43 12 0.06
44 102 0.54
45 37 0.20
46 6 0.03
47 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
Found at i:14754391 original size:25 final size:24
Alignment explanation
Indices: 14754349--14754396 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
14754339 GATACTTTAC
*
14754349 ATTTCGTTATTTTTTATGTACATTA
1 ATTTCGTTATTTTCTATG-ACATTA
14754374 ATTTCGTT-TATTTCTATGACATT
1 ATTTCGTTAT-TTTCTATGACATT
14754397 GTTGTATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.23, C:0.10, G:0.08, T:0.58
Consensus pattern (24 bp):
ATTTCGTTATTTTCTATGACATTA
Found at i:14756420 original size:9 final size:9
Alignment explanation
Indices: 14756398--14756478 Score: 67
Period size: 9 Copynumber: 8.7 Consensus size: 9
14756388 ATTTATAAAA
*
14756398 ATAAAAATCA
1 ATAAAAAT-T
14756408 ATAAAAATT
1 ATAAAAATT
14756417 ATAAAAATT
1 ATAAAAATT
14756426 ATTAAAAA-T
1 A-TAAAAATT
14756435 ATAAAAAATT
1 AT-AAAAATT
* **
14756445 GTCAAATTTT
1 AT-AAAAATT
14756455 ATAAAAATT
1 ATAAAAATT
14756464 AT-AAAATAT
1 ATAAAAAT-T
14756473 ATAAAA
1 ATAAAA
14756479 TGCATCAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
8 6 0.10
9 27 0.47
10 25 0.43
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:14756422 original size:19 final size:18
Alignment explanation
Indices: 14756394--14756441 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
14756384 AAAAATTTAT
14756394 AAAA-ATAAAAATCAATA
1 AAAATATAAAAATCAATA
* *
14756411 AAAATTATAAAAATTATTA
1 AAAA-TATAAAAATCAATA
14756430 AAAATATAAAAA
1 AAAATATAAAAA
14756442 ATTGTCAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 4 0.15
18 8 0.30
19 15 0.56
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (18 bp):
AAAATATAAAAATCAATA
Found at i:14756470 original size:19 final size:19
Alignment explanation
Indices: 14756415--14756470 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
14756405 TCAATAAAAA
*
14756415 TTATAAAAATTATTAAAAAT
1 TTATAAAAATTA-TAAAATT
* * *
14756435 ATA-AAAAATTGTCAAATT
1 TTATAAAAATTATAAAATT
14756453 TTATAAAAATTATAAAAT
1 TTATAAAAATTATAAAAT
14756471 ATATAAAATG
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
18 7 0.25
19 19 0.68
20 2 0.07
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
TTATAAAAATTATAAAATT
Found at i:14757429 original size:9 final size:9
Alignment explanation
Indices: 14757407--14757487 Score: 67
Period size: 9 Copynumber: 8.7 Consensus size: 9
14757397 ATTTATAAAA
*
14757407 ATAAAAATCA
1 ATAAAAAT-T
14757417 ATAAAAATT
1 ATAAAAATT
14757426 ATAAAAATT
1 ATAAAAATT
14757435 ATTAAAAA-T
1 A-TAAAAATT
14757444 ATAAAAAATT
1 AT-AAAAATT
* **
14757454 GTCAAATTTT
1 AT-AAAAATT
14757464 ATAAAAATT
1 ATAAAAATT
14757473 AT-AAAATAT
1 ATAAAAAT-T
14757482 ATAAAA
1 ATAAAA
14757488 TGCATCAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
8 6 0.10
9 27 0.47
10 25 0.43
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:14757431 original size:19 final size:18
Alignment explanation
Indices: 14757403--14757450 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
14757393 AAAAATTTAT
14757403 AAAA-ATAAAAATCAATA
1 AAAATATAAAAATCAATA
* *
14757420 AAAATTATAAAAATTATTA
1 AAAA-TATAAAAATCAATA
14757439 AAAATATAAAAA
1 AAAATATAAAAA
14757451 ATTGTCAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 4 0.15
18 8 0.30
19 15 0.56
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (18 bp):
AAAATATAAAAATCAATA
Found at i:14757479 original size:19 final size:19
Alignment explanation
Indices: 14757424--14757479 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
14757414 TCAATAAAAA
*
14757424 TTATAAAAATTATTAAAAAT
1 TTATAAAAATTA-TAAAATT
* * *
14757444 ATA-AAAAATTGTCAAATT
1 TTATAAAAATTATAAAATT
14757462 TTATAAAAATTATAAAAT
1 TTATAAAAATTATAAAAT
14757480 ATATAAAATG
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
18 7 0.25
19 19 0.68
20 2 0.07
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
TTATAAAAATTATAAAATT
Found at i:14757870 original size:10 final size:10
Alignment explanation
Indices: 14757857--14757919 Score: 51
Period size: 10 Copynumber: 6.4 Consensus size: 10
14757847 ATTTATAAAG
14757857 TTTTATAATT
1 TTTTATAATT
*
14757867 TTTTCT-ATAT
1 TTTTATAAT-T
* *
14757877 TTCTAT-ATA
1 TTTTATAATT
14757886 TTTTATAATT
1 TTTTATAATT
*
14757896 TTTT-TACTAT
1 TTTTATAAT-T
14757906 TTTTATAATT
1 TTTTATAATT
14757916 TTTT
1 TTTT
14757920 GCGATTTTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
9 10 0.24
10 28 0.68
11 3 0.07
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTATAATT
Found at i:14757889 original size:29 final size:28
Alignment explanation
Indices: 14757857--14757917 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
14757847 ATTTATAAAG
14757857 TTTTATAATTTTTTCTA-TATTTCTATATA
1 TTTTATAATTTTTT-TACTATTTCTATA-A
*
14757886 TTTTATAATTTTTTTACTATTTTTATAA
1 TTTTATAATTTTTTTACTATTTCTATAA
14757914 TTTT
1 TTTT
14757918 TTGCGATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 7 0.23
29 23 0.77
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (28 bp):
TTTTATAATTTTTTTACTATTTCTATAA
Found at i:14757918 original size:29 final size:29
Alignment explanation
Indices: 14757848--14757918 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
14757838 TTCTTACGAA
*
14757848 TTTATAAAGTTTTATAATTTTTTCTATATT
1 TTTAT-AATTTTTATAATTTTTTCTATATT
*
14757878 TCTAT-ATATTTTATAATTTTTT-TACTATT
1 TTTATAAT-TTTTATAATTTTTTCTA-TATT
14757907 TTTATAATTTTT
1 TTTATAATTTTT
14757919 TGCGATTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
28 3 0.09
29 26 0.74
30 6 0.17
ACGTcount: A:0.28, C:0.04, G:0.01, T:0.66
Consensus pattern (29 bp):
TTTATAATTTTTATAATTTTTTCTATATT
Found at i:14757926 original size:19 final size:20
Alignment explanation
Indices: 14757886--14757932 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
14757876 TTTCTATATA
*
14757886 TTTTATAATTTTTTTACTAT
1 TTTTATAATTTTTTTACGAT
*
14757906 TTTTATAA-TTTTTTGCGAT
1 TTTTATAATTTTTTTACGAT
14757925 TTTTATAA
1 TTTTATAA
14757933 AAAATTCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (20 bp):
TTTTATAATTTTTTTACGAT
Found at i:14757986 original size:19 final size:19
Alignment explanation
Indices: 14757944--14757998 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
14757934 AAATTCTAAT
14757944 TTTTAATATTTTTATTAAA
1 TTTTAATATTTTTATTAAA
* *
14757963 ATTTAATAGTTTTTA-TAAG
1 TTTTAATA-TTTTTATTAAA
*
14757982 TTTTATTGATTTTTATT
1 TTTTAAT-ATTTTTATT
14757999 TTTTATCATT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 21 0.72
20 8 0.28
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (19 bp):
TTTTAATATTTTTATTAAA
Found at i:14767451 original size:37 final size:37
Alignment explanation
Indices: 14767368--14767451 Score: 125
Period size: 37 Copynumber: 2.3 Consensus size: 37
14767358 TGGTATAATG
14767368 GTAAGATTTGCTCAATTAAGTTCCATTCAATATAACA
1 GTAAGATTTGCTCAATTAAGTTCCATTCAATATAACA
* *
14767405 GTATGATTTGCTCAATTGAGCTT-CATTCAATATAACA
1 GTAAGATTTGCTCAATTAAG-TTCCATTCAATATAACA
*
14767442 GTAAAATTTG
1 GTAAGATTTG
14767452 GCTTGATAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
37 40 0.95
38 2 0.05
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (37 bp):
GTAAGATTTGCTCAATTAAGTTCCATTCAATATAACA
Found at i:14770322 original size:19 final size:19
Alignment explanation
Indices: 14770286--14770324 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14770276 TATTATTAAT
**
14770286 ATATTTATAATTCTAATAA
1 ATATTTATAATTAAAATAA
*
14770305 ATATTTATTATTAAAATAA
1 ATATTTATAATTAAAATAA
14770324 A
1 A
14770325 ATTAAAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:14771237 original size:15 final size:14
Alignment explanation
Indices: 14771207--14771240 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
14771197 ATATTCTAAT
14771207 AATAAAAAAATATA
1 AATAAAAAAATATA
*
14771221 AATAAAATAACTATA
1 AATAAAA-AAATATA
14771236 AATAA
1 AATAA
14771241 TATTATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (14 bp):
AATAAAAAAATATA
Found at i:14778977 original size:47 final size:46
Alignment explanation
Indices: 14778862--14778986 Score: 135
Period size: 46 Copynumber: 2.7 Consensus size: 46
14778852 GGCAATTTAC
* * * *
14778862 CTGCTCGACTAGTGGTTTATGCACAACGTATTTTACAGTAGTTTAT
1 CTGCTCGACCAGTGGTTTATCCACAACGTATTTTACAGGAGTTCAT
* * * *
14778908 CTGCTCAACCAGCGATTTATCCACAACGTATTTTAGTCGGGAG-TCAT
1 CTGCTCGACCAGTGGTTTATCCACAACGTATTTTA--CAGGAGTTCAT
* *
14778955 CTGCTCGACCAGTGGTTCATCCACAACATATT
1 CTGCTCGACCAGTGGTTTATCCACAACGTATT
14778987 AAGCAACATT
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
46 30 0.47
47 30 0.47
48 4 0.06
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (46 bp):
CTGCTCGACCAGTGGTTTATCCACAACGTATTTTACAGGAGTTCAT
Found at i:14779035 original size:93 final size:93
Alignment explanation
Indices: 14778938--14779169 Score: 247
Period size: 93 Copynumber: 2.5 Consensus size: 93
14778928 CCACAACGTA
* * *
14778938 TTTTAGTCGGGAG-TCATCTGCTCGACCAGTGGTTCATCCACAACATATTAAGCAACATTT-ATT
1 TTTTAGTCGGCAGTTCATCTGCACGACCAGTGGTTCATCCACAACATATT-AGC-ACATTTGATA
* ** *
14779001 TGCACCCATGGATGGTTCATCCACCAATAC
64 TACACAAAAGGATGGTTCATCCACCAATAC
* ** *
14779031 TTTTAGTCGGCAGTTTATCTGCACGACCAGTGGTTCATCCACAATGTATTAGCATATTTGATATA
1 TTTTAGTCGGCAGTTCATCTGCACGACCAGTGGTTCATCCACAACATATTAGCACATTTGATATA
14779096 CACAAAAGGATGGTTCATCCACCAATA-
66 CACAAAAGGATGGTTCATCCACCAATAC
** * *
14779123 TTCTTATTGTTAGCAGTTCATCTACAACGATCAGTGGTT-ATCCACAA
1 TT-TTA--GTCGGCAGTTCATCTGC-ACGACCAGTGGTTCATCCACAA
14779170 TGTGGTGTGA
Statistics
Matches: 117, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
92 7 0.06
93 45 0.38
94 32 0.27
95 21 0.18
96 12 0.10
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (93 bp):
TTTTAGTCGGCAGTTCATCTGCACGACCAGTGGTTCATCCACAACATATTAGCACATTTGATATA
CACAAAAGGATGGTTCATCCACCAATAC
Found at i:14793440 original size:131 final size:132
Alignment explanation
Indices: 14793233--14793496 Score: 505
Period size: 131 Copynumber: 2.0 Consensus size: 132
14793223 TTATAGAATT
14793233 ACAAAATATCCAAACTATATATATATATATATTATATTTAATGGACTCGCCAGTTTATTTAGGCA
1 ACAAAATATCCAAACTATATATATATATATATTATATTTAATGGACTCGCCAGTTTATTTAGGCA
14793298 ATTCATTTTCCACTATTTTTGTTGTTGGCCATGGAGGCTTCTAAATCCTCAAATGATAAGGTTAT
66 ATTCATTTTCCACTATTTTTGTTGTTGGCCATGGAGGCTTCTAAATCCTCAAATGATAAGGTTAT
14793363 TC
131 TC
14793365 ACAAAATAT-CAAACTATATATATATATATA-TATTATTTAATGGACTCGCCAGTTTATTTAGGC
1 ACAAAATATCCAAACTATATATATATATATATTA-TATTTAATGGACTCGCCAGTTTATTTAGGC
14793428 AATTCATTTTCCACTATTTTTGTTGTTGGCCATGGAGGCTTCTAAATCCTCAAATGATAAGGTTA
65 AATTCATTTTCCACTATTTTTGTTGTTGGCCATGGAGGCTTCTAAATCCTCAAATGATAAGGTTA
14793493 TTC
130 TTC
14793496 A
1 A
14793497 ATCCGAGAAG
Statistics
Matches: 131, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
130 2 0.02
131 120 0.92
132 9 0.07
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (132 bp):
ACAAAATATCCAAACTATATATATATATATATTATATTTAATGGACTCGCCAGTTTATTTAGGCA
ATTCATTTTCCACTATTTTTGTTGTTGGCCATGGAGGCTTCTAAATCCTCAAATGATAAGGTTAT
TC
Found at i:14798672 original size:21 final size:20
Alignment explanation
Indices: 14798648--14798686 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14798638 TCTTTTTGAA
*
14798648 TTTTATGAGTTTATTTTATAC
1 TTTTATGA-ATTATTTTATAC
*
14798669 TTTTTTGAATTATTTTAT
1 TTTTATGAATTATTTTAT
14798687 TTTTAATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.23, C:0.03, G:0.08, T:0.67
Consensus pattern (20 bp):
TTTTATGAATTATTTTATAC
Found at i:14800278 original size:47 final size:47
Alignment explanation
Indices: 14800162--14800284 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 47
14800152 ATATATATAA
* * * *
14800162 ATATATTTTTTATGC-GTGAAAATGAATCAATCTATAGCTGAATGTAT
1 ATATATTTGTTATGCAGTG-AAATGAATTAAACTATAGCCGAATGTAT
* * * *
14800209 ATGTAATTGTTATGCAGAGAAATGAATTAAACTATGGCCGAATGTAT
1 ATATATTTGTTATGCAGTGAAATGAATTAAACTATAGCCGAATGTAT
* *
14800256 ATATATTTGTTATGCATTGAAATAAATTA
1 ATATATTTGTTATGCAGTGAAATGAATTA
14800285 TTTGAAGTTA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
47 60 0.97
48 2 0.03
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.38
Consensus pattern (47 bp):
ATATATTTGTTATGCAGTGAAATGAATTAAACTATAGCCGAATGTAT
Found at i:14800454 original size:41 final size:41
Alignment explanation
Indices: 14800392--14800634 Score: 477
Period size: 41 Copynumber: 5.9 Consensus size: 41
14800382 TGTAAGTTTG
*
14800392 GGCTTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCA
1 GGCTCTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCA
14800433 GGCTCTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCA
1 GGCTCTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCA
14800474 GGCTCTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCA
1 GGCTCTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCA
14800515 GGCTCTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCA
1 GGCTCTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCA
14800556 GGCTCTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCA
1 GGCTCTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCA
14800597 GGCTCTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTA
1 GGCTCTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTA
14800635 NNNNNNNNNN
Statistics
Matches: 201, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 201 1.00
ACGTcount: A:0.19, C:0.24, G:0.30, T:0.27
Consensus pattern (41 bp):
GGCTCTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCA
Found at i:14807863 original size:47 final size:47
Alignment explanation
Indices: 14807784--14807945 Score: 139
Period size: 47 Copynumber: 3.4 Consensus size: 47
14807774 GGTTATGGCC
* ** *
14807784 GAATGTATATATATATTTGTTATACATTGAAATGAATTAATCTATAGCT
1 GAATGTATATGTA-A-TTGTTATACAGAGAAATGAATTAAACTATAGCT
* * * *
14807833 GAACGTATATGTAATTGTTATGCAGAGAAATAAATTAAACTATGGCT
1 GAATGTATATGTAATTGTTATACAGAGAAATGAATTAAACTATAGCT
* * * * ** *
14807880 -ATATATATATATATTTGTTATATATTG-AATGAATTAAGCTATAGCT
1 GA-ATGTATATGTAATTGTTATACAGAGAAATGAATTAAACTATAGCT
*
14807926 GAATGCATATGTAATTGTTA
1 GAATGTATATGTAATTGTTA
14807946 CGCCCTAGCC
Statistics
Matches: 88, Mismatches: 23, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
46 31 0.35
47 45 0.51
48 1 0.01
49 11 0.12
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.40
Consensus pattern (47 bp):
GAATGTATATGTAATTGTTATACAGAGAAATGAATTAAACTATAGCT
Found at i:14813373 original size:209 final size:210
Alignment explanation
Indices: 14813133--14813552 Score: 833
Period size: 209 Copynumber: 2.0 Consensus size: 210
14813123 ATTTATATAT
14813133 ATTTTAATATAAAATATTTTAGTTATATGTGTAAATATATACCTAAATTAATCCAAAATTTTCTT
1 ATTTTAATATAAAATATTTTAGTTATATGTGTAAATATATACCTAAATTAATCCAAAATTTTCTT
14813198 GATAATAATCAAAATAAAAAAAAAGAATATTGAATGGCCAAAAATAAACAAAATTACTAATTACT
66 GATAATAATCAAAATAAAAAAAAAGAATATTGAATGGCCAAAAATAAACAAAATTACTAATTACT
14813263 AAGAAGAACCCATCATTTTTCATGGTTTTGGATATTGGTGGGATCCCCTGTTTTTTCTCCCTGGA
131 AAGAAGAACCCATCATTTTTCATGGTTTTGGATATTGGTGGGATCCCCTGTTTTTTCTCCCTGGA
14813328 AAATTTAATTCTTGC
196 AAATTTAATTCTTGC
14813343 ATTTTAATAT-AAATATTTTAGTTATATGTGTAAATATATACCTAAATTAATCCAAAATTTTCTT
1 ATTTTAATATAAAATATTTTAGTTATATGTGTAAATATATACCTAAATTAATCCAAAATTTTCTT
14813407 GATAATAATCAAAATAAAAAAAAAGAATATTGAATGGCCAAAAATAAACAAAATTACTAATTACT
66 GATAATAATCAAAATAAAAAAAAAGAATATTGAATGGCCAAAAATAAACAAAATTACTAATTACT
14813472 AAGAAGAACCCATCATTTTTCATGGTTTTGGATATTGGTGGGATCCCCTGTTTTTTCTCCCTGGA
131 AAGAAGAACCCATCATTTTTCATGGTTTTGGATATTGGTGGGATCCCCTGTTTTTTCTCCCTGGA
14813537 AAATTTAATTCTTGC
196 AAATTTAATTCTTGC
14813552 A
1 A
14813553 AAAGAAAGAA
Statistics
Matches: 210, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
209 200 0.95
210 10 0.05
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (210 bp):
ATTTTAATATAAAATATTTTAGTTATATGTGTAAATATATACCTAAATTAATCCAAAATTTTCTT
GATAATAATCAAAATAAAAAAAAAGAATATTGAATGGCCAAAAATAAACAAAATTACTAATTACT
AAGAAGAACCCATCATTTTTCATGGTTTTGGATATTGGTGGGATCCCCTGTTTTTTCTCCCTGGA
AAATTTAATTCTTGC
Found at i:14816575 original size:84 final size:83
Alignment explanation
Indices: 14816280--14816584 Score: 226
Period size: 84 Copynumber: 3.6 Consensus size: 83
14816270 GGCAAAGTTG
* * ** * * *
14816280 AGGACTGTACTCCAAGGAGACTCAAGTTCAAGCAAAGGGT-ATATGTTAATAA-CATAAATGATG
1 AGGACTGTACTCCAAGGAGACTGAAGTTC-GGCAAAAAGTAAT-TGTTGACAACCA-AAATGGTG
* *
14816343 ATAACCAAAACAGTAGAGTCA
63 ATAACAAAAACAGTAAAGTCA
* * * * * * * *
14816364 AGGAGTTTACCCCGAA-GAGACTCAAGTTCAGACGAAGAGAAATTGTTGACAACCAAAATGGTGA
1 AGGACTGTACTCC-AAGGAGACTGAAGTTC-GGCAAAAAGTAATTGTTGACAACCAAAATGGTGA
* *
14816428 TAACCAAAACGGTAAAGTCA
64 TAACAAAAACAGTAAAGTCA
* * * * *
14816448 AGGAGTGTACTCCAATGAGACTGAAATTTCGGCGAAGAGTAATTGTTGACAACCAAAATGGTGAT
1 AGGACTGTACTCCAAGGAGACTG-AAGTTCGGCAAAAAGTAATTGTTGACAACCAAAATGGTGAT
*
14816513 AACAAAAACAGTAGAA-TCG
65 AACAAAAACAGTA-AAGTCA
* * *
14816532 AGGAACT-TACTTCAAGGATACATG-AGTTCAGGCAAAAATTAATTGTTGACAAC
1 AGG-ACTGTACTCCAAGGAGAC-TGAAGTTC-GGCAAAAAGTAATTGTTGACAAC
14816585 ATAGATGATC
Statistics
Matches: 182, Mismatches: 30, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
83 6 0.03
84 159 0.87
85 17 0.09
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21
Consensus pattern (83 bp):
AGGACTGTACTCCAAGGAGACTGAAGTTCGGCAAAAAGTAATTGTTGACAACCAAAATGGTGATA
ACAAAAACAGTAAAGTCA
Found at i:14816700 original size:81 final size:81
Alignment explanation
Indices: 14816626--14817043 Score: 701
Period size: 81 Copynumber: 5.2 Consensus size: 81
14816616 AGGAGTTTAG
* *
14816626 TCCAAGGAAACTTGAGTCCTGCCAAAGAAATCTTGACAACAGAAATTCTGATGATCAAAATAGTA
1 TCCAACGAAACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
14816691 GAGGTGAGGACTCTGC
66 GAGGTGAGGACTCTGC
14816707 TCCAACGAAACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
1 TCCAACGAAACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
14816772 GAGGTGAGGACTCTGC
66 GAGGTGAGGACTCTGC
* * * *
14816788 TCCAACGACACTTGAGTCCTGCCAAAGAACTCTTGCCAACAGAATTTCTGATGATCGAAATAGTA
1 TCCAACGAAACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
*
14816853 GAGGTGAGGACACTGC
66 GAGGTGAGGACTCTGC
* * *
14816869 TCCAACAAAACTTGAGTCCTGCCGAAGAGCTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
1 TCCAACGAAACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
*
14816934 GAGGTGAGGACACTGC
66 GAGGTGAGGACTCTGC
* * *
14816950 TCCAACAAAACTTGAGTCCTGCCGAAGAGCTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
1 TCCAACGAAACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
14817015 GAGGTGAGGACTCTGC
66 GAGGTGAGGACTCTGC
*
14817031 TCCAAGGAAACTT
1 TCCAACGAAACTT
14817044 ATCTTCAGGC
Statistics
Matches: 320, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 320 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (81 bp):
TCCAACGAAACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
GAGGTGAGGACTCTGC
Found at i:14839375 original size:24 final size:24
Alignment explanation
Indices: 14839306--14839378 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 24
14839296 ATGCACATTC
* *
14839306 GTATATGAGAGTCCCTTGTGTGGGAC
1 GTATATGAGAG-CCCTT-TATGGGAT
*
14839332 GTATA--AGAGCCCTTTTTGGGAT
1 GTATATGAGAGCCCTTTATGGGAT
*
14839354 GTATATGAGAGCCCCTTATGGGAT
1 GTATATGAGAGCCCTTTATGGGAT
14839378 G
1 G
14839379 AATGGAAGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
22 11 0.27
23 5 0.12
24 20 0.49
26 5 0.12
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.32
Consensus pattern (24 bp):
GTATATGAGAGCCCTTTATGGGAT
Found at i:14839460 original size:28 final size:28
Alignment explanation
Indices: 14839429--14839603 Score: 163
Period size: 28 Copynumber: 6.2 Consensus size: 28
14839419 GTTCGCTAGG
*
14839429 ACGATTTTAAACGTGGAAGTCCGTCAGA
1 ACGATCTTAAACGTGGAAGTCCGTCAGA
** *
14839457 ACGATCTTAAACGTGGAAGTTTG-CTAGG
1 ACGATCTTAAACGTGGAAGTCCGTC-AGA
* * *
14839485 ACAATCTTAAACGTGGAAGTCTGCCAGA
1 ACGATCTTAAACGTGGAAGTCCGTCAGA
** * * * *
14839513 ATAATCCTAAGCGTGGAAGTCCGCCAGG
1 ACGATCTTAAACGTGGAAGTCCGTCAGA
* * * *
14839541 ACGATCTTAAACATGGAAATTCATCAGA
1 ACGATCTTAAACGTGGAAGTCCGTCAGA
* *
14839569 ACGATCTTAAATGTGGAAGTCCGTCAGG
1 ACGATCTTAAACGTGGAAGTCCGTCAGA
14839597 ACGATCT
1 ACGATCT
14839604 AATGTGAAAG
Statistics
Matches: 117, Mismatches: 28, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
27 1 0.01
28 115 0.98
29 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (28 bp):
ACGATCTTAAACGTGGAAGTCCGTCAGA
Found at i:14839483 original size:56 final size:56
Alignment explanation
Indices: 14839414--14839603 Score: 211
Period size: 56 Copynumber: 3.4 Consensus size: 56
14839404 ACCATACACA
*
14839414 TGGAAGTTCGCTAGGACGATTTTAAACGTGGAAGTCCGTCAGAACGATCTTAAACG
1 TGGAAGTTCGCTAGGACGATCTTAAACGTGGAAGTCCGTCAGAACGATCTTAAACG
* * * * ** * *
14839470 TGGAAGTTTGCTAGGACAATCTTAAACGTGGAAGTCTGCCAGAATAATCCTAAGCG
1 TGGAAGTTCGCTAGGACGATCTTAAACGTGGAAGTCCGTCAGAACGATCTTAAACG
* * * * * * *
14839526 TGGAAGTCCGCCAGGACGATCTTAAACATGGAAATTCATCAGAACGATCTTAAATG
1 TGGAAGTTCGCTAGGACGATCTTAAACGTGGAAGTCCGTCAGAACGATCTTAAACG
*
14839582 TGGAAGTCCG-TCAGGACGATCT
1 TGGAAGTTCGCT-AGGACGATCT
14839604 AATGTGAAAG
Statistics
Matches: 108, Mismatches: 25, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
56 108 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (56 bp):
TGGAAGTTCGCTAGGACGATCTTAAACGTGGAAGTCCGTCAGAACGATCTTAAACG
Found at i:14855963 original size:20 final size:21
Alignment explanation
Indices: 14855940--14855995 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
14855930 TCTGGCAAAA
14855940 ACACTTGTTTTTTCATTT-TC
1 ACACTTGTTTTTTCATTTGTC
* *
14855960 ACACTCTTTCTTTTTCTTTTGTC
1 ACACT-TGT-TTTTTCATTTGTC
*
14855983 ACTCTTGTTTTTT
1 ACACTTGTTTTTT
14855996 TATCACTCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 5 0.17
21 7 0.24
22 11 0.38
23 6 0.21
ACGTcount: A:0.11, C:0.21, G:0.05, T:0.62
Consensus pattern (21 bp):
ACACTTGTTTTTTCATTTGTC
Found at i:14855994 original size:21 final size:22
Alignment explanation
Indices: 14855943--14855995 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
14855933 GGCAAAAACA
14855943 CTTGTTTTTTCATTTTCACACT
1 CTTGTTTTTTCATTTTCACACT
**
14855965 CTT-TCTTTTTC-TTTTGTCACT
1 CTTGT-TTTTTCATTTTCACACT
14855986 CTTGTTTTTT
1 CTTGTTTTTT
14855996 TATCACTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.08, C:0.21, G:0.06, T:0.66
Consensus pattern (22 bp):
CTTGTTTTTTCATTTTCACACT
Found at i:14856030 original size:15 final size:15
Alignment explanation
Indices: 14856010--14856063 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
14856000 ACTCTCATCA
14856010 TTCTTTTCTTTCTTT
1 TTCTTTTCTTTCTTT
**
14856025 TTCTTTTCACTCTTT
1 TTCTTTTCTTTCTTT
*
14856040 TTGTTTTC--TCTTT
1 TTCTTTTCTTTCTTT
14856053 TTCTCTTTCTT
1 TTCT-TTTCTT
14856064 GCTCAATAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 8 0.25
14 4 0.12
15 20 0.62
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.74
Consensus pattern (15 bp):
TTCTTTTCTTTCTTT
Found at i:14858190 original size:12 final size:13
Alignment explanation
Indices: 14858160--14858192 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
14858150 AACACAAAAT
14858160 AATTTTTTTTCAG
1 AATTTTTTTTCAG
14858173 AATTTTTTTTC-G
1 AATTTTTTTTCAG
14858185 -ATTTTTTT
1 AATTTTTTT
14858193 ACAAACTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
12 1 0.05
13 11 0.55
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (13 bp):
AATTTTTTTTCAG
Found at i:14864900 original size:33 final size:34
Alignment explanation
Indices: 14864863--14864934 Score: 119
Period size: 33 Copynumber: 2.1 Consensus size: 34
14864853 GAGTTAGTTT
14864863 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAG-A
1 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGTA
* *
14864896 ATTAATTTTAGTTCAGCTTAAATAAGTGTTAGTA
1 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGTA
14864930 ATTAA
1 ATTAA
14864935 TTTGTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 30 0.83
34 6 0.17
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (34 bp):
ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGTA
Found at i:14882663 original size:18 final size:18
Alignment explanation
Indices: 14882640--14882674 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14882630 GTTTCTGAAC
14882640 TTTTTGGCTAAGTCTAGA
1 TTTTTGGCTAAGTCTAGA
* *
14882658 TTTTTGGGTCAGTCTAG
1 TTTTTGGCTAAGTCTAG
14882675 GTTGTGTGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.11, G:0.26, T:0.46
Consensus pattern (18 bp):
TTTTTGGCTAAGTCTAGA
Found at i:14888745 original size:32 final size:31
Alignment explanation
Indices: 14888709--14888801 Score: 84
Period size: 32 Copynumber: 3.0 Consensus size: 31
14888699 GAGAAGTCTA
14888709 TTATATGAGGAAGCCTTTGTGGTTATCTAATG
1 TTATATGAGGAAGCCTTTGTGG-TATCTAATG
* * * *
14888741 TTATATAACGATGCCTTTGTGG-CTCTATATG
1 TTATATGAGGAAGCCTTTGTGGTATCTA-ATG
* *
14888772 -T-TATGTGGACGCCTTTGTGGCTATCTAATG
1 TTATATGAGGAAGCCTTTGTGG-TATCTAATG
14888802 ATGTATGGAC
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
29 15 0.31
30 8 0.16
31 7 0.14
32 19 0.39
ACGTcount: A:0.22, C:0.14, G:0.24, T:0.41
Consensus pattern (31 bp):
TTATATGAGGAAGCCTTTGTGGTATCTAATG
Found at i:14891892 original size:6 final size:6
Alignment explanation
Indices: 14891881--14891909 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
14891871 GCAAATGAAT
14891881 CATTTC CATTTC CATTTC CATTTC CATTT
1 CATTTC CATTTC CATTTC CATTTC CATTT
14891910 TGGAAATCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.31, G:0.00, T:0.52
Consensus pattern (6 bp):
CATTTC
Found at i:14895993 original size:97 final size:98
Alignment explanation
Indices: 14895826--14896021 Score: 376
Period size: 97 Copynumber: 2.0 Consensus size: 98
14895816 GAATCACCCA
14895826 TCGAGACTCCTTTTGTAACAGCCCAATGTTGACCCTAATCAGATATAATGGTTTTGAAACCACGA
1 TCGAGACTCCTTTTGTAACAGCCCAATGTTGACCCTAATCAGATATAATGGTTTTGAAACCACGA
*
14895891 ATTCGAGTCAGAAAAATATTTTTATATTATTTT
66 ATTCGAGTCAGAAAAATATTTTTATAATATTTT
14895924 TCGAGACTCC-TTTGTAACAGCCCAATGTTGACCCTAATCAGATATAATGGTTTTGAAACCACGA
1 TCGAGACTCCTTTTGTAACAGCCCAATGTTGACCCTAATCAGATATAATGGTTTTGAAACCACGA
14895988 ATTCGAGTCAGAAAAATATTTTTATAATATTTT
66 ATTCGAGTCAGAAAAATATTTTTATAATATTTT
14896021 T
1 T
14896022 AGTGTTTATT
Statistics
Matches: 97, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
97 87 0.90
98 10 0.10
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35
Consensus pattern (98 bp):
TCGAGACTCCTTTTGTAACAGCCCAATGTTGACCCTAATCAGATATAATGGTTTTGAAACCACGA
ATTCGAGTCAGAAAAATATTTTTATAATATTTT
Found at i:14904865 original size:28 final size:28
Alignment explanation
Indices: 14904825--14905041 Score: 425
Period size: 28 Copynumber: 7.8 Consensus size: 28
14904815 TGACTTTTGA
*
14904825 CACTAAGTGTGCGAATTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
14904853 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
14904881 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
14904909 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
14904937 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
14904965 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
14904993 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
14905021 CACTAAGTGTGCGAGTTTAAT
1 CACTAAGTGTGCGAGTTTAAT
14905042 NNNNNNNNNN
Statistics
Matches: 188, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 188 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.32
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:14905713 original size:23 final size:23
Alignment explanation
Indices: 14905646--14905879 Score: 181
Period size: 23 Copynumber: 10.0 Consensus size: 23
14905636 TCTACAATTG
* * *
14905646 GTATATATATGCTGCCCAATTTT
1 GTATATAAATGCTGTCAAATTTT
* *
14905669 GGTGA-ATAAATGCTCTCCAATTTT
1 -GT-ATATAAATGCTGTCAAATTTT
*
14905693 GTATATACATGCTGTCAAATTTT
1 GTATATAAATGCTGTCAAATTTT
*
14905716 GTGTATAAATGCTGTCCAAA-TTT
1 GTATATAAATGCTGT-CAAATTTT
* *
14905739 GTATATATATGCTGCCAAATTTT
1 GTATATAAATGCTGTCAAATTTT
*
14905762 GGTGA-ATAAATGCTGTCTAATTTT
1 -GT-ATATAAATGCTGTCAAATTTT
*
14905786 GTATATACATGCTGTCAAATTTT
1 GTATATAAATGCTGTCAAATTTT
* * * * *
14905809 GTGTATAAGTACTATCCAAA-TTG
1 GTATATAAATGCTGT-CAAATTTT
* * *
14905832 GTATATATATGCTGCCCAATTTT
1 GTATATAAATGCTGTCAAATTTT
*
14905855 GGTGA-ATAAATGCTGTCCAATTTT
1 -GT-ATATAAATGCTGTCAAATTTT
14905879 G
1 G
14905880 NNNNNNNNNN
Statistics
Matches: 167, Mismatches: 32, Indels: 23
0.75 0.14 0.10
Matches are distributed among these distances:
22 9 0.05
23 92 0.55
24 63 0.38
25 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (23 bp):
GTATATAAATGCTGTCAAATTTT
Found at i:14905714 original size:47 final size:47
Alignment explanation
Indices: 14905646--14905879 Score: 310
Period size: 47 Copynumber: 5.0 Consensus size: 47
14905636 TCTACAATTG
* *
14905646 GTATATATATGCTGCCCAATTTTGGTGAATAAATGCTCTCCAATTTT
1 GTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCCAATTTT
* * * *
14905693 GTATATACATGCTGTCAAATTTT-GTGTATAAATGCTGTCCAAATTT
1 GTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCCAATTTT
*
14905739 GTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCTAATTTT
1 GTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCCAATTTT
* * * * * * * *
14905786 GTATATACATGCTGTCAAATTTT-GTGTATAAGTACTATCCAAATTG
1 GTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCCAATTTT
*
14905832 GTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTT
1 GTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCCAATTTT
14905879 G
1 G
14905880 NNNNNNNNNN
Statistics
Matches: 156, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
46 77 0.49
47 79 0.51
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (47 bp):
GTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCCAATTTT
Found at i:14905746 original size:93 final size:93
Alignment explanation
Indices: 14905641--14905879 Score: 415
Period size: 93 Copynumber: 2.6 Consensus size: 93
14905631 AATGGTCTAC
*
14905641 AATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTCTCCAATTTTGTATATACATGCT
1 AATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCT
* *
14905706 GTCAAATTTTGTGTATAAATGCTGTCCA
66 GTCAAATTTTGTGTATAAATACTATCCA
* * *
14905734 AATTTGTATATATATGCTGCCAAATTTTGGTGAATAAATGCTGTCTAATTTTGTATATACATGCT
1 AATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCT
*
14905799 GTCAAATTTTGTGTATAAGTACTATCCA
66 GTCAAATTTTGTGTATAAATACTATCCA
14905827 AATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTG
1 AATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTG
14905880 NNNNNNNNNN
Statistics
Matches: 136, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 136 1.00
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (93 bp):
AATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCT
GTCAAATTTTGTGTATAAATACTATCCA
Found at i:14910644 original size:24 final size:24
Alignment explanation
Indices: 14910616--14910765 Score: 123
Period size: 23 Copynumber: 6.4 Consensus size: 24
14910606 TGGTCTAAAA
*
14910616 TTGGTATATATATGCTGCCCAATT
1 TTGGTATATAAATGCTGCCCAATT
*
14910640 TTGGTGA-ATAAATGCTGTCCAATT
1 TTGGT-ATATAAATGCTGCCCAATT
* * * *
14910664 TT-GTATATACATGCCGTCAAATT
1 TTGGTATATAAATGCTGCCCAATT
* * * *
14910687 TT-GTGTATAAGTGCTGTCCAA-A
1 TTGGTATATAAATGCTGCCCAATT
* * *
14910709 TTGCTACATATATGCTGCCCAATT
1 TTGGTATATAAATGCTGCCCAATT
14910733 TTGGTGA-ATAAATGCTGCCCAATT
1 TTGGT-ATATAAATGCTGCCCAATT
14910757 TT-GTATATA
1 TTGGTATATA
14910766 CATGNNNNNN
Statistics
Matches: 100, Mismatches: 20, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
22 4 0.04
23 50 0.50
24 44 0.44
25 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (24 bp):
TTGGTATATAAATGCTGCCCAATT
Found at i:14911156 original size:23 final size:23
Alignment explanation
Indices: 14911092--14911156 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
14911082 NNNNCTGTCA
* **
14911092 AATTTTGTGTATAAGTACTGTCC
1 AATTTTGTGTATAAGTGCTACCC
* * *
14911115 AAATTGGTATATATA-TGCTACCC
1 AATTTTGTGTATA-AGTGCTACCC
14911138 AATTTTGTGTATAAGTGCT
1 AATTTTGTGTATAAGTGCT
14911157 GTACAAATTG
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
22 1 0.03
23 29 0.94
24 1 0.03
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (23 bp):
AATTTTGTGTATAAGTGCTACCC
Found at i:14911281 original size:93 final size:92
Alignment explanation
Indices: 14911092--14912755 Score: 1254
Period size: 93 Copynumber: 17.8 Consensus size: 92
14911082 NNNNCTGTCA
* * * * * * **
14911092 AATTTT-GTGTATAAGTACTGTCCAAATTGGTATATATATGCTACCCAATTTTGTGTATAAGTGC
1 AATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCT-GTCAATTTTGTGTATAAGTGC
* * * *
14911156 TGTACAAATTGCTACATATATGCTGCCA
65 TGTCCAAATTGGTATATATATGCTGCCC
* * * *
14911184 AATTTTGGTGAATAAATGCGGCCCAATTTTGTATATAACATGTTGTCAATTTTGTGTATAAGTGA
1 AATTTTGGTGAATAAATGCTGTCCAATTTTGTATAT-ACATGCTGTCAATTTTGTGTATAAGTGC
14911249 TGTCCAAATTGGTATATATATGCTGCCC
65 TGTCCAAATTGGTATATATATGCTGCCC
* ** *
14911277 AATTTTGGTGAATAAATGCAGTCCAATTTTGTATATACACACTGTCAAATTTTGTGTATAAGTAC
1 AATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTC-AATTTTGTGTATAAGTGC
*
14911342 TGTCCAAATTGGTATATATATGCTACCC
65 TGTCCAAATTGGTATATATATGCTGCCC
* * * ** * * * * *
14911370 AATTTT-GTGTATAAGTGCTGTCCAAATTCCTACATATATGCTGCCAAATTTTGGTGAATAAATG
1 AATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTC-AATTTT-GTGTATAAGTG
* * * * * * * *
14911434 CGGCCCAATTTTGTATATACATGTTGTCA
64 CTGTCCAAATTGGTATATATATGCTGCCC
** * * * * * * * *
14911463 AATTTT-GTGTCTAAGTGTTGTCCAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATG
1 AATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTG-TCAATTTT-GTGTATAAGTG
* * * * *
14911527 CTGTCCAATTTTGTATATACATGCCGTCC
64 CTGTCCAAATTGGTATATATATGCTGCCC
* * * * * * * *
14911556 AATTTT-GTGTATAACTGCTGTCCAA-ATTGCTACATATATGCTGCCCAATTTTGGTGAATAAAT
1 AATTTTGGTGAATAAATGCTGTCCAATTTTG-TATATACATGCTG-TCAATTTT-GTGTATAAGT
* * * * * *
14911619 GATGTACAATTTTGTATATACATGCTGTCC
63 GCTGTCCAAATTGGTATATATATGCTGCCC
* * * * * * * * *
14911649 AATTTTGG-GTATAACTGTTGTCCAA-ATTGCTACATATATGCTGCCCAATTTTGGTGAATAAAT
1 AATTTTGGTGAATAAATGCTGTCCAATTTTG-TATATACATGCTG-TCAATTTT-GTGTATAAGT
* * * *
14911712 GCTGTCCAATTTTGTATATACATGCTGTCC
63 GCTGTCCAAATTGGTATATATATGCTGCCC
* * * * * * * *
14911742 AATTTT-GTGTATAAGTGCTGTCCAA-ATTGCTACATATATGCTGCCCAATTTTGGTGAATAAAT
1 AATTTTGGTGAATAAATGCTGTCCAATTTTG-TATATACATGCTG-TCAATTTT-GTGTATAAGT
* * * *
14911805 GCTGTCCAATTTTGTATATACATGCTGTCC
63 GCTGTCCAAATTGGTATATATATGCTGCCC
* * * * * * * *
14911835 AATTTT-GT-ATGTAAGTGCTGTCCAA-ATTGCTACATATATGCTGCCCAATTTTGGTGAATAAA
1 AATTTTGGTGA-ATAAATGCTGTCCAATTTTG-TATATACATGCTG-TCAATTTT-GTGTATAAG
* * * *
14911897 TGCTGTCCAATTTTGTATATACATGCTAATATGCTGGCA
62 TGCTGTCCAA-ATTG-GTAT--A---T-ATATGCTGCCC
* *
14911936 AATTCTGGTGAATAAATGCTGTCCAATTTTGTATATACATGTTGTCAAATTTTGTGTATAAGTGC
1 AATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTC-AATTTTGTGTATAAGTGC
* * * * *
14912001 TGTCCAAATTGCTACAAATATGCTGGCA
65 TGTCCAAATTGGTATATATATGCTGCCC
* * * *
14912029 AATTCTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCCGATTTTGTATGTAAGTGC
1 AATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGT-CAATTTTGTGTATAAGTGC
* * *
14912094 TGTCCAAATTGCTACATATATGCTGACC
65 TGTCCAAATTGGTATATATATGCTGCCC
* *
14912122 AATTTTGGTGAATAAATGCTTTCCAATTTTGTATATACATGCTGTCCAATTTTGTGTATAAGTGT
1 AATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGT-CAATTTTGTGTATAAGTGC
* * *
14912187 TGTCCAAATTGCTACATATATGCTGCCA
65 TGTCCAAATTGGTATATATATGCTGCCC
* * *
14912215 AATTTTGGTGAATAAATGTTGTTCAATTTTGTATATACATGTTGTCAAATTTTGTGTATAAGTGC
1 AATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTC-AATTTTGTGTATAAGTGC
* *
14912280 TGTCCAAATCGGTATATATATGCTGCCA
65 TGTCCAAATTGGTATATATATGCTGCCC
* * *
14912308 AATTTTGGTGAATAAATGTTGTTCAATTTTGTATATACATGTTGTCAAATTTTGTGTATAAGTGC
1 AATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTC-AATTTTGTGTATAAGTGC
*
14912373 TGTCCAAATCGGTATATATATGCTGCCC
65 TGTCCAAATTGGTATATATATGCTGCCC
* *
14912401 AATTTTGGTGAATAAATGCTGTCCAATTTTGTGTATACATGTTGTCAAATTTTGTGTATAAGTGC
1 AATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTC-AATTTTGTGTATAAGTGC
*
14912466 TGTCCAAATTGGTATATATATGCTACCC
65 TGTCCAAATTGGTATATATATGCTGCCC
* * * * * * * * *
14912494 AATTTT-GTGTATAAGTGCTGTACAA-ATTGCTACATATATGCTGCCAAATTTTGGTGAATAAAT
1 AATTTTGGTGAATAAATGCTGTCCAATTTTG-TATATACATGCTGTC-AATTTT-GTGTATAAGT
* * * * * * *
14912557 GCTGTCCAATTTTGTGTATACATGTTGTCA
63 GCTGTCCAAATTGGTATATATATGCTGCCC
** * * * * * * * *
14912587 AATTTT-GTGTCTAAGTGTTGTCCAAATTGGTATATATATATGCTGCCCAATTTTGGTGAATAAA
1 AATTTTGGTGAATAAATGCTGTCC-AATT-TTGTATATACATGCTG-TCAATTTT-GTGTATAAG
* * * * ***
14912651 TGCTGTCCAATTTTGTATATACATGTTGTAA
62 TGCTGTCCAAATTGGTATATATATGCTGCCC
* * * * *
14912682 AATTTT-GTGTATAAGTGCTGTCCAAATTGGTATATACATGCTGCTCAATTTCTGATGTATAAGA
1 AATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTG-TCAATTT-TG-TGTATAAGT
14912746 GCTGTCCAAA
63 GCTGTCCAAA
14912756 CAGGATAGAT
Statistics
Matches: 1380, Mismatches: 161, Indels: 60
0.86 0.10 0.04
Matches are distributed among these distances:
91 3 0.00
92 85 0.06
93 1101 0.80
94 33 0.02
95 81 0.06
96 3 0.00
97 2 0.00
99 2 0.00
100 4 0.00
101 31 0.02
102 31 0.02
103 4 0.00
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.39
Consensus pattern (92 bp):
AATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAATTTTGTGTATAAGTGCT
GTCCAAATTGGTATATATATGCTGCCC
Found at i:14911673 original size:279 final size:277
Alignment explanation
Indices: 14911092--14912754 Score: 1394
Period size: 279 Copynumber: 5.9 Consensus size: 277
14911082 NNNNCTGTCA
* * * * * * * * *
14911092 AATTTTGTGTATAAGTACTGTCCAAATTGGTATATATATGCTACCCAATTTT-GTGTATAAGTGC
1 AATTTTGGGTATAAATGCTGTCCAAATTGCTACATATATGCTGCCAAATTTTGGTGAATAAATGC
* * * * * * * ** * * *
14911156 TGTACAA-ATTGCTACATATATGCTGCCAAATTTTGGTGAATAAATGCGGCCCAATTTTGTATAT
66 TGTCCAATTTTG-TATATACATGCTGTCAAATTTT-GTGTATAAGTGTTGTCCAAATTGGTATAT
* * * * * * * * * *
14911220 AACATGTTG-TCAATTTT-GTGTATAAGTGATGTCCAAATTGGTATATATATGCTGCCCAATTTT
129 -ATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCCAATTTT
* * * ** * * * * *
14911283 GGTGAATAAATGCAGTCCAATTTTGTATATACACACTGTCAAATTTTGTGTATAAGTACTGTCCA
193 -GTGTATAAATGCTGTCCAA-ATTGTATATACATGCTGCCCAATTTTGTGAATAAATGCTGTCCA
* * *
14911348 AATTGGTATATATATGCTACCC
256 ATTTTGTATATATATGCTGCCC
* * *
14911370 AATTTTGTGTATAAGTGCTGTCCAAATTCCTACATATATGCTGCCAAATTTTGGTGAATAAATGC
1 AATTTTGGGTATAAATGCTGTCCAAATTGCTACATATATGCTGCCAAATTTTGGTGAATAAATGC
* * * *
14911435 GGCCCAATTTTGTATATACATGTTGTCAAATTTTGTGTCTAAGTGTTGTCCAAATTGGTATATAT
66 TGTCCAATTTTGTATATACATGCTGTCAAATTTTGTGTATAAGTGTTGTCCAAATTGGTATATAT
*
14911500 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCCGTCCAATTTTGTG
131 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCCAATTTTGTG
* * * * *
14911565 TATAACTGCTGTCCAAATTGCTACATATATGCTGCCCAATTTTGGTGAATAAATGATGTACAATT
196 TATAAATGCTGTCCAAATTG-TATATACATGCTGCCCAATTTT-GTGAATAAATGCTGTCCAATT
* *
14911630 TTGTATATACATGCTGTCC
259 TTGTATATATATGCTGCCC
* * *
14911649 AATTTTGGGTATAACTGTTGTCCAAATTGCTACATATATGCTGCCCAATTTTGGTGAATAAATGC
1 AATTTTGGGTATAAATGCTGTCCAAATTGCTACATATATGCTGCCAAATTTTGGTGAATAAATGC
* * * *
14911714 TGTCCAATTTTGTATATACATGCTGTCCAATTTTGTGTATAAGTGCTGTCCAAATTGCTACATAT
66 TGTCCAATTTTGTATATACATGCTGTCAAATTTTGTGTATAAGTGTTGTCCAAATTGGTATATAT
*
14911779 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCCAATTTTGTA
131 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCCAATTTTGTG
* * * *
14911844 TGTAAGTGCTGTCCAAATTGCTACATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATT
196 TATAAATGCTGTCCAAATTG-TATATACATGCTGCCCAATTTT-GTGAATAAATGCTGTCCAATT
* *
14911909 TTGTATATACATGCTAATATGCTGGCA
259 TTG--TAT--A---T-ATATGCTGCCC
* * * * * * * * *
14911936 AATTCTGGTGAATAAATGCTGTCCAATTTTG-TATATACATGTTGTCAAATTTT-GTGTATAAGT
1 AATTTTGG-GTATAAATGCTGTCCAA-ATTGCTACATATATGCTGCCAAATTTTGGTGAATAAAT
* * * * * * * * * * *
14911999 GCTGTCCAA-ATTGCTACAAATATGCTGGCAAATTCTGGTGAATAAATGCTGTCCAATTTTGTAT
64 GCTGTCCAATTTTG-TATATACATGCTGTCAAATT-TTGTGTATAAGTGTTGTCCAAATTGGTAT
* * * * * * * * *
14912063 ATACATGCTGTCCGATTTT-GT-ATGTAAGTGCTGTCCAA-ATTGCTACATATATGCTGACCAAT
127 ATATATGCTGCCCAATTTTGGTGA-ATAAATGCTGTCCAATTTTG-TATATACATGCTGTCCAAT
* * * * * * *
14912125 TTTGGTGAATAAATGCTTTCCAATTTTGTATATACATGCTGTCCAATTTTGTGTATAAGTGTTGT
190 TTT-GTGTATAAATGCTGTCCAA-ATTGTATATACATGCTGCCCAATTTTGTGAATAAATGCTGT
* * *
14912190 CCAA-ATTGCTACATATATGCTGCCA
253 CCAATTTTG-TATATATATGCTGCCC
* * * * * * * * * *
14912215 AATTTTGGTGAATAAATGTTGTTCAATTTTG-TATATACATGTTGTCAAATTTT-GTGTATAAGT
1 AATTTTGG-GTATAAATGCTGTCCAA-ATTGCTACATATATGCTGCCAAATTTTGGTGAATAAAT
* ** * * * * * * *
14912278 GCTGTCCAAATCGGTATATATATGCTGCCAAATTTTGGTGAATAAATGTTGTTCAATTTTGTATA
64 GCTGTCCAATTTTGTATATACATGCTGTCAAATTTT-GTGTATAAGTGTTGTCCAAATTGGTATA
* * * * * * * ** * *
14912343 TACATGTTGTCAAATTTT-GTGTATAAGTGCTGTCCAAATCGGTATATATATGCTGCCCAATTTT
128 TATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCCAATTTT
* * * * * * * *
14912407 GGTGAATAAATGCTGTCCAATTTTGTGTATACATGTTGTCAAATTTTGTGTATAAGTGCTGTCCA
193 -GTGTATAAATGCTGTCCAA-ATTGTATATACATGCTGCCCAATTTTGTGAATAAATGCTGTCCA
* * *
14912472 AATTGGTATATATATGCTACCC
256 ATTTTGTATATATATGCTGCCC
* * *
14912494 AATTTTGTGTATAAGTGCTGTACAAATTGCTACATATATGCTGCCAAATTTTGGTGAATAAATGC
1 AATTTTGGGTATAAATGCTGTCCAAATTGCTACATATATGCTGCCAAATTTTGGTGAATAAATGC
* * *
14912559 TGTCCAATTTTGTGTATACATGTTGTCAAATTTTGTGTCTAAGTGTTGTCCAAATTGGTATATAT
66 TGTCCAATTTTGTATATACATGCTGTCAAATTTTGTGTATAAGTGTTGTCCAAATTGG--TATAT
* **
14912624 ATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGTTGTAAAATTTTG
129 ATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCCAATTTTG
* * *
14912689 TGTATAAGTGCTGTCCAAATTGGTATATACATGCTGCTCAATTTCTGATGTATAAGA-GCTGTCC
194 TGTATAAATGCTGTCCAAATT-GTATATACATGCTGCCCAATTT-TG-TGAATAA-ATGCTGTCC
14912753 AA
255 AA
14912755 ACAGGATAGA
Statistics
Matches: 1142, Mismatches: 207, Indels: 68
0.81 0.15 0.05
Matches are distributed among these distances:
277 12 0.01
278 156 0.14
279 637 0.56
280 60 0.05
281 41 0.04
282 16 0.01
283 2 0.00
285 2 0.00
286 11 0.01
287 97 0.08
288 102 0.09
289 6 0.01
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.39
Consensus pattern (277 bp):
AATTTTGGGTATAAATGCTGTCCAAATTGCTACATATATGCTGCCAAATTTTGGTGAATAAATGC
TGTCCAATTTTGTATATACATGCTGTCAAATTTTGTGTATAAGTGTTGTCCAAATTGGTATATAT
ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCCAATTTTGTG
TATAAATGCTGTCCAAATTGTATATACATGCTGCCCAATTTTGTGAATAAATGCTGTCCAATTTT
GTATATATATGCTGCCC
Found at i:14911945 original size:55 final size:53
Alignment explanation
Indices: 14911870--14912069 Score: 219
Period size: 55 Copynumber: 4.0 Consensus size: 53
14911860 ATTGCTACAT
* * *
14911870 ATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTA
1 ATATGCTGGCAAATTCTGGTGAATAAATGCTGTCCAATTTTGTATATACATG--A
14911925 ATATGCTGGCAAATTCTGGTGAATAAATGCTGTCCAATTTTGTATATACATG-
1 ATATGCTGGCAAATTCTGGTGAATAAATGCTGTCCAATTTTGTATATACATGA
* * * * *
14911977 -T-TG-T--CAAATT-TTGTGTATAAGTGCTGTCCAA-ATTG---CTACA--A
1 ATATGCTGGCAAATTCTGGTGAATAAATGCTGTCCAATTTTGTATATACATGA
14912018 ATATGCTGGCAAATTCTGGTGAATAAATGCTGTCCAATTTTGTATATACATG
1 ATATGCTGGCAAATTCTGGTGAATAAATGCTGTCCAATTTTGTATATACATG
14912070 CTGTCCGATT
Statistics
Matches: 119, Mismatches: 13, Indels: 28
0.74 0.08 0.17
Matches are distributed among these distances:
42 5 0.04
43 2 0.02
44 1 0.01
45 3 0.03
46 24 0.20
47 24 0.20
48 3 0.03
49 1 0.01
50 2 0.02
51 5 0.04
55 49 0.41
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (53 bp):
ATATGCTGGCAAATTCTGGTGAATAAATGCTGTCCAATTTTGTATATACATGA
Found at i:14911986 original size:23 final size:22
Alignment explanation
Indices: 14911950--14912729 Score: 297
Period size: 23 Copynumber: 33.5 Consensus size: 22
14911940 CTGGTGAATA
*
14911950 AATGCTGTCCAATTTTGTATAT
1 AATGCTGTCAAATTTTGTATAT
* *
14911972 ACATGTTGTCAAATTTTGTGTAT
1 A-ATGCTGTCAAATTTTGTATAT
* *
14911995 AAGTGCTGTCCAAA--TTGCTACAA
1 AA-TGCTGT-CAAATTTTG-TATAT
* *
14912018 ATATGCTGGCAAATTCTGGTGA-AT
1 A-ATGCTGTCAAATT-TTGT-ATAT
*
14912042 AAATGCTGTCCAATTTTGTATAT
1 -AATGCTGTCAAATTTTGTATAT
** *
14912065 ACATGCTGTCCGATTTTGTATGT
1 A-ATGCTGTCAAATTTTGTATAT
*
14912088 AAGTGCTGTCCAAA--TTGCTACAT
1 AA-TGCTGT-CAAATTTTG-TATAT
* *
14912111 ATATGCTGACCAATTTTGGTGA-AT
1 A-ATGCTGTCAAATTTT-GT-ATAT
* *
14912135 AAATGCTTTCCAATTTTGTATAT
1 -AATGCTGTCAAATTTTGTATAT
* *
14912158 ACATGCTGTCCAATTTTGTGTAT
1 A-ATGCTGTCAAATTTTGTATAT
* *
14912181 AAGTGTTGTCCAAA--TTGCTACAT
1 AA-TGCTGT-CAAATTTTG-TATAT
*
14912204 ATATGCTGCCAAATTTTGGTGA-AT
1 A-ATGCTGTCAAATTTT-GT-ATAT
*
14912228 AAATGTTGTTC-AATTTTGTATAT
1 -AATGCTG-TCAAATTTTGTATAT
* *
14912251 ACATGTTGTCAAATTTTGTGTAT
1 A-ATGCTGTCAAATTTTGTATAT
**
14912274 AAGTGCTGTCCAAA-TCGGTATAT
1 AA-TGCTGT-CAAATTTTGTATAT
*
14912297 ATATGCTGCCAAATTTTGGTGA-AT
1 A-ATGCTGTCAAATTTT-GT-ATAT
*
14912321 AAATGTTGTTC-AATTTTGTATAT
1 -AATGCTG-TCAAATTTTGTATAT
* *
14912344 ACATGTTGTCAAATTTTGTGTAT
1 A-ATGCTGTCAAATTTTGTATAT
**
14912367 AAGTGCTGTCCAAA-TCGGTATAT
1 AA-TGCTGT-CAAATTTTGTATAT
* *
14912390 ATATGCTGCCCAATTTTGGTGA-AT
1 A-ATGCTGTCAAATTTT-GT-ATAT
* *
14912414 AAATGCTGTCCAATTTTGTGTAT
1 -AATGCTGTCAAATTTTGTATAT
* *
14912437 ACATGTTGTCAAATTTTGTGTAT
1 A-ATGCTGTCAAATTTTGTATAT
*
14912460 AAGTGCTGTCCAAA-TTGGTATAT
1 AA-TGCTGT-CAAATTTTGTATAT
** * *
14912483 ATATGCTACCCAATTTTGTGTAT
1 A-ATGCTGTCAAATTTTGTATAT
*
14912506 AAGTGCTGTACAAA--TTGCTACAT
1 AA-TGCTGT-CAAATTTTG-TATAT
*
14912529 ATATGCTGCCAAATTTTGGTGA-AT
1 A-ATGCTGTCAAATTTT-GT-ATAT
* *
14912553 AAATGCTGTCCAATTTTGTGTAT
1 -AATGCTGTCAAATTTTGTATAT
* * *
14912576 ACATGTTGTCAAATTTTGTGTCT
1 A-ATGCTGTCAAATTTTGTATAT
* * *
14912599 AAGTGTTGTCCAAATTGGTATATAT
1 AA-TGCTGT-CAAATT-TTGTATAT
* *
14912624 ATATGCTGCCCAATTTTGGTGA-AT
1 A-ATGCTGTCAAATTTT-GT-ATAT
*
14912648 AAATGCTGTCCAATTTTGTATAT
1 -AATGCTGTCAAATTTTGTATAT
* * *
14912671 ACATGTTGTAAAATTTTGTGTAT
1 A-ATGCTGTCAAATTTTGTATAT
*
14912694 AAGTGCTGTCCAAA-TTGGTATAT
1 AA-TGCTGT-CAAATTTTGTATAT
14912717 ACATGCTGCTCAA
1 A-ATGCTG-TCAA
14912730 TTTCTGATGT
Statistics
Matches: 580, Mismatches: 94, Indels: 167
0.69 0.11 0.20
Matches are distributed among these distances:
22 63 0.11
23 324 0.56
24 162 0.28
25 30 0.05
26 1 0.00
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.40
Consensus pattern (22 bp):
AATGCTGTCAAATTTTGTATAT
Found at i:14912653 original size:95 final size:95
Alignment explanation
Indices: 14912494--14912717 Score: 362
Period size: 95 Copynumber: 2.4 Consensus size: 95
14912484 TATGCTACCC
* * *
14912494 AATTTTGTGTATAAGTGCTGTACAAATT-G-CTACATATATGCTGCCAAATTTTGGTGAATAAAT
1 AATTTTGTGTATAAGTGCTGTCCAAATTGGTATATATATATGCTGCCAAATTTTGGTGAATAAAT
* *
14912557 GCTGTCCAATTTTGTGTATACATGTTGTCA
66 GCTGTCCAATTTTGTATATACATGTTGTAA
* * *
14912587 AATTTTGTGTCTAAGTGTTGTCCAAATTGGTATATATATATGCTGCCCAATTTTGGTGAATAAAT
1 AATTTTGTGTATAAGTGCTGTCCAAATTGGTATATATATATGCTGCCAAATTTTGGTGAATAAAT
14912652 GCTGTCCAATTTTGTATATACATGTTGTAA
66 GCTGTCCAATTTTGTATATACATGTTGTAA
14912682 AATTTTGTGTATAAGTGCTGTCCAAATTGGTATATA
1 AATTTTGTGTATAAGTGCTGTCCAAATTGGTATATA
14912718 CATGCTGCTC
Statistics
Matches: 119, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
93 25 0.21
94 1 0.01
95 93 0.78
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (95 bp):
AATTTTGTGTATAAGTGCTGTCCAAATTGGTATATATATATGCTGCCAAATTTTGGTGAATAAAT
GCTGTCCAATTTTGTATATACATGTTGTAA
Found at i:14913135 original size:23 final size:23
Alignment explanation
Indices: 14913105--14913243 Score: 136
Period size: 23 Copynumber: 6.0 Consensus size: 23
14913095 ATTTTGGTGA
14913105 ATAAATGCTGTCCAATTTTGTAT
1 ATAAATGCTGTCCAATTTTGTAT
* * *
14913128 ATAAATGCTATCAAATTTTGTGT
1 ATAAATGCTGTCCAATTTTGTAT
* * * *
14913151 ATAAGTACTGTCCAAATTGGTAT
1 ATAAATGCTGTCCAATTTTGTAT
* *
14913174 ATATATGCTGCCCAATTTTGGTGA-
1 ATAAATGCTGTCCAATTTT-GT-AT
*
14913198 ATAAATGTTGTCCAATTTTGTAT
1 ATAAATGCTGTCCAATTTTGTAT
* * *
14913221 ATACATGCTGTCAAATTGTGTAT
1 ATAAATGCTGTCCAATTTTGTAT
14913244 GTGTTGTCCA
Statistics
Matches: 90, Mismatches: 23, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
22 1 0.01
23 70 0.78
24 18 0.20
25 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (23 bp):
ATAAATGCTGTCCAATTTTGTAT
Found at i:14913174 original size:46 final size:46
Alignment explanation
Indices: 14913086--14913303 Score: 178
Period size: 47 Copynumber: 4.7 Consensus size: 46
14913076 NNNNNNNNNN
* * * * *
14913086 TGCTGCCAAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATAAA
1 TGCTGTCAAATTTT-GTGTATAAGTGCTGTCCAAATTGGTATATAAA
* * *
14913133 TGCTATCAAATTTTGTGTATAAGTACTGTCCAAATTGGTATATATA
1 TGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGGTATATAAA
* * * * * * * *
14913179 TGCTGCCCAATTTTGGTGAATAAATGTTGTCCAATTTTGTATATACA
1 TGCTGTCAAATTTT-GTGTATAAGTGCTGTCCAAATTGGTATATAAA
*
14913226 TGCTGTCAAA--TTGTGTAT--GTGTTGTCCAAATTGGTATATACAA
1 TGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGGTATATA-AA
*
14913269 -GCTGCTC-AATTTCTGATGTATAAGAGCTGTCCAAA
1 TGCTG-TCAAATTT-TG-TGTATAAGTGCTGTCCAAA
14913304 CAGGGTAGAT
Statistics
Matches: 135, Mismatches: 27, Indels: 17
0.75 0.15 0.09
Matches are distributed among these distances:
42 25 0.19
43 3 0.02
44 6 0.04
45 4 0.03
46 42 0.31
47 45 0.33
48 10 0.07
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (46 bp):
TGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGGTATATAAA
Found at i:14913222 original size:47 final size:47
Alignment explanation
Indices: 14913086--14913237 Score: 189
Period size: 47 Copynumber: 3.3 Consensus size: 47
14913076 NNNNNNNNNN
14913086 TGCTGCCAAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATAAA
1 TGCTGCCAAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATAAA
** * * * * * *
14913133 TGCTATCAAATTTT-GTGTATAAGTACTGTCCAAATTGGTATATATA
1 TGCTGCCAAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATAAA
* * *
14913179 TGCTGCCCAATTTTGGTGAATAAATGTTGTCCAATTTTGTATATACA
1 TGCTGCCAAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATAAA
*
14913226 TGCTGTCAAATT
1 TGCTGCCAAATT
14913238 GTGTATGTGT
Statistics
Matches: 84, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
46 37 0.44
47 47 0.56
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.40
Consensus pattern (47 bp):
TGCTGCCAAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATAAA
Found at i:14919584 original size:20 final size:20
Alignment explanation
Indices: 14919547--14919585 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14919537 CTGCAGTTTG
* * *
14919547 AAAATTTTCATCTTTTTCCT
1 AAAAATTTCATATGTTTCCT
14919567 AAAAATTTCATATGTTTCC
1 AAAAATTTCATATGTTTCC
14919586 GATTTAGTCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.18, G:0.03, T:0.49
Consensus pattern (20 bp):
AAAAATTTCATATGTTTCCT
Found at i:14923309 original size:10 final size:10
Alignment explanation
Indices: 14923294--14923327 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
14923284 CGTCGAGATT
*
14923294 TTTATTTTTG
1 TTTATTTTTA
14923304 TTTATTTTTA
1 TTTATTTTTA
14923314 TTTATTTTCTA
1 TTTATTTT-TA
14923325 TTT
1 TTT
14923328 GCAAAGCCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 17 0.77
11 5 0.23
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:14926611 original size:19 final size:16
Alignment explanation
Indices: 14926587--14926631 Score: 56
Period size: 15 Copynumber: 2.7 Consensus size: 16
14926577 TGTAATAACT
14926587 TTTAATTAAACCAAATTAA
1 TTTAATTAAACC--ATT-A
14926606 TTTAATT-AACCATTA
1 TTTAATTAAACCATTA
14926621 TTTAATTAAAC
1 TTTAATTAAAC
14926632 AAAAAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.32
16 6 0.24
18 4 0.16
19 7 0.28
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (16 bp):
TTTAATTAAACCATTA
Found at i:14930065 original size:43 final size:43
Alignment explanation
Indices: 14930001--14930336 Score: 492
Period size: 43 Copynumber: 7.8 Consensus size: 43
14929991 CTTTTTTAGG
*
14930001 CCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGACCAAGA
1 CCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGA
*
14930044 CCTTTAGCGGCGCTTTCCCCACAAACGCCGCTAAAGACCAAGA
1 CCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGA
**
14930087 CCTTTAGCGGCAATTTTCCCACAAACGCCGCTAAAGACCAAGA
1 CCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGA
**
14930130 CCTTTAGCGGCAATTTTCCCACAAACGCCGCTAAAGACCAAGA
1 CCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGA
*
14930173 CCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCACGA
1 CCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGA
* *
14930216 CTTTTAGCGGCGCTTTTCCCACAAACGCCGTTAAAGACCAAGA
1 CCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGA
* * ** * * *
14930259 CCTTTAGCAGCACTTTTATCACAAACGCCACTATAGACCATGA
1 CCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGA
* ** *
14930302 CCTTTAGCGGCGCTTCTAGCAAAAACGCCGCTAAA
1 CCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA
14930337 AACATAAACT
Statistics
Matches: 266, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 266 1.00
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.20
Consensus pattern (43 bp):
CCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGA
Found at i:14930730 original size:17 final size:17
Alignment explanation
Indices: 14930708--14930740 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
14930698 ATACAAAATA
14930708 AAAACTTAATGCTACAG
1 AAAACTTAATGCTACAG
14930725 AAAACTTAATGCTACA
1 AAAACTTAATGCTACA
14930741 AAATAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.18, G:0.09, T:0.24
Consensus pattern (17 bp):
AAAACTTAATGCTACAG
Found at i:14934781 original size:14 final size:14
Alignment explanation
Indices: 14934748--14934774 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14934738 CCTTAAATCA
14934748 CTAACCACAAACCC
1 CTAACCACAAACCC
14934762 CTAACCACAAACC
1 CTAACCACAAACC
14934775 TTTAACCCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.48, G:0.00, T:0.07
Consensus pattern (14 bp):
CTAACCACAAACCC
Found at i:14934960 original size:81 final size:82
Alignment explanation
Indices: 14934791--14934964 Score: 205
Period size: 81 Copynumber: 2.1 Consensus size: 82
14934781 CCCTAACTAC
* *
14934791 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAATCCCA
1 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAATCCCA
* **
14934856 ACCCGAATACCTAACCCC
66 ACCCGAATA-CGAACCAA
*
14934874 TAACCCCTAAACCTTATTT-A-ATATAAATTAAAACACACTAATTAATCTAAACCCTAAA-CCCT
1 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAATCCC-
* *
14934936 AACCTGACAT-CGAATCAA
65 AACCCGA-ATACGAACCAA
14934954 TGAA-CCCTAAA
1 T-AACCCCTAAA
14934965 TCCCTAACTC
Statistics
Matches: 80, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
80 15 0.19
81 43 0.54
82 3 0.04
83 19 0.24
ACGTcount: A:0.45, C:0.26, G:0.02, T:0.26
Consensus pattern (82 bp):
TAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAATCCCA
ACCCGAATACGAACCAA
Found at i:14934985 original size:14 final size:14
Alignment explanation
Indices: 14934956--14935020 Score: 69
Period size: 14 Copynumber: 4.6 Consensus size: 14
14934946 CGAATCAATG
*
14934956 AACCCTAAATCCCT
1 AACCCTTAATCCCT
* *
14934970 AACTCTTAATCTCT
1 AACCCTTAATCCCT
14934984 AACCCTTAATCCCT
1 AACCCTTAATCCCT
* *
14934998 AACCCCTAAATCAC-
1 AA-CCCTTAATCCCT
14935012 AACCCTTAA
1 AACCCTTAA
14935021 ACCAGAACCC
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
13 6 0.14
14 27 0.64
15 9 0.21
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.26
Consensus pattern (14 bp):
AACCCTTAATCCCT
Found at i:14935015 original size:28 final size:29
Alignment explanation
Indices: 14934956--14935034 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 29
14934946 CGAATCAATG
* * * *
14934956 AACCCTAAATCCCTAA-CTCTTAATCTCT
1 AACCCTTAATCCCTAACCCCTAAATCACT
14934984 AACCCTTAATCCCTAACCCCTAAATCAC-
1 AACCCTTAATCCCTAACCCCTAAATCACT
* **
14935012 AACCCTTAAACCAGAACCCCTAA
1 AACCCTTAATCCCTAACCCCTAA
14935035 TCCATAGTCC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 35 0.81
29 8 0.19
ACGTcount: A:0.37, C:0.39, G:0.01, T:0.23
Consensus pattern (29 bp):
AACCCTTAATCCCTAACCCCTAAATCACT
Found at i:14935126 original size:14 final size:14
Alignment explanation
Indices: 14935107--14935144 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
14935097 ATCCTAAATT
14935107 AACCATATATCCTA
1 AACCATATATCCTA
*
14935121 AACCATATACCCTA
1 AACCATATATCCTA
*
14935135 AATCATATAT
1 AACCATATAT
14935145 ATTAAACCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (14 bp):
AACCATATATCCTA
Found at i:14935529 original size:41 final size:41
Alignment explanation
Indices: 14935483--14935625 Score: 227
Period size: 41 Copynumber: 3.5 Consensus size: 41
14935473 CGGCACTTCT
14935483 TCAAAAACGCCGCTAAAGCCAAGAGCATTAGCGGCGCTTTA
1 TCAAAAACGCCGCTAAAGCCAAGAGCATTAGCGGCGCTTTA
* *
14935524 TCAAAAACGCCGCTAAAGCCCAGAGCATTAGCGGCACTTTA
1 TCAAAAACGCCGCTAAAGCCAAGAGCATTAGCGGCGCTTTA
*
14935565 CCAAAAACGCCGCTAAAG-CACAGAGCATTAGCGGCGCTTT-
1 TCAAAAACGCCGCTAAAGCCA-AGAGCATTAGCGGCGCTTTA
14935605 TCCAAAAACGCCGCTAAAGCC
1 T-CAAAAACGCCGCTAAAGCC
14935626 TCGAATGGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
40 1 0.01
41 91 0.98
42 1 0.01
ACGTcount: A:0.34, C:0.30, G:0.20, T:0.15
Consensus pattern (41 bp):
TCAAAAACGCCGCTAAAGCCAAGAGCATTAGCGGCGCTTTA
Found at i:14935711 original size:40 final size:40
Alignment explanation
Indices: 14935661--14935796 Score: 148
Period size: 40 Copynumber: 3.4 Consensus size: 40
14935651 TGGGCTTAGG
* * * *
14935661 TTTTTTGCGGCGTTTTCTCAAAAAACGCCGCTAATTCTC-A
1 TTTTTAGCGGCGTTTTC-CATAAAGCGCCGCTAATGCTCGA
* * * *
14935701 TTTTTAGCGGCGCTTTCCCTAAGGCGCCGCTAATGCTCTA
1 TTTTTAGCGGCGTTTTCCATAAAGCGCCGCTAATGCTCGA
* * * *
14935741 TCTTTAGCAGCGTTTTACGTAAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTCCATAAAGCGCCGCTAATGCTCGA
14935781 TTTTTAGCGGCGTTTT
1 TTTTTAGCGGCGTTTT
14935797 GTATCCAAAC
Statistics
Matches: 79, Mismatches: 16, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 16 0.20
40 63 0.80
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTCCATAAAGCGCCGCTAATGCTCGA
Found at i:14947902 original size:45 final size:44
Alignment explanation
Indices: 14947836--14947962 Score: 175
Period size: 45 Copynumber: 2.8 Consensus size: 44
14947826 TCATTGGCTT
* *
14947836 GAAATGAATAAGACCACAGTTGAAAGACACAATGGCACTAT-ACCA
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGGCAC-ATGA-CA
* * *
14947881 GAAATGAATAAGACCATAGTTGAAAGACATTATAGCAACATGATA
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGGC-ACATGACA
14947926 GAAATGAATAAGACCATAGTTGAAAGACACTATGGCA
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGGCA
14947963 TCATTTCAGG
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
44 1 0.01
45 69 0.95
46 3 0.04
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (44 bp):
GAAATGAATAAGACCATAGTTGAAAGACACTATGGCACATGACA
Found at i:14947905 original size:21 final size:21
Alignment explanation
Indices: 14947881--14947950 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
14947871 CACTATACCA
14947881 GAAATGAATAAGACCATAGTT
1 GAAATGAATAAGACCATAGTT
* *
14947902 GAAA-GACATTATAGCAACAT-GATA
1 GAAATGA-A-TA-AG-ACCATAG-TT
14947926 GAAATGAATAAGACCATAGTT
1 GAAATGAATAAGACCATAGTT
14947947 GAAA
1 GAAA
14947951 GACACTATGG
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
20 2 0.05
21 14 0.37
22 5 0.13
23 5 0.13
24 10 0.26
25 2 0.05
ACGTcount: A:0.50, C:0.10, G:0.19, T:0.21
Consensus pattern (21 bp):
GAAATGAATAAGACCATAGTT
Found at i:14950897 original size:6 final size:6
Alignment explanation
Indices: 14950886--14950917 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
14950876 GAAGCTATCT
14950886 GAGTGA GAGTGA GAGTGA GAGTGA GAGTGA GA
1 GAGTGA GAGTGA GAGTGA GAGTGA GAGTGA GA
14950918 ATTTGTACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.50, T:0.16
Consensus pattern (6 bp):
GAGTGA
Found at i:14951255 original size:3 final size:3
Alignment explanation
Indices: 14951247--14951291 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
14951237 CCGCAAGTAA
*
14951247 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14951292 GATGTATCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14956552 original size:17 final size:17
Alignment explanation
Indices: 14956523--14956555 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14956513 TTAATTTATA
14956523 TAAATTAATTTCTCAAT
1 TAAATTAATTTCTCAAT
14956540 TAAA-TAATATTCTCAA
1 TAAATTAAT-TTCTCAA
14956556 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:14959432 original size:11 final size:12
Alignment explanation
Indices: 14959416--14959444 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14959406 AATCTGAAAG
14959416 TTTCCT-CCCTT
1 TTTCCTCCCCTT
14959427 TTTCCTCCCCTT
1 TTTCCTCCCCTT
14959439 TTTCCT
1 TTTCCT
14959445 TCTAAACTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (12 bp):
TTTCCTCCCCTT
Found at i:14964741 original size:15 final size:15
Alignment explanation
Indices: 14964721--14964763 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
14964711 TAGTTTTATA
14964721 TTTTGTTTATTTTGT
1 TTTTGTTTATTTTGT
14964736 TTTTGTTT-TTTTGT
1 TTTTGTTTATTTTGT
*
14964750 TTTTTTTTAATTTT
1 TTTTGTTT-ATTTT
14964764 ACAATGCACT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 13 0.52
15 8 0.32
16 4 0.16
ACGTcount: A:0.07, C:0.00, G:0.09, T:0.84
Consensus pattern (15 bp):
TTTTGTTTATTTTGT
Found at i:14965736 original size:19 final size:20
Alignment explanation
Indices: 14965714--14965769 Score: 73
Period size: 18 Copynumber: 3.0 Consensus size: 20
14965704 AAAAAAAGAA
*
14965714 AAATGAAAA-ATAAAAAAAC
1 AAATGAAAAGAGAAAAAAAC
*
14965733 AAATGAAAAGAGAAAAAAAT
1 AAATGAAAAGAGAAAAAAAC
14965753 AAA--AAAAGAGAAAAAAA
1 AAATGAAAAGAGAAAAAAA
14965770 TTAATTGAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 14 0.41
19 9 0.26
20 11 0.32
ACGTcount: A:0.80, C:0.02, G:0.11, T:0.07
Consensus pattern (20 bp):
AAATGAAAAGAGAAAAAAAC
Found at i:14968267 original size:22 final size:22
Alignment explanation
Indices: 14968200--14968267 Score: 57
Period size: 22 Copynumber: 3.0 Consensus size: 22
14968190 AATTTAATGT
*
14968200 CATAATATCTTTCAACTACGGT
1 CATAATATCTTTCAACTACGGC
* ** *
14968222 CTTACATAT-TTTCAGGTTAGGGC
1 CATA-ATATCTTTCA-ACTACGGC
*
14968245 CATAATATCTTTCAACTATGGC
1 CATAATATCTTTCAACTACGGC
14968267 C
1 C
14968268 TTACACATTT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
22 18 0.53
23 16 0.47
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (22 bp):
CATAATATCTTTCAACTACGGC
Found at i:14987482 original size:51 final size:51
Alignment explanation
Indices: 14987401--14987608 Score: 312
Period size: 51 Copynumber: 4.1 Consensus size: 51
14987391 ACTTCTGATC
*
14987401 AGTGACAAGTGATAAGT-AGTAGCTTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGA-TAGCTTTAGCTACACTTATCTGATCAGTGACA
* *
14987452 AGTGGCAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATTAGTGACA
1 AGTGACAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAGTGACA
*
14987503 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAGTGACA
* * * * *
14987554 AGTGGCAAGTGATAAGTGGTAGC-TTAACTACACTTATCTGATTAGGGACA
1 AGTGACAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAGTGACA
14987604 AGTGA
1 AGTGA
14987609 TGAGTGATCA
Statistics
Matches: 145, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
50 28 0.19
51 116 0.80
52 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:14987563 original size:102 final size:101
Alignment explanation
Indices: 14987401--14987608 Score: 362
Period size: 102 Copynumber: 2.0 Consensus size: 101
14987391 ACTTCTGATC
14987401 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGGCAAGTGATA
1 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGGCAAGTGATA
* *
14987466 AGTGATAGCTTTAGCTACACTTATCTGATTAGTGACA
66 AGTGATAGC-TTAACTACACTTATCTGATTAGGGACA
* *
14987503 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGGCAAGTGATA
1 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGGCAAGTGATA
*
14987568 AGTGGTAGCTTAACTACACTTATCTGATTAGGGACA
66 AGTGATAGCTTAACTACACTTATCTGATTAGGGACA
14987604 AGTGA
1 AGTGA
14987609 TGAGTGATCA
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
101 30 0.30
102 71 0.70
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (101 bp):
AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGGCAAGTGATA
AGTGATAGCTTAACTACACTTATCTGATTAGGGACA
Found at i:14989345 original size:36 final size:36
Alignment explanation
Indices: 14989291--14989384 Score: 118
Period size: 36 Copynumber: 2.6 Consensus size: 36
14989281 ACTTGCATCT
* * *
14989291 TCTTCCTCGACCGTATCTTCTTGCTTATTAGGATCA
1 TCTTCCTCGACTGCATCTTCTTGCTCATTAGGATCA
* **
14989327 TCTTCCTTGACTGCATCTTCTTGCTCATTAGGATTT
1 TCTTCCTCGACTGCATCTTCTTGCTCATTAGGATCA
14989363 TCTTCCTCGA-TCGCATCTTCTT
1 TCTTCCTCGACT-GCATCTTCTT
14989385 CCTAATCTGC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
35 1 0.02
36 49 0.98
ACGTcount: A:0.14, C:0.29, G:0.13, T:0.45
Consensus pattern (36 bp):
TCTTCCTCGACTGCATCTTCTTGCTCATTAGGATCA
Done.