Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 46 of 79
Found at i:15464643 original size:22 final size:23
Alignment explanation
Indices: 15464597--15464678 Score: 73
Period size: 22 Copynumber: 3.7 Consensus size: 23
15464587 ACCACACCAA
*
15464597 TAGGCACTGAAGTGCTTTAATAG
1 TAGGCACTGAAGTGCTTGAATAG
15464620 TAGGCA-TCGAAGTG-TTGAATAG
1 TAGGCACT-GAAGTGCTTGAATAG
* * * *
15464642 TAGGCACCGAGGTGC--AAATTTG
1 TAGGCACTGAAGTGCTTGAA-TAG
15464664 TAGGCACTGAAGTGC
1 TAGGCACTGAAGTGC
15464679 AAAGCAGTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
21 2 0.04
22 34 0.71
23 12 0.25
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (23 bp):
TAGGCACTGAAGTGCTTGAATAG
Found at i:15464733 original size:22 final size:21
Alignment explanation
Indices: 15464639--15464735 Score: 86
Period size: 22 Copynumber: 4.4 Consensus size: 21
15464629 AAGTGTTGAA
* *
15464639 TAGTAGGCACCGAGGTGCAAAT
1 TAGTAGGCACC-AAGTGCAAAG
* *
15464661 TTGTAGGCACTGAAGTGCAAAG
1 TAGTAGGCAC-CAAGTGCAAAG
* * *
15464683 CAGTAAGCACCATAGTGCAAAT
1 TAGTAGGCACCA-AGTGCAAAG
*
15464705 TATTAGGCACCATAGTGCAAAG
1 TAGTAGGCACCA-AGTGCAAAG
15464727 TAGTAGGCA
1 TAGTAGGCA
15464736 TAGAAGTGCA
Statistics
Matches: 59, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
21 1 0.02
22 58 0.98
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.21
Consensus pattern (21 bp):
TAGTAGGCACCAAGTGCAAAG
Found at i:15466813 original size:13 final size:13
Alignment explanation
Indices: 15466795--15466819 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15466785 GGGCTCACAC
15466795 GCCCATGTGGTCT
1 GCCCATGTGGTCT
15466808 GCCCATGTGGTC
1 GCCCATGTGGTC
15466820 CTACACACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.32, T:0.28
Consensus pattern (13 bp):
GCCCATGTGGTCT
Found at i:15474617 original size:19 final size:19
Alignment explanation
Indices: 15474583--15474635 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 19
15474573 GAATTTTGGG
15474583 AAAATTAAATTTAATCAAAT
1 AAAATTAAA-TTAATCAAAT
15474603 AAAATTAAATTAATCAAAT
1 AAAATTAAATTAATCAAAT
*
15474622 -TAATTAAAATTAAT
1 AAAATT-AAATTAAT
15474636 ATGATATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
18 4 0.13
19 18 0.58
20 9 0.29
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATTAAATTAATCAAAT
Found at i:15478238 original size:16 final size:16
Alignment explanation
Indices: 15478213--15478246 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15478203 ATTTATTTGC
*
15478213 ATTTAGTATAATAATA
1 ATTTAATATAATAATA
*
15478229 ATTTAATATAATTATA
1 ATTTAATATAATAATA
15478245 AT
1 AT
15478247 ATAAATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATTTAATATAATAATA
Found at i:15478360 original size:19 final size:19
Alignment explanation
Indices: 15478306--15478361 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
15478296 AAAATCTCGT
* *
15478306 TATTATAATTTTAAGAATA
1 TATTATAATTTTAAAAACA
15478325 TATTGTATTAA-TTTAAAAACA
1 TA-T-TA-TAATTTTAAAAACA
15478346 TATTATAATTTTAAAA
1 TATTATAATTTTAAAA
15478362 TTATTATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
18 3 0.10
19 11 0.35
20 2 0.06
21 12 0.39
22 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (19 bp):
TATTATAATTTTAAAAACA
Found at i:15478401 original size:22 final size:21
Alignment explanation
Indices: 15478370--15478411 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
15478360 AATTATTATA
*
15478370 AAACAAAGAGAATTATAGAAT
1 AAACAAAGAGAATAATAGAAT
15478391 AAACAAGAGAGAATAATAGAA
1 AAACAA-AGAGAATAATAGAA
15478412 AAATGAAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.64, C:0.05, G:0.17, T:0.14
Consensus pattern (21 bp):
AAACAAAGAGAATAATAGAAT
Found at i:15479064 original size:15 final size:15
Alignment explanation
Indices: 15479044--15479072 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15479034 TTCACTATTA
15479044 TATCTTTTATGTTTC
1 TATCTTTTATGTTTC
15479059 TATCTTTTATGTTT
1 TATCTTTTATGTTT
15479073 TGCATGCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.10, G:0.07, T:0.69
Consensus pattern (15 bp):
TATCTTTTATGTTTC
Found at i:15483825 original size:16 final size:16
Alignment explanation
Indices: 15483800--15483833 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15483790 ATTTATTTGC
*
15483800 ATTTAGTATAATAATA
1 ATTTAATATAATAATA
*
15483816 ATTTAATATAATTATA
1 ATTTAATATAATAATA
15483832 AT
1 AT
15483834 ATAAATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATTTAATATAATAATA
Found at i:15483947 original size:19 final size:19
Alignment explanation
Indices: 15483893--15483948 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
15483883 AAAATCTCGT
* *
15483893 TATTATAATTTTAAGAATA
1 TATTATAATTTTAAAAACA
15483912 TATTGTATTAA-TTTAAAAACA
1 TA-T-TA-TAATTTTAAAAACA
15483933 TATTATAATTTTAAAA
1 TATTATAATTTTAAAA
15483949 TTATTATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
18 3 0.10
19 11 0.35
20 2 0.06
21 12 0.39
22 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (19 bp):
TATTATAATTTTAAAAACA
Found at i:15483988 original size:22 final size:21
Alignment explanation
Indices: 15483957--15483998 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
15483947 AATTATTATA
*
15483957 AAACAAAGAGAATTATAGAAT
1 AAACAAAGAGAATAATAGAAT
15483978 AAACAAGAGAGAATAATAGAA
1 AAACAA-AGAGAATAATAGAA
15483999 AAATGAAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.64, C:0.05, G:0.17, T:0.14
Consensus pattern (21 bp):
AAACAAAGAGAATAATAGAAT
Found at i:15485348 original size:62 final size:58
Alignment explanation
Indices: 15485242--15485375 Score: 178
Period size: 62 Copynumber: 2.2 Consensus size: 58
15485232 TCCAAAAATA
* * * *
15485242 ATATTATTTTAATAAATTTAATATTTAATTTAATTTAATGTTTATCTTGTAAATAAATATT
1 ATATTAATTTAATAAATTTAATATTAAATTTAATCTAATATTTATCTTG---ATAAATATT
* *
15485303 CTATTAATTTAATAAATTTTAATATTAAATTTTATCTAATATTTATCTTGATAAATATT
1 ATATTAATTTAATAAA-TTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
15485362 ATATTAATTTAATA
1 ATATTAATTTAATA
15485376 TTAAAGTGAT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
59 22 0.34
61 14 0.22
62 29 0.45
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (58 bp):
ATATTAATTTAATAAATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
Found at i:15486807 original size:31 final size:31
Alignment explanation
Indices: 15486772--15486839 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
15486762 AACTTTCAGC
15486772 TCAGTCACTTAAC-TT-TCAAAAAAATAGCAAA
1 TCAGTCAC-TAACATTATC-AAAAAATAGCAAA
* *
15486803 TCAGTCACTAACATTATCAAAAAGTGGCAAA
1 TCAGTCACTAACATTATCAAAAAATAGCAAA
15486834 TCAGTC
1 TCAGTC
15486840 GTCTATTAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 4 0.12
31 27 0.82
32 2 0.06
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.25
Consensus pattern (31 bp):
TCAGTCACTAACATTATCAAAAAATAGCAAA
Found at i:15490171 original size:25 final size:25
Alignment explanation
Indices: 15490119--15490171 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
15490109 CATGCTTACA
**
15490119 TTTTTTTCTCAATGCTTTCCCATTT
1 TTTTTTTCTCAATGCTTTCCCAGAT
*
15490144 TTTTTTTCTCGATGCTTTCCCAGAT
1 TTTTTTTCTCAATGCTTTCCCAGAT
15490169 TTT
1 TTT
15490172 CTTAATCCTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.11, C:0.23, G:0.08, T:0.58
Consensus pattern (25 bp):
TTTTTTTCTCAATGCTTTCCCAGAT
Found at i:15490340 original size:21 final size:21
Alignment explanation
Indices: 15490314--15490354 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
15490304 CTGTTTGGTT
15490314 GGTGAGAAAACTAAAGAAAAG
1 GGTGAGAAAACTAAAGAAAAG
*
15490335 GGTGAGAAAACTGAAGAAAA
1 GGTGAGAAAACTAAAGAAAA
15490355 TGGATTTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.56, C:0.05, G:0.29, T:0.10
Consensus pattern (21 bp):
GGTGAGAAAACTAAAGAAAAG
Found at i:15493011 original size:11 final size:11
Alignment explanation
Indices: 15492997--15493023 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
15492987 TTAGTACAAT
15492997 ACAAAAGTTTC
1 ACAAAAGTTTC
15493008 ACAAAAGTTTC
1 ACAAAAGTTTC
15493019 ACAAA
1 ACAAA
15493024 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:15500803 original size:24 final size:24
Alignment explanation
Indices: 15500776--15500824 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
15500766 CATCTGTAGG
15500776 ATTATATGATATGACTATACAGAC
1 ATTATATGATATGACTATACAGAC
15500800 ATTATATGATATGACTATACAGAC
1 ATTATATGATATGACTATACAGAC
15500824 A
1 A
15500825 CACACACTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (24 bp):
ATTATATGATATGACTATACAGAC
Found at i:15504438 original size:70 final size:71
Alignment explanation
Indices: 15504322--15504455 Score: 207
Period size: 70 Copynumber: 1.9 Consensus size: 71
15504312 AATTTCATTT
* * * *
15504322 ATGTTTATTAGATAATCAACTCTGTTACAAAACATATTTTGTTATAGGCAACCCTCAGATTTTTT
1 ATGTTTATTAGACAATAAACTCTG-TACAAAACATAATTTATTATAGGCAACCCTCAGATTTTTT
15504387 TTCCTCC
65 TTCCTCC
*
15504394 ATGTTTATTTGACAATAAACTCTG-ACAAAACATAATTTATTATAGGCAACCCTCAGATTTTT
1 ATGTTTATTAGACAATAAACTCTGTACAAAACATAATTTATTATAGGCAACCCTCAGATTTTT
15504456 CTTGTTTCAC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 36 0.63
72 21 0.37
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.40
Consensus pattern (71 bp):
ATGTTTATTAGACAATAAACTCTGTACAAAACATAATTTATTATAGGCAACCCTCAGATTTTTTT
TCCTCC
Found at i:15506252 original size:6 final size:6
Alignment explanation
Indices: 15506241--15506265 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15506231 AATTTATTTG
15506241 TTTGGC TTTGGC TTTGGC TTTGGC T
1 TTTGGC TTTGGC TTTGGC TTTGGC T
15506266 CTGAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.32, T:0.52
Consensus pattern (6 bp):
TTTGGC
Found at i:15511532 original size:74 final size:75
Alignment explanation
Indices: 15511437--15511585 Score: 291
Period size: 74 Copynumber: 2.0 Consensus size: 75
15511427 TAAATTAACT
15511437 CATAATATTAATTTAACCAGGGTAGATTCTGTGATATTTTTATATGTGAATTTTTATTATATAAT
1 CATAATATTAATTTAACCAGGGTAGATTCTGTGATATTTTTATATGTGAATTTTTATTATATAAT
15511502 GTTTTTTGGA
66 GTTTTTTGGA
15511512 CATAATATT-ATTTAACCAGGGTAGATTCTGTGATATTTTTATATGTGAATTTTTATTATATAAT
1 CATAATATTAATTTAACCAGGGTAGATTCTGTGATATTTTTATATGTGAATTTTTATTATATAAT
15511576 GTTTTTTGGA
66 GTTTTTTGGA
15511586 TTTAGTTATT
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
74 65 0.88
75 9 0.12
ACGTcount: A:0.30, C:0.05, G:0.15, T:0.50
Consensus pattern (75 bp):
CATAATATTAATTTAACCAGGGTAGATTCTGTGATATTTTTATATGTGAATTTTTATTATATAAT
GTTTTTTGGA
Found at i:15514637 original size:129 final size:129
Alignment explanation
Indices: 15514404--15514644 Score: 306
Period size: 129 Copynumber: 1.9 Consensus size: 129
15514394 CTTATTCCAC
* *
15514404 AAACGCCACTAAAGCTCATGTTATTTAGCGGCGCTTATCCCACAAACGCCACTAAAGGTCATGCT
1 AAACGCCACTAAAGCTCATGTTATTTAGCGGCGCTTATCCCACAAACGCCACTAAAGATCATACT
** * *
15514469 CTTTAGTGGCGCTTATTCCACAAACTTCGGTAAATGTCATGTTCTTTGGCAGCGCTTATCTCAA
66 CTTTAGTGGCGCTTATTCCACAAACGCCGCTAAAGGTCATGTTCTTTGGCAGCGCTTATCTCAA
* * * * * * * *
15514533 AAACGCCTCTAAAGGTCATGTTCTTTAGCGGTGCTTATCCCACAATCGCCGCTATAGATCTTAAC
1 AAACGCCACTAAAGCTCATGTTATTTAGCGGCGCTTATCCCACAAACGCCACTAAAGATCAT-AC
* *
15514598 T-TTTAGTGGCGCTT-TTCTCGCAAGCGCCGCTAAAGGTCATGTTCTTT
65 TCTTTAGTGGCGCTTATTC-CACAAACGCCGCTAAAGGTCATGTTCTTT
15514645 AGTGGCGCTT
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
128 3 0.03
129 89 0.95
130 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (129 bp):
AAACGCCACTAAAGCTCATGTTATTTAGCGGCGCTTATCCCACAAACGCCACTAAAGATCATACT
CTTTAGTGGCGCTTATTCCACAAACGCCGCTAAAGGTCATGTTCTTTGGCAGCGCTTATCTCAA
Found at i:15514653 original size:129 final size:129
Alignment explanation
Indices: 15514399--15514668 Score: 303
Period size: 129 Copynumber: 2.1 Consensus size: 129
15514389 TGTCGCTTAT
* *
15514399 TCCACAAACGCCACTAAAGCTCATGTTATTTAGCGGCGCTTATCCCACAAACGCCACTAAAGGTC
1 TCCAAAAACGCCACTAAAGCTCATGTTATTTAGCGGCGCTTATCCCACAAACGCCACTAAAGATC
* ** * * *
15514464 ATGCTCTTTAGTGGCGCTTATTCCACAAACTTCGGTAAATGTCATGTTCTTTGGCAGCGCTTATC
66 ATACTCTTTAGTGGCGCTTATTCCACAAACGCCGCTAAAGGTCATGTTCTTTAGCAGCGCTT-TC
* * * * * * *
15514529 T-CAAAAACGCCTCTAAAGGTCATGTTCTTTAGCGGTGCTTATCCCACAATCGCCGCTATAGATC
1 TCCAAAAACGCCACTAAAGCTCATGTTATTTAGCGGCGCTTATCCCACAAACGCCACTAAAGATC
* * * **
15514593 TTAACT-TTTAGTGGCGCTT-TTCTCGCAAGCGCCGCTAAAGGTCATGTTCTTTAGTGGCGCTTT
66 AT-ACTCTTTAGTGGCGCTTATTC-CACAAACGCCGCTAAAGGTCATGTTCTTTAGCAGCGCTTT
*
15514656 T
129 C
15514657 TCCAAAAACGCC
1 TCCAAAAACGCC
15514669 GTAATAGATT
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
128 5 0.04
129 108 0.93
130 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (129 bp):
TCCAAAAACGCCACTAAAGCTCATGTTATTTAGCGGCGCTTATCCCACAAACGCCACTAAAGATC
ATACTCTTTAGTGGCGCTTATTCCACAAACGCCGCTAAAGGTCATGTTCTTTAGCAGCGCTTTC
Found at i:15514669 original size:43 final size:43
Alignment explanation
Indices: 15514392--15514669 Score: 249
Period size: 43 Copynumber: 6.5 Consensus size: 43
15514382 TTTACAATGT
* * *
15514392 CGCTTATTCCACAAACGCCACTAAAGCTCATGTTATTTAGCGG
1 CGCTTATTCCACAAACGCCGCTAAAGGTCATGTTCTTTAGCGG
* * * *
15514435 CGCTTATCCCACAAACGCCACTAAAGGTCATGCTCTTTAGTGG
1 CGCTTATTCCACAAACGCCGCTAAAGGTCATGTTCTTTAGCGG
** * * * *
15514478 CGCTTATTCCACAAACTTCGGTAAATGTCATGTTCTTTGGCAG
1 CGCTTATTCCACAAACGCCGCTAAAGGTCATGTTCTTTAGCGG
* *
15514521 CGCTTA-TCTCAAAAACGCCTCTAAAGGTCATGTTCTTTAGCGG
1 CGCTTATTC-CACAAACGCCGCTAAAGGTCATGTTCTTTAGCGG
* * * * * * *
15514564 TGCTTATCCCACAATCGCCGCTATAGATC-T-TAACTTTTAGTGG
1 CGCTTATTCCACAAACGCCGCTAAAGGTCATGT-TC-TTTAGCGG
* * *
15514607 CGCTT-TTCTCGCAAGCGCCGCTAAAGGTCATGTTCTTTAGTGG
1 CGCTTATTC-CACAAACGCCGCTAAAGGTCATGTTCTTTAGCGG
* *
15514650 CGCTTTTTCCAAAAACGCCG
1 CGCTTATTCCACAAACGCCG
15514670 TAATAGATTG
Statistics
Matches: 185, Mismatches: 42, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
41 1 0.01
42 6 0.03
43 171 0.92
44 6 0.03
45 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (43 bp):
CGCTTATTCCACAAACGCCGCTAAAGGTCATGTTCTTTAGCGG
Found at i:15518329 original size:222 final size:223
Alignment explanation
Indices: 15518069--15518514 Score: 885
Period size: 222 Copynumber: 2.0 Consensus size: 223
15518059 TTAATATTTA
15518069 ACTCAACTTTGTCTACTTCACTCTCACCAGCAAACAGAGACTGCCATCAGAAATATGAATTTTGT
1 ACTCAACTTTGTCTACTTCACTCTCACCAGCAAACAGAGACTGCCATCAGAAATATGAATTTTGT
15518134 TAAGTAATTTGGGAAAATTCATATAAATAAGGGAAAAAACGTTCAAATTTTAACATGTACCTGCC
66 TAAGTAATTTGGGAAAATTCATATAAATAAGGGAAAAAACGTTCAAATTTTAACATGTACCTGCC
15518199 CAAACAATAGTTCCGCCAAAACACAGGCAGCAAACCAGATGTCAATGGTCAAATATGTATTAAGT
131 CAAACAATAGTTCCGCCAAAACACAGGCAGCAAACCAGATGTCAATGGTCAAATATGTATTAAGT
15518264 TGCACCAAATGTTAATTCCGCCTACAAT
196 TGCACCAAATGTTAATTCCGCCTACAAT
15518292 ACTCAACTTTG-CTACTTCACTCTCACCAGCAAACAGAGACTGCCATCAGAAATATGAATTTTGT
1 ACTCAACTTTGTCTACTTCACTCTCACCAGCAAACAGAGACTGCCATCAGAAATATGAATTTTGT
15518356 TAAGTAATTTGGGAAAATTCATATAAATAAGGGAAAAAACGTTCAAATTTTAACATGTACCTGCC
66 TAAGTAATTTGGGAAAATTCATATAAATAAGGGAAAAAACGTTCAAATTTTAACATGTACCTGCC
15518421 CAAACAATAGTTCCGCCAAAACACAGGCAGCAAACCAGATGTCAATGGTCAAATATGTATTAAGT
131 CAAACAATAGTTCCGCCAAAACACAGGCAGCAAACCAGATGTCAATGGTCAAATATGTATTAAGT
15518486 TGCACCAAATGTTAATTCCGCCTACAAT
196 TGCACCAAATGTTAATTCCGCCTACAAT
15518514 A
1 A
15518515 GATGAACCAT
Statistics
Matches: 223, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
222 212 0.95
223 11 0.05
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26
Consensus pattern (223 bp):
ACTCAACTTTGTCTACTTCACTCTCACCAGCAAACAGAGACTGCCATCAGAAATATGAATTTTGT
TAAGTAATTTGGGAAAATTCATATAAATAAGGGAAAAAACGTTCAAATTTTAACATGTACCTGCC
CAAACAATAGTTCCGCCAAAACACAGGCAGCAAACCAGATGTCAATGGTCAAATATGTATTAAGT
TGCACCAAATGTTAATTCCGCCTACAAT
Found at i:15519729 original size:19 final size:19
Alignment explanation
Indices: 15519705--15519746 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
15519695 CGTCGGGTTG
*
15519705 GGGGAACTGTTAGGGATTA
1 GGGGAAATGTTAGGGATTA
* *
15519724 GGGGAAATTTTAGGGATTT
1 GGGGAAATGTTAGGGATTA
15519743 GGGG
1 GGGG
15519747 GAGATGACAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.45, T:0.29
Consensus pattern (19 bp):
GGGGAAATGTTAGGGATTA
Found at i:15520527 original size:15 final size:15
Alignment explanation
Indices: 15520509--15520538 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15520499 TTAAATAATA
*
15520509 ATTTATATTTATATT
1 ATTTACATTTATATT
15520524 ATTTACATTTATATT
1 ATTTACATTTATATT
15520539 TTAAAATAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTACATTTATATT
Found at i:15520698 original size:21 final size:22
Alignment explanation
Indices: 15520674--15520729 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
15520664 CCGTAAATCT
15520674 TAAACCCTAAACT-ATAAACCC
1 TAAACCCTAAACTCATAAACCC
* * *
15520695 TAAACCCCAAA-TCGTAAACCT
1 TAAACCCTAAACTCATAAACCC
*
15520716 TAAACCTTAAACTC
1 TAAACCCTAAACTC
15520730 GTCAATTAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 1 0.04
21 25 0.89
22 2 0.07
ACGTcount: A:0.45, C:0.32, G:0.02, T:0.21
Consensus pattern (22 bp):
TAAACCCTAAACTCATAAACCC
Found at i:15520726 original size:14 final size:14
Alignment explanation
Indices: 15520658--15520727 Score: 54
Period size: 14 Copynumber: 5.1 Consensus size: 14
15520648 ATACTGTAAG
*
15520658 CCTT-AACCGTAAA
1 CCTTAAACCCTAAA
*
15520671 TCTTAAACCCTAAA
1 CCTTAAACCCTAAA
15520685 -CTATAAACCCTAAA
1 CCT-TAAACCCTAAA
** * *
15520699 CCCCAAATCGTAAA
1 CCTTAAACCCTAAA
*
15520713 CCTTAAACCTTAAA
1 CCTTAAACCCTAAA
15520727 C
1 C
15520728 TCGTCAATTA
Statistics
Matches: 44, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
13 5 0.11
14 38 0.86
15 1 0.02
ACGTcount: A:0.43, C:0.31, G:0.03, T:0.23
Consensus pattern (14 bp):
CCTTAAACCCTAAA
Found at i:15521465 original size:114 final size:112
Alignment explanation
Indices: 15521256--15521700 Score: 390
Period size: 114 Copynumber: 3.9 Consensus size: 112
15521246 AAAACTGCGC
* ** * *
15521256 CGTTTTGGTTAACAA-TTTTGCGGCGCTTTCCCTAAAGCGCCACTAAAAGTTATTCTATAGCGGC
1 CGTTTTGGTCAA-AATTTTTGCGGCGC-TTCAGTAAAGCGCCACTAAAAGTGA-TATATAGCGGC
* * * *
15521320 GTTTTCAAATAAGCGCCGCTAATGCCTCTATAGGTCAAGCCGGAACGATG
63 GTTTTCAAGTAAGCGCCGCTAACGCCGCTATAGCTCAAGCCGGAACGATG
* * *
15521370 GGTTTTGGTCAAAATTTTTGCGGCGCTTCAGTAAAAGTGCCACTAAAAGCTGATATATAGCGGCT
1 CGTTTTGGTCAAAATTTTTGCGGCGCTTCAGT-AAAGCGCCACTAAAAG-TGATATATAGCGGCG
** * * * * *
15521435 TTTTCGGGTAAGCGCCGCTAACGGCGCTATAGCTCAAGACGAAACGTTT
64 TTTTCAAGTAAGCGCCGCTAACGCCGCTATAGCTCAAGCCGGAACGATG
* ** *** ** * * * ** * **
15521484 CGTTTCGGTTTAAATTTTTTTAGCATTTTTTAGTTAAGCGCCGCTAATTGAGGGATATAGCGGCG
1 CGTTTTGGTCAAAATTTTTGCGGC--GCTTCAGTAAAGCGCCACTAAAAGTGATATATAGCGGCG
* * ** *
15521549 TTTTCAGGTAAGCGCCGCTAATGCCTTTATAGGTCAAGCCGGAACGATG
64 TTTTCAAGTAAGCGCCGCTAACGCCGCTATAGCTCAAGCCGGAACGATG
*
15521598 CGTTTTGGTCAAAATTTTTGCGGCGCTTCAGTAGAAGCGCCACTACAAGCTGATATATAGCGGCG
1 CGTTTTGGTCAAAATTTTTGCGGCGCTTCAGTA-AAGCGCCACTAAAAG-TGATATATAGCGGCG
* * *
15521663 TTTTCGAGTAAGCGCCACTGACAG-CGCTATAGCTCAAG
64 TTTTCAAGTAAGCGCCGCTAAC-GCCGCTATAGCTCAAG
15521701 ATGAAACGTT
Statistics
Matches: 250, Mismatches: 73, Indels: 16
0.74 0.22 0.05
Matches are distributed among these distances:
112 5 0.02
113 17 0.07
114 209 0.84
115 14 0.06
116 5 0.02
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.29
Consensus pattern (112 bp):
CGTTTTGGTCAAAATTTTTGCGGCGCTTCAGTAAAGCGCCACTAAAAGTGATATATAGCGGCGTT
TTCAAGTAAGCGCCGCTAACGCCGCTATAGCTCAAGCCGGAACGATG
Found at i:15521709 original size:228 final size:228
Alignment explanation
Indices: 15521311--15521781 Score: 753
Period size: 228 Copynumber: 2.1 Consensus size: 228
15521301 AAAGTTATTC
*
15521311 TATAGCGGCGTTTTCAAATAAGCGCCGCTAATGCCTCTATAGGTCAAGCCGGAACGATGGGTTTT
1 TATAGCGGCGTTTTCAAATAAGCGCCGCTAATGCCTCTATAGGTCAAGCCGGAACGATGCGTTTT
* *
15521376 GGTCAAAATTTTTGCGGCGCTTCAGTAAAAGTGCCACTAAAAGCTGATATATAGCGGCTTTTTCG
66 GGTCAAAATTTTTGCGGCGCTTCAGTAAAAGCGCCACTAAAAGCTGATATATAGCGGCGTTTTCG
* * * * * ** *
15521441 GGTAAGCGCCGCTAACGGCGCTATAGCTCAAGACGAAACGTTTCGTTTCGGTTTAAATTTTTTTA
131 AGTAAGCGCCACTAACAGCGCTATAGCTCAAGACGAAACGTTGCATTTCGGTTTAAAAGTTTCTA
15521506 GCATTTTTTAGTTAAGCGCCGCTAATTGAGGGA
196 GCATTTTTTAGTTAAGCGCCGCTAATTGAGGGA
** *
15521539 TATAGCGGCGTTTTCAGGTAAGCGCCGCTAATGCCTTTATAGGTCAAGCCGGAACGATGCGTTTT
1 TATAGCGGCGTTTTCAAATAAGCGCCGCTAATGCCTCTATAGGTCAAGCCGGAACGATGCGTTTT
* *
15521604 GGTCAAAATTTTTGCGGCGCTTCAGTAGAAGCGCCACTACAAGCTGATATATAGCGGCGTTTTCG
66 GGTCAAAATTTTTGCGGCGCTTCAGTAAAAGCGCCACTAAAAGCTGATATATAGCGGCGTTTTCG
* * *
15521669 AGTAAGCGCCACTGACAGCGCTATAGCTCAAGATGAAACGTTGCATTTCGGTTTAAAAGTTTCTG
131 AGTAAGCGCCACTAACAGCGCTATAGCTCAAGACGAAACGTTGCATTTCGGTTTAAAAGTTTCTA
*
15521734 GCATTTTTTAGTTAAGCGCCGCTAATTGCGGGA
196 GCATTTTTTAGTTAAGCGCCGCTAATTGAGGGA
*
15521767 TATAACGGCGTTTTC
1 TATAGCGGCGTTTTC
15521782 TACAACCGCC
Statistics
Matches: 222, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
228 222 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (228 bp):
TATAGCGGCGTTTTCAAATAAGCGCCGCTAATGCCTCTATAGGTCAAGCCGGAACGATGCGTTTT
GGTCAAAATTTTTGCGGCGCTTCAGTAAAAGCGCCACTAAAAGCTGATATATAGCGGCGTTTTCG
AGTAAGCGCCACTAACAGCGCTATAGCTCAAGACGAAACGTTGCATTTCGGTTTAAAAGTTTCTA
GCATTTTTTAGTTAAGCGCCGCTAATTGAGGGA
Found at i:15521770 original size:114 final size:112
Alignment explanation
Indices: 15521424--15521781 Score: 316
Period size: 114 Copynumber: 3.1 Consensus size: 112
15521414 AAAAGCTGAT
* * * *
15521424 ATATAGCGGCTTTTTCGGGTAAGCGCCGCTAACGGCGCTATAGCTCAAGACGAAACGTTTCGTTT
1 ATATAGCGGCGTTTTCGAGTAAGCGCCGCT-ACAGCGCTATAGCTCAAGACGAAACGTTGCGTTT
* * *
15521489 CGGTTTAAATTTTTTTAGCATTTTTTAGTTAAGCGCCGCTAATTGAGGG
65 CGGTTTAAA-ATTTTTGGCATTTTTTAGTTAAGCGCCGCTAATTGCGGG
* * * *
15521538 ATATAGCGGCGTTTTC-AGGTAAGCGCCGCTA-ATGC-CTTTATAGGTCAAGCCGGAACGATGCG
1 ATATAGCGGCGTTTTCGA-GTAAGCGCCGCTACA-GCGC--TATAGCTCAAGACGAAACGTTGCG
* * ** * * * * **
15521600 TTTTGG-TCAAAATTTTTGCGGC--GCTTCAGTAGAAGCGCCACTACA-AGCTGAT
62 TTTCGGTTTAAAATTTTT--GGCATTTTTTAGT-TAAGCGCCGCTA-ATTGC-GGG
* * *
15521652 ATATAGCGGCGTTTTCGAGTAAGCGCCACTGACAGCGCTATAGCTCAAGATGAAACGTTGCATTT
1 ATATAGCGGCGTTTTCGAGTAAGCGCCGCT-ACAGCGCTATAGCTCAAGACGAAACGTTGCGTTT
*
15521717 CGGTTTAAAAGTTTCTGGCATTTTTTAGTTAAGCGCCGCTAATTGCGGG
65 CGGTTTAAAA-TTTTTGGCATTTTTTAGTTAAGCGCCGCTAATTGCGGG
*
15521766 ATATAACGGCGTTTTC
1 ATATAGCGGCGTTTTC
15521782 TACAACCGCC
Statistics
Matches: 186, Mismatches: 40, Indels: 36
0.71 0.15 0.14
Matches are distributed among these distances:
112 11 0.06
113 18 0.10
114 125 0.67
115 21 0.11
116 11 0.06
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (112 bp):
ATATAGCGGCGTTTTCGAGTAAGCGCCGCTACAGCGCTATAGCTCAAGACGAAACGTTGCGTTTC
GGTTTAAAATTTTTGGCATTTTTTAGTTAAGCGCCGCTAATTGCGGG
Found at i:15523473 original size:1 final size:1
Alignment explanation
Indices: 15523467--15523498 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
15523457 CCACGAAACC
15523467 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
15523499 TGGAAACTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:15523840 original size:13 final size:13
Alignment explanation
Indices: 15523822--15523898 Score: 68
Period size: 13 Copynumber: 5.9 Consensus size: 13
15523812 AGTTCTTCAT
15523822 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
15523835 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
15523848 TG-TTGTGGAAAAG
1 TGCTT-TTGAAAAG
* * *
15523861 TACTTCTGAGAAG
1 TGCTTTTGAAAAG
15523874 TGCTTTT-AAGAAG
1 TGCTTTTGAA-AAG
*
15523887 TGTTTTTGAAAA
1 TGCTTTTGAAAA
15523899 ATTTGAGTGC
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
12 3 0.06
13 42 0.86
14 4 0.08
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:15528709 original size:36 final size:37
Alignment explanation
Indices: 15528628--15528711 Score: 93
Period size: 36 Copynumber: 2.3 Consensus size: 37
15528618 TATTCTCTGT
* *
15528628 TTTGGTGTGTTCCAGTTGGACTAGCTATTTGGAGCCA
1 TTTGGTGTGTTTCAGATGGACTAGCTATTTGGAGCCA
* * *
15528665 -TTGCTGTGTTTCAGATGGATTAGCTCTTAT-GAG-CA
1 TTTGGTGTGTTTCAGATGGACTAGCTATT-TGGAGCCA
15528700 TTTGGTGTGTTT
1 TTTGGTGTGTTT
15528712 TGGTTGGATT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
35 2 0.05
36 36 0.92
37 1 0.03
ACGTcount: A:0.15, C:0.13, G:0.29, T:0.43
Consensus pattern (37 bp):
TTTGGTGTGTTTCAGATGGACTAGCTATTTGGAGCCA
Found at i:15531420 original size:20 final size:20
Alignment explanation
Indices: 15531393--15531449 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
15531383 ATAAATGGTG
15531393 AAAGGTATCGATACTTTCTT
1 AAAGGTATCGATACTTTCTT
15531413 CAAA-GTATC-ATTACTTTCTT
1 -AAAGGTATCGA-TACTTTCTT
*
15531433 AAAGGTATTGATACTTT
1 AAAGGTATCGATACTTT
15531450 TGACTTGGCA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
19 4 0.12
20 24 0.75
21 4 0.12
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (20 bp):
AAAGGTATCGATACTTTCTT
Found at i:15533403 original size:24 final size:24
Alignment explanation
Indices: 15533375--15533423 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
15533365 GAATTTAGGA
*
15533375 TCCACTTGGACGTAAGTTTAGAGC
1 TCCACTTGGAAGTAAGTTTAGAGC
*
15533399 TCCACTTGGAATTAAGTTTAGAGC
1 TCCACTTGGAAGTAAGTTTAGAGC
15533423 T
1 T
15533424 TTCGCTCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (24 bp):
TCCACTTGGAAGTAAGTTTAGAGC
Found at i:15535193 original size:11 final size:11
Alignment explanation
Indices: 15535177--15535202 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15535167 TACAAGAAAT
15535177 AAATTACTAAG
1 AAATTACTAAG
15535188 AAATTACTAAG
1 AAATTACTAAG
15535199 AAAT
1 AAAT
15535203 AATTCAAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.27
Consensus pattern (11 bp):
AAATTACTAAG
Found at i:15549069 original size:40 final size:41
Alignment explanation
Indices: 15548955--15549069 Score: 110
Period size: 40 Copynumber: 2.8 Consensus size: 41
15548945 AAACACACTT
* * *
15548955 TTAGCGGCGTTTA-GAGAAAAACTGCCACAAAAGGTTACAAC
1 TTAGTGGCGTTTATGAGAAAAAC-GCCGCAAAAGCTTACAAC
* ** * *
15548996 TATAGTGGCGTTTGTGTCAAAAACGCTGGAAAAGCTTAGC-A-
1 T-TAGTGGCGTTTATGAGAAAAACGCCGCAAAAGCTTA-CAAC
15549037 TTAGTGGCGTTTATGAGAAAAACGCCGCAAAAG
1 TTAGTGGCGTTTATGAGAAAAACGCCGCAAAAG
15549070 TTCGAGTATT
Statistics
Matches: 58, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
40 27 0.47
41 2 0.03
42 21 0.36
43 8 0.14
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (41 bp):
TTAGTGGCGTTTATGAGAAAAACGCCGCAAAAGCTTACAAC
Found at i:15549266 original size:114 final size:114
Alignment explanation
Indices: 15549054--15549504 Score: 609
Period size: 114 Copynumber: 4.0 Consensus size: 114
15549044 CGTTTATGAG
* * * * * *
15549054 AAAAACGCCGCAAAAGTTCGAGTATTAGCGACGCTTTTCTAAAAATGCCGCAAAAATG-TAATCA
1 AAAAACGCCGCTATAGGTCGAGAATTAGCGACGCTTTTCTAAAAACGCCACAAAAATGTTAATCA
** * *
15549118 AAACACATCGTTCTATCTTGAGCTTTAGTGGCATTAGCGGCGCTTACAC
66 AAATGCATCGTTCTATCTTGAGCTTTAGTGGCATTAGCGACGCTTATAC
* *
15549167 AAAAACGCCGCTATAGGTCGAGAATTAGCGACGCTTTTTTAAAAACGCTACAAAAATGTTAATCA
1 AAAAACGCCGCTATAGGTCGAGAATTAGCGACGCTTTTCTAAAAACGCCACAAAAATGTTAATCA
*
15549232 AAATGCATCGTTCTATCTTGAGCTTTAGTGGCATTAGCGACGCTTATGC
66 AAATGCATCGTTCTATCTTGAGCTTTAGTGGCATTAGCGACGCTTATAC
* * * *
15549281 AAAAACGCCGCTAGAGGTCGAGAATTAGCGGCGCTCTTCTAAAAATGCCACAAAAATGTTAATCA
1 AAAAACGCCGCTATAGGTCGAGAATTAGCGACGCTTTTCTAAAAACGCCACAAAAATGTTAATCA
* *
15549346 AAATGCATCGTTCTATCTTGAGCTTTAGTGGCATTAACGACGCTTATTC
66 AAATGCATCGTTCTATCTTGAGCTTTAGTGGCATTAGCGACGCTTATAC
* * * * * ** *
15549395 AAAAATGCCACTATATGTCGAGAATTAGC-AGTGCTTTTCTAAAAACGTCGTAAACATGTTAATC
1 AAAAACGCCGCTATAGGTCGAGAATTAGCGA-CGCTTTTCTAAAAACGCCACAAAAATGTTAATC
* * *
15549459 AAAATGCATCGTTCTAGCTTAAGCTTTAGTGGCATTAGCGGCGCTT
65 AAAATGCATCGTTCTATCTTGAGCTTTAGTGGCATTAGCGACGCTT
15549505 TCCGGAAAAT
Statistics
Matches: 299, Mismatches: 37, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
113 50 0.17
114 249 0.83
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (114 bp):
AAAAACGCCGCTATAGGTCGAGAATTAGCGACGCTTTTCTAAAAACGCCACAAAAATGTTAATCA
AAATGCATCGTTCTATCTTGAGCTTTAGTGGCATTAGCGACGCTTATAC
Found at i:15549933 original size:14 final size:14
Alignment explanation
Indices: 15549898--15550088 Score: 81
Period size: 14 Copynumber: 13.4 Consensus size: 14
15549888 TTCCCAAAGA
*
15549898 TATGGTTTA-GGAT
1 TATGGTTTAGGGTT
15549911 TATGGTTTAGGGTT
1 TATGGTTTAGGGTT
* *
15549925 TACGGTTTAGAGTT
1 TATGGTTTAGGGTT
* *
15549939 TAAGGTTT-GTGTTT
1 TATGGTTTAG-GGTT
* *
15549953 TATGGTTTAAGATT
1 TATGGTTTAGGGTT
15549967 TATGGTTTAAGGGTT
1 TATGGTTT-AGGGTT
* **
15549982 T-TGGGTATATTGGGGA
1 TAT-GGT-T-TAGGGTT
*
15549998 T-TGGATTTTGGGTT
1 TATGG-TTTAGGGTT
*
15550012 T-TGGTGGTT-GGTTT
1 TATGGT--TTAGGGTT
* *
15550026 TGTGATTTACGGGTT
1 TATGGTTTA-GGGTT
*
15550041 TAAT-GTTTATGGTT
1 T-ATGGTTTAGGGTT
* *
15550055 TAGGGTTTAGGATT
1 TATGGTTTAGGGTT
*
15550069 TATGGTTTAAGGTT
1 TATGGTTTAGGGTT
15550083 TATGGT
1 TATGGT
15550089 ATATTGGGGA
Statistics
Matches: 135, Mismatches: 28, Indels: 29
0.70 0.15 0.15
Matches are distributed among these distances:
13 14 0.10
14 87 0.64
15 25 0.19
16 8 0.06
17 1 0.01
ACGTcount: A:0.17, C:0.01, G:0.32, T:0.49
Consensus pattern (14 bp):
TATGGTTTAGGGTT
Found at i:15549975 original size:21 final size:21
Alignment explanation
Indices: 15549901--15549975 Score: 73
Period size: 21 Copynumber: 3.6 Consensus size: 21
15549891 CCAAAGATAT
* *
15549901 GGTTTA-GGATTATGGTTTAG
1 GGTTTATGGTTTATGGTTTAA
*
15549921 GGTTTACGGTTTA-GAGTTTAA
1 GGTTTATGGTTTATG-GTTTAA
* *
15549942 GGTTTGTGTTTTATGGTTTAA
1 GGTTTATGGTTTATGGTTTAA
*
15549963 GATTTATGGTTTA
1 GGTTTATGGTTTA
15549976 AGGGTTTTGG
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
20 7 0.16
21 36 0.82
22 1 0.02
ACGTcount: A:0.20, C:0.01, G:0.29, T:0.49
Consensus pattern (21 bp):
GGTTTATGGTTTATGGTTTAA
Found at i:15550022 original size:21 final size:22
Alignment explanation
Indices: 15549978--15550027 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 22
15549968 ATGGTTTAAG
15549978 GGTTTTGGGTATATTGGGGATT
1 GGTTTTGGGTATATTGGGGATT
15550000 GGATTTTGGGT-T-TTGGTGG-TT
1 GG-TTTTGGGTATATTGG-GGATT
15550021 GGTTTTG
1 GGTTTTG
15550028 TGATTTACGG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 5 0.19
21 8 0.31
22 5 0.19
23 8 0.31
ACGTcount: A:0.08, C:0.00, G:0.42, T:0.50
Consensus pattern (22 bp):
GGTTTTGGGTATATTGGGGATT
Found at i:15550055 original size:7 final size:7
Alignment explanation
Indices: 15550045--15550088 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
15550035 CGGGTTTAAT
15550045 GTTTATG
1 GTTTATG
*
15550052 GTTTAGG
1 GTTTATG
15550059 GTTTA-G
1 GTTTATG
15550065 GATTTATG
1 G-TTTATG
*
15550073 GTTTAAG
1 GTTTATG
15550080 GTTTATG
1 GTTTATG
15550087 GT
1 GT
15550089 ATATTGGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
6 2 0.06
7 28 0.88
8 2 0.06
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (7 bp):
GTTTATG
Found at i:15550060 original size:21 final size:22
Alignment explanation
Indices: 15550031--15550084 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
15550021 GGTTTTGTGA
*
15550031 TTTACGGGTTTAATG-TTTATGG
1 TTTA-GGGTTTAAGGATTTATGG
15550053 TTTAGGGTTT-AGGATTTATGG
1 TTTAGGGTTTAAGGATTTATGG
*
15550074 TTTAAGGTTTA
1 TTTAGGGTTTA
15550085 TGGTATATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 2 0.07
21 22 0.79
22 4 0.14
ACGTcount: A:0.20, C:0.02, G:0.28, T:0.50
Consensus pattern (22 bp):
TTTAGGGTTTAAGGATTTATGG
Found at i:15550113 original size:102 final size:101
Alignment explanation
Indices: 15549930--15550151 Score: 315
Period size: 102 Copynumber: 2.2 Consensus size: 101
15549920 GGGTTTACGG
* * * *
15549930 TTTAGAGTTTAAGGTTTGTGTTTTATGGTTTAAGATTTATGGTTTAAGGGTTTTGGGTATATTGG
1 TTTAGGGTTTAAGGTTTATGGTTTAGGGTTTAAGATTTATGGTTTAAGGGTTTTGGGTATATTGG
15549995 GGATTGGATTTTGGGTTTTGGTGGTTGG-TTTTGTGA
66 GGATTGGATTTTGGG-TTTGGTGGTTGGTTTTTGTGA
* *
15550031 TTTACGGGTTTAATGTTTATGGTTTAGGGTTTAGGATTTATGGTTTAA-GGTTTAT-GGTATATT
1 TTTA-GGGTTTAAGGTTTATGGTTTAGGGTTTAAGATTTATGGTTTAAGGGTTT-TGGGTATATT
*
15550094 GGGGATTGGATTTTAGGGTTTGGTGGTTGGTTTTTTGTGG
64 GGGGATTGGATTTT-GGGTTTGGTGGTTGG-TTTTTGTGA
15550134 TTTAGGGTTTAAGGTTTA
1 TTTAGGGTTTAAGGTTTA
15550152 GGATTTAATC
Statistics
Matches: 108, Mismatches: 8, Indels: 9
0.86 0.06 0.07
Matches are distributed among these distances:
101 43 0.40
102 54 0.50
103 11 0.10
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.50
Consensus pattern (101 bp):
TTTAGGGTTTAAGGTTTATGGTTTAGGGTTTAAGATTTATGGTTTAAGGGTTTTGGGTATATTGG
GGATTGGATTTTGGGTTTGGTGGTTGGTTTTTGTGA
Found at i:15551345 original size:27 final size:27
Alignment explanation
Indices: 15551315--15551384 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
15551305 TTTGGTACTG
15551315 GCATACTATTTTATGTATTTCCCATAT
1 GCATACTATTTTATGTATTTCCCATAT
15551342 GCATAC-AGTTTTAAT-TATTTCCCATAT
1 GCATACTA-TTTT-ATGTATTTCCCATAT
*
15551369 GCATACTGTTTTATGT
1 GCATACTATTTTATGT
15551385 TTAAATATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
26 3 0.08
27 33 0.87
28 2 0.05
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (27 bp):
GCATACTATTTTATGTATTTCCCATAT
Found at i:15555225 original size:13 final size:14
Alignment explanation
Indices: 15555209--15555237 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15555199 TTATAAATAT
15555209 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
15555222 TTATAATGGTTTAA
1 TTATAATGGTTTAA
15555236 TT
1 TT
15555238 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:15556008 original size:44 final size:43
Alignment explanation
Indices: 15555908--15556150 Score: 195
Period size: 43 Copynumber: 5.6 Consensus size: 43
15555898 CCAAATTAGC
* *
15555908 GGCGTTTGTA-AAAAAAGCACCGCTAAAGACCACGAATTATAGT
1 GGCGTTT-TATAAAAAAGCGCCGCTAAAGGCCACGAATTATAGT
* * *
15555951 GGCGTTTTATAAAAAAGTGCTGCTAAAGGCCACGAATTATAGC
1 GGCGTTTTATAAAAAAGCGCCGCTAAAGGCCACGAATTATAGT
* * * * *
15555994 AGCGTTTTTTTAAAAAAGCACCGCTAAAGGCCATGACTTATAGT
1 GGCG-TTTTATAAAAAAGCGCCGCTAAAGGCCACGAATTATAGT
* * * *
15556038 GGAGTTTTATAAAAAAGCGCCGTTAAAGGCCACGGCATT-TAGC
1 GGCGTTTTATAAAAAAGCGCCGCTAAAGGCCAC-GAATTATAGT
* * ** * * * * *
15556081 GGCATTTTCTATGATAGCACCGCTAAAGACCACGACCTT-TAGC
1 GGCGTTTTATAAAAAAGCGCCGCTAAAGGCCACGA-ATTATAGT
* * *
15556124 GGCATTTTCTATAAAAGCGCCGCTAAA
1 GGCGTTTTATAAAAAAGCGCCGCTAAA
15556151 AGTCAAGATC
Statistics
Matches: 160, Mismatches: 36, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
42 3 0.02
43 120 0.75
44 37 0.23
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (43 bp):
GGCGTTTTATAAAAAAGCGCCGCTAAAGGCCACGAATTATAGT
Found at i:15556020 original size:87 final size:86
Alignment explanation
Indices: 15555918--15556150 Score: 247
Period size: 87 Copynumber: 2.7 Consensus size: 86
15555908 GGCGTTTGTA
* * *
15555918 AAAAAAGCACCGCTAAAGACCACGAATTATAGTGGCGTTTTATAAAAAAGTGCTGCTAAAGGCCA
1 AAAAAAGCACCGCTAAAGACCACGAATTATAGTGGAGTTTTATAAAAAAGCGCCGCTAAAGGCCA
* *
15555983 C-GAATTATAGCAGCGTTTTTTT
66 CGGAATT-TAGCAGC-ATTTTCT
* * * *
15556005 AAAAAAGCACCGCTAAAGGCCATGACTTATAGTGGAGTTTTATAAAAAAGCGCCGTTAAAGGCCA
1 AAAAAAGCACCGCTAAAGACCACGAATTATAGTGGAGTTTTATAAAAAAGCGCCGCTAAAGGCCA
* *
15556070 CGGCATTTAGCGGCATTTTCT
66 CGGAATTTAGCAGCATTTTCT
** * * * * *
15556091 ATGATAGCACCGCTAAAGACCACGACCTT-TAGCGGCA-TTTTCTATAAAAGCGCCGCTAAA
1 AAAAAAGCACCGCTAAAGACCACGA-ATTATAGTGG-AGTTTTATAAAAAAGCGCCGCTAAA
15556151 AGTCAAGATC
Statistics
Matches: 123, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
86 50 0.41
87 69 0.56
88 4 0.03
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (86 bp):
AAAAAAGCACCGCTAAAGACCACGAATTATAGTGGAGTTTTATAAAAAAGCGCCGCTAAAGGCCA
CGGAATTTAGCAGCATTTTCT
Found at i:15556164 original size:43 final size:43
Alignment explanation
Indices: 15556007--15556174 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 43
15555997 GTTTTTTTAA
* * * * *
15556007 AAAAGCACCGCTAAAGGCCATGA-CTTATAGTGG-AGTTTTATAA
1 AAAAGCACCGCTAAAGACCAAGACCTT-TAGCGGCA-TTTTCTAT
* * * * * *
15556050 AAAAGCGCCGTTAAAGGCCACGGCATTTAGCGGCATTTTCTAT
1 AAAAGCACCGCTAAAGACCAAGACCTTTAGCGGCATTTTCTAT
* * *
15556093 GATAGCACCGCTAAAGACCACGACCTTTAGCGGCATTTTCTAT
1 AAAAGCACCGCTAAAGACCAAGACCTTTAGCGGCATTTTCTAT
* * *
15556136 AAAAGCGCCGCTAAA-AGTCAAGATCTTTAGCGGCATTTT
1 AAAAGCACCGCTAAAGA-CCAAGACCTTTAGCGGCATTTT
15556175 TTTCAAAGAA
Statistics
Matches: 101, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 1 0.01
43 97 0.96
44 3 0.03
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (43 bp):
AAAAGCACCGCTAAAGACCAAGACCTTTAGCGGCATTTTCTAT
Found at i:15556210 original size:35 final size:35
Alignment explanation
Indices: 15556161--15556239 Score: 122
Period size: 35 Copynumber: 2.3 Consensus size: 35
15556151 AGTCAAGATC
*
15556161 TTTAGCGGCATTTTTTTCAAAGAAACGCCGCAAGT
1 TTTAGCGGCATTTTTTTCAAAGAAACACCGCAAGT
** *
15556196 TTTAGCGGTGTTTTTTTCAAATAAACACCGCAAGT
1 TTTAGCGGCATTTTTTTCAAAGAAACACCGCAAGT
15556231 TTTAGCGGC
1 TTTAGCGGC
15556240 CTTGTCTATA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (35 bp):
TTTAGCGGCATTTTTTTCAAAGAAACACCGCAAGT
Found at i:15584504 original size:27 final size:27
Alignment explanation
Indices: 15584470--15584535 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
15584460 TACAACATAT
15584470 AGTCATTTTATAACATAGGGGCATAAC
1 AGTCATTTTATAACATAGGGGCATAAC
** * *
15584497 AGTCATTTTACCACGTGGGGGCATAAC
1 AGTCATTTTATAACATAGGGGCATAAC
*
15584524 AATCATTTTATA
1 AGTCATTTTATA
15584536 TCTACTTGGG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (27 bp):
AGTCATTTTATAACATAGGGGCATAAC
Found at i:15588821 original size:22 final size:22
Alignment explanation
Indices: 15588795--15588836 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
15588785 TTTGAATAAT
*
15588795 TAAATAAATTGAAT-AATAAACC
1 TAAAT-AATTCAATAAATAAACC
15588817 TAAATAATTCAATAAATAAA
1 TAAATAATTCAATAAATAAA
15588837 AACTGAGCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (22 bp):
TAAATAATTCAATAAATAAACC
Found at i:15593476 original size:14 final size:13
Alignment explanation
Indices: 15593453--15593494 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
15593443 TAATCTTTGA
15593453 TTTATTATTTTAT
1 TTTATTATTTTAT
15593466 TTTAGTTA-TTTAT
1 TTTA-TTATTTTAT
*
15593479 TTTAATTGTTTTAT
1 TTT-ATTATTTTAT
15593493 TT
1 TT
15593495 GACTTGGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (13 bp):
TTTATTATTTTAT
Found at i:15593867 original size:17 final size:17
Alignment explanation
Indices: 15593847--15593885 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
15593837 AAAAACGTAC
*
15593847 AAAAAATAAAATACAAA
1 AAAAAATAAAAAACAAA
* *
15593864 AAAAACTAAAAAATAAA
1 AAAAAATAAAAAACAAA
15593881 AAAAA
1 AAAAA
15593886 TTTGGGTTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.85, C:0.05, G:0.00, T:0.10
Consensus pattern (17 bp):
AAAAAATAAAAAACAAA
Found at i:15596518 original size:72 final size:72
Alignment explanation
Indices: 15596428--15596572 Score: 227
Period size: 72 Copynumber: 2.0 Consensus size: 72
15596418 TCAAGGAGAG
* *
15596428 ATACTTGGTCCATACTGATTTGGGATATCAAAATAATATATTTGATCCTGGAGATACTTTTGGCG
1 ATACTTGATCCATACTGATTTGGGATATCAAAATAATATATTTGATCCTAGAGATACTTTTGGCG
*
15596493 CAGAAGA
66 CACAAGA
* * * *
15596500 ATACTTGATCCATACTGATTTGGGATATCAAAATCATATCTTTGATCCTAGAGATAGTTTTGGTG
1 ATACTTGATCCATACTGATTTGGGATATCAAAATAATATATTTGATCCTAGAGATACTTTTGGCG
15596565 CACAAGA
66 CACAAGA
15596572 A
1 A
15596573 AGAATAGGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.34
Consensus pattern (72 bp):
ATACTTGATCCATACTGATTTGGGATATCAAAATAATATATTTGATCCTAGAGATACTTTTGGCG
CACAAGA
Found at i:15598458 original size:32 final size:32
Alignment explanation
Indices: 15598417--15598480 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
15598407 AGAAACTAGA
15598417 ATTAATAAGCTTTAATTCAATTGCTTTTTCAT
1 ATTAATAAGCTTTAATTCAATTGCTTTTTCAT
15598449 ATTAATAAGCTTTAATTCAATTGCTTTTTCAT
1 ATTAATAAGCTTTAATTCAATTGCTTTTTCAT
15598481 TCTCTAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.50
Consensus pattern (32 bp):
ATTAATAAGCTTTAATTCAATTGCTTTTTCAT
Found at i:15604646 original size:51 final size:48
Alignment explanation
Indices: 15604588--15604774 Score: 212
Period size: 51 Copynumber: 3.7 Consensus size: 48
15604578 CCAATTCACA
*
15604588 TAGTAGCCTGCACATAGTACTACACATGTGACCTTTCTCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC--TCT-ATCCGGTACACG
* ** * * *
15604639 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-C--CTCTATCCGGTACACG
* *
15604690 TAGTAGCCTGCACATAGTACTACACATGCGACCTATGATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTCT-A-TCCGGTACACG
*
15604740 TAGTAGCCTGCACATAGTACTACACATGTGGCCTC
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTC
15604775 GCAACTTCAC
Statistics
Matches: 113, Mismatches: 18, Indels: 11
0.80 0.13 0.08
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 41 0.36
51 67 0.59
52 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (48 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCTCTATCCGGTACACG
Found at i:15605836 original size:27 final size:27
Alignment explanation
Indices: 15605806--15606115 Score: 324
Period size: 27 Copynumber: 11.5 Consensus size: 27
15605796 CTAAAATCGG
*
15605806 GATGGGTAAAATTACTGAAATACACTC
1 GATGGGTAAAATTACTGAAATACCCTC
15605833 GATGGGTAAAATTACTGAAATACCCTC
1 GATGGGTAAAATTACTGAAATACCCTC
* *
15605860 AATGGGTAAAATTAAC-GAAATAACCTC
1 GATGGGTAAAATT-ACTGAAATACCCTC
* * *
15605887 GATGGGTAAAATTACCGGAATACCCGC
1 GATGGGTAAAATTACTGAAATACCCTC
* * *
15605914 AATAGGTAAAATTACTAAAATACCCTC
1 GATGGGTAAAATTACTGAAATACCCTC
* *
15605941 GAAT-GGTAAAATTTCTAAAATACCCTC
1 G-ATGGGTAAAATTACTGAAATACCCTC
* * *
15605968 AATGGTTAAAATTA-TCGTAATACCC-C
1 GATGGGTAAAATTACT-GAAATACCCTC
*
15605994 TGATGGGTAAAATTA-TCGAAATACCCTT
1 -GATGGGTAAAATTACT-GAAATACCCTC
** *
15606022 GATGGGTAAAATTACCAAAATACCCTT
1 GATGGGTAAAATTACTGAAATACCCTC
* * *
15606049 GAAGGGTAAAATTACTGAAATACGCTT
1 GATGGGTAAAATTACTGAAATACCCTC
* *
15606076 GATGGGTAAAATTATTGAAATACCCTT
1 GATGGGTAAAATTACTGAAATACCCTC
*
15606103 GATGGGTTAAATT
1 GATGGGTAAAATT
15606116 GAGTGCTAGG
Statistics
Matches: 241, Mismatches: 34, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.02
27 231 0.96
28 4 0.02
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (27 bp):
GATGGGTAAAATTACTGAAATACCCTC
Found at i:15606281 original size:29 final size:27
Alignment explanation
Indices: 15606239--15606324 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
15606229 AGTATTGTTT
*
15606239 CTGGTGGCTCTGCCACACACATACTGATA
1 CTGGTGGCTATGCCACA-A-ATACTGATA
* *
15606268 CTGGTGGCTATGCCACAATTACTGTTA
1 CTGGTGGCTATGCCACAAATACTGATA
* *
15606295 CTGGTGGCTTTGCCACATATACT-ATA
1 CTGGTGGCTATGCCACAAATACTGATA
15606321 CTGG
1 CTGG
15606325 CAGCTCTGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.12
27 27 0.54
28 1 0.02
29 16 0.32
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAAATACTGATA
Found at i:15606368 original size:26 final size:26
Alignment explanation
Indices: 15606319--15606368 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
15606309 ACATATACTA
* **
15606319 TACTGGCAGCTCTGCTGCGTTATTAT
1 TACTGGCAGCTATGCTGCAATATTAT
15606345 TACTGGCAGCTATGCTGCAATATT
1 TACTGGCAGCTATGCTGCAATATT
15606369 TGTGTGTGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
TACTGGCAGCTATGCTGCAATATTAT
Found at i:15606517 original size:28 final size:28
Alignment explanation
Indices: 15606468--15606524 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
15606458 CATACTTGGA
* *
15606468 CCATACTGATACTGTATCGGGCTTAGGC
1 CCATACTGATACTATATCGGGCTAAGGC
* *
15606496 CCATACTGATTCTATATTGGGCTAAGGC
1 CCATACTGATACTATATCGGGCTAAGGC
15606524 C
1 C
15606525 ACACTGCACT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (28 bp):
CCATACTGATACTATATCGGGCTAAGGC
Found at i:15607353 original size:11 final size:11
Alignment explanation
Indices: 15607327--15607359 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
15607317 AATATTGTAT
*
15607327 TTATTATCTT-
1 TTATTATTTTA
15607337 TTATTATTTTA
1 TTATTATTTTA
15607348 TTATTATTTTA
1 TTATTATTTTA
15607359 T
1 T
15607360 ATCAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:15617910 original size:27 final size:27
Alignment explanation
Indices: 15616733--15617898 Score: 1367
Period size: 27 Copynumber: 43.4 Consensus size: 27
15616723 CTCCAAAATA
* *
15616733 GGTAAAATGACCAAAATACCCCAATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
15616760 GGTAAAATGACCAAAATATCCCTATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* *
15616787 GATAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
15616814 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * **
15616841 GATAAAATGACTGAAATACCCTTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
15616868 GGTAAACTAACCAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
15616895 GGTAAAATAACTGAAATAGCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* ** *
15616922 GGTAGAATGGTCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
15616949 TGT--AATGACCAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
15616974 GGTAAAATCACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
15617001 GGTAGAATGACCGAAATAACCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
15617028 GGTAGAATGATCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
15617055 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
15617082 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
15617109 GGTAGAATGACCGAAATAACCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
15617136 GGTAGAATGATCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
15617163 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
15617190 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
15617217 GGTAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
15617244 GGTAGAACGACTGAAATA-CCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
15617270 GGTAAAATGATCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
15617297 GATAAAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
15617324 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* **
15617351 GGTAAAATGACTGAAATACCCTTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
15617378 GATAAAATGGCTGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
*
15617405 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
15617432 GGTAGAACGACTGAAATA-CCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
15617458 GGTAAAATGATCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
15617485 GGTAGAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
** *
15617512 GGTAAAATGACCGAAATACCCTTATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* * **
15617539 GGTAAAATGACTGAAATACACTTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
15617566 GATAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
15617593 GGTAAAATAACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
15617620 GGTAGAACGACTGAAATA-CCCCATTG
1 GGTAAAATGACCGAAATACCCCCATAG
*
15617646 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
15617673 GGTAAAATGACCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
** *
15617700 GGTAAAATGATTGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
15617727 GATAAAATGACC-AAATTACCCCCATAG
1 GGTAAAATGACCGAAA-TACCCCCATAG
* * * *
15617754 GGTAGAATGATCGAAGTACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
15617781 GGTGAAATGACC-AAGATGCCCCCATAG
1 GGTAAAATGACCGAA-ATACCCCCATAG
* * *
15617808 GGAAAAATGATCGAATTACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
15617835 GGTAAAATGACCAAAATGCCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
15617862 GGTAAAATGACC-AAGATGCCCCCATAG
1 GGTAAAATGACCGAA-ATACCCCCATAG
15617889 GGTAAAATGA
1 GGTAAAATGA
15617899 TTGTTATACC
Statistics
Matches: 975, Mismatches: 154, Indels: 20
0.85 0.13 0.02
Matches are distributed among these distances:
25 20 0.02
26 72 0.07
27 879 0.90
28 4 0.00
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAG
Found at i:15623563 original size:12 final size:12
Alignment explanation
Indices: 15623529--15623563 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
15623519 AGACACAACC
* *
15623529 GTGTGGAAGGCT
1 GTGTGAAAGGTT
15623541 GTGTGAAAGGTT
1 GTGTGAAAGGTT
15623553 GTGTGAAAGGT
1 GTGTGAAAGGT
15623564 CCTAGGCCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.23, C:0.03, G:0.46, T:0.29
Consensus pattern (12 bp):
GTGTGAAAGGTT
Found at i:15630140 original size:27 final size:27
Alignment explanation
Indices: 15630031--15630149 Score: 150
Period size: 27 Copynumber: 4.4 Consensus size: 27
15630021 ATTTGTTCCT
*
15630031 TGTAGGGTAAAATGACCGTAATGCCCC
1 TGTAGGGTAAAATGATCGTAATGCCCC
* *
15630058 TATAGGGTAAAATGATCCTAATGCCCC
1 TGTAGGGTAAAATGATCGTAATGCCCC
* * ** *
15630085 TATAGGGTAAAATGATCGGAACACTCC
1 TGTAGGGTAAAATGATCGTAATGCCCC
15630112 TGTAGGGTAAAATGATCGTAATGCCCC
1 TGTAGGGTAAAATGATCGTAATGCCCC
15630139 TGGT-GGGTAAA
1 T-GTAGGGTAAA
15630150 TGACTATTTT
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 76 0.97
28 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.24
Consensus pattern (27 bp):
TGTAGGGTAAAATGATCGTAATGCCCC
Found at i:15630197 original size:23 final size:23
Alignment explanation
Indices: 15630170--15630240 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 23
15630160 TGCCCCTCGA
* *
15630170 GGTTAAATGATTGTTTTGTCTGT
1 GGTTAAATGACTGATTTGTCTGT
15630193 GGTTAAATGACTGATTTGTCTGT
1 GGTTAAATGACTGATTTGTCTGT
* **
15630216 GTTTGGTATGACTGATTTGTCTGT
1 GGTT-AAATGACTGATTTGTCTGT
15630240 G
1 G
15630241 ATTTGAATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 24 0.57
24 18 0.43
ACGTcount: A:0.17, C:0.07, G:0.28, T:0.48
Consensus pattern (23 bp):
GGTTAAATGACTGATTTGTCTGT
Found at i:15630250 original size:24 final size:23
Alignment explanation
Indices: 15630175--15630252 Score: 93
Period size: 24 Copynumber: 3.3 Consensus size: 23
15630165 CTCGAGGTTA
* * * *
15630175 AATGATTGTTTTGTCTGTGGTTA
1 AATGACTGATTTGTCTGTGTTTG
15630198 AATGACTGATTTGTCTGTGTTTGG
1 AATGACTGATTTGTCTGTGTTT-G
*
15630222 TATGACTGATTTGTCTGTGATTTG
1 AATGACTGATTTGTCTGTG-TTTG
15630246 AATGACT
1 AATGACT
15630253 AATTCTGAGC
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
23 19 0.40
24 25 0.53
25 3 0.06
ACGTcount: A:0.19, C:0.08, G:0.26, T:0.47
Consensus pattern (23 bp):
AATGACTGATTTGTCTGTGTTTG
Found at i:15630468 original size:32 final size:32
Alignment explanation
Indices: 15630416--15630533 Score: 112
Period size: 32 Copynumber: 3.7 Consensus size: 32
15630406 GCGATGCTAC
**
15630416 TGATGGCTTTGTGCTAATCATAGTACCATTAT
1 TGATGGCTTTGTGCCGATCATAGTACCATTAT
* * * * *
15630448 TGATGGATTTGTCCCGATCATATTACCACTAC
1 TGATGGCTTTGTGCCGATCATAGTACCATTAT
* * * * *
15630480 CGATGGCTGTGTGCCGGTAAT-GTTACCGTTAT
1 TGATGGCTTTGTGCCGATCATAG-TACCATTAT
15630512 TGATGGCTTTGTGCCGATCATA
1 TGATGGCTTTGTGCCGATCATA
15630534 TCACTGCTAC
Statistics
Matches: 63, Mismatches: 21, Indels: 3
0.72 0.24 0.03
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATAGTACCATTAT
Found at i:15630557 original size:64 final size:64
Alignment explanation
Indices: 15630439--15630558 Score: 159
Period size: 64 Copynumber: 1.9 Consensus size: 64
15630429 CTAATCATAG
* *
15630439 TACCATTATTGATGGATTTGTCCCGATCATATTACCACTACCGATGGCTGTGTGCCGGTAATGT
1 TACCATTATTGATGGATTTGTCCCGATCATATCACCACTACCGATAGCTGTGTGCCGGTAATGT
* * * ** * *
15630503 TACCGTTATTGATGGCTTTGTGCCGATCATATCACTGCTACTGATAGCTTTGTGCC
1 TACCATTATTGATGGATTTGTCCCGATCATATCACCACTACCGATAGCTGTGTGCC
15630559 AATGACATTA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 47 1.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (64 bp):
TACCATTATTGATGGATTTGTCCCGATCATATCACCACTACCGATAGCTGTGTGCCGGTAATGT
Found at i:15630600 original size:22 final size:21
Alignment explanation
Indices: 15630575--15630638 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
15630565 ATTACTGTAC
15630575 TTATGGCTTGTAGCCATTCTGT
1 TTATGGCTT-TAGCCATTCTGT
* * * *
15630597 TTATAGCTTATAACTATCCTGT
1 TTATGGCTT-TAGCCATTCTGT
15630619 TTATGGCTCTTAGCCATTCT
1 TTATGGCT-TTAGCCATTCT
15630639 AATTACTGGC
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.45
Consensus pattern (21 bp):
TTATGGCTTTAGCCATTCTGT
Found at i:15630662 original size:26 final size:26
Alignment explanation
Indices: 15630633--15630685 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
15630623 GGCTCTTAGC
* * *
15630633 CATTCTAATTACTGGCAGCTCTGCTG
1 CATTATAACTACTGGCAGCTATGCTG
* *
15630659 CATTATTACTACTGGTAGCTATGCTG
1 CATTATAACTACTGGCAGCTATGCTG
15630685 C
1 C
15630686 GATATTGGTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (26 bp):
CATTATAACTACTGGCAGCTATGCTG
Found at i:15636520 original size:26 final size:26
Alignment explanation
Indices: 15636484--15636538 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
15636474 CAGCACCGAC
15636484 CCGCTTACAACTGGAGATTACCTGTA
1 CCGCTTACAACTGGAGATTACCTGTA
15636510 CCGCTTACAACTGGAGATTACCTGTA
1 CCGCTTACAACTGGAGATTACCTGTA
15636536 CCG
1 CCG
15636539 TTAAATATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
CCGCTTACAACTGGAGATTACCTGTA
Found at i:15636786 original size:27 final size:26
Alignment explanation
Indices: 15636734--15636812 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
15636724 ACATAAGGCC
*
15636734 ATAACAGTCATTTCATCTCCTA-GGGGT
1 ATAACAGTCATTTTA-C-CCTATGGGGT
15636761 ATAACAGTCATTTTACCCTATTGGGGT
1 ATAACAGTCATTTTACCCTA-TGGGGT
* * *
15636788 A-ATTCGGTCATTTTACCCTGTGGGG
1 ATA-ACAGTCATTTTACCCTATGGGG
15636813 GTAATTCGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
25 4 0.09
26 7 0.16
27 34 0.76
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (26 bp):
ATAACAGTCATTTTACCCTATGGGGT
Found at i:15636813 original size:27 final size:27
Alignment explanation
Indices: 15636768--15637018 Score: 364
Period size: 27 Copynumber: 9.2 Consensus size: 27
15636758 GGTATAACAG
* * *
15636768 TCATTTTACCCTATTGGGGTAATTCGG
1 TCATTTTACCCTGTGGGGGTAATTCGA
15636795 TCATTTTACCCTGTGGGGGTAATTCGA
1 TCATTTTACCCTGTGGGGGTAATTCGA
*
15636822 TTATTTTACCCTGTGGGGGTAATTCGA
1 TCATTTTACCCTGTGGGGGTAATTCGA
*
15636849 TCATTTTACCCTGTGGTGGTAATTCGA
1 TCATTTTACCCTGTGGGGGTAATTCGA
15636876 TCATTTTACCCTGTGGGGGTAATTTC-A
1 TCATTTTACCCTGTGGGGGTAA-TTCGA
15636903 TCATTTTACCCTGTGGGGGGTTAATTC-A
1 TCATTTTACCCTGT-GGGGG-TAATTCGA
15636931 GTCATTTTACCCTGTGGGGGTAATTCGA
1 -TCATTTTACCCTGTGGGGGTAATTCGA
* *
15636959 TCATTTTACCCTATGGGGGTAATT-TA
1 TCATTTTACCCTGTGGGGGTAATTCGA
*
15636985 GTCATTTTACCCTGTGGGGCTAATTCGA
1 -TCATTTTACCCTGTGGGGGTAATTCGA
15637013 TCATTT
1 TCATTT
15637019 ATTAACCTCT
Statistics
Matches: 205, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
26 1 0.00
27 168 0.82
28 19 0.09
29 17 0.08
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.40
Consensus pattern (27 bp):
TCATTTTACCCTGTGGGGGTAATTCGA
Found at i:15636967 original size:83 final size:82
Alignment explanation
Indices: 15636765--15637003 Score: 360
Period size: 83 Copynumber: 2.9 Consensus size: 82
15636755 AGGGGTATAA
* * * *
15636765 CAGTCATTTTACCCTATTGGGGTAATTCGGTCATTTTACCCTGTGGGGGTAA-TTCGATTATTTT
1 CAGTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCTGTGGGGGTAATTTC-ATCATTTT
15636829 ACCCTGT-GGGGGTAATT
65 ACCCTGTGGGGGGTAATT
*
15636846 C-GATCATTTTACCCTGTGGTGGTAATTCGATCATTTTACCCTGTGGGGGTAATTTCATCATTTT
1 CAG-TCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCTGTGGGGGTAATTTCATCATTTT
15636910 ACCCTGTGGGGGGTTAATT
65 ACCCTGTGGGGGG-TAATT
*
15636929 CAGTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCTATGGGGGTAATTT-AGTCATTTT
1 CAGTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCTGTGGGGGTAATTTCA-TCATTTT
15636993 ACCCTGTGGGG
65 ACCCTGTGGGG
15637004 CTAATTCGAT
Statistics
Matches: 145, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
80 1 0.01
81 60 0.41
82 9 0.06
83 74 0.51
84 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.39
Consensus pattern (82 bp):
CAGTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCTGTGGGGGTAATTTCATCATTTTA
CCCTGTGGGGGGTAATT
Found at i:15636990 original size:137 final size:135
Alignment explanation
Indices: 15636768--15637018 Score: 398
Period size: 137 Copynumber: 1.8 Consensus size: 135
15636758 GGTATAACAG
* * *
15636768 TCATTTTACCCTATTGGGGTAATTCGGTCATTTTACCCTGTGGGGGTAATTCGATTATTTTACCC
1 TCATTTTACCCTATGGGGGTAATTCAGTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCC
* *
15636833 TGTGGGGGTAATTCGATCATTTTACCCTGTGGTGG-TAATTCGATCATTTTACCCTGTGGGGGTA
66 TATGGGGGTAATTAGATCATTTTACCCTGTGG-GGCTAATTCGATCATTTTACCCTGTGGGGGTA
15636897 ATTTCA
130 ATTTCA
*
15636903 TCATTTTACCCTGTGGGGGGTTAATTCAGTCATTTTACCCTGTGGGGGTAATTCGATCATTTTAC
1 TCATTTTACCCTAT-GGGGG-TAATTCAGTCATTTTACCCTGTGGGGGTAATTCGATCATTTTAC
15636968 CCTATGGGGGTAATTTAG-TCATTTTACCCTGTGGGGCTAATTCGATCATTT
64 CCTATGGGGGTAA-TTAGATCATTTTACCCTGTGGGGCTAATTCGATCATTT
15637019 ATTAACCTCT
Statistics
Matches: 106, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
135 13 0.12
136 6 0.06
137 84 0.79
138 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.40
Consensus pattern (135 bp):
TCATTTTACCCTATGGGGGTAATTCAGTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCC
TATGGGGGTAATTAGATCATTTTACCCTGTGGGGCTAATTCGATCATTTTACCCTGTGGGGGTAA
TTTCA
Found at i:15637624 original size:24 final size:24
Alignment explanation
Indices: 15637599--15637645 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
15637589 CCCAAATCCC
*
15637599 AATATTCTCTCCTCAAATCTCTCCA
1 AATATCCT-TCCTCAAATCTCTCCA
*
15637624 AATATCCTTCCTCAATTCTCTC
1 AATATCCTTCCTCAAATCTCTC
15637646 TATGATCAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.26, C:0.36, G:0.00, T:0.38
Consensus pattern (24 bp):
AATATCCTTCCTCAAATCTCTCCA
Found at i:15639728 original size:28 final size:29
Alignment explanation
Indices: 15639675--15639734 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
15639665 GTATCAGTAT
* *
15639675 AGTGTGGTCCATAGCCCAATACAGTAA-C
1 AGTGTGGGCCATAGCCCAAAACAGTAATC
* *
15639703 AGTGTGGGCCTTAGCCCAAAATAGTAATC
1 AGTGTGGGCCATAGCCCAAAACAGTAATC
15639732 AGT
1 AGT
15639735 ACAAATCCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 23 0.85
29 4 0.15
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (29 bp):
AGTGTGGGCCATAGCCCAAAACAGTAATC
Found at i:15640334 original size:27 final size:27
Alignment explanation
Indices: 15640121--15640354 Score: 260
Period size: 27 Copynumber: 8.7 Consensus size: 27
15640111 TATGCTATAG
*
15640121 GGGTATTTCGATCATTTTACCCTTTCG-
1 GGGTATTTCGATAATTTTACCC-TTCGA
* * * *
15640148 GAGTATTTCAATAATTTTATCCTTCTA
1 GGGTATTTCGATAATTTTACCCTTCGA
*
15640175 GGGTATTTCGATAATTTTACCTTTC-A
1 GGGTATTTCGATAATTTTACCCTTCGA
* **
15640201 GGGGTATTTTGATAATTTTACCCTTTAA
1 -GGGTATTTCGATAATTTTACCCTTCGA
*
15640229 GGTTATTTC-ATTAATTTTACCCTTCGA
1 GGGTATTTCGA-TAATTTTACCCTTCGA
*
15640256 GGGTATTT-AAGTAATTTTACCCTTCGA
1 GGGTATTTCGA-TAATTTTACCCTTCGA
15640283 GGGTATTTCGATAATTTTACCCTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* *
15640310 GGGTAATTCGGTAATTTTACCCTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* * *
15640337 CGTTATTTCGATTATTTT
1 GGGTATTTCGATAATTTT
15640355 TTGGCCCAAG
Statistics
Matches: 175, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.03
27 168 0.96
28 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.45
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACCCTTCGA
Found at i:15645453 original size:28 final size:28
Alignment explanation
Indices: 15645413--15645467 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
15645403 TTTATACAAA
* *
15645413 GCCTAGAACTACTCATTACTCCTCCCCT
1 GCCTAAAACTACTCATAACTCCTCCCCT
15645441 GCCTAAAACTACTCATAACTCCTCCCC
1 GCCTAAAACTACTCATAACTCCTCCCC
15645468 AACCCTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.25, C:0.44, G:0.05, T:0.25
Consensus pattern (28 bp):
GCCTAAAACTACTCATAACTCCTCCCCT
Found at i:15651870 original size:27 final size:27
Alignment explanation
Indices: 15651840--15652046 Score: 301
Period size: 27 Copynumber: 7.7 Consensus size: 27
15651830 CAACCCATAG
* * * *
15651840 GGGTATTTCGGTCATTTTACCTTTCAA
1 GGGTATTTCAGTAATTTTACCCTTCGA
** * *
15651867 GGGTATTTTGGTAATTTTATCCTTTGA
1 GGGTATTTCAGTAATTTTACCCTTCGA
15651894 GGGTATTTC-GATAATTTTACCCTTC-A
1 GGGTATTTCAG-TAATTTTACCCTTCGA
15651920 GGGGTATTTCAGTAATTTTACCCTTCGA
1 -GGGTATTTCAGTAATTTTACCCTTCGA
15651948 GGGTATTTCAGTAATTTTACCCTTCGA
1 GGGTATTTCAGTAATTTTACCCTTCGA
15651975 GGGTATTTCAGTAATTTTACCCTTCGA
1 GGGTATTTCAGTAATTTTACCCTTCGA
15652002 GGGTATTTCAGTAATTTTACCCTTCGA
1 GGGTATTTCAGTAATTTTACCCTTCGA
*
15652029 GGGTATTTTAGTAATTTT
1 GGGTATTTCAGTAATTTT
15652047 TCACCCCAAG
Statistics
Matches: 166, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
26 2 0.01
27 162 0.98
28 2 0.01
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.44
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACCCTTCGA
Found at i:15653445 original size:477 final size:477
Alignment explanation
Indices: 15652551--15653504 Score: 1908
Period size: 477 Copynumber: 2.0 Consensus size: 477
15652541 GAGGAAATAA
15652551 GAGGGGGAGGAGTTGATTGGGGAGAAACCGAACAGGTGAGGAGGAAAAAGAAAAAGAAAGGTGGG
1 GAGGGGGAGGAGTTGATTGGGGAGAAACCGAACAGGTGAGGAGGAAAAAGAAAAAGAAAGGTGGG
15652616 GGAGGATAGTTGTGAAATTTGGCCACAAGGAGAGAGAAGGGTTCTACCAAAAAGGGAAGAAAGAA
66 GGAGGATAGTTGTGAAATTTGGCCACAAGGAGAGAGAAGGGTTCTACCAAAAAGGGAAGAAAGAA
15652681 TCAGGTTAGGAAGAAAGGATGAGAGAAGAAGAACAACTAAATGAAATGGGGAGGAGGAGAGGAGC
131 TCAGGTTAGGAAGAAAGGATGAGAGAAGAAGAACAACTAAATGAAATGGGGAGGAGGAGAGGAGC
15652746 TTTTGGCAGCAGAAGAAGAGAAAAGAGAGGAGGGTTTTAGCCAAAACAAAGAAAAAAAAGATGAG
196 TTTTGGCAGCAGAAGAAGAGAAAAGAGAGGAGGGTTTTAGCCAAAACAAAGAAAAAAAAGATGAG
15652811 TAGAAACAAGTTCGATACTTGCCGAAATGTACACTTAACGCGAAAAGAAAGTAACCCGAAGTTGG
261 TAGAAACAAGTTCGATACTTGCCGAAATGTACACTTAACGCGAAAAGAAAGTAACCCGAAGTTGG
15652876 CGAAAAGTTTCACTGAATCGAAAGCTTCTACTGCCCAGTGACTAATTCGGCACAAGCCTAGCCAA
326 CGAAAAGTTTCACTGAATCGAAAGCTTCTACTGCCCAGTGACTAATTCGGCACAAGCCTAGCCAA
15652941 AACCTTGAGTACAAGTTCCCCAAATTGGGACAACTCTCCCTCTTAACCACCCCTCGATTTTCTCC
391 AACCTTGAGTACAAGTTCCCCAAATTGGGACAACTCTCCCTCTTAACCACCCCTCGATTTTCTCC
15653006 ACAATTCTCTCCCCTTATCACT
456 ACAATTCTCTCCCCTTATCACT
15653028 GAGGGGGAGGAGTTGATTGGGGAGAAACCGAACAGGTGAGGAGGAAAAAGAAAAAGAAAGGTGGG
1 GAGGGGGAGGAGTTGATTGGGGAGAAACCGAACAGGTGAGGAGGAAAAAGAAAAAGAAAGGTGGG
15653093 GGAGGATAGTTGTGAAATTTGGCCACAAGGAGAGAGAAGGGTTCTACCAAAAAGGGAAGAAAGAA
66 GGAGGATAGTTGTGAAATTTGGCCACAAGGAGAGAGAAGGGTTCTACCAAAAAGGGAAGAAAGAA
15653158 TCAGGTTAGGAAGAAAGGATGAGAGAAGAAGAACAACTAAATGAAATGGGGAGGAGGAGAGGAGC
131 TCAGGTTAGGAAGAAAGGATGAGAGAAGAAGAACAACTAAATGAAATGGGGAGGAGGAGAGGAGC
15653223 TTTTGGCAGCAGAAGAAGAGAAAAGAGAGGAGGGTTTTAGCCAAAACAAAGAAAAAAAAGATGAG
196 TTTTGGCAGCAGAAGAAGAGAAAAGAGAGGAGGGTTTTAGCCAAAACAAAGAAAAAAAAGATGAG
15653288 TAGAAACAAGTTCGATACTTGCCGAAATGTACACTTAACGCGAAAAGAAAGTAACCCGAAGTTGG
261 TAGAAACAAGTTCGATACTTGCCGAAATGTACACTTAACGCGAAAAGAAAGTAACCCGAAGTTGG
15653353 CGAAAAGTTTCACTGAATCGAAAGCTTCTACTGCCCAGTGACTAATTCGGCACAAGCCTAGCCAA
326 CGAAAAGTTTCACTGAATCGAAAGCTTCTACTGCCCAGTGACTAATTCGGCACAAGCCTAGCCAA
15653418 AACCTTGAGTACAAGTTCCCCAAATTGGGACAACTCTCCCTCTTAACCACCCCTCGATTTTCTCC
391 AACCTTGAGTACAAGTTCCCCAAATTGGGACAACTCTCCCTCTTAACCACCCCTCGATTTTCTCC
15653483 ACAATTCTCTCCCCTTATCACT
456 ACAATTCTCTCCCCTTATCACT
15653505 CCACTGTTTT
Statistics
Matches: 477, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
477 477 1.00
ACGTcount: A:0.38, C:0.17, G:0.27, T:0.18
Consensus pattern (477 bp):
GAGGGGGAGGAGTTGATTGGGGAGAAACCGAACAGGTGAGGAGGAAAAAGAAAAAGAAAGGTGGG
GGAGGATAGTTGTGAAATTTGGCCACAAGGAGAGAGAAGGGTTCTACCAAAAAGGGAAGAAAGAA
TCAGGTTAGGAAGAAAGGATGAGAGAAGAAGAACAACTAAATGAAATGGGGAGGAGGAGAGGAGC
TTTTGGCAGCAGAAGAAGAGAAAAGAGAGGAGGGTTTTAGCCAAAACAAAGAAAAAAAAGATGAG
TAGAAACAAGTTCGATACTTGCCGAAATGTACACTTAACGCGAAAAGAAAGTAACCCGAAGTTGG
CGAAAAGTTTCACTGAATCGAAAGCTTCTACTGCCCAGTGACTAATTCGGCACAAGCCTAGCCAA
AACCTTGAGTACAAGTTCCCCAAATTGGGACAACTCTCCCTCTTAACCACCCCTCGATTTTCTCC
ACAATTCTCTCCCCTTATCACT
Found at i:15658173 original size:28 final size:28
Alignment explanation
Indices: 15658131--15658229 Score: 162
Period size: 28 Copynumber: 3.5 Consensus size: 28
15658121 GCAGTAACAG
*
15658131 TAGCCCAATACAGTAATAATGTGGGCCT
1 TAGCCCAATACAGTAACAATGTGGGCCT
*
15658159 TTGCCCAATACAGTAACAATGTGGGCCT
1 TAGCCCAATACAGTAACAATGTGGGCCT
15658187 TAGCCCAATACAGTAACAATGTGGGCCT
1 TAGCCCAATACAGTAACAATGTGGGCCT
* *
15658215 AAGCCCAATATAGTA
1 TAGCCCAATACAGTA
15658230 TCAGTACAGT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.23
Consensus pattern (28 bp):
TAGCCCAATACAGTAACAATGTGGGCCT
Found at i:15658611 original size:27 final size:27
Alignment explanation
Indices: 15658581--15658669 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
15658571 TTTCATCTGC
15658581 TAGGGGTATAAGAGTCATTTTACCCTA
1 TAGGGGTATAAGAGTCATTTTACCCTA
**
15658608 TAGGGGTA-ATTCAGTCATTTTACCCTA
1 TAGGGGTATA-AGAGTCATTTTACCCTA
* ** *
15658635 TAAGGGTAATTCG-GTCATTTTACCCTG
1 TAGGGGT-ATAAGAGTCATTTTACCCTA
*
15658662 TGGGGGTA
1 TAGGGGTA
15658670 ATTCGGTTAT
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
26 2 0.04
27 47 0.94
28 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (27 bp):
TAGGGGTATAAGAGTCATTTTACCCTA
Found at i:15658670 original size:27 final size:27
Alignment explanation
Indices: 15658593--15658708 Score: 160
Period size: 27 Copynumber: 4.3 Consensus size: 27
15658583 GGGGTATAAG
15658593 AGTCATTTTACCCTATAGGGGTAATTC
1 AGTCATTTTACCCTATAGGGGTAATTC
*
15658620 AGTCATTTTACCCTATAAGGGTAATTC
1 AGTCATTTTACCCTATAGGGGTAATTC
* * *
15658647 GGTCATTTTACCCTGTGGGGGTAATTC
1 AGTCATTTTACCCTATAGGGGTAATTC
* * * *
15658674 GGTTATTATACCCTATGGGGGTAATTC
1 AGTCATTTTACCCTATAGGGGTAATTC
15658701 AGTCATTT
1 AGTCATTT
15658709 ATTAACCTCT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (27 bp):
AGTCATTTTACCCTATAGGGGTAATTC
Found at i:15667845 original size:69 final size:69
Alignment explanation
Indices: 15667730--15667865 Score: 245
Period size: 69 Copynumber: 2.0 Consensus size: 69
15667720 GTTCTGTACC
*
15667730 TAGTTGGGCTTTGACCTTTCTTATCTCTCATTTATCTGTCGCTGCTATCAACATGTCATCAACAT
1 TAGTTGGGCTTTGACCTTTCTTATCTCTCATTTATCTGTCACTGCTATCAACATGTCATCAACAT
15667795 AACT
66 AACT
* *
15667799 TAGTTGGGCTTTGACCTTTCTTATCTCTCATTTATCTTTCATTGCTATCAACATGTCATCAACAT
1 TAGTTGGGCTTTGACCTTTCTTATCTCTCATTTATCTGTCACTGCTATCAACATGTCATCAACAT
15667864 AA
66 AA
15667866 AGGAGTAGAA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.42
Consensus pattern (69 bp):
TAGTTGGGCTTTGACCTTTCTTATCTCTCATTTATCTGTCACTGCTATCAACATGTCATCAACAT
AACT
Found at i:15669897 original size:27 final size:27
Alignment explanation
Indices: 15669877--15669949 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
15669867 TTACCCTATT
*
15669877 GGGCTATTTCAGTTATTTTACCCTTCA
1 GGGCTATTTCAGTAATTTTACCCTTCA
* * *
15669904 GGGGTATTTCGGTAATTTTACCCTTTAA
1 GGGCTATTTCAGTAATTTTACCC-TTCA
15669932 GGG-TATTTC-GATAATTTT
1 GGGCTATTTCAG-TAATTTT
15669950 CCAGCCCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
26 1 0.03
27 33 0.82
28 6 0.15
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.45
Consensus pattern (27 bp):
GGGCTATTTCAGTAATTTTACCCTTCA
Found at i:15674199 original size:27 final size:27
Alignment explanation
Indices: 15674178--15674403 Score: 285
Period size: 27 Copynumber: 8.3 Consensus size: 27
15674168 AGGGGTATAA
* * *
15674178 CAGTTATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTGTGGGGGTAATT
* *
15674205 C-GATCATTTTACCCTATAAGGGGTAATT
1 CAG-TCATTTTACCCTGT-GGGGGTAATT
** *
15674233 C-GATCATTTTACCCAATGGGGTTAATT
1 CAG-TCATTTTACCCTGTGGGGGTAATT
* *
15674260 CAGTTATTTTACCTTGTGGGGGTAATT
1 CAGTCATTTTACCCTGTGGGGGTAATT
* *
15674287 CGGTTATTTTACCCTGTGGGGGTAATT
1 CAGTCATTTTACCCTGTGGGGGTAATT
15674314 CAGTCATTTTACCCTGTGGGGGTAATT
1 CAGTCATTTTACCCTGTGGGGGTAATT
15674341 CAGTCATTTTACCCTGTGGGGGTAATT
1 CAGTCATTTTACCCTGTGGGGGTAATT
*
15674368 CAGTCATTTTACCCTGTGGGGTTAATT
1 CAGTCATTTTACCCTGTGGGGGTAATT
*
15674395 CGGTCATTT
1 CAGTCATTT
15674404 ATTGACCTCT
Statistics
Matches: 179, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
26 1 0.01
27 153 0.85
28 25 0.14
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (27 bp):
CAGTCATTTTACCCTGTGGGGGTAATT
Found at i:15677676 original size:27 final size:27
Alignment explanation
Indices: 15677644--15677822 Score: 202
Period size: 27 Copynumber: 6.7 Consensus size: 27
15677634 TATGTTATAG
*
15677644 GGGTATTTCAGG-CATTTTACCCTTCGA
1 GGGTATTTC-GGTAATTTTACCCTTCGA
*
15677671 GAGTATTTCGGTAATTTT-CTCCTTCGA
1 GGGTATTTCGGTAATTTTAC-CCTTCGA
* * * *
15677698 GGGTATTTTGATAATTTTACCTTTCGG
1 GGGTATTTCGGTAATTTTACCCTTCGA
* * **
15677725 GGGTATTTCAGTAATTTTTCCCTTTAA
1 GGGTATTTCGGTAATTTTACCCTTCGA
15677752 GGGTATTTCGGTAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* *
15677779 GGGTATTTTGGTAATTTTACCCTTCAA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
15677806 GGGAATTT-GGTAATTTT
1 GGGTATTTCGGTAATTTT
15677823 CTGGCCTAAG
Statistics
Matches: 127, Mismatches: 22, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
26 12 0.09
27 114 0.90
28 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.21, T:0.44
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACCCTTCGA
Found at i:15677758 original size:81 final size:81
Alignment explanation
Indices: 15677643--15677799 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 81
15677633 TTATGTTATA
* *
15677643 GGGGTATTTCAGGCATTTTACCCTTCGAGAGTATTTCGGTAATTTT-CTCCTTCGAGGGTATTTT
1 GGGGTATTTCAGGAATTTTACCCTTCAAGAGTATTTCGGTAATTTTAC-CCTTCGAGGGTATTTT
15677707 GATAATTTTACCTTTCG
65 GATAATTTTACCTTTCG
* * * *
15677724 GGGGTATTTCAGTAATTTTTCCCTTTAAGGGTATTTCGGTAATTTTACCCTTCGAGGGTATTTTG
1 GGGGTATTTCAGGAATTTTACCCTTCAAGAGTATTTCGGTAATTTTACCCTTCGAGGGTATTTTG
*
15677789 GTAATTTTACC
66 ATAATTTTACC
15677800 CTTCAAGGGA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
81 67 0.99
82 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (81 bp):
GGGGTATTTCAGGAATTTTACCCTTCAAGAGTATTTCGGTAATTTTACCCTTCGAGGGTATTTTG
ATAATTTTACCTTTCG
Found at i:15678829 original size:26 final size:24
Alignment explanation
Indices: 15678776--15678834 Score: 57
Period size: 26 Copynumber: 2.4 Consensus size: 24
15678766 ATTATTATAT
* *
15678776 TATTAAT-AAATTTTTATTTTTAA
1 TATTAATAAAATTTTAATTTTCAA
*
15678799 AATTAATAAAATATTATAATTTTCAA
1 TATTAATAAAAT-TT-TAATTTTCAA
*
15678825 TATTATTAAA
1 TATTAATAAA
15678835 CATACAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 6 0.21
24 4 0.14
25 2 0.07
26 16 0.57
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TATTAATAAAATTTTAATTTTCAA
Found at i:15681353 original size:43 final size:43
Alignment explanation
Indices: 15681285--15681553 Score: 245
Period size: 43 Copynumber: 6.3 Consensus size: 43
15681275 CGCTATTGAC
** * *
15681285 AACGCCGCTAAAGATCATGGTCTTTAGCGGCACTTTTGCCACA
1 AACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTACCACA
* * * * * *
15681328 AACGTCGCTAGATATCATGACCTTTAGCAGCGCTTCTACTACA
1 AACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTACCACA
* ** * * * *
15681371 AACGCCGCTAAAGATGATGGTCTTTAGTGACGCTTTTAACGCA
1 AACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTACCACA
* * * *
15681414 AACGCCGCTAAAGATCATGGCCTTTAGCGGCGCTTATACTAGA
1 AACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTACCACA
* **
15681457 AACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTCTATTACA
1 AACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTACCACA
* ** * * *
15681500 AACGTCGCTATAA-AAAATGACTTTTAGCGACGCTTTT-TCACA
1 AACGCCGCTA-AAGATCATGACCTTTAGCGGCGCTTTTACCACA
15681542 AACGCCGCTAAA
1 AACGCCGCTAAA
15681554 AACATGCTTT
Statistics
Matches: 181, Mismatches: 44, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
41 2 0.01
42 13 0.07
43 164 0.91
44 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
AACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTACCACA
Found at i:15681491 original size:86 final size:86
Alignment explanation
Indices: 15681285--15681553 Score: 274
Period size: 86 Copynumber: 3.1 Consensus size: 86
15681275 CGCTATTGAC
* ** * * *
15681285 AACGCCGCTAAAGATCATGGTCTTTAGCGGCACTTTTGCCACAAACGTCGCTAGATATCATGACC
1 AACGCCGCTAAAGATCATGGTCTTTAGCGGCGCTTTTAACACAAACGCCGCTAAAGATCATGACC
*
15681350 TTTAGCAGCGCTTCTACTACA
66 TTTAGCAGCGCTTATACTACA
* * * * *
15681371 AACGCCGCTAAAGATGATGGTCTTTAGTGACGCTTTTAACGCAAACGCCGCTAAAGATCATGGCC
1 AACGCCGCTAAAGATCATGGTCTTTAGCGGCGCTTTTAACACAAACGCCGCTAAAGATCATGACC
* *
15681436 TTTAGCGGCGCTTATACTAGA
66 TTTAGCAGCGCTTATACTACA
** * ** * **
15681457 AACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTCTATTACAAACGTCGCTATAA-AAAATGAC
1 AACGCCGCTAAAGATCATGGTCTTTAGCGGCGCTTTTAACACAAACGCCGCTA-AAGATCATGAC
* * *
15681521 TTTTAGC-GACGCTTTTTC-ACA
65 CTTTAGCAG-CGCTTATACTACA
15681542 AACGCCGCTAAA
1 AACGCCGCTAAA
15681554 AACATGCTTT
Statistics
Matches: 150, Mismatches: 31, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
85 15 0.10
86 133 0.89
87 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (86 bp):
AACGCCGCTAAAGATCATGGTCTTTAGCGGCGCTTTTAACACAAACGCCGCTAAAGATCATGACC
TTTAGCAGCGCTTATACTACA
Found at i:15681526 original size:129 final size:128
Alignment explanation
Indices: 15681285--15681553 Score: 335
Period size: 129 Copynumber: 2.1 Consensus size: 128
15681275 CGCTATTGAC
* * * * * *
15681285 AACGCCGCTAAAGATCATGGTCTTTAGCGGCACTTTTGCCACAAACGTCGCTAGATATCATGACC
1 AACGCCGCTAAAGATCATGGCCTTTAGCGGCACTTATACCACAAACGCCGCTAAAGATCATGACC
** * * *
15681350 TTTAGCAGCGCTTCTACTACAAACGCCGCTAAAGATGATGGTCTTTAGTGACGCTTTTAACGCA
66 TTTAGCAGCGCTTCTACTACAAACGCCGCTAAAGAAAATGCTCTTTAGCGACGCTTTT-ACACA
* * *
15681414 AACGCCGCTAAAGATCATGGCCTTTAGCGGCGCTTATACTAGAAACGCCGCTAAAGATCATGACC
1 AACGCCGCTAAAGATCATGGCCTTTAGCGGCACTTATACCACAAACGCCGCTAAAGATCATGACC
* * * *
15681479 TTTAGCGGCGCTTCTATTACAAACGTCGCTATAA-AAAATGACT-TTTAGCGACGCTTTTTCACA
66 TTTAGCAGCGCTTCTACTACAAACGCCGCTA-AAGAAAATG-CTCTTTAGCGACGCTTTTACACA
15681542 AACGCCGCTAAA
1 AACGCCGCTAAA
15681554 AACATGCTTT
Statistics
Matches: 120, Mismatches: 18, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
128 15 0.12
129 102 0.85
130 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (128 bp):
AACGCCGCTAAAGATCATGGCCTTTAGCGGCACTTATACCACAAACGCCGCTAAAGATCATGACC
TTTAGCAGCGCTTCTACTACAAACGCCGCTAAAGAAAATGCTCTTTAGCGACGCTTTTACACA
Found at i:15681603 original size:22 final size:24
Alignment explanation
Indices: 15681578--15681621 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
15681568 AAAAATTAAT
15681578 TAAATAATAT-TTAT-TTTTATAA
1 TAAATAATATATTATGTTTTATAA
*
15681600 TAAATACTATATTATGTTTTAT
1 TAAATAATATATTATGTTTTAT
15681622 TTTTGAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (24 bp):
TAAATAATATATTATGTTTTATAA
Found at i:15683762 original size:39 final size:40
Alignment explanation
Indices: 15683693--15683799 Score: 146
Period size: 40 Copynumber: 2.7 Consensus size: 40
15683683 TATTTTTTGC
* *
15683693 GGTGTTTTTAAAGTAGCGCCGCTAAAGCTCAATCTATAG-G
1 GGTGTTTTT-AAGAAGCGCCGCTAATGCTCAATCTATAGTG
*
15683733 GGTGTTTTTAAGAAGCGCCACTAATGCTCAATCTATAGTG
1 GGTGTTTTTAAGAAGCGCCGCTAATGCTCAATCTATAGTG
*
15683773 GAGT-TTTTTAAAAAGCGCCGCTAATGC
1 G-GTGTTTTTAAGAAGCGCCGCTAATGC
15683800 CTCTTATTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
39 26 0.43
40 32 0.53
41 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (40 bp):
GGTGTTTTTAAGAAGCGCCGCTAATGCTCAATCTATAGTG
Found at i:15683781 original size:40 final size:38
Alignment explanation
Indices: 15683696--15683799 Score: 136
Period size: 39 Copynumber: 2.7 Consensus size: 38
15683686 TTTTTGCGGT
* * *
15683696 GTTTTTAAAGTAGCGCCGCTAAAGCTCAATCTATAGGG
1 GTTTTTTAAGAAGCGCCGCTAATGCTCAATCTATAGGG
*
15683734 GTGTTTTTAAGAAGCGCCACTAATGCTCAATCTATAGTGG
1 GT-TTTTTAAGAAGCGCCGCTAATGCTCAATCTATAG-GG
*
15683774 AGTTTTTTAAAAAGCGCCGCTAATGC
1 -GTTTTTTAAGAAGCGCCGCTAATGC
15683800 CTCTTATTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.04
39 30 0.53
40 23 0.40
41 2 0.04
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (38 bp):
GTTTTTTAAGAAGCGCCGCTAATGCTCAATCTATAGGG
Found at i:15684532 original size:14 final size:14
Alignment explanation
Indices: 15684513--15684563 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
15684503 CTAAACCCTA
15684513 AACCCCTAACTCTT
1 AACCCCTAACTCTT
15684527 AACCCCTAACGTC-T
1 AACCCCTAAC-TCTT
*
15684541 AACCCCTTAACCCTT
1 AACCCC-TAACTCTT
15684556 -ACCCCTAA
1 AACCCCTAA
15684564 ACCTTAAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
13 3 0.09
14 23 0.70
15 7 0.21
ACGTcount: A:0.29, C:0.45, G:0.02, T:0.24
Consensus pattern (14 bp):
AACCCCTAACTCTT
Found at i:15684566 original size:14 final size:13
Alignment explanation
Indices: 15684479--15684563 Score: 57
Period size: 14 Copynumber: 6.2 Consensus size: 13
15684469 CTAAACCCAA
15684479 AACCCTAA-CCC-
1 AACCCTAACCCCT
*
15684490 AACCCTTGAATCCCT
1 AACCC-T-AACCCCT
15684505 AAACCCTAAACCCCT
1 -AACCCT-AACCCCT
*
15684520 AACTCTTAACCCCT
1 AAC-CCTAACCCCT
*
15684534 AACGTCTAACCCCTT
1 AAC-CCTAACCCC-T
*
15684549 AACCCTTACCCCT
1 AACCCTAACCCCT
15684562 AA
1 AA
15684564 ACCTTAAATC
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
11 5 0.08
12 1 0.02
13 5 0.08
14 30 0.51
15 13 0.22
16 5 0.08
ACGTcount: A:0.32, C:0.45, G:0.02, T:0.21
Consensus pattern (13 bp):
AACCCTAACCCCT
Found at i:15684580 original size:21 final size:21
Alignment explanation
Indices: 15684556--15684635 Score: 56
Period size: 21 Copynumber: 3.8 Consensus size: 21
15684546 CTTAACCCTT
*
15684556 ACCCCTAAACCTTAAATCCCA
1 ACCCATAAACCTTAAATCCCA
*
15684577 ACCCATAAACCAT-AATCCCTA
1 ACCCATAAACCTTAAATCCC-A
* * * *
15684598 ATCCGTAATCCCTAAA-CCCA
1 ACCCATAAACCTTAAATCCCA
*
15684618 TACTCCTTAAACCTTAAA
1 -AC-CCATAAACCTTAAA
15684636 ATAGTACCCC
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
20 7 0.16
21 25 0.56
22 13 0.29
ACGTcount: A:0.39, C:0.38, G:0.01, T:0.23
Consensus pattern (21 bp):
ACCCATAAACCTTAAATCCCA
Found at i:15685072 original size:41 final size:41
Alignment explanation
Indices: 15684976--15685215 Score: 270
Period size: 41 Copynumber: 5.9 Consensus size: 41
15684966 TAAAATGTTT
* *
15684976 TTAGCGGCGCTTTTTC-AAAACTGCAGCTAAAGCCCCGAGCA
1 TTAGCGGCGCTTTTTCAAAAAC-GCCGCTAAAACCCCGAGCA
* * *
15685017 TTAGTGGCGC-TTTTCAAAAACGCCGCTAAAATCTCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
* *
15685057 TTAGCGACGCTTTTTCAAAAACGCCG-TAAAAACCCCAAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCT-AAAACCCCGAGCA
* *
15685098 TTAGCGGCGCTTTTTCAAAAATGCAGCTAAAACCCCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
* * * * **
15685139 TTAGCAGCACTTTTTAAAAAACGCCGCTAAAACACAAAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
* ** *
15685180 TTAGCGGCACTTTTTTGAAAACGCCGCTAAAGCCCC
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCC
15685216 CGAAAGGTAA
Statistics
Matches: 167, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
40 29 0.17
41 137 0.82
42 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.22
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
Found at i:15692554 original size:26 final size:24
Alignment explanation
Indices: 15692501--15692559 Score: 57
Period size: 26 Copynumber: 2.4 Consensus size: 24
15692491 ATTATTATAT
* *
15692501 TATTAAT-AAATTTTTATTTTTAA
1 TATTAATAAAATTTTAATTTTCAA
*
15692524 AATTAATAAAATATTATAATTTTCAA
1 TATTAATAAAAT-TT-TAATTTTCAA
*
15692550 TATTATTAAA
1 TATTAATAAA
15692560 CATACATATT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 6 0.21
24 4 0.14
25 2 0.07
26 16 0.57
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TATTAATAAAATTTTAATTTTCAA
Found at i:15695151 original size:86 final size:86
Alignment explanation
Indices: 15695044--15695215 Score: 337
Period size: 85 Copynumber: 2.0 Consensus size: 86
15695034 GCACTATATA
15695044 AATGTTAGGGAGTTGAATTTTTTAGAATCAAGATTAAACTGACATAATGTATAAACGATGAGAGC
1 AATGTTAGGGAGTTGAATTTTTTAGAATCAAGATTAAACTGACATAATGTATAAACGATGAGAGC
15695109 TAAAATTACTATTATGTCAAT
66 TAAAATTACTATTATGTCAAT
15695130 AATGTTAGGG-GTTGAATTTTTTAGAATCAAGATTAAACTGACATAATGTATAAACGATGAGAGC
1 AATGTTAGGGAGTTGAATTTTTTAGAATCAAGATTAAACTGACATAATGTATAAACGATGAGAGC
15695194 TAAAATTACTATTATGTCAAT
66 TAAAATTACTATTATGTCAAT
15695215 A
1 A
15695216 TTAAAAGCTG
Statistics
Matches: 86, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 76 0.88
86 10 0.12
ACGTcount: A:0.41, C:0.08, G:0.17, T:0.34
Consensus pattern (86 bp):
AATGTTAGGGAGTTGAATTTTTTAGAATCAAGATTAAACTGACATAATGTATAAACGATGAGAGC
TAAAATTACTATTATGTCAAT
Found at i:15700336 original size:26 final size:24
Alignment explanation
Indices: 15700283--15700341 Score: 57
Period size: 26 Copynumber: 2.4 Consensus size: 24
15700273 ATTATTATAT
* *
15700283 TATTAAT-AAATTTTTATTTTTAA
1 TATTAATAAAATTTTAATTTTCAA
*
15700306 AATTAATAAAATATTATAATTTTCAA
1 TATTAATAAAAT-TT-TAATTTTCAA
*
15700332 TATTATTAAA
1 TATTAATAAA
15700342 CATACATATT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 6 0.21
24 4 0.14
25 2 0.07
26 16 0.57
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TATTAATAAAATTTTAATTTTCAA
Found at i:15702405 original size:40 final size:40
Alignment explanation
Indices: 15702361--15702604 Score: 231
Period size: 40 Copynumber: 5.8 Consensus size: 40
15702351 GTTTCTTTTG
* *
15702361 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGTTTCGA
**
15702401 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-C--TGGTTTCGA
* * ** * *
15702444 TCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTG-
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGACTGGTTTC----GA
* * *
15702488 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGTTTCGA
*
15702528 TCTGCTCCACTACTGCTTGGGGAGATAAGATCTGGTTTCTTTTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGGTTTC----GA
15702572 TCTGCTCCACTACTGCTTAGGGAGATAAGACTG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTG
15702605 CTAGCTCAAT
Statistics
Matches: 164, Mismatches: 26, Indels: 25
0.76 0.12 0.12
Matches are distributed among these distances:
39 1 0.01
40 59 0.36
41 12 0.07
43 37 0.23
44 54 0.33
45 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.32
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGTTTCGA
Found at i:15702489 original size:127 final size:127
Alignment explanation
Indices: 15702330--15702561 Score: 414
Period size: 127 Copynumber: 1.8 Consensus size: 127
15702320 ACTCTGCTGT
15702330 AACTTCATGGGGATGAGATTGGTTTCTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGG
1 AACTTCATGGGGATGAGATTGGTTTCTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGG
15702395 ATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGC
66 ATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGC
15702457 AACTTCA-GGGAGAT-AGGATTGGTTTCTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACT
1 AACTTCATGGG-GATGA-GATTGGTTTCTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACT
* *
15702520 TGATGCGATCTGCTCCACTACTGCTTGGGGAGATAAGATCTG
64 GGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
15702562 GTTTCTTTTG
Statistics
Matches: 101, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
126 4 0.04
127 97 0.96
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (127 bp):
AACTTCATGGGGATGAGATTGGTTTCTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGG
ATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGC
Found at i:15702586 original size:84 final size:86
Alignment explanation
Indices: 15702361--15702604 Score: 297
Period size: 84 Copynumber: 2.9 Consensus size: 86
15702351 GTTTCTTTTG
* *
15702361 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGGATGC----GATCTGCTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTTG-TCTGCTCCACTACTGCTTAG
* **
15702421 GGAGATAAGATCTGTGGTTTTAA
65 GGAGATAAGA-CTGTGGATGCAA
* * ** *
15702444 TCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TGGTTTCTTTTGTCTGCTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGGTTTCTTTTGTCTGCTCCACTACTGCTTAG
*
15702508 GGAGATAAGACT-T-GATGCGA
65 GGAGATAAGACTGTGGATGCAA
*
15702528 TCTGCTCCACTACTGCTTGGGGAGATAAGATCTGGTTTCTTTTGTCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTTGTCTGCTCCACTACTGCTTAGG
15702593 GAGATAAGACTG
66 GAGATAAGACTG
15702605 CTAGCTCAAT
Statistics
Matches: 136, Mismatches: 17, Indels: 14
0.81 0.10 0.08
Matches are distributed among these distances:
83 25 0.18
84 77 0.57
85 1 0.01
86 2 0.01
87 30 0.22
88 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.32
Consensus pattern (86 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTTGTCTGCTCCACTACTGCTTAGG
GAGATAAGACTGTGGATGCAA
Found at i:15702634 original size:127 final size:126
Alignment explanation
Indices: 15702365--15702693 Score: 297
Period size: 127 Copynumber: 2.6 Consensus size: 126
15702355 CTTTTGTCTG
*
15702365 CTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAG
1 CTCCACTAATGCTTAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAG
* * * * ** ** *
15702430 ATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTG
66 ATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAAGACTGCTAGCTAATG-CTA
* * *
15702492 CTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTGGGGAGATAAG
1 CTCCACTAATGCTTAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAG
* ** * **
15702557 ATCTG-GTTTCTTTTGTCTGCTCCACTACTGCTT-AGGGAGATAAGACTGCTAGCTCAATG-TA
66 ATCTGTG-GT-TTTAATCCGCTCCACTACAACTTCAGGGAGATAAGACTGCTAGCT-AATGCTA
* * *** * * *
15702618 CTCCACTGTAAT-CTTAGGGAGGTAAAATCCACCATCTTCGATTTGCTCCATTACTGCTTAGGGA
1 CTCCAC--TAATGCTTAGGGAGATAAGA--CTGGA--TGCGATCTGCTCCACTACTGCTTAGGGA
15702682 GATAAGATCTGT
60 GATAAGATCTGT
15702694 AATCTTCAAT
Statistics
Matches: 165, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
126 8 0.05
127 98 0.59
128 22 0.13
129 2 0.01
131 35 0.21
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (126 bp):
CTCCACTAATGCTTAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAG
ATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAAGACTGCTAGCTAATGCTA
Found at i:15702699 original size:44 final size:43
Alignment explanation
Indices: 15702361--15702956 Score: 246
Period size: 44 Copynumber: 13.8 Consensus size: 43
15702351 GTTTCTTTTG
* *
15702361 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGGA--TGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTATCTTCGA
* **
15702401 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGT-TTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT-ATCTTCGA
* * ** * * *
15702444 TCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TGGTTTCTTTTG-
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGATCT-GTATC-TTCGA
*
15702488 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGA--TGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT-ATCTTCGA
* * *
15702528 TCTGCTCCACTACTGCTTGGGGAGATAAGATCTGGTTTCTTTTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCT-GTATC-TTCGA
* *
15702572 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGCTAGC-TCAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTG-TATCTTCGA
* * * * * ***
15702614 TGTACTCCACTGTAAT-CTTAGGGAGGTAAAATCCACCATCTTCGA
1 TCTGCTCCAC--TACTGCTTAGGGAGATAAGAT-CTGTATCTTCGA
* * *
15702659 TTTGCTCCATTACTGCTTAGGGAGATAAGATCTGTAATCTTCAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT-ATCTTCGA
** * ** * * *
15702703 TCTATTCCACTCCTGCCCAGGGAGAT-AGAGCT-AATGGCTTCAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAT--CTTCGA
* * * * * * **
15702746 TGTACTCCACTA-TAATCTCAGGGAGGTAAAATCCTCCATCTTCGA
1 TCTGCTCCACTACT--GCTTAGGGAGATAAGAT-CTGTATCTTCGA
* * *
15702791 TCTGCTCCACTA-TGCTTAAGGAGATAAGATATGTAATCTTCAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT-ATCTTCGA
** * ** * * *
15702834 TCTATTCCACTGCTGCCCAGGGAGAT-AGAACT-AATGGCTTCAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAT--CTTCGA
* * * * * * *
15702877 TGTACTCCACTGTAAT-CTCAGGGAGGTAAAAT-TCGCCATCTTCGA
1 TCTGCTCCAC--TACTGCTTAGGGAGATAAGATCT-G-TATCTTCGA
*
15702922 TCTGCCCCACTACTGCTTAGGGAGATAAGATCTGT
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
15702957 GGTTTTAATC
Statistics
Matches: 406, Mismatches: 106, Indels: 85
0.68 0.18 0.14
Matches are distributed among these distances:
39 2 0.00
40 59 0.15
41 11 0.03
42 11 0.03
43 121 0.30
44 145 0.36
45 51 0.13
46 2 0.00
47 4 0.01
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (43 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTATCTTCGA
Found at i:15702789 original size:132 final size:132
Alignment explanation
Indices: 15702525--15702956 Score: 593
Period size: 131 Copynumber: 3.3 Consensus size: 132
15702515 AGACTTGATG
* * *** ** * *
15702525 CGATCTGCTCCACTACTGCTTGGGGAGATAAGATCTGGT-TTCTTTTGTCTGCTCCACTACTGCT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-GTAATCTTCAATCTATTCCACTCCTGCC
* ** * *
15702589 TAGGGAGATA-AGACTGCTAGC-TCAATGTACTCCACTGTAATCTTAGGGAGGTAAAATCCACCA
65 CAGGGAGATAGA-ACTAATGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCCACCA
15702652 TCTT
129 TCTT
* *
15702656 CGATTTGCTCCATTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTCCTGCCC
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTCCTGCCC
* * *
15702721 AGGGAGATAGAGCTAATGGCTTCAATGTACTCCACTATAATCTCAGGGAGGTAAAATCCTCCATC
66 AGGGAGATAGAACTAATGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCCACCATC
15702786 TT
131 TT
* * *
15702788 CGATCTGCTCCACTA-TGCTTAAGGAGATAAGATATGTAATCTTCAATCTATTCCACTGCTGCCC
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTCCTGCCC
* *
15702852 AGGGAGATAGAACTAATGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATTCGCCATC
66 AGGGAGATAGAACTAATGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCCACCATC
15702917 TT
131 TT
*
15702919 CGATCTGCCCCACTACTGCTTAGGGAGATAAGATCTGT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
15702957 GGTTTTAATC
Statistics
Matches: 266, Mismatches: 31, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
130 2 0.01
131 187 0.70
132 77 0.29
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (132 bp):
CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTCCTGCCC
AGGGAGATAGAACTAATGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCCACCATC
TT
Found at i:15703251 original size:44 final size:43
Alignment explanation
Indices: 15703193--15703591 Score: 297
Period size: 44 Copynumber: 9.1 Consensus size: 43
15703183 AGATCTGTTT
* * *
15703193 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAATATCTGCA
1 TCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCA
* * * * *
15703237 TTTTCGATCCACTTCCTACCAATATAGGAAGA-TAGAACCTGCTA
1 TCTTCGATCTACTTCCCACCAATATAGGAAGACAAG-ATCTGC-A
* * * * *
15703281 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGC-A
* *
15703325 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCA
1 TCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCA
* * * * *
15703369 TCTTCGATCCACTTCCTACCAATATAGGAAGAC-AGAACCTACTG
1 TCTTCGATCTACTTCCCACCAATATAGGAAGACAAG-ATCTGC-A
* * * * *
15703413 TCTAT-GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCT-TCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGC-A
* * * * *
15703457 TCTTCGATCCACTTCCTA-CAATATAGGAAGAC-AGAACCTACTG
1 TCTTCGATCTACTTCCCACCAATATAGGAAGACAAG-ATCTGC-A
* * * * * *
15703500 TCTAT-GATCTACTTCACGCCAATACATGAAGACAAGATCTTCTT
1 TCT-TCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGC-A
*
15703544 TCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCA
1 TCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCA
15703588 TCTT
1 TCTT
15703592 TAACTAGCTC
Statistics
Matches: 274, Mismatches: 66, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
42 5 0.02
43 69 0.25
44 151 0.55
45 49 0.18
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (43 bp):
TCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCA
Found at i:15703391 original size:88 final size:88
Alignment explanation
Indices: 15703182--15703586 Score: 324
Period size: 87 Copynumber: 4.6 Consensus size: 88
15703172 TCAGAGAGAT
* * * * * * * *
15703182 AAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAATATCTGCATT-TTCGATC
1 AAGATCTGCTATCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGATCTGCTTTCTTCGATC
* *
15703246 CACTTCCTACCAATATAGGAAGA-
65 TACTTCCCACCAATATAGGAAGAC
* * * * * *
15703269 TAGAACCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCTTCGAT
1 AAG-ATCTGCTATCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGATCTGCTTTCTTCGAT
* *
15703333 CTACTTCGCCACCAGTATGGGAAGAC
64 CTACTTC-CCACCAATATAGGAAGAC
* * *
15703359 AAGATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGAC-AGAACCTACTGTCTAT-GAT
1 AAGATCTGCTATCTTCGATCCACTTCCTACCAATATAGGAAGACAAG-ATCTGCTTTCT-TCGAT
* * * *
15703421 CTACTTCACGCCAATACATGAAGAC
64 CTACTTCCCACCAATATAGGAAGAC
* * * *
15703446 AAGATCTGCTTTCTTCGATCCACTTCCTA-CAATATAGGAAGAC-AGAACCTACTGTCTAT-GAT
1 AAGATCTGCTATCTTCGATCCACTTCCTACCAATATAGGAAGACAAG-ATCTGCTTTCT-TCGAT
* * * *
15703508 CTACTTCACGCCAATACATGAAGAC
64 CTACTTCCCACCAATATAGGAAGAC
* * * * *
15703533 AAGATCTTCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC
1 AAGATCTGCTATCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGATCTGC
15703587 ATCTTTAACT
Statistics
Matches: 269, Mismatches: 38, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
87 129 0.48
88 99 0.37
89 37 0.14
90 4 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (88 bp):
AAGATCTGCTATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCT
ACTTCCCACCAATATAGGAAGAC
Found at i:15703422 original size:132 final size:132
Alignment explanation
Indices: 15703182--15703471 Score: 501
Period size: 132 Copynumber: 2.2 Consensus size: 132
15703172 TCAGAGAGAT
* * *
15703182 AAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAATATCTGCATTTTCGATCC
1 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCC
* *
15703247 ACTTCCTACCAATATAGGAAGATAGAACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAG
66 ACTTCCTACCAATATAGGAAGACAGAACCTACTATCTTCGATCTACTTCACGCCAATACATGAAG
15703312 AC
131 AC
15703314 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCC
1 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCC
*
15703379 ACTTCCTACCAATATAGGAAGACAGAACCTACTGTCTAT-GATCTACTTCACGCCAATACATGAA
66 ACTTCCTACCAATATAGGAAGACAGAACCTACTATCT-TCGATCTACTTCACGCCAATACATGAA
15703443 GAC
130 GAC
*
15703446 AAGATCTGCTTTCTTCGATCCACTTC
1 AAGATCTGCTTTCTTCGATCTACTTC
15703472 CTACAATATA
Statistics
Matches: 150, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
132 149 0.99
133 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (132 bp):
AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCC
ACTTCCTACCAATATAGGAAGACAGAACCTACTATCTTCGATCTACTTCACGCCAATACATGAAG
AC
Found at i:15703490 original size:87 final size:88
Alignment explanation
Indices: 15703353--15703578 Score: 384
Period size: 87 Copynumber: 2.6 Consensus size: 88
15703343 ACCAGTATGG
*
15703353 GAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGACAGAACCTACTGTCTA
1 GAAGACAAGATCTGCTTTCTTCGATCCACTTCCTACCAATATAGGAAGACAGAACCTACTGTCTA
15703417 TGATCTACTTCACGCCAATACAT
66 TGATCTACTTCACGCCAATACAT
15703440 GAAGACAAGATCTGCTTTCTTCGATCCACTTCCTA-CAATATAGGAAGACAGAACCTACTGTCTA
1 GAAGACAAGATCTGCTTTCTTCGATCCACTTCCTACCAATATAGGAAGACAGAACCTACTGTCTA
15703504 TGATCTACTTCACGCCAATACAT
66 TGATCTACTTCACGCCAATACAT
* * * *
15703527 GAAGACAAGATCTTCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACA
1 GAAGACAAGATCTGCTTTCTTCGATCCACTTC-CTACCAATATAGGAAGACA
15703579 AGATCTGCAT
Statistics
Matches: 131, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
87 97 0.74
88 20 0.15
89 14 0.11
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.27
Consensus pattern (88 bp):
GAAGACAAGATCTGCTTTCTTCGATCCACTTCCTACCAATATAGGAAGACAGAACCTACTGTCTA
TGATCTACTTCACGCCAATACAT
Found at i:15703697 original size:87 final size:87
Alignment explanation
Indices: 15703571--15703846 Score: 473
Period size: 87 Copynumber: 3.2 Consensus size: 87
15703561 CACCAATATG
* * *
15703571 GGAAGACAAGATCTGC-ATCTTTAACTAGCTCCACTGCAACCGATGGAGGCAAGATTTTGTTTTC
1 GGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTGTTTTC
15703635 GATCTGCTCCGCTGTTAATGCA
66 GATCTGCTCCGCTGTTAATGCA
*
15703657 GGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTATTTTC
1 GGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTGTTTTC
* *
15703722 GATATACTCCGCTGTTAATGCA
66 GATCTGCTCCGCTGTTAATGCA
*
15703744 GGAAGGCAAGATCTGCTATCTTTGACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTGTTTTC
1 GGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTGTTTTC
*
15703809 GATCTGCTTCGCTGTTAATGCA
66 GATCTGCTCCGCTGTTAATGCA
15703831 GGAAGGCAAGATCTGC
1 GGAAGGCAAGATCTGC
15703847 ATCCTCGATC
Statistics
Matches: 178, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
86 15 0.08
87 163 0.92
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (87 bp):
GGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTGTTTTC
GATCTGCTCCGCTGTTAATGCA
Found at i:15703877 original size:43 final size:43
Alignment explanation
Indices: 15703830--15704103 Score: 259
Period size: 43 Copynumber: 6.3 Consensus size: 43
15703820 CTGTTAATGC
* *
15703830 AGGAAGGCAAGATCTGCATCCTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
* *
15703873 AGGAAGACAGGACCTGCATCTTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
* * * * * * *
15703916 AGGAAGACAGGACCTGATATTTTCGATCTACTTCAC-GCCAATAC
1 AGGAAGACAAGATCTG-CATCTTCGATCCACTTC-CTACCAATAT
* * *
15703960 ATGAAGACAAGATCTGCTTTCTTCGATCTACTCTGCC-ACCAATAT
1 AGGAAGACAAGATCTGC-ATCTTCGATCCACT-T-CCTACCAATAT
*
15704005 GGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATA-
1 AGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
* * * * * *
15704047 AGGAAGACAGGACCTACTATCTTC-AGTCTACTTCGCTGCCAATAC
1 AGGAAGACAAGATCTGC-ATCTTCGA-TCCACTTC-CTACCAATAT
15704092 AGGAAGACAAGA
1 AGGAAGACAAGA
15704104 CTTGATGTGA
Statistics
Matches: 193, Mismatches: 28, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
42 16 0.08
43 76 0.39
44 65 0.34
45 35 0.18
46 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
AGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
Found at i:15703957 original size:44 final size:44
Alignment explanation
Indices: 15703851--15704109 Score: 235
Period size: 44 Copynumber: 5.9 Consensus size: 44
15703841 ATCTGCATCC
* * *
15703851 TCGATCCACTTCCTACCAATATAGGAAGACAGGACCTG-CATCT
1 TCGATCTACTTCCTACCAATATAGGAAGACAAGACCTGATATCT
* * *
15703894 TCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGATATTT
1 TCGATCTACTTCCTACCAATATAGGAAGACAAGACCTGATATCT
* * * * * *
15703938 TCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCT
1 TCGATCTACTTC-CTACCAATATAGGAAGACAAGACCTGATATCT
* * *
15703982 TCGATCTACTCTGCC-ACCAATATGGGAAGACAAGATCTG-CATCT
1 TCGATCTACT-T-CCTACCAATATAGGAAGACAAGACCTGATATCT
* *
15704026 TCGATCCACTTCCTACCAATA-AGGAAGACAGGACCT-ACTATCT
1 TCGATCTACTTCCTACCAATATAGGAAGACAAGACCTGA-TATCT
* * *
15704069 TC-AGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGAT
1 TCGA-TCTACTTC-CTACCAATATAGGAAGACAAGACCTGAT
15704110 GTGATGACTT
Statistics
Matches: 179, Mismatches: 26, Indels: 20
0.80 0.12 0.09
Matches are distributed among these distances:
42 15 0.08
43 59 0.33
44 66 0.37
45 37 0.21
46 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (44 bp):
TCGATCTACTTCCTACCAATATAGGAAGACAAGACCTGATATCT
Found at i:15703966 original size:87 final size:87
Alignment explanation
Indices: 15703851--15704109 Score: 276
Period size: 87 Copynumber: 3.0 Consensus size: 87
15703841 ATCTGCATCC
*
15703851 TCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGC-ATCTTCGATCCACTTCCTACCAATA
1 TCGATCCACTTCCTACCAATA-AGGAAGACAGGACCTGCTATCTTCGATCTACTTCCTACCAATA
* *
15703915 TAGGAAGACAGGACCTGATATTT
65 TAGGAAGACAAGACCTGATATCT
* * * * * *
15703938 TCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCTGCC-ACCA
1 TCGATCCACTTC-CTACCAATA-AGGAAGACAGGACCTGCTATCTTCGATCTACT-T-CCTACCA
* * *
15704001 ATATGGGAAGACAAGATCTG-CATCT
62 ATATAGGAAGACAAGACCTGATATCT
* *
15704026 TCGATCCACTTCCTACCAATAAGGAAGACAGGACCTACTATCTTC-AGTCTACTTCGCTGCCAAT
1 TCGATCCACTTCCTACCAATAAGGAAGACAGGACCTGCTATCTTCGA-TCTACTTC-CTACCAAT
* *
15704090 ACAGGAAGACAAGACTTGAT
64 ATAGGAAGACAAGACCTGAT
15704110 GTGATGACTT
Statistics
Matches: 137, Mismatches: 26, Indels: 17
0.76 0.14 0.09
Matches are distributed among these distances:
85 1 0.01
86 3 0.02
87 76 0.55
88 33 0.24
89 22 0.16
90 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (87 bp):
TCGATCCACTTCCTACCAATAAGGAAGACAGGACCTGCTATCTTCGATCTACTTCCTACCAATAT
AGGAAGACAAGACCTGATATCT
Found at i:15704040 original size:132 final size:131
Alignment explanation
Indices: 15703182--15704103 Score: 458
Period size: 132 Copynumber: 7.0 Consensus size: 131
15703172 TCAGAGAGAT
* * * * *
15703182 AAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAATATCTGCATTTTCGATCC
1 AAGATCTGCTTTCTTCGATCTACTT-GCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCC
* * * *
15703247 ACTTCCTACCAATATAGGAAGATAGAACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAG
65 ACTTCCTACCAATATAGGAAGACAGGACCTGATATTTTCGATCTACTTCACGCCAATACATGAAG
15703312 AC
130 AC
* *
15703314 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCC
1 AAGATCTGCTTTCTTCGATCTACTT-GCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCC
* * *
15703379 ACTTCCTACCAATATAGGAAGACAGAACCT-ACTGTCTAT-GATCTACTTCACGCCAATACATGA
65 ACTTCCTACCAATATAGGAAGACAGGACCTGA-TAT-TTTCGATCTACTTCACGCCAATACATGA
15703442 AGAC
128 AGAC
* * * *
15703446 AAGATCTGCTTTCTTCGATCCACTT-CCTA-CAATATAGGAAGAC-AGAACCTACTGTCTAT-GA
1 AAGATCTGCTTTCTTCGATCTACTTGCC-ACCAATATAGGAAGACAAG-ATCTGC-ATCT-TCGA
* * * * * * ** * * *
15703507 TCTACTTCAC-GCCAATACATGAAGACAAGATCTTCT-TTCTTCGATCTACTTCGCCACCAATAT
62 TCCACTTC-CTACCAATATAGGAAGACAGGACCTGATATT-TTCGATCTACTTC-ACGCCAATAC
**
15703570 GGGAAGAC
124 ATGAAGAC
* * * * * * *
15703578 AAGATCTGC-ATCTT-TAACTAGC-T-CCACTGCAACCGAT-GG-AGGCAAGATTTTG--TTTTC
1 AAGATCTGCTTTCTTCGATCTA-CTTGCCAC--CAA--TATAGGAAGACAAGA-TCTGCATCTTC
** * *** ** * * * * * * *
15703635 GATCTGCTCCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTT--AACCAGCTCCACTG-CAA
60 GATCCACTTC-CTACCAATATAGGAAGACAGGACCTGATAT-TTTCGATCTA-CTTCAC-GCCAA
* * *
15703697 -CCGATGGAGGC
121 TAC-ATGAAGAC
* * * * **** ** * *
15703708 AAGGT-T--TTATTTTCGATATACTCCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTGA-
1 AAGATCTGCTT-TCTTCGATCTACT-TGCCACCAATATAGGAAGACAAGATCTGC-ATCTTCGAT
* * ** * * * **
15703769 CCAGC-TCC-ACTGCAACCGAT-GG-AGGCAAGG---TTTTGTTTTCGATCTGCTTCGCTGTTAA
63 CCA-CTTCCTAC--CAA--TATAGGAAGAC-AGGACCTGATATTTTCGATCTACTTCAC-GCCAA
* * *
15703827 TGCAGGAAGGC
121 TACATGAAGAC
* * * * *
15703838 AAGATCTGC-ATCCTCGATCCACTT-CCTACCAATATAGGAAGACAGGACCTGCATCTTCGATCC
1 AAGATCTGCTTTCTTCGATCTACTTGCC-ACCAATATAGGAAGACAAGATCTGCATCTTCGATCC
15703901 ACTTCCTACCAATATAGGAAGACAGGACCTGATATTTTCGATCTACTTCACGCCAATACATGAAG
65 ACTTCCTACCAATATAGGAAGACAGGACCTGATATTTTCGATCTACTTCACGCCAATACATGAAG
15703966 AC
130 AC
*
15703968 AAGATCTGCTTTCTTCGATCTACTCTGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCC
1 AAGATCTGCTTTCTTCGATCTACT-TGCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCC
* * *
15704033 ACTTCCTACCAATA-AGGAAGACAGGACCT-ACTATCTTC-AGTCTACTTCGCTGCCAATACAGG
65 ACTTCCTACCAATATAGGAAGACAGGACCTGA-TATTTTCGA-TCTACTTCAC-GCCAATACATG
15704095 AAGAC
127 AAGAC
15704100 AAGA
1 AAGA
15704104 CTTGATGTGA
Statistics
Matches: 590, Mismatches: 135, Indels: 130
0.69 0.16 0.15
Matches are distributed among these distances:
127 2 0.00
128 8 0.01
129 39 0.07
130 125 0.21
131 148 0.25
132 257 0.44
133 9 0.02
134 2 0.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (131 bp):
AAGATCTGCTTTCTTCGATCTACTTGCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCCA
CTTCCTACCAATATAGGAAGACAGGACCTGATATTTTCGATCTACTTCACGCCAATACATGAAGA
C
Done.