Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 55 of 79
Found at i:18385032 original size:43 final size:43
Alignment explanation
Indices: 18384985--18385207 Score: 290
Period size: 43 Copynumber: 5.2 Consensus size: 43
18384975 AAAGAAAAAT
*
18384985 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGACGCTTTTATCACAAAC
18385028 GCCGCTAAAGACCATGACCTTTAGCGACGCTTTTATCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGACGCTTTTATCACAAAC
* ** *
18385071 GCCGCTAAAGACCATAACCTTTAGCGGTGCTTCTATCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGACGCTTTTATCACAAAC
* * *
18385114 GCCGCTAAAGAACATGACTTTTAGCGACGCTTTTGTCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGACGCTTTTATCACAAAC
* * * * *
18385157 GCCGCTATAA-AACA-AACCTTTAGCGACGCGTCTCA-CAAAAAC
1 GCCGCTA-AAGACCATGACCTTTAGCGACGC-TTTTATCACAAAC
18385199 GCCGCTAAA
1 GCCGCTAAA
18385208 AACATAACAT
Statistics
Matches: 160, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
41 2 0.01
42 26 0.16
43 130 0.81
44 2 0.01
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGACGCTTTTATCACAAAC
Found at i:18385108 original size:86 final size:86
Alignment explanation
Indices: 18384985--18385212 Score: 320
Period size: 86 Copynumber: 2.7 Consensus size: 86
18384975 AAAGAAAAAT
* * *
18384985 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGACCATGACCTTT
1 GCCGCTAAAGACCATAACCTTTAGCGGCGCTTCTATCACAAACGCCGCTAAAGAACATGACCTTT
18385050 AGCGACGCTTTTATCACAAAC
66 AGCGACGCTTTTATCACAAAC
* *
18385071 GCCGCTAAAGACCATAACCTTTAGCGGTGCTTCTATCACAAACGCCGCTAAAGAACATGACTTTT
1 GCCGCTAAAGACCATAACCTTTAGCGGCGCTTCTATCACAAACGCCGCTAAAGAACATGACCTTT
*
18385136 AGCGACGCTTTTGTCACAAAC
66 AGCGACGCTTTTATCACAAAC
* * * *
18385157 GCCGCTATAA-AACA-AACCTTTAGCGACGCGTCTCA-CAAAAACGCCGCTAAA-AACAT
1 GCCGCTA-AAGACCATAACCTTTAGCGGCGCTTCT-ATCACAAACGCCGCTAAAGAACAT
18385213 AACATTTAAA
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
84 5 0.04
85 31 0.24
86 91 0.71
87 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (86 bp):
GCCGCTAAAGACCATAACCTTTAGCGGCGCTTCTATCACAAACGCCGCTAAAGAACATGACCTTT
AGCGACGCTTTTATCACAAAC
Found at i:18386594 original size:16 final size:16
Alignment explanation
Indices: 18386573--18386610 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
18386563 TAACTTTTAA
18386573 CCCTAAAACAT-CTAAC
1 CCCTAAAAC-TCCTAAC
18386589 CCCT-AAACTCCTAAC
1 CCCTAAAACTCCTAAC
18386604 CCCTAAA
1 CCCTAAA
18386611 CTTTAAATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.05
15 13 0.65
16 6 0.30
ACGTcount: A:0.39, C:0.42, G:0.00, T:0.18
Consensus pattern (16 bp):
CCCTAAAACTCCTAAC
Found at i:18386596 original size:15 final size:15
Alignment explanation
Indices: 18386584--18386612 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
18386574 CCTAAAACAT
18386584 CTAACCCCTAAACTC
1 CTAACCCCTAAACTC
18386599 CTAACCCCTAAACT
1 CTAACCCCTAAACT
18386613 TTAAATCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.45, G:0.00, T:0.21
Consensus pattern (15 bp):
CTAACCCCTAAACTC
Found at i:18386631 original size:21 final size:22
Alignment explanation
Indices: 18386592--18386632 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
18386582 ATCTAACCCC
*
18386592 TAAACTCCTAACCCCTAAACTT
1 TAAACTCCCAACCCCTAAACTT
*
18386614 TAAA-TCCCAACCCTTAAAC
1 TAAACTCCCAACCCCTAAAC
18386633 CATACGAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (22 bp):
TAAACTCCCAACCCCTAAACTT
Found at i:18386919 original size:22 final size:22
Alignment explanation
Indices: 18386894--18386951 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 22
18386884 CCCCTGAATC
18386894 CTTAAACCC-TAA-ATCCTTAACT
1 CTTAAACCCATAACAT-C-TAACT
18386916 CTT-AACCTCATAACATCTAACT
1 CTTAAACC-CATAACATCTAACT
*
18386938 CTTAAACCCCTAAC
1 CTTAAACCCATAAC
18386952 CCCTAAACCT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
21 4 0.13
22 17 0.55
23 8 0.26
24 2 0.06
ACGTcount: A:0.36, C:0.34, G:0.00, T:0.29
Consensus pattern (22 bp):
CTTAAACCCATAACATCTAACT
Found at i:18387014 original size:22 final size:21
Alignment explanation
Indices: 18386974--18387014 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
18386964 AATCCCAACC
*
18386974 CTTAAACCATAATCTCTAATT
1 CTTAAACCATAATCCCTAATT
*
18386995 CTTAAACCCATACTCCCTAA
1 CTTAAA-CCATAATCCCTAA
18387015 ACCTTAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.37, C:0.32, G:0.00, T:0.32
Consensus pattern (21 bp):
CTTAAACCATAATCCCTAATT
Found at i:18387020 original size:22 final size:21
Alignment explanation
Indices: 18386945--18387022 Score: 59
Period size: 21 Copynumber: 3.7 Consensus size: 21
18386935 ACTCTTAAAC
* * *
18386945 CCCTAACCCCTAAACCTTCAAT
1 CCCTAAACCTTAAACCAT-AAT
*
18386967 CCC-AACCCTTAAACCATAAT
1 CCCTAAACCTTAAACCATAAT
* ** *
18386987 CTCTAATTCTTAAACCCATACT
1 CCCTAAACCTTAAA-CCATAAT
18387009 CCCTAAACCTTAAA
1 CCCTAAACCTTAAA
18387023 ATAGTAACTC
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
20 5 0.11
21 20 0.44
22 20 0.44
ACGTcount: A:0.36, C:0.38, G:0.00, T:0.26
Consensus pattern (21 bp):
CCCTAAACCTTAAACCATAAT
Found at i:18387252 original size:193 final size:194
Alignment explanation
Indices: 18387034--18387425 Score: 664
Period size: 193 Copynumber: 2.0 Consensus size: 194
18387024 TAGTAACTCC
18387034 TAAACCAGCCTTAAATCTTAAATTAATCATATACCCTAAACCAAAAACCCTAAACTATAGTGATA
1 TAAACCAGCCTTAAATCTTAAATTAATCATATACCCTAAACCAAAAACCCTAAACTATAGTGATA
* *
18387099 ATTAATTCAATATTTTAAAATTAATACTATTTCTTTTATGATTATATAAGAAATTATTTAATATC
66 ATTAATTCAATATTTTAAAATTAATACTATTTCTTTTATGATTATATAA-AAA-AATTTAATATA
* * * * *
18387164 TAAA-TT-AAAAATAATCAG-TCATGTACTCAAAAAACTTTAAAATTATTTTAAATAATAGTATT
129 TAAATTTAAAAAACAATCAGATCATATACCCAAAAAACATTAAAATTATTTAAAATAATAGTATT
18387226 T
194 T
18387227 TAAACCAGCCTTAAATCTTAAATTAATCATATACCCTAAACCAAAAACCCTAAACTATAGTGATA
1 TAAACCAGCCTTAAATCTTAAATTAATCATATACCCTAAACCAAAAACCCTAAACTATAGTGATA
18387292 ATTAATTCAATATTTTAAAATTAATACTATTTCTTTTATGATTATATAAAAAAATTTAATATATA
66 ATTAATTCAATATTTTAAAATTAATACTATTTCTTTTATGATTATATAAAAAAATTTAATATATA
18387357 AATTTAAAAAACAATCAGTAATCATATACCCAAAAAACATTAAAATTATTTAAAATAATAGTATT
131 AATTTAAAAAACAATCAG--ATCATATACCCAAAAAACATTAAAATTATTTAAAATAATAGTATT
18387422 T
194 T
18387423 TAA
1 TAA
18387426 TTTTTCCAAG
Statistics
Matches: 187, Mismatches: 7, Indels: 7
0.93 0.03 0.03
Matches are distributed among these distances:
191 13 0.07
192 5 0.03
193 125 0.67
196 44 0.24
ACGTcount: A:0.47, C:0.12, G:0.04, T:0.36
Consensus pattern (194 bp):
TAAACCAGCCTTAAATCTTAAATTAATCATATACCCTAAACCAAAAACCCTAAACTATAGTGATA
ATTAATTCAATATTTTAAAATTAATACTATTTCTTTTATGATTATATAAAAAAATTTAATATATA
AATTTAAAAAACAATCAGATCATATACCCAAAAAACATTAAAATTATTTAAAATAATAGTATTT
Found at i:18387616 original size:41 final size:41
Alignment explanation
Indices: 18387556--18387673 Score: 193
Period size: 41 Copynumber: 2.9 Consensus size: 41
18387546 TAAAATGTTT
* *
18387556 TTAGCGGCGC-TTTCTCAAAAGCGCTGCTAAAGCCCCTAGCA
1 TTAGCGGCGCTTTTC-CAAAAACGCCGCTAAAGCCCCTAGCA
*
18387597 TTAGCGGCGCTTTTCCAAAAATGCCGCTAAAGCCCCTAGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCTAGCA
18387638 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCC
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCC
18387674 GAAAGGTCAG
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
41 68 0.94
42 4 0.06
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.21
Consensus pattern (41 bp):
TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCTAGCA
Found at i:18389502 original size:125 final size:125
Alignment explanation
Indices: 18389072--18389878 Score: 961
Period size: 125 Copynumber: 6.5 Consensus size: 125
18389062 CGTTTGTAGT
* * *
18389072 GTTTTTTACCTAGCGCCACTATTGCTCGATCTATTGCGGCG-TTTTCACCTAGTACCGCTAATGC
1 GTTTTTTACCTAGCGCCGCTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCACCGCTAATGC
**
18389136 CACTAAAGACGCCACTTAAAATGGCGCTGTTTTGTTTAAAGT-AAA----TTTTTACAGC
66 CACTAAAGACGCCACTTAAAATGGCGCCATTTTGTTTAAAGTAAAATGTTTTTTTACAGC
* * * * * *
18389191 GTTTTTTACCTAGCGTCGCTAATGTTCTATCTATTGCAGCGTTTTTCACCTAGCGCCGCCAATGC
1 GTTTTTTACCTAGCGCCGCTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCACCGCTAATGC
* * *
18389256 CACTAAAGACGCTACTTAAAATGGCGCCGTTTTGTTTAAAGTAAAATGTTTTTTTTTGCAGC
66 CACTAAAGACGCCACTTAAAATGGCGCCATTTTGTTTAAAGTAAAATG--TTTTTTTACAGC
* **
18389318 GTTTTTTACCTAGCGCCGCTAATGCTTGATCTATTGCGGCGTTTTTCACCTAGTGCCGCTAATGC
1 GTTTTTTACCTAGCGCCGCTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCACCGCTAATGC
* * * * *** *
18389383 CATTAAAGACGCCACGTAAAACGGCGTCATTTTGTTTAAAGTAAAATGTTTTTTTGTGGT
66 CACTAAAGACGCCACTTAAAATGGCGCCATTTTGTTTAAAGTAAAATGTTTTTTTACAGC
* * ** *
18389443 GTTTTTTACCTAGCGCCGCTAACGCTCGATCTATTGTGGTTTTTTTCACCTAGTACCGCTAATGC
1 GTTTTTTACCTAGCGCCGCTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCACCGCTAATGC
* **
18389508 CACTAAAGACGCCACTTAAAATGGCACTGTTTTGTTTAAAGT-AAA---TTTTTTACAGC
66 CACTAAAGACGCCACTTAAAATGGCGCCATTTTGTTTAAAGTAAAATGTTTTTTTACAGC
* * * *
18389564 GTTTTTTACCTAGCGTCACTAATGCTCGATCTATTGCGGAGTTTTTCACCTAGCGCCGCTAATGC
1 GTTTTTTACCTAGCGCCGCTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCACCGCTAATGC
** * * * *
18389629 CACTAAAGACGCCACTTAAAACAGC-TCATTTTTGTTTAAAGTAAACTATTTTTTTACAAC
66 CACTAAAGACGCCACTTAAAATGGCGCCA-TTTTGTTTAAAGTAAAATGTTTTTTTACAGC
* ** * *
18389689 GTTTTTTACCTAGCGCCGCTAATGCTTGATCTATTGTAGCGTCTTTCACCTAGCATCGCTAATGC
1 GTTTTTTACCTAGCGCCGCTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCACCGCTAATGC
** * *
18389754 CACTAAAGACGCCACTTAAAATGATGCCATTTTGTTTAAAGTAAAATGTTTTTTTGCGGC
66 CACTAAAGACGCCACTTAAAATGGCGCCATTTTGTTTAAAGTAAAATGTTTTTTTACAGC
* * * * ** * * *
18389814 GTTTTTTACCTAGCGCCGGTAACGCTCGATCAATTGTGGTTTTTTTCACTTAGCGCCACTAATGC
1 GTTTTTTACCTAGCGCCGCTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCACCGCTAATGC
18389879 TCGATCTATT
Statistics
Matches: 583, Mismatches: 91, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
119 35 0.06
120 60 0.10
121 103 0.18
122 2 0.00
124 3 0.01
125 269 0.46
126 2 0.00
127 109 0.19
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (125 bp):
GTTTTTTACCTAGCGCCGCTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCACCGCTAATGC
CACTAAAGACGCCACTTAAAATGGCGCCATTTTGTTTAAAGTAAAATGTTTTTTTACAGC
Found at i:18389664 original size:246 final size:245
Alignment explanation
Indices: 18389072--18389878 Score: 993
Period size: 246 Copynumber: 3.3 Consensus size: 245
18389062 CGTTTGTAGT
* **
18389072 GTTTTTTACCTAGCGCCACTATTGCTCGATCTATTGCGGCG-TTTTCACCTAGTACCGCTAATGC
1 GTTTTTTACCTAGCGCCACTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCGCCGCTAATGC
* *
18389136 CACTAAAGACGCCACTTAAAATGGCGC-TGTTTTGTTTAAAGT-AAA---TTTTTACAGCGTTTT
66 CACTAAAGACGCCACTTAAAACGGCTCAT-TTTTGTTTAAAGTAAAATTTTTTTTACAGCGTTTT
* * * * * *
18389196 TTACCTAGCGTCGCTAATGTTCTATCTATTGCAGCGTTTTTCACCTAGCGCCGCCAATGCCACTA
130 TTACCTAGCGCCGCTAATGCTCGATCTATTGTAGCGTTTTTCACCTAGCACCGCTAATGCCACTA
*
18389261 AAGACGCTACTTAAAATGGCGCCGTTTTGTTTAAAGTAAAATGTTTTTTTTTGCAGC
195 AAGACGCCACTTAAAAT-G-GCCGTTTTGTTTAAAGTAAAA----TTTTTTTGCAGC
* * *
18389318 GTTTTTTACCTAGCGCCGCTAATGCTTGATCTATTGCGGCGTTTTTCACCTAGTGCCGCTAATGC
1 GTTTTTTACCTAGCGCCACTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCGCCGCTAATGC
* * *** *
18389383 CATTAAAGACGCCACGTAAAACGGCGTCA-TTTTGTTTAAAGTAAAATGTTTTTTTGTGGTGTTT
66 CACTAAAGACGCCACTTAAAACGGC-TCATTTTTGTTTAAAGTAAAAT-TTTTTTTACAGCGTTT
* * ** *
18389447 TTTACCTAGCGCCGCTAACGCTCGATCTATTGTGGTTTTTTTCACCTAGTACCGCTAATGCCACT
129 TTTACCTAGCGCCGCTAATGCTCGATCTATTGTAGCGTTTTTCACCTAGCACCGCTAATGCCACT
*
18389512 AAAGACGCCACTTAAAATGGCACTGTTTTGTTTAAAGT-AAA-TTTTTTACAGC
194 AAAGACGCCACTTAAAATGGC-C-GTTTTGTTTAAAGTAAAATTTTTTTGCAGC
* *
18389564 GTTTTTTACCTAGCGTCACTAATGCTCGATCTATTGCGGAGTTTTTCACCTAGCGCCGCTAATGC
1 GTTTTTTACCTAGCGCCACTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCGCCGCTAATGC
* * *
18389629 CACTAAAGACGCCACTTAAAACAGCTCATTTTTGTTTAAAGTAAACTATTTTTTTACAACGTTTT
66 CACTAAAGACGCCACTTAAAACGGCTCATTTTTGTTTAAAGTAAAAT-TTTTTTTACAGCGTTTT
* * *
18389694 TTACCTAGCGCCGCTAATGCTTGATCTATTGTAGCGTCTTTCACCTAGCATCGCTAATGCCACTA
130 TTACCTAGCGCCGCTAATGCTCGATCTATTGTAGCGTTTTTCACCTAGCACCGCTAATGCCACTA
* *
18389759 AAGACGCCACTTAAAATGATGCCATTTTGTTTAAAGTAAAATGTTTTTTTGCGGC
195 AAGACGCCACTTAAAATG--GCCGTTTTGTTTAAAGTAAAA--TTTTTTTGCAGC
** * * * ** * *
18389814 GTTTTTTACCTAGCGCCGGTAACGCTCGATCAATTGTGGTTTTTTTCACTTAGCGCCACTAATGC
1 GTTTTTTACCTAGCGCCACTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCGCCGCTAATGC
18389879 TCGATCTATT
Statistics
Matches: 483, Mismatches: 61, Indels: 30
0.84 0.11 0.05
Matches are distributed among these distances:
245 3 0.01
246 247 0.51
247 61 0.13
248 6 0.01
250 66 0.14
251 5 0.01
252 95 0.20
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (245 bp):
GTTTTTTACCTAGCGCCACTAATGCTCGATCTATTGCGGCGTTTTTCACCTAGCGCCGCTAATGC
CACTAAAGACGCCACTTAAAACGGCTCATTTTTGTTTAAAGTAAAATTTTTTTTACAGCGTTTTT
TACCTAGCGCCGCTAATGCTCGATCTATTGTAGCGTTTTTCACCTAGCACCGCTAATGCCACTAA
AGACGCCACTTAAAATGGCCGTTTTGTTTAAAGTAAAATTTTTTTGCAGC
Found at i:18389763 original size:371 final size:372
Alignment explanation
Indices: 18389064--18389862 Score: 1208
Period size: 371 Copynumber: 2.2 Consensus size: 372
18389054 AAAATGACCG
* * ** * **
18389064 TTTGTAGTGTTTTTTACCTAGCGCCACTATTGCTCGATCTATTGCGG-CGTTTTCACCTAGTACC
1 TTTGTGGTGTTTTTTACCTAGCGCCGCTAACGCTCGATCTATTGTGGTTTTTTTCACCTAGTACC
*
18389128 GCTAATGCCACTAAAGACGCCACTTAAAATGGCGCTGTTTTGTTTAAAGTAAATTTTTACAGCGT
66 GCTAATGCCACTAAAGACGCCACTTAAAATGGCACTGTTTTGTTTAAAGTAAATTTTTACAGCGT
* * * *
18389193 TTTTTACCTAGCGTCGCTAATGTTCTATCTATTGCAGCGTTTTTCACCTAGCGCCGCCAATGCCA
131 TTTTTACCTAGCGTCACTAATGCTCGATCTATTGCAGAGTTTTTCACCTAGCGCCGCCAATGCCA
* ** * * * * *
18389258 CTAAAGACGCTACTTAAAATGGCGCCGTTTTGTTTAAAGTAAAATGTTTTTTTTTGCAGCGTTTT
196 CTAAAGACGCCACTTAAAACAGCGCAGTTTTGTTTAAAGTAAAATCTATTTTTTTACAACGTTTT
* * ** *
18389323 TTACCTAGCGCCGCTAATGCTTGATCTATTGCGGCGTTTTTCACCTAGTGCCGCTAATGCCATTA
261 TTACCTAGCGCCGCTAATGCTTGATCTATTGCAGCGTCTTTCACCTAGCACCGCTAATGCCACTA
* *
18389388 AAGACGCCACGTAAAACGGCGTCATTTTGTTTAAAGTAAAATGTTTT
326 AAGACGCCACGTAAAACGACGCCATTTTGTTTAAAGTAAAATGTTTT
18389435 TTTGTGGTGTTTTTTACCTAGCGCCGCTAACGCTCGATCTATTGTGGTTTTTTTCACCTAGTACC
1 TTTGTGGTGTTTTTTACCTAGCGCCGCTAACGCTCGATCTATTGTGGTTTTTTTCACCTAGTACC
18389500 GCTAATGCCACTAAAGACGCCACTTAAAATGGCACTGTTTTGTTTAAAGTAAATTTTTTACAGCG
66 GCTAATGCCACTAAAGACGCCACTTAAAATGGCACTGTTTTGTTTAAAGTAAA-TTTTTACAGCG
* *
18389565 TTTTTTACCTAGCGTCACTAATGCTCGATCTATTGCGGAGTTTTTCACCTAGCGCCGCTAATGCC
130 TTTTTTACCTAGCGTCACTAATGCTCGATCTATTGCAGAGTTTTTCACCTAGCGCCGCCAATGCC
* *
18389630 ACTAAAGACGCCACTTAAAACAGCTCATTTTTGTTTAAAGT-AAA-CTATTTTTTTACAACGTTT
195 ACTAAAGACGCCACTTAAAACAGCGCAGTTTTGTTTAAAGTAAAATCTATTTTTTTACAACGTTT
* *
18389693 TTTACCTAGCGCCGCTAATGCTTGATCTATTGTAGCGTCTTTCACCTAGCATCGCTAATGCCACT
260 TTTACCTAGCGCCGCTAATGCTTGATCTATTGCAGCGTCTTTCACCTAGCACCGCTAATGCCACT
* * *
18389758 AAAGACGCCACTTAAAATGATGCCATTTTGTTTAAAGTAAAATGTTTT
325 AAAGACGCCACGTAAAACGACGCCATTTTGTTTAAAGTAAAATGTTTT
* * * *
18389806 TTTGCGGCGTTTTTTACCTAGCGCCGGTAACGCTCGATCAATTGTGGTTTTTTTCAC
1 TTTGTGGTGTTTTTTACCTAGCGCCGCTAACGCTCGATCTATTGTGGTTTTTTTCAC
18389863 TTAGCGCCAC
Statistics
Matches: 386, Mismatches: 40, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
371 211 0.55
372 70 0.18
373 105 0.27
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.37
Consensus pattern (372 bp):
TTTGTGGTGTTTTTTACCTAGCGCCGCTAACGCTCGATCTATTGTGGTTTTTTTCACCTAGTACC
GCTAATGCCACTAAAGACGCCACTTAAAATGGCACTGTTTTGTTTAAAGTAAATTTTTACAGCGT
TTTTTACCTAGCGTCACTAATGCTCGATCTATTGCAGAGTTTTTCACCTAGCGCCGCCAATGCCA
CTAAAGACGCCACTTAAAACAGCGCAGTTTTGTTTAAAGTAAAATCTATTTTTTTACAACGTTTT
TTACCTAGCGCCGCTAATGCTTGATCTATTGCAGCGTCTTTCACCTAGCACCGCTAATGCCACTA
AAGACGCCACGTAAAACGACGCCATTTTGTTTAAAGTAAAATGTTTT
Found at i:18389868 original size:40 final size:40
Alignment explanation
Indices: 18389815--18389906 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 40
18389805 TTTTGCGGCG
** *
18389815 TTTTTT-ACCTAGCGCCGGTAACGCTCGATCAATTGTGGT
1 TTTTTTCACCTAGCGCCACTAACGCTCGATCAATTGTGGC
* * *
18389854 TTTTTTCACTTAGCGCCACTAATGCTCGATCTATTGTGGC
1 TTTTTTCACCTAGCGCCACTAACGCTCGATCAATTGTGGC
*
18389894 ATTTTTCACCTAG
1 TTTTTTCACCTAG
18389907 TACTGCTAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 6 0.14
40 38 0.86
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.39
Consensus pattern (40 bp):
TTTTTTCACCTAGCGCCACTAACGCTCGATCAATTGTGGC
Found at i:18390733 original size:21 final size:21
Alignment explanation
Indices: 18390706--18390836 Score: 104
Period size: 21 Copynumber: 6.1 Consensus size: 21
18390696 CAAAATCCCT
18390706 AACCCTAAAACATAAACACTA
1 AACCCTAAAACATAAACACTA
* **
18390727 AATCCTAAAACCATAAATCTTTA
1 AACCCTAAAA-CATAAA-CACTA
*
18390750 AACCCT-AAACTATAAAAAACTA
1 AACCCTAAAAC-AT-AAACACTA
* *
18390772 AACCCCAAAACATAAACCCTA
1 AACCCTAAAACATAAACACTA
* *
18390793 AACCCTAAACCCTAAAC-CTTA
1 AACCCTAAAACATAAACAC-TA
* * *
18390814 AACCTTAAATCATAAACCCTA
1 AACCCTAAAACATAAACACTA
18390835 AA
1 AA
18390837 ATAAAATGAT
Statistics
Matches: 87, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
20 1 0.01
21 50 0.57
22 21 0.24
23 15 0.17
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (21 bp):
AACCCTAAAACATAAACACTA
Found at i:18390796 original size:7 final size:7
Alignment explanation
Indices: 18390702--18390836 Score: 74
Period size: 7 Copynumber: 19.0 Consensus size: 7
18390692 TTATCAAAAT
18390702 CCCT-AA
1 CCCTAAA
18390708 CCCTAAA
1 CCCTAAA
* *
18390715 ACATAAA
1 CCCTAAA
*
18390722 CACTAAA
1 CCCTAAA
*
18390729 TCCTAAAA
1 CCCT-AAA
*
18390737 CCATAAA
1 CCCTAAA
**
18390744 TCTTTAAA
1 -CCCTAAA
18390752 CCCTAAA
1 CCCTAAA
**
18390759 CTATAAAA
1 CCCT-AAA
**
18390767 AACTAAA
1 CCCTAAA
*
18390774 CCCCAAA
1 CCCTAAA
* *
18390781 ACATAAA
1 CCCTAAA
18390788 CCCTAAA
1 CCCTAAA
18390795 CCCTAAA
1 CCCTAAA
18390802 CCCTAAA
1 CCCTAAA
*
18390809 CCTTAAA
1 CCCTAAA
*
18390816 CCTTAAA
1 CCCTAAA
* *
18390823 TCATAAA
1 CCCTAAA
18390830 CCCTAAA
1 CCCTAAA
18390837 ATAAAATGAT
Statistics
Matches: 94, Mismatches: 31, Indels: 7
0.71 0.23 0.05
Matches are distributed among these distances:
6 4 0.04
7 76 0.81
8 14 0.15
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.19
Consensus pattern (7 bp):
CCCTAAA
Found at i:18390921 original size:41 final size:41
Alignment explanation
Indices: 18390862--18391014 Score: 141
Period size: 41 Copynumber: 3.7 Consensus size: 41
18390852 GCGACGTTTT
* * * *
18390862 CGCTACTACTAGATCTTTTGCGGCGTTTATGAT-AAAAACGC
1 CGCTACTAGTTGACCTTTTGCGGCATTT-TGATCAAAAACGC
* * *
18390903 CGCTACTAGTTGACCTTTTGCAGCATTTTTATCATAAACGC
1 CGCTACTAGTTGACCTTTTGCGGCATTTTGATCAAAAACGC
* *
18390944 CGCTACT-GCTTGACCTTTTGCGGCATTTTTATCATAAACGC
1 CGCTACTAG-TTGACCTTTTGCGGCATTTTGATCAAAAACGC
* * *
18390985 CACTA-TAGCTCTAACATTTTGCGGCATTTT
1 CGCTACTAG-T-TGACCTTTTGCGGCATTTT
18391015 CCTATTAGCG
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
40 5 0.05
41 75 0.77
42 17 0.18
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (41 bp):
CGCTACTAGTTGACCTTTTGCGGCATTTTGATCAAAAACGC
Found at i:18392615 original size:17 final size:17
Alignment explanation
Indices: 18392593--18392629 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
18392583 AACTCGCTTA
18392593 ATTTTAAATGTTTAACT
1 ATTTTAAATGTTTAACT
*
18392610 ATTTTAAATGTTTAATT
1 ATTTTAAATGTTTAACT
18392627 ATT
1 ATT
18392630 CAATTCACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (17 bp):
ATTTTAAATGTTTAACT
Found at i:18395254 original size:34 final size:34
Alignment explanation
Indices: 18395211--18395276 Score: 116
Period size: 34 Copynumber: 1.9 Consensus size: 34
18395201 TAAACTCTGT
18395211 TTATTTATTTCAG-CTAAACACTGATTAGTTTAGA
1 TTATTTATTTCAGTC-AAACACTGATTAGTTTAGA
18395245 TTATTTATTTCAGTCAAACACTGATTAGTTTA
1 TTATTTATTTCAGTCAAACACTGATTAGTTTA
18395277 CAACCTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 30 0.97
35 1 0.03
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (34 bp):
TTATTTATTTCAGTCAAACACTGATTAGTTTAGA
Found at i:18399456 original size:5 final size:5
Alignment explanation
Indices: 18399446--18399499 Score: 54
Period size: 5 Copynumber: 10.6 Consensus size: 5
18399436 AATGGAAATA
* * * * *
18399446 TTTAT TTTAT TTTAT TTTAT TCTAT TCTATT TTTAA CTTAT TTTCT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT
18399497 TTT
1 TTT
18399500 GAAATTAGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
5 36 0.90
6 4 0.10
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:18408542 original size:14 final size:14
Alignment explanation
Indices: 18408523--18408551 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
18408513 TAATGTCTAG
18408523 GCTGAGTTTAGAGT
1 GCTGAGTTTAGAGT
18408537 GCTGAGTTTAGAGT
1 GCTGAGTTTAGAGT
18408551 G
1 G
18408552 TTTCACCACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.38, T:0.34
Consensus pattern (14 bp):
GCTGAGTTTAGAGT
Found at i:18413575 original size:12 final size:12
Alignment explanation
Indices: 18413558--18413582 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18413548 TAATTTTCAA
18413558 AAATAAATATAT
1 AAATAAATATAT
18413570 AAATAAATATAT
1 AAATAAATATAT
18413582 A
1 A
18413583 TTATATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATAAATATAT
Found at i:18415166 original size:26 final size:26
Alignment explanation
Indices: 18415135--18415186 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
18415125 AAAATTTGTG
18415135 GTTATTTTGTTTTTTATGTTGCCGTC
1 GTTATTTTGTTTTTTATGTTGCCGTC
18415161 GTTATTTTGTTTTTTATGTTGCCGTC
1 GTTATTTTGTTTTTTATGTTGCCGTC
18415187 TTAGTCATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.08, C:0.12, G:0.19, T:0.62
Consensus pattern (26 bp):
GTTATTTTGTTTTTTATGTTGCCGTC
Found at i:18419809 original size:33 final size:33
Alignment explanation
Indices: 18419700--18419809 Score: 89
Period size: 33 Copynumber: 3.3 Consensus size: 33
18419690 AATTGACGGA
* *
18419700 TAAGACCATA-ACTGGGTTATGGCACTATGAACG
1 TAAGACCATAGA-TGGGCTATGGCATTATGAACG
* * * * * * *
18419733 TAAGACCATGGTTGGACCATGCCAGTGT-TTATATG
1 TAAGACCATAGATGGGCTATGGCA-T-TATGA-ACG
18419768 TAAGACCATAGATGGGCTATGGCATTATGAACG
1 TAAGACCATAGATGGGCTATGGCATTATGAACG
18419801 TAAGACCAT
1 TAAGACCAT
18419810 GGTTGGTTCA
Statistics
Matches: 56, Mismatches: 16, Indels: 10
0.68 0.20 0.12
Matches are distributed among these distances:
33 29 0.52
34 5 0.09
35 22 0.39
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (33 bp):
TAAGACCATAGATGGGCTATGGCATTATGAACG
Found at i:18419809 original size:68 final size:68
Alignment explanation
Indices: 18419700--18419877 Score: 225
Period size: 68 Copynumber: 2.6 Consensus size: 68
18419690 AATTGACGGA
* * * *
18419700 TAAGACCATA-ACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGCCAGTGTTTA
1 TAAGACCATAGA-TGGGCTATGGCATTATGAACGTAAGACCATGGTTGGACCATGCAAATGTTTA
18419764 TATG
65 TATG
** *
18419768 TAAGACCATAGATGGGCTATGGCATTATGAACGTAAGACCATGGTTGGTTCATGGAAATGTTTAT
1 TAAGACCATAGATGGGCTATGGCATTATGAACGTAAGACCATGGTTGGACCATGCAAATGTTTAT
18419833 ATG
66 ATG
* * * *
18419836 TAAGACTATAGCTAGGCTATGGCATTCTG-ACGATAAGACCAT
1 TAAGACCATAGATGGGCTATGGCATTATGAACG-TAAGACCAT
18419878 AACTGGGTTA
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
67 3 0.03
68 93 0.96
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (68 bp):
TAAGACCATAGATGGGCTATGGCATTATGAACGTAAGACCATGGTTGGACCATGCAAATGTTTAT
ATG
Found at i:18423629 original size:43 final size:42
Alignment explanation
Indices: 18423549--18423711 Score: 157
Period size: 43 Copynumber: 3.8 Consensus size: 42
18423539 CAAAAGTTCG
* * * *
18423549 TACAATGCCAACGTCCCAGACATGGTCTTTCATGTAATCAAA
1 TACAATGCCAATGTCCCAGAAATGGTCTTACACGTAATCAAA
* * * * * *
18423591 TAACGATGTCACTGTCCCAGATAGGGTCTTACACGTAATCATA
1 T-ACAATGCCAATGTCCCAGAAATGGTCTTACACGTAATCAAA
*
18423634 TACAATGCCAATGTCCTAGAAATGGTCTTACACGTAAATCTTAAA
1 TACAATGCCAATGTCCCAGAAATGGTCTTACACGT-AATC--AAA
* * *
18423679 T-CGATGCCAACGTCCCAGACATGGTCTTACACG
1 TACAATGCCAATGTCCCAGAAATGGTCTTACACG
18423712 ATATCACATT
Statistics
Matches: 97, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 29 0.30
43 37 0.38
44 28 0.29
45 3 0.03
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGAAATGGTCTTACACGTAATCAAA
Found at i:18427403 original size:33 final size:32
Alignment explanation
Indices: 18427358--18427518 Score: 133
Period size: 33 Copynumber: 4.8 Consensus size: 32
18427348 TAGTGTTTAT
*
18427358 ATGTAAGACCATAGCTGGGCTATGGCATTCTG
1 ATGTAAGACCATAGCTGGGTTATGGCATTCTG
* * *
18427390 ATGATAAGACCATAACTGGGTTATGGCACTATG
1 ATG-TAAGACCATAGCTGGGTTATGGCATTCTG
* * * * * * * *
18427423 AACGTAAGATCATGGTTGGATCATGGCAATGTTTAT
1 -ATGTAAGACCATAGCTGGGTTATGGC-AT-TCT-G
* *
18427459 ATGTAAGACCATAGTTGGGTTATGACATTCTG
1 ATGTAAGACCATAGCTGGGTTATGGCATTCTG
*
18427491 ATGATAAGACCATAACTGGGTTATGGCA
1 ATG-TAAGACCATAGCTGGGTTATGGCA
18427519 CTATGAATGT
Statistics
Matches: 98, Mismatches: 25, Indels: 11
0.73 0.19 0.08
Matches are distributed among these distances:
32 6 0.06
33 65 0.66
34 5 0.05
35 22 0.22
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (32 bp):
ATGTAAGACCATAGCTGGGTTATGGCATTCTG
Found at i:18427466 original size:101 final size:101
Alignment explanation
Indices: 18427291--18427530 Score: 390
Period size: 101 Copynumber: 2.4 Consensus size: 101
18427281 TGAATTAACG
* * * *
18427291 GATAAGACCATAACTGGTTTATGGCACTATGAACGTAAGACCATGGTTGGGCCATGGTAGTGTTT
1 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGGCAATGTTT
*
18427356 ATATGTAAGACCATAGCTGGGCTATGGCATTCTGAT
66 ATATGTAAGACCATAGCTGGGCTATGACATTCTGAT
* *
18427392 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGATCATGGTTGGATCATGGCAATGTTT
1 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGGCAATGTTT
* *
18427457 ATATGTAAGACCATAGTTGGGTTATGACATTCTGAT
66 ATATGTAAGACCATAGCTGGGCTATGACATTCTGAT
*
18427493 GATAAGACCATAACTGGGTTATGGCACTATGAATGTAA
1 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAA
18427531 AGGATGAAGT
Statistics
Matches: 129, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 129 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (101 bp):
GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGGCAATGTTT
ATATGTAAGACCATAGCTGGGCTATGACATTCTGAT
Found at i:18432499 original size:25 final size:25
Alignment explanation
Indices: 18432461--18432536 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
18432451 GAACACACCA
* *
18432461 TAGCTCGTAAGAGCATCCCGTTATT
1 TAGCTCTTATGAGCATCCCGTTATT
* *
18432486 TAGCTCTTATGAGCATCCCGATATA
1 TAGCTCTTATGAGCATCCCGTTATT
* * *
18432511 TGGCTCTCT-TGAGCTTCCTGTTATT
1 TAGCTCT-TATGAGCATCCCGTTATT
18432536 T
1 T
18432537 GGCTTTCACG
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 40 0.98
26 1 0.02
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (25 bp):
TAGCTCTTATGAGCATCCCGTTATT
Found at i:18432539 original size:25 final size:25
Alignment explanation
Indices: 18432471--18432540 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
18432461 TAGCTCGTAA
*
18432471 GAGCATCCCGTTATTTAGCTCTTAT
1 GAGCATCCCGTTATTTGGCTCTTAT
* *
18432496 GAGCATCCCGATATATGGCTCTCT-T
1 GAGCATCCCGTTATTTGGCTCT-TAT
* *
18432521 GAGCTTCCTGTTATTTGGCT
1 GAGCATCCCGTTATTTGGCT
18432541 TTCACGAGCT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
25 36 0.97
26 1 0.03
ACGTcount: A:0.17, C:0.24, G:0.20, T:0.39
Consensus pattern (25 bp):
GAGCATCCCGTTATTTGGCTCTTAT
Found at i:18432563 original size:25 final size:25
Alignment explanation
Indices: 18432542--18432627 Score: 70
Period size: 25 Copynumber: 3.5 Consensus size: 25
18432532 TATTTGGCTT
*
18432542 TCACGAGCTTCTCGATAATTGGTTC
1 TCACGAGCTTCCCGATAATTGGTTC
* **
18432567 TCATGAGCTTCCCGATTAA-TGACTC
1 TCACGAGCTTCCCGA-TAATTGGTTC
*
18432592 TC-CGAAGCTTCCCGAT-ATTGGCTC
1 TCACG-AGCTTCCCGATAATTGGTTC
* *
18432616 GCATGAGCTTCC
1 TCACGAGCTTCC
18432628 TAATTATGGC
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
23 1 0.02
24 15 0.31
25 30 0.61
26 3 0.06
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.31
Consensus pattern (25 bp):
TCACGAGCTTCCCGATAATTGGTTC
Found at i:18432637 original size:24 final size:24
Alignment explanation
Indices: 18432610--18432690 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 24
18432600 TTCCCGATAT
18432610 TGGCTCGCATGAGCTTCCTAATTA
1 TGGCTCGCATGAGCTTCCTAATTA
** * *
18432634 TGGCTCTTATGAGCTTTCCGTTA-CA
1 TGGCTCGCATGAGC-TTCC-TAATTA
* * *
18432659 TGGCTCACATGAGCTTCCCATTTCA
1 TGGCTCGCATGAGCTTCCTAATT-A
18432684 TGGCTCG
1 TGGCTCG
18432691 AAAAAGCTTC
Statistics
Matches: 42, Mismatches: 11, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
24 16 0.38
25 24 0.57
26 2 0.05
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (24 bp):
TGGCTCGCATGAGCTTCCTAATTA
Found at i:18432661 original size:25 final size:25
Alignment explanation
Indices: 18432633--18432689 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
18432623 CTTCCTAATT
** * *
18432633 ATGGCTCTTATGAGCTTTCCGTTAC
1 ATGGCTCACATGAGCTTCCCATTAC
*
18432658 ATGGCTCACATGAGCTTCCCATTTC
1 ATGGCTCACATGAGCTTCCCATTAC
18432683 ATGGCTC
1 ATGGCTC
18432690 GAAAAAGCTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.35
Consensus pattern (25 bp):
ATGGCTCACATGAGCTTCCCATTAC
Found at i:18435892 original size:50 final size:50
Alignment explanation
Indices: 18435785--18435897 Score: 127
Period size: 50 Copynumber: 2.3 Consensus size: 50
18435775 TGATAGGTAT
* * * * **
18435785 CACGTAAGACCATGTCTAGGACATGACGTTGGTACTGAGATGAGAGGTCC
1 CACGTAAGACCATGTCTAGGACATGACATGGGCACCGAGATGAGAACTCC
* * * *
18435835 CCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCT
1 CACGTAAGACCATGTCTAGGACATGACATGGGCACCGAGATGAGAACTCC
*
18435885 CATGTAAGACCAT
1 CACGTAAGACCAT
18435898 ATTTGGGATA
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (50 bp):
CACGTAAGACCATGTCTAGGACATGACATGGGCACCGAGATGAGAACTCC
Found at i:18436195 original size:20 final size:20
Alignment explanation
Indices: 18436170--18436208 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
18436160 TGAGTTGTTT
18436170 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
18436190 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
18436209 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:18436481 original size:17 final size:17
Alignment explanation
Indices: 18436459--18436491 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18436449 ATAGAAAGTC
18436459 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
18436476 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
18436492 AAATCTGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.24
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:18440923 original size:17 final size:17
Alignment explanation
Indices: 18440901--18440951 Score: 84
Period size: 17 Copynumber: 2.9 Consensus size: 17
18440891 ATAGAAAGTC
18440901 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
18440918 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
*
18440935 AAAGCTATGGGTTATCA
1 AAAGATATGGG-TATCA
18440952 AAATCGAGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 27 0.84
18 5 0.16
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.25
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:18443489 original size:146 final size:146
Alignment explanation
Indices: 18443225--18443504 Score: 560
Period size: 146 Copynumber: 1.9 Consensus size: 146
18443215 CAAGACTCAA
18443225 AAACAATTTATCCTTGATTAAAATCATGTTGGTGGAAAGGGATGATCATGATCATTAACTCCCAC
1 AAACAATTTATCCTTGATTAAAATCATGTTGGTGGAAAGGGATGATCATGATCATTAACTCCCAC
18443290 TAAGTATGTCTTAAATAAATGTTAACCATTGATTTAGTTTCTAATTAAGCTTAATTTAGTTTTAT
66 TAAGTATGTCTTAAATAAATGTTAACCATTGATTTAGTTTCTAATTAAGCTTAATTTAGTTTTAT
18443355 CCACTAAGTATGTCTT
131 CCACTAAGTATGTCTT
18443371 AAACAATTTATCCTTGATTAAAATCATGTTGGTGGAAAGGGATGATCATGATCATTAACTCCCAC
1 AAACAATTTATCCTTGATTAAAATCATGTTGGTGGAAAGGGATGATCATGATCATTAACTCCCAC
18443436 TAAGTATGTCTTAAATAAATGTTAACCATTGATTTAGTTTCTAATTAAGCTTAATTTAGTTTTAT
66 TAAGTATGTCTTAAATAAATGTTAACCATTGATTTAGTTTCTAATTAAGCTTAATTTAGTTTTAT
18443501 CCAC
131 CCAC
18443505 ATGTGTATAT
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
146 134 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.39
Consensus pattern (146 bp):
AAACAATTTATCCTTGATTAAAATCATGTTGGTGGAAAGGGATGATCATGATCATTAACTCCCAC
TAAGTATGTCTTAAATAAATGTTAACCATTGATTTAGTTTCTAATTAAGCTTAATTTAGTTTTAT
CCACTAAGTATGTCTT
Found at i:18463934 original size:43 final size:43
Alignment explanation
Indices: 18463881--18463967 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
18463871 AACAAGACGA
* *
18463881 TCGCCTTCATCTTTAGACAAAGTTGATGACCTAATCATTGGTG
1 TCGCCCTCATCTTTAGACAAAGCTGATGACCTAATCATTGGTG
18463924 TCGCCCTCATCTTTAGACAAAGCTGATGACCTAATCATTGGTG
1 TCGCCCTCATCTTTAGACAAAGCTGATGACCTAATCATTGGTG
18463967 T
1 T
18463968 GTGGACACTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33
Consensus pattern (43 bp):
TCGCCCTCATCTTTAGACAAAGCTGATGACCTAATCATTGGTG
Found at i:18468793 original size:22 final size:23
Alignment explanation
Indices: 18468768--18468810 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
18468758 TAGATTTTAA
18468768 TAAATTTTATAAA-A-AGATAAAT
1 TAAATTTT-TAAATAGAGATAAAT
18468790 TAAATTTTTAAATAGAGATAA
1 TAAATTTTTAAATAGAGATAA
18468811 TTTTTAATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
22 9 0.47
23 6 0.32
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (23 bp):
TAAATTTTTAAATAGAGATAAAT
Found at i:18470125 original size:14 final size:12
Alignment explanation
Indices: 18470080--18470150 Score: 54
Period size: 13 Copynumber: 5.4 Consensus size: 12
18470070 CTTAACAAAT
18470080 ATTTTAATTA-A
1 ATTTTAATTATA
*
18470091 ATATTTAATAATAA
1 AT-TTTAATTAT-A
18470105 ATTTTAATTGATA
1 ATTTTAATT-ATA
18470118 ATTCTTAAATTATTA
1 ATT-TT-AATTA-TA
*
18470133 TTTTTAATTTATA
1 ATTTTAA-TTATA
18470146 ATTTT
1 ATTTT
18470151 GATTGGTACA
Statistics
Matches: 48, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
11 2 0.04
12 7 0.15
13 18 0.38
14 13 0.27
15 8 0.17
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (12 bp):
ATTTTAATTATA
Found at i:18483743 original size:2 final size:2
Alignment explanation
Indices: 18483738--18483766 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
18483728 TGAAACCAAA
18483738 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
18483767 AAGAAACAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:18485325 original size:3 final size:3
Alignment explanation
Indices: 18485319--18485370 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
18485309 CGTTGTTGCA
* *
18485319 CTT CTT CTT CTT CTT TTT CTT CTT TTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
18485367 CTT C
1 CTT C
18485371 GGTCTTCACT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
CTT
Found at i:18490984 original size:12 final size:12
Alignment explanation
Indices: 18490969--18490994 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18490959 TGGCACACGG
18490969 CCTAACACAAGC
1 CCTAACACAAGC
18490981 CCTAACACAAGC
1 CCTAACACAAGC
18490993 CC
1 CC
18490995 GTGTGACTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.46, G:0.08, T:0.08
Consensus pattern (12 bp):
CCTAACACAAGC
Found at i:18492248 original size:23 final size:23
Alignment explanation
Indices: 18492198--18492242 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
18492188 CGACATTTTT
*
18492198 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
18492221 TGTAATACCCCGAAAATTACTA
1 TGTAATACCCCGAAAATTACTA
18492243 TAGTAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAC
Found at i:18495792 original size:6 final size:6
Alignment explanation
Indices: 18495773--18495817 Score: 72
Period size: 6 Copynumber: 7.3 Consensus size: 6
18495763 TCTAAATGAA
*
18495773 TTCATT TCTCATT TTCATT TTCATT TTCATT TTCATT TCCATT TT
1 TTCATT T-TCATT TTCATT TTCATT TTCATT TTCATT TTCATT TT
18495818 GAGAAAACCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 30 0.83
7 6 0.17
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (6 bp):
TTCATT
Found at i:18495868 original size:6 final size:6
Alignment explanation
Indices: 18495857--18495886 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
18495847 CCATTTTATC
*
18495857 CATTTT CATTTT CCTTTT CATTTT CATTTT
1 CATTTT CATTTT CATTTT CATTTT CATTTT
18495887 GGAGAAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.13, C:0.20, G:0.00, T:0.67
Consensus pattern (6 bp):
CATTTT
Found at i:18503802 original size:2 final size:2
Alignment explanation
Indices: 18503766--18503794 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
18503756 TATGGTTGTA
18503766 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18503795 GGATATATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:18505243 original size:20 final size:19
Alignment explanation
Indices: 18505218--18505270 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
18505208 TATTTTTTTA
*
18505218 ACTTATTAATTTTTTAGTTG
1 ACTTATTAATTTTGTA-TTG
* *
18505238 ACTTATTATATATTGTATTT
1 ACTTATTA-ATTTTGTATTG
18505258 ACTTATTAATTTT
1 ACTTATTAATTTT
18505271 ATTATGTATG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.14
20 18 0.64
21 6 0.21
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (19 bp):
ACTTATTAATTTTGTATTG
Found at i:18505273 original size:17 final size:17
Alignment explanation
Indices: 18505209--18505273 Score: 51
Period size: 20 Copynumber: 3.5 Consensus size: 17
18505199 ATTTCACTCT
18505209 ATTTT-TTTAACTTATTA
1 ATTTTATTT-ACTTATTA
*
18505226 ATTTTTTAGTTGACTTATTA
1 A--TTTTA-TTTACTTATTA
18505246 TATATTGTATTTACTTATTA
1 -AT-TT-TATTTACTTATTA
18505266 ATTTTATT
1 ATTTTATT
18505274 ATGTATGATT
Statistics
Matches: 39, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
17 5 0.13
18 2 0.05
19 7 0.18
20 20 0.51
21 5 0.13
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.63
Consensus pattern (17 bp):
ATTTTATTTACTTATTA
Found at i:18505619 original size:13 final size:13
Alignment explanation
Indices: 18505601--18505627 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18505591 TAGAAAAAAA
18505601 TGTGAACTCCTCC
1 TGTGAACTCCTCC
18505614 TGTGAACTCCTCC
1 TGTGAACTCCTCC
18505627 T
1 T
18505628 TTTATATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTGAACTCCTCC
Found at i:18505661 original size:6 final size:6
Alignment explanation
Indices: 18505652--18505681 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
18505642 TGTGTGTGTG
18505652 TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT
1 TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT
18505682 AACAACTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.67
Consensus pattern (6 bp):
TTTGAT
Found at i:18508717 original size:13 final size:13
Alignment explanation
Indices: 18508699--18508723 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18508689 TAAAACCAAA
18508699 AAATGTTTAGTTG
1 AAATGTTTAGTTG
18508712 AAATGTTTAGTT
1 AAATGTTTAGTT
18508724 TGAATCATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
AAATGTTTAGTTG
Found at i:18511764 original size:43 final size:44
Alignment explanation
Indices: 18511702--18511788 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 44
18511692 TTTTGAGAAA
18511702 ATGAGTCCGGGAGTCAATTACGCACGAGGAAGGGTTAGCACCCT
1 ATGAGTCCGGGAGTCAATTACGCACGAGGAAGGGTTAGCACCCT
18511746 ATGAGTCC-GGAGTCAATTACGCACGAGGAAGGGTTAGCACCCT
1 ATGAGTCCGGGAGTCAATTACGCACGAGGAAGGGTTAGCACCCT
18511789 CGTAACGCCC
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 35 0.81
44 8 0.19
ACGTcount: A:0.28, C:0.23, G:0.31, T:0.18
Consensus pattern (44 bp):
ATGAGTCCGGGAGTCAATTACGCACGAGGAAGGGTTAGCACCCT
Found at i:18515567 original size:13 final size:13
Alignment explanation
Indices: 18515549--18515575 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18515539 TAGCCTCTCC
18515549 ATTTTTTTTTTGG
1 ATTTTTTTTTTGG
18515562 ATTTTTTTTTTGG
1 ATTTTTTTTTTGG
18515575 A
1 A
18515576 ATCAAAGCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.11, C:0.00, G:0.15, T:0.74
Consensus pattern (13 bp):
ATTTTTTTTTTGG
Found at i:18526093 original size:16 final size:16
Alignment explanation
Indices: 18526060--18526119 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
18526050 ACAAATGTAT
*
18526060 AAATATATATAATATA
1 AAATATATAAAATATA
18526076 AAATATATAAAAGT-TA
1 AAATATATAAAA-TATA
* * *
18526092 AAAGAGATAAAATAAA
1 AAATATATAAAATATA
*
18526108 AAAAATATAAAA
1 AAATATATAAAA
18526120 CGTATGTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
15 1 0.03
16 34 0.94
17 1 0.03
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (16 bp):
AAATATATAAAATATA
Found at i:18526920 original size:24 final size:24
Alignment explanation
Indices: 18526893--18526940 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
18526883 AAACTTTCCA
*
18526893 ATATTT-TCTTTTGTATTTCTCTGT
1 ATATTTCTCTGTT-TATTTCTCTGT
18526917 ATATTTCTCTGTTTATTTCTCTGT
1 ATATTTCTCTGTTTATTTCTCTGT
18526941 TTCCCCGTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.12, C:0.15, G:0.08, T:0.65
Consensus pattern (24 bp):
ATATTTCTCTGTTTATTTCTCTGT
Found at i:18526941 original size:12 final size:12
Alignment explanation
Indices: 18526906--18526942 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
18526896 TTTTCTTTTG
*
18526906 TATTTCTCTGTA
1 TATTTCTCTGTT
18526918 TATTTCTCTGTT
1 TATTTCTCTGTT
18526930 TATTTCTCTGTT
1 TATTTCTCTGTT
18526942 T
1 T
18526943 CCCCGTCCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.11, C:0.16, G:0.08, T:0.65
Consensus pattern (12 bp):
TATTTCTCTGTT
Found at i:18527446 original size:9 final size:10
Alignment explanation
Indices: 18527428--18527498 Score: 52
Period size: 10 Copynumber: 6.7 Consensus size: 10
18527418 ATTTAGCAAG
18527428 TATAAAAAAT
1 TATAAAAAAT
18527438 TATAAAAATAT
1 TATAAAAA-AT
18527449 TATAAAAAAAAGT
1 TAT--AAAAAA-T
*
18527462 TATAGAAAAT
1 TATAAAAAAT
* *
18527472 AATATAAAAT
1 TATAAAAAAT
** *
18527482 TATTCAAATT
1 TATAAAAAAT
18527492 TATAAAA
1 TATAAAA
18527499 GAATATAGAT
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
10 28 0.58
11 10 0.21
12 1 0.02
13 9 0.19
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (10 bp):
TATAAAAAAT
Found at i:18527450 original size:11 final size:11
Alignment explanation
Indices: 18527428--18527485 Score: 55
Period size: 11 Copynumber: 5.1 Consensus size: 11
18527418 ATTTAGCAAG
18527428 TATAAAAA-AT
1 TATAAAAATAT
18527438 TATAAAAATAT
1 TATAAAAATAT
*
18527449 TATAAAAAAAAGT
1 TAT-AAAAATA-T
*
18527462 TATAGAAAATAA
1 TATA-AAAATAT
*
18527474 TATAAAATTAT
1 TATAAAAATAT
18527485 T
1 T
18527486 CAAATTTATA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
10 8 0.21
11 11 0.28
12 11 0.28
13 9 0.23
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (11 bp):
TATAAAAATAT
Found at i:18527464 original size:24 final size:24
Alignment explanation
Indices: 18527431--18527480 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 24
18527421 TAGCAAGTAT
*
18527431 AAAAAATTATA-AAAATATTATAA
1 AAAAAATTATAGAAAATAATATAA
18527454 AAAAAAGTTATAGAAAATAATATAA
1 AAAAAA-TTATAGAAAATAATATAA
18527479 AA
1 AA
18527481 TTATTCAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 6 0.25
24 5 0.21
25 13 0.54
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (24 bp):
AAAAAATTATAGAAAATAATATAA
Found at i:18530098 original size:15 final size:15
Alignment explanation
Indices: 18530080--18530128 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
18530070 AATGACAATT
18530080 ATAATAAATAATATA
1 ATAATAAATAATATA
*
18530095 ATAATACATAATGAT-
1 ATAATAAATAAT-ATA
18530110 ATAATATAATAATA-A
1 ATAATA-AATAATATA
18530125 ATAA
1 ATAA
18530129 ATAATTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
15 22 0.76
16 7 0.24
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (15 bp):
ATAATAAATAATATA
Found at i:18530099 original size:8 final size:8
Alignment explanation
Indices: 18530080--18530133 Score: 55
Period size: 7 Copynumber: 7.2 Consensus size: 8
18530070 AATGACAATT
18530080 ATAATA-A
1 ATAATATA
18530087 ATAATATA
1 ATAATATA
*
18530095 ATAATA-C
1 ATAATATA
18530102 ATAATGAT-
1 ATAAT-ATA
18530110 ATAATATA
1 ATAATATA
18530118 ATAATA-A
1 ATAATATA
18530125 ATAA-ATA
1 ATAATATA
18530132 AT
1 AT
18530134 TAAATAGTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
6 1 0.02
7 21 0.51
8 19 0.46
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (8 bp):
ATAATATA
Found at i:18530106 original size:34 final size:34
Alignment explanation
Indices: 18530061--18530133 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
18530051 ACATATGTAC
*
18530061 AAATAA-A-ATAATGACA-ATTATAATAA-ATAAT
1 AAATAATACATAATGACATAATATAATAATA-AAT
*
18530092 ATAATAATACATAATGATATAATATAATAATAAAT
1 A-AATAATACATAATGACATAATATAATAATAAAT
18530127 AAATAAT
1 AAATAAT
18530134 TAAATAGTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
31 1 0.03
32 5 0.14
33 1 0.03
34 14 0.40
35 13 0.37
36 1 0.03
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (34 bp):
AAATAATACATAATGACATAATATAATAATAAAT
Found at i:18531743 original size:45 final size:44
Alignment explanation
Indices: 18531692--18531779 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
18531682 CTTCAATATA
* * *
18531692 CTCCACTGCAACTTCAGGGAGGTAAAATCTGCCATCTTCGATCTG
1 CTCCACTACAACTT-AGGGAGGCAAAATCTGCAATCTTCGATCTG
** *
18531737 CTCCACTACTGCTTAGGGAGGCAAAATCTGTAATCTTCGATCT
1 CTCCACTACAACTTAGGGAGGCAAAATCTGCAATCTTCGATCT
18531780 ATTTCACCGC
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 26 0.70
45 11 0.30
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (44 bp):
CTCCACTACAACTTAGGGAGGCAAAATCTGCAATCTTCGATCTG
Found at i:18544873 original size:15 final size:15
Alignment explanation
Indices: 18544855--18544903 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
18544845 AATGACAATT
18544855 ATAATAAATAATATA
1 ATAATAAATAATATA
*
18544870 ATAATACATAATGAT-
1 ATAATAAATAAT-ATA
18544885 ATAATATAATAATA-A
1 ATAATA-AATAATATA
18544900 ATAA
1 ATAA
18544904 ATAATTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
15 22 0.76
16 7 0.24
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (15 bp):
ATAATAAATAATATA
Found at i:18544874 original size:8 final size:8
Alignment explanation
Indices: 18544855--18544908 Score: 55
Period size: 7 Copynumber: 7.2 Consensus size: 8
18544845 AATGACAATT
18544855 ATAATA-A
1 ATAATATA
18544862 ATAATATA
1 ATAATATA
*
18544870 ATAATA-C
1 ATAATATA
18544877 ATAATGAT-
1 ATAAT-ATA
18544885 ATAATATA
1 ATAATATA
18544893 ATAATA-A
1 ATAATATA
18544900 ATAA-ATA
1 ATAATATA
18544907 AT
1 AT
18544909 TAAATAGTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
6 1 0.02
7 21 0.51
8 19 0.46
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (8 bp):
ATAATATA
Found at i:18544881 original size:34 final size:34
Alignment explanation
Indices: 18544836--18544908 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
18544826 ACATATGTAC
*
18544836 AAATAA-A-ATAATGACA-ATTATAATAA-ATAAT
1 AAATAATACATAATGACATAATATAATAATA-AAT
*
18544867 ATAATAATACATAATGATATAATATAATAATAAAT
1 A-AATAATACATAATGACATAATATAATAATAAAT
18544902 AAATAAT
1 AAATAAT
18544909 TAAATAGTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
31 1 0.03
32 5 0.14
33 1 0.03
34 14 0.40
35 13 0.37
36 1 0.03
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (34 bp):
AAATAATACATAATGACATAATATAATAATAAAT
Found at i:18554141 original size:30 final size:29
Alignment explanation
Indices: 18554102--18554164 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 29
18554092 ATGGATTTAA
18554102 ATTACTTATTATTTAAGTAAATAGATATTT
1 ATTACTTATTATTTAAGTAAA-AGATATTT
* *
18554132 ATTATTTATTTTTTAAGTAAAAGATATTT
1 ATTACTTATTATTTAAGTAAAAGATATTT
18554161 ATTA
1 ATTA
18554165 ATTAAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 12 0.39
30 19 0.61
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (29 bp):
ATTACTTATTATTTAAGTAAAAGATATTT
Found at i:18554827 original size:17 final size:18
Alignment explanation
Indices: 18554805--18554840 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
18554795 TAAATGAGTC
18554805 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
18554822 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
18554840 A
1 A
18554841 TAAAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:18567105 original size:86 final size:86
Alignment explanation
Indices: 18567004--18567174 Score: 270
Period size: 86 Copynumber: 2.0 Consensus size: 86
18566994 GGGTTTTAAT
* * * *
18567004 TTTTTTTGTAGTATTATTTATTTGTATGTTTGTCACTTAATTAGTATAAAAAAAACTAAATAAAT
1 TTTTTTTGAAGTATTATTTATTTGTATGCTTCTCACTTAATTAATATAAAAAAAACTAAATAAAT
18567069 ACTGAAATGGTATATTTGAGA
66 ACTGAAATGGTATATTTGAGA
* * *
18567090 TTTTTTTGAATTATTATTTATTTGTATGCTTCTTACTTAATTAATATAAAAAAAACTAATTAAAT
1 TTTTTTTGAAGTATTATTTATTTGTATGCTTCTCACTTAATTAATATAAAAAAAACTAAATAAAT
*
18567155 ACTGAAATGGTATGTTTGAG
66 ACTGAAATGGTATATTTGAG
18567175 GCTTTCAAGG
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 77 1.00
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.46
Consensus pattern (86 bp):
TTTTTTTGAAGTATTATTTATTTGTATGCTTCTCACTTAATTAATATAAAAAAAACTAAATAAAT
ACTGAAATGGTATATTTGAGA
Found at i:18572936 original size:27 final size:27
Alignment explanation
Indices: 18572898--18572953 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
18572888 ATTAATTTAT
18572898 TTTGTAAAGTAATTATTTATTTTGAAC
1 TTTGTAAAGTAATTATTTATTTTGAAC
18572925 TTTGTAAAGTAATTATTTATTTTGAAC
1 TTTGTAAAGTAATTATTTATTTTGAAC
18572952 TT
1 TT
18572954 AGCAAATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.54
Consensus pattern (27 bp):
TTTGTAAAGTAATTATTTATTTTGAAC
Found at i:18582924 original size:12 final size:13
Alignment explanation
Indices: 18582896--18582924 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
18582886 AAGATTAACT
18582896 AATTAAGGGATTA
1 AATTAAGGGATTA
18582909 AATTAAGGGA-TA
1 AATTAAGGGATTA
18582921 AATT
1 AATT
18582925 GCAAAAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.48, C:0.00, G:0.21, T:0.31
Consensus pattern (13 bp):
AATTAAGGGATTA
Found at i:18583481 original size:21 final size:21
Alignment explanation
Indices: 18583412--18583576 Score: 90
Period size: 21 Copynumber: 8.0 Consensus size: 21
18583402 CGGGTGGATC
**
18583412 AGCTCTTACGAGCTTCTGTGA
1 AGCTCTTACGAGCTTCTGTTT
*
18583433 AGCTCTTACGAGCTTCTTTTTT
1 AGCTCTTACGAGCTTC-TGTTT
* **
18583455 AACTCTTTTGAGCTTCTGTTT
1 AGCTCTTACGAGCTTCTGTTT
**
18583476 AGCTCTTATAAGCTTCTG-TT
1 AGCTCTTACGAGCTTCTGTTT
* * * * * * *
18583496 GGCATGATT-TG-G-GT-GGATC
1 AGC-T-CTTACGAGCTTCTGTTT
18583515 AGCTCTTACGAGCTTCT-TTT
1 AGCTCTTACGAGCTTCTGTTT
**
18583535 CAGCTCTTACGAGCTTCCATTT
1 -AGCTCTTACGAGCTTCTGTTT
*
18583557 AGCTCTTATGAGCTTCTGTT
1 AGCTCTTACGAGCTTCTGTT
18583577 GGCATGTTCG
Statistics
Matches: 107, Mismatches: 27, Indels: 20
0.69 0.18 0.13
Matches are distributed among these distances:
17 2 0.02
18 3 0.03
19 5 0.05
20 7 0.07
21 70 0.65
22 20 0.19
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.42
Consensus pattern (21 bp):
AGCTCTTACGAGCTTCTGTTT
Found at i:18583571 original size:81 final size:80
Alignment explanation
Indices: 18583433--18583611 Score: 232
Period size: 81 Copynumber: 2.2 Consensus size: 80
18583423 GCTTCTGTGA
* ** **
18583433 AGCTCTTACGAGCTTCTTTTTTAACTCTTTTGAGCTTCTGTTTAGCTCTTATAAGCTTCTGTTGG
1 AGCTCTTACGAGCTTC-TTTTCAACTCTTACGAGCTTCCATTTAGCTCTTATAAGCTTCTGTTGG
* ** *
18583498 CATGATTTGGGTGGATC
65 CATG-TTCGGAAGGACC
* *
18583515 AGCTCTTACGAGCTTCTTTTCAGCTCTTACGAGCTTCCATTTAGCTCTTATGAGCTTCTGTTGGC
1 AGCTCTTACGAGCTTCTTTTCAACTCTTACGAGCTTCCATTTAGCTCTTATAAGCTTCTGTTGGC
18583580 ATGTTCGGAAGGACC
66 ATGTTCGGAAGGACC
*
18583595 AGCTCTTATGAGCTTCT
1 AGCTCTTACGAGCTTCT
18583612 ATTGACGATG
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 24 0.28
81 45 0.53
82 16 0.19
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.41
Consensus pattern (80 bp):
AGCTCTTACGAGCTTCTTTTCAACTCTTACGAGCTTCCATTTAGCTCTTATAAGCTTCTGTTGGC
ATGTTCGGAAGGACC
Found at i:18588675 original size:25 final size:24
Alignment explanation
Indices: 18588632--18588684 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
18588622 AAGTTCAAGC
*
18588632 GAGCCATATCAGGAAGCTCACAAA
1 GAGCCATATCAAGAAGCTCACAAA
* *
18588656 GAGCCTATATCAAGATGCTCATAAA
1 GAGCC-ATATCAAGAAGCTCACAAA
18588681 GAGC
1 GAGC
18588685 TGCGGTATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.17
Consensus pattern (24 bp):
GAGCCATATCAAGAAGCTCACAAA
Found at i:18595048 original size:25 final size:25
Alignment explanation
Indices: 18594970--18595064 Score: 88
Period size: 25 Copynumber: 3.9 Consensus size: 25
18594960 GAAGAGTTAT
* *
18594970 TATCAGGGAGCTC-CAAATAGCCATA
1 TATCAGGAAGCTCACAAAGAGCC-TA
* * **
18594995 TAACAGGAAGTTCA-AGCGAGCC-A
1 TATCAGGAAGCTCACAAAGAGCCTA
18595018 TATCAGGAAGCTCACAAAGAGCCTA
1 TATCAGGAAGCTCACAAAGAGCCTA
* *
18595043 TATCAGGACGCTCATAAAGAGC
1 TATCAGGAAGCTCACAAAGAGC
18595065 TACGGTATGT
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
23 13 0.24
24 6 0.11
25 36 0.65
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (25 bp):
TATCAGGAAGCTCACAAAGAGCCTA
Found at i:18595165 original size:64 final size:64
Alignment explanation
Indices: 18595041--18595166 Score: 144
Period size: 64 Copynumber: 2.0 Consensus size: 64
18595031 ACAAAGAGCC
* * * * ** * **
18595041 TATATCAGGACGCTCATAAAGAGCTACGGTATGTTCGTATTATATGCAGGATCCACACCGATTA
1 TATAACAGGACGCTCACAAAGAGCTACGGTATATTCGCAACACATGCAGGATAAACACCGATTA
* * *
18595105 TATAACAGGATGCTCACAAAGAGCTGCGGTATATTCGCAACACATGCAGGATAAATACCGAT
1 TATAACAGGACGCTCACAAAGAGCTACGGTATATTCGCAACACATGCAGGATAAACACCGAT
18595167 CAGGATGCTC
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
64 50 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (64 bp):
TATAACAGGACGCTCACAAAGAGCTACGGTATATTCGCAACACATGCAGGATAAACACCGATTA
Found at i:18612069 original size:81 final size:81
Alignment explanation
Indices: 18611947--18612096 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
18611937 TAGAGCACTC
* *
18611947 GCAAGGCATGGTATACTTCATCCATCGTTGAGACCTATAGCAAATCATAGTAATACAATGACCAA
1 GCAAGGCATGGTATACTTCATCCATCGTCGAGACCTATAGCAAATCATAGTAATACAACGACCAA
18612012 CCTCTACTAAGCATTT
66 CCTCTACTAAGCATTT
* * * * *
18612028 GCAAGGCATGGTATACTTCATTCTTCGTCGAGA-TTAGTAGCAGATCATAGTAATACAACGAGCA
1 GCAAGGCATGGTATACTTCATCCATCGTCGAGACCTA-TAGCAAATCATAGTAATACAACGACCA
18612092 ACCTC
65 ACCTC
18612097 CACCAAGACA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 2 0.03
81 59 0.97
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (81 bp):
GCAAGGCATGGTATACTTCATCCATCGTCGAGACCTATAGCAAATCATAGTAATACAACGACCAA
CCTCTACTAAGCATTT
Found at i:18614284 original size:13 final size:13
Alignment explanation
Indices: 18614266--18614292 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18614256 TTTGGTACAA
18614266 AAATGTGAGATAT
1 AAATGTGAGATAT
18614279 AAATGTGAGATAT
1 AAATGTGAGATAT
18614292 A
1 A
18614293 TGTGGTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.22, T:0.30
Consensus pattern (13 bp):
AAATGTGAGATAT
Found at i:18619017 original size:27 final size:27
Alignment explanation
Indices: 18618979--18619043 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
18618969 TTTATCGAGG
*
18618979 TTATTAGTTTATCGATAAATAAATATT
1 TTATTAATTTATCGATAAATAAATATT
*
18619006 TTATTAATTTATCGATAAATTAATATT
1 TTATTAATTTATCGATAAATAAATATT
18619033 TTATTAATTTA
1 TTATTAATTTA
18619044 GAGAATATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (27 bp):
TTATTAATTTATCGATAAATAAATATT
Found at i:18619186 original size:38 final size:33
Alignment explanation
Indices: 18619120--18619191 Score: 90
Period size: 33 Copynumber: 2.0 Consensus size: 33
18619110 TAGATCAAAG
*
18619120 TTAATTGGTTCATGTAACAAAAAAAAGAGTTAA
1 TTAATTGGTTCATGTAAAAAAAAAAAGAGTTAA
18619153 TTAATTGGTTCATGTAGCCAAAAAGAATAAAGAGTTAA
1 TTAATTGGTTCATGTA---AAAAA-AA-AAAGAGTTAA
18619191 T
1 T
18619192 GGTTTCAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
33 16 0.48
36 4 0.12
37 2 0.06
38 11 0.33
ACGTcount: A:0.46, C:0.07, G:0.17, T:0.31
Consensus pattern (33 bp):
TTAATTGGTTCATGTAAAAAAAAAAAGAGTTAA
Found at i:18626457 original size:22 final size:21
Alignment explanation
Indices: 18626430--18626483 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
18626420 TTTTACAAAA
18626430 TTTACAATTTTTTTATGATTTT
1 TTTACAATTTTTTTAT-ATTTT
18626452 TTTACAA-TTTTTTATATTTT
1 TTTACAATTTTTTTATATTTT
18626472 TTT-CTAATTTTT
1 TTTAC-AATTTTT
18626484 AATAAATTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.03
20 10 0.33
21 12 0.40
22 7 0.23
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTACAATTTTTTTATATTTT
Found at i:18626462 original size:20 final size:20
Alignment explanation
Indices: 18626438--18626483 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 20
18626428 AATTTACAAT
18626438 TTTTTTATGATTTTTTTAC-AA
1 TTTTTTAT-ATTTTTTT-CTAA
18626459 TTTTTTATATTTTTTTCTAA
1 TTTTTTATATTTTTTTCTAA
18626479 TTTTT
1 TTTTT
18626484 AATAAATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 15 0.62
21 8 0.33
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTTTTATATTTTTTTCTAA
Found at i:18626474 original size:10 final size:10
Alignment explanation
Indices: 18626436--18626474 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
18626426 AAAATTTACA
18626436 ATTTTTTTAT
1 ATTTTTTTAT
*
18626446 GATTTTTTTAC
1 -ATTTTTTTAT
*
18626457 AATTTTTTAT
1 ATTTTTTTAT
18626467 ATTTTTTT
1 ATTTTTTT
18626475 CTAATTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (10 bp):
ATTTTTTTAT
Found at i:18626481 original size:11 final size:11
Alignment explanation
Indices: 18626430--18626483 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
18626420 TTTTACAAAA
*
18626430 TTTACAATTTT
1 TTTATAATTTT
*
18626441 TTTATGATTTT
1 TTTATAATTTT
*
18626452 TTTACAA-TTT
1 TTTATAATTTT
18626462 TTTAT-ATTTT
1 TTTATAATTTT
*
18626472 TTTCTAATTTT
1 TTTATAATTTT
18626483 T
1 T
18626484 AATAAATTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
9 1 0.03
10 14 0.40
11 20 0.57
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.70
Consensus pattern (11 bp):
TTTATAATTTT
Found at i:18628814 original size:43 final size:43
Alignment explanation
Indices: 18628766--18629073 Score: 462
Period size: 43 Copynumber: 7.3 Consensus size: 43
18628756 TTATCTTTAA
*
18628766 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTATACAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
18628809 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
18628852 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
* *
18628895 AAACGCCGCTAAAGATCATGTTCTTTA---GCGCTTTTTGCAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
* * * * *
18628935 AAACGCCGCTAAAGCTCATGTTCTTTTGCGGTGCTTTTTACAT
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
* * *
18628978 AAACGCCGCTAAAGTTCATGTTCTTTAGCGGCGTTTTTTACAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
** *
18629021 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCAATTT-TTCAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
18629063 AAACGCCGCTA
1 AAACGCCGCTA
18629074 TTTGTTTGGT
Statistics
Matches: 245, Mismatches: 17, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
40 36 0.15
42 15 0.06
43 194 0.79
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
Found at i:18628997 original size:126 final size:125
Alignment explanation
Indices: 18628766--18629073 Score: 454
Period size: 126 Copynumber: 2.4 Consensus size: 125
18628756 TTATCTTTAA
* *
18628766 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTATACACAAACGCCGCTAAAGATCATGTT
1 AAACGCCGCTAAAGATCATGTTCTTTA---GCGCTTT-TTCACAAACGCCGCTAAAGATCATGTT
18628831 CTTTAGCGGCGCTTTATACACAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
62 CTTTAGCGGCGCTTTATACACAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
*
18628895 AAACGCCGCTAAAGATCATGTTCTTTAGCGCTTTTTGCACAAACGCCGCTAAAGCTCATGTTCTT
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGCTTTTT-CACAAACGCCGCTAAAGATCATGTTCTT
* * * * * * *
18628960 TTGCGGTGCTTTTTACATAAACGCCGCTAAAGTTCATGTTCTTTAGCGGCGTTTTTTACAC
65 TAGCGGCGCTTTATACACAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
18629021 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCAATTTTTCACAAACGCCGCTA
1 AAACGCCGCTAAAGATCATGTTCTTTAGC-GC--TTTTTCACAAACGCCGCTA
18629074 TTTGTTTGGT
Statistics
Matches: 165, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
125 1 0.01
126 117 0.71
127 2 0.01
128 14 0.08
129 31 0.19
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (125 bp):
AAACGCCGCTAAAGATCATGTTCTTTAGCGCTTTTTCACAAACGCCGCTAAAGATCATGTTCTTT
AGCGGCGCTTTATACACAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTATACAC
Found at i:18634836 original size:9 final size:9
Alignment explanation
Indices: 18634818--18634929 Score: 68
Period size: 9 Copynumber: 12.4 Consensus size: 9
18634808 TAAGGGATAT
*
18634818 TTATGAAAG
1 TTATGTAAG
18634827 TTATGTAAG
1 TTATGTAAG
18634836 TTATGT-A-
1 TTATGTAAG
* *
18634843 TTAAGTAGG
1 TTATGTAAG
18634852 TTATGTAAG
1 TTATGTAAG
18634861 TTATGTAAG
1 TTATGTAAG
* *
18634870 TTTTTGTGTA-
1 -TTATGT-AAG
*
18634880 TTATGTAAC
1 TTATGTAAG
* * *
18634889 TTTTTTAAT
1 TTATGTAAG
*
18634898 TTATGTAGG
1 TTATGTAAG
*
18634907 TTATGTATTG
1 TTATGTA-AG
*
18634917 TTATATAAG
1 TTATGTAAG
18634926 TTAT
1 TTAT
18634930 TATGTAGGTT
Statistics
Matches: 78, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
7 5 0.06
8 2 0.03
9 58 0.74
10 12 0.15
11 1 0.01
ACGTcount: A:0.29, C:0.01, G:0.19, T:0.51
Consensus pattern (9 bp):
TTATGTAAG
Found at i:18634940 original size:12 final size:12
Alignment explanation
Indices: 18634925--18634965 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
18634915 TGTTATATAA
18634925 GTTATTATGTAG
1 GTTATTATGTAG
*
18634937 GTTATTATGTAA
1 GTTATTATGTAG
* *
18634949 GTCATTATGTTG
1 GTTATTATGTAG
18634961 GTTAT
1 GTTAT
18634966 GTAAGTTGTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.24, C:0.02, G:0.22, T:0.51
Consensus pattern (12 bp):
GTTATTATGTAG
Found at i:18634949 original size:24 final size:24
Alignment explanation
Indices: 18634917--18634965 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
18634907 TTATGTATTG
*
18634917 TTATATAAGTTATTATGTAGGTTA
1 TTATATAAGTCATTATGTAGGTTA
* *
18634941 TTATGTAAGTCATTATGTTGGTTA
1 TTATATAAGTCATTATGTAGGTTA
18634965 T
1 T
18634966 GTAAGTTGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.29, C:0.02, G:0.18, T:0.51
Consensus pattern (24 bp):
TTATATAAGTCATTATGTAGGTTA
Found at i:18635080 original size:43 final size:41
Alignment explanation
Indices: 18635048--18635254 Score: 167
Period size: 43 Copynumber: 5.0 Consensus size: 41
18635038 GTGTATTATC
18635048 ACGTAAGTTATTATGTAGGATATTATGTAAGTTAGGTAAGTTT
1 ACGTAAGTTATTATGTAGGATATTATGTAAGTTAGGT-A-TTT
** *
18635091 TTGTAAGTTATTATGTAGGATATTAAGTAAGTTAGG-ATATT
1 ACGTAAGTTATTATGTAGGATATTATGTAAGTTAGGTAT-TT
* * * * * *
18635132 ATGTAGGATATATAATTTTA--AAATTATGT-TG-T--GTATTT
1 ACGTAAG-T-TATTA-TGTAGGATATTATGTAAGTTAGGTATTT
18635170 CACGTAAGTTATTATGTAGGATATTATGTAAGTTAGGTAAGTTT
1 -ACGTAAGTTATTATGTAGGATATTATGTAAGTTAGGT-A-TTT
** *
18635214 TTGTAAGTTATTATGTAGGATATTAAGTAAGTTAGGGTATT
1 ACGTAAGTTATTATGTAGGATATTATGTAAGTTA-GGTATT
18635255 ATGTAGGATA
Statistics
Matches: 130, Mismatches: 19, Indels: 31
0.72 0.11 0.17
Matches are distributed among these distances:
36 3 0.02
37 4 0.03
38 12 0.09
39 8 0.06
40 3 0.02
41 9 0.07
42 12 0.09
43 70 0.54
44 9 0.07
ACGTcount: A:0.33, C:0.01, G:0.22, T:0.44
Consensus pattern (41 bp):
ACGTAAGTTATTATGTAGGATATTATGTAAGTTAGGTATTT
Found at i:18635195 original size:123 final size:124
Alignment explanation
Indices: 18635035--18635281 Score: 478
Period size: 123 Copynumber: 2.0 Consensus size: 124
18635025 AGTTATATAA
18635035 GTTGTGTATTATCACGTAAGTTATTATGTAGGATATTATGTAAGTTAGGTAAGTTTTTGTAAGTT
1 GTTGTGTATTATCACGTAAGTTATTATGTAGGATATTATGTAAGTTAGGTAAGTTTTTGTAAGTT
18635100 ATTATGTAGGATATTAAGTAAGTTAGGATATTATGTAGGATATATAATTTTAAAATTAT
66 ATTATGTAGGATATTAAGTAAGTTAGGATATTATGTAGGATATATAATTTTAAAATTAT
18635159 GTTGTGTATT-TCACGTAAGTTATTATGTAGGATATTATGTAAGTTAGGTAAGTTTTTGTAAGTT
1 GTTGTGTATTATCACGTAAGTTATTATGTAGGATATTATGTAAGTTAGGTAAGTTTTTGTAAGTT
*
18635223 ATTATGTAGGATATTAAGTAAGTTAGGGTATTATGTAGGATATATAATTTTAAAATTAT
66 ATTATGTAGGATATTAAGTAAGTTAGGATATTATGTAGGATATATAATTTTAAAATTAT
18635282 ATGGATTAAA
Statistics
Matches: 122, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
123 112 0.92
124 10 0.08
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.45
Consensus pattern (124 bp):
GTTGTGTATTATCACGTAAGTTATTATGTAGGATATTATGTAAGTTAGGTAAGTTTTTGTAAGTT
ATTATGTAGGATATTAAGTAAGTTAGGATATTATGTAGGATATATAATTTTAAAATTAT
Found at i:18635324 original size:9 final size:9
Alignment explanation
Indices: 18635310--18635390 Score: 69
Period size: 9 Copynumber: 9.0 Consensus size: 9
18635300 TAAATATTAA
18635310 TAAGTTATG
1 TAAGTTATG
18635319 TAAGTTATG
1 TAAGTTATG
* *
18635328 TATTA-TAAATT
1 TA--AGT-TATG
*
18635339 TAAATTATG
1 TAAGTTATG
18635348 TAAGTTATG
1 TAAGTTATG
18635357 -AA-TTATG
1 TAAGTTATG
18635364 TAAGTTATG
1 TAAGTTATG
* *
18635373 TAAATTACG
1 TAAGTTATG
18635382 TAAGTTATG
1 TAAGTTATG
18635391 AAATTTGAAC
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
7 5 0.09
8 4 0.07
9 41 0.72
10 2 0.04
11 5 0.09
ACGTcount: A:0.38, C:0.01, G:0.16, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:18635362 original size:16 final size:16
Alignment explanation
Indices: 18635314--18635392 Score: 83
Period size: 16 Copynumber: 5.0 Consensus size: 16
18635304 TATTAATAAG
*
18635314 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGAA
* *
18635330 TTA--TAAATT-TAAA
1 TTATGTAAGTTATGAA
18635343 TTATGTAAGTTATGAA
1 TTATGTAAGTTATGAA
18635359 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATG--AA
*
18635377 TTACGTAAGTTATGAA
1 TTATGTAAGTTATGAA
18635393 ATTTGAACTT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
13 5 0.10
14 5 0.10
15 5 0.10
16 22 0.42
18 15 0.29
ACGTcount: A:0.39, C:0.01, G:0.15, T:0.44
Consensus pattern (16 bp):
TTATGTAAGTTATGAA
Found at i:18636930 original size:6 final size:6
Alignment explanation
Indices: 18636919--18636977 Score: 75
Period size: 6 Copynumber: 9.3 Consensus size: 6
18636909 ACACATGTTA
18636919 AATAAC AATAAC AAATAAC AAATAAC AATAAC AATAAC AATGAGA- AATAAC
1 AATAAC AATAAC -AATAAC -AATAAC AATAAC AATAAC AAT-A-AC AATAAC
18636970 AATAAC AA
1 AATAAC AA
18636978 ATAAACAGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
5 1 0.02
6 30 0.61
7 17 0.35
8 1 0.02
ACGTcount: A:0.68, C:0.14, G:0.03, T:0.15
Consensus pattern (6 bp):
AATAAC
Found at i:18636936 original size:13 final size:13
Alignment explanation
Indices: 18636919--18636981 Score: 85
Period size: 13 Copynumber: 4.9 Consensus size: 13
18636909 ACACATGTTA
18636919 AATAAC-AATAAC
1 AATAACAAATAAC
18636931 AAATAACAAATAAC
1 -AATAACAAATAAC
18636945 AATAAC-AATAAC
1 AATAACAAATAAC
* *
18636957 AATGAGAAATAAC
1 AATAACAAATAAC
18636970 AATAACAAATAA
1 AATAACAAATAA
18636982 ACAGTTCTAC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
12 10 0.23
13 28 0.64
14 6 0.14
ACGTcount: A:0.68, C:0.13, G:0.03, T:0.16
Consensus pattern (13 bp):
AATAACAAATAAC
Found at i:18638681 original size:6 final size:6
Alignment explanation
Indices: 18638672--18638696 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
18638662 TGTTTTCATT
18638672 TTAAAC TTAAAC TTAAAC TTAAAC T
1 TTAAAC TTAAAC TTAAAC TTAAAC T
18638697 AGATTCAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (6 bp):
TTAAAC
Found at i:18639725 original size:31 final size:32
Alignment explanation
Indices: 18639687--18639748 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
18639677 CCAAACCAAA
*
18639687 TATAATAAACCCTAAACCATAAACT-TAAAAT
1 TATAATAAACACTAAACCATAAACTATAAAAT
* *
18639718 TATAATAAACATTAAACCTTAAACTATAAAA
1 TATAATAAACACTAAACCATAAACTATAAAA
18639749 CCCTTAAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 22 0.81
32 5 0.19
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.27
Consensus pattern (32 bp):
TATAATAAACACTAAACCATAAACTATAAAAT
Found at i:18640221 original size:41 final size:41
Alignment explanation
Indices: 18640176--18640352 Score: 203
Period size: 41 Copynumber: 4.3 Consensus size: 41
18640166 TAAAAAAGCA
* * * * *
18640176 CCGCTAAAGGCCTGAGA-ATTAGCAGTGCATCCATAAAAACG
1 CCGCTAAAGCCCAGA-ACATTAGCGGCGCATACATAAAAACG
* * * *
18640217 CCGCTAAATCCCAGAATATTAGCGGCGCATAAATAAAAACA
1 CCGCTAAAGCCCAGAACATTAGCGGCGCATACATAAAAACG
*
18640258 CCGCTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACG
1 CCGCTAAAGCCCAGAACATTAGCGGCGCATACATAAAAACG
* * * * *
18640299 CCGCTAAAGCACAGAACATTAGCGGCACTTCCATAAAATCG
1 CCGCTAAAGCCCAGAACATTAGCGGCGCATACATAAAAACG
18640340 CCGCTAAAGCCCA
1 CCGCTAAAGCCCA
18640353 CGAAAAGTCA
Statistics
Matches: 117, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
40 1 0.01
41 116 0.99
ACGTcount: A:0.38, C:0.28, G:0.18, T:0.16
Consensus pattern (41 bp):
CCGCTAAAGCCCAGAACATTAGCGGCGCATACATAAAAACG
Found at i:18643026 original size:42 final size:42
Alignment explanation
Indices: 18642967--18643101 Score: 189
Period size: 42 Copynumber: 3.2 Consensus size: 42
18642957 CCACATAGCC
* *
18642967 AAGGACATGGGCGTGTGCCCAGGCCGTGTGAGTCACACGGGT
1 AAGGACATGGGTGTGTGCCCAGGCCGTGTGAGCCACACGGGT
* * *
18643009 AAGGACATGGGTGTGTGCCCAAGTCGTGTGAGCCTCACGGGT
1 AAGGACATGGGTGTGTGCCCAGGCCGTGTGAGCCACACGGGT
* * * *
18643051 AAGGACATGGATGTGTGCCCAGGCCATGTGAGCCACATGGGC
1 AAGGACATGGGTGTGTGCCCAGGCCGTGTGAGCCACACGGGT
18643093 AAGGACATG
1 AAGGACATG
18643102 TGCATGTGTT
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 81 1.00
ACGTcount: A:0.22, C:0.22, G:0.38, T:0.18
Consensus pattern (42 bp):
AAGGACATGGGTGTGTGCCCAGGCCGTGTGAGCCACACGGGT
Found at i:18645972 original size:30 final size:29
Alignment explanation
Indices: 18645933--18645993 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
18645923 ATTGAACTTT
18645933 AACTATT-AAATCAAAATAGTAGAGAGATTA
1 AACTATTAAAATCAAAA-A-TAGAGAGATTA
* * *
18645963 AACTCTTAAAATTAAAAATAGATAGATTA
1 AACTATTAAAATCAAAAATAGAGAGATTA
18645992 AA
1 AA
18645994 TTTTAAGTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 12 0.44
30 7 0.26
31 8 0.30
ACGTcount: A:0.56, C:0.07, G:0.10, T:0.28
Consensus pattern (29 bp):
AACTATTAAAATCAAAAATAGAGAGATTA
Found at i:18647311 original size:43 final size:43
Alignment explanation
Indices: 18647249--18647374 Score: 130
Period size: 43 Copynumber: 2.9 Consensus size: 43
18647239 ACATAGGTTG
*
18647249 TCGATATGTGTTTCCGTGTAAGACCACGTCTGGGACGTTGCCA
1 TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGCCA
* * * *
18647292 TCGATTTGTGTTTATGTGTAAGACC-CTGTCCGGGACAG-TGGCA
1 TCGATATGTGTTTACGTGTAAGACCAC-GTCTGGGAC-GTTGCCA
* * * * *
18647335 TTGATATGCGATTACATGTAAGACCACGTCTGGGCCGTTG
1 TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACGTTG
18647375 GCATTGTACG
Statistics
Matches: 66, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
42 2 0.03
43 62 0.94
44 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.31
Consensus pattern (43 bp):
TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGCCA
Found at i:18654077 original size:40 final size:40
Alignment explanation
Indices: 18654000--18654110 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 40
18653990 GGCGTTTGTA
* * *
18654000 CAAAAAATGCTGCTAAAAATCGAGCATTAGCGACGCTTTC
1 CAAAAAACGCCGCTAAAAATCGAGCATTAGCGACGCTTCC
*
18654040 CAAAAAACGCCGCTAAAGATCGAGCATTAGC-AGCGCTTCC
1 CAAAAAACGCCGCTAAAAATCGAGCATTAGCGA-CGCTTCC
* * * *
18654080 CTAGAAGCGCCGCTAAAAAT-GATCATTAGCG
1 CAAAAAACGCCGCTAAAAATCGAGCATTAGCG
18654111 GCGTTTTTTG
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
39 10 0.17
40 50 0.83
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.19
Consensus pattern (40 bp):
CAAAAAACGCCGCTAAAAATCGAGCATTAGCGACGCTTCC
Found at i:18654238 original size:41 final size:40
Alignment explanation
Indices: 18654176--18654494 Score: 341
Period size: 41 Copynumber: 7.8 Consensus size: 40
18654166 CCTTTAGGGT
* * * * *
18654176 TTTTAGCAGCGTTTTTGAAAAAGCACCGCTAAAGATCGGGA
1 TTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC-AGA
* * * * * *
18654217 TTTTAGCGGCATTTTTTAAAAAGCGCAGCTAATGCCCTGG
1 TTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
* *
18654257 TCTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGCTCAGA
1 T-TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
* * * *
18654298 GATTTAGCGGCGTTTTTGAAAAATCACCGCTAATGTTCAGA
1 -TTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
* * * * * *
18654339 GCTTTAGCAGCATTTTTGGAGAAGCGACGCTAATGCTCAGA
1 -TTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
* *
18654380 TCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAGTGCTCAGA
1 T-TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
*
18654421 TCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGAGC
1 T-TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC-AGA
18654463 TTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
1 TTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
18654495 AATATTTTAT
Statistics
Matches: 232, Mismatches: 42, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
40 2 0.01
41 227 0.98
42 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
Found at i:18654396 original size:123 final size:121
Alignment explanation
Indices: 18654177--18654494 Score: 402
Period size: 123 Copynumber: 2.6 Consensus size: 121
18654167 CTTTAGGGTT
* * * * *
18654177 TTTAGCAGCGTTTTTGAAAAAGCACCGCTAAAGATCGGGATTTTAGCGGCATTTTTTAAAAAGCG
1 TTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGATCGAG-CTTTAGCGGCATTTTTGAAAAAGCG
* * *
18654242 CAGCTAATGCCCTGGTCTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGCTCAGAGA
65 C-GCTAATGCCCAGATCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGA
* * * * *
18654300 TTTAGCGGCGTTTTTGAAAAATCACCGCTAATGTTCAGAGCTTTAGCAGCATTTTTGGAGAAGCG
1 TTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGATC-GAGCTTTAGCGGCATTTTTGAAAAAGCG
* * **
18654365 ACGCTAATGCTCAGATCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAGTGCTCAGATC
65 -CGCTAATGCCCAGATCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGA
* * *
18654423 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGAGCTTTTAGCGGCGTTTTTGAAAAAGCG
1 TTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGATCGAGC-TTTAGCGGCATTTTTGAAAAAGCG
18654488 CCGCTAA
65 -CGCTAA
18654495 AATATTTTAT
Statistics
Matches: 167, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
122 4 0.02
123 160 0.96
124 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (121 bp):
TTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGATCGAGCTTTAGCGGCATTTTTGAAAAAGCGC
GCTAATGCCCAGATCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGA
Found at i:18654803 original size:29 final size:29
Alignment explanation
Indices: 18654748--18654803 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
18654738 AATTTAGGGG
*
18654748 TTAGGGGTTAGAGATTAAGAGTTAGGGAT
1 TTAGGGGTTAGAGATTAAGAGTCAGGGAT
* * * *
18654777 TTAGGGTTTATAGATTCAGTGTCAGGG
1 TTAGGGGTTAGAGATTAAGAGTCAGGG
18654804 TAGGCTTTAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.27, C:0.04, G:0.36, T:0.34
Consensus pattern (29 bp):
TTAGGGGTTAGAGATTAAGAGTCAGGGAT
Found at i:18654894 original size:81 final size:82
Alignment explanation
Indices: 18654804--18654958 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 82
18654794 AGTGTCAGGG
* * *
18654804 TAGGCTTTAGGGTTTAGATTAATCAGTGTGTTTTAA-TT-TATATTAAATAAGATTTAGGGGTTA
1 TAGGATTTAGGGTTTAGATTAATCAATAT-TTTTAATTTGTATATTAAATAAGATTTAGGGGTTA
18654867 G-AGGTTAGGGATTTGGGT
65 GTA-GTTAGGGATTTGGGT
* * *
18654885 TAGGATTTAGGGTTTTGATTAATTAATATTTTTAATTTGTATATTAAATAAGGTTTAGGGGTTAG
1 TAGGATTTAGGGTTTAGATTAATCAATATTTTTAATTTGTATATTAAATAAGATTTAGGGGTTAG
18654950 TAGTTAGGG
66 TAGTTAGGG
18654959 TTAGGGGTTA
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
80 6 0.09
81 26 0.40
82 32 0.49
83 1 0.02
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (82 bp):
TAGGATTTAGGGTTTAGATTAATCAATATTTTTAATTTGTATATTAAATAAGATTTAGGGGTTAG
TAGTTAGGGATTTGGGT
Found at i:18655116 original size:21 final size:21
Alignment explanation
Indices: 18655092--18655134 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
18655082 AAAAGAGGGG
18655092 TTAGGGGTTAAAGGTTAAGGA
1 TTAGGGGTTAAAGGTTAAGGA
* *
18655113 TTAGGGGTTAAGGGTTATGGA
1 TTAGGGGTTAAAGGTTAAGGA
18655134 T
1 T
18655135 AGGTAACTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.40, T:0.33
Consensus pattern (21 bp):
TTAGGGGTTAAAGGTTAAGGA
Found at i:18660060 original size:42 final size:44
Alignment explanation
Indices: 18659999--18660258 Score: 184
Period size: 43 Copynumber: 6.1 Consensus size: 44
18659989 GATATGTTTT
* *
18659999 TAGCAGCGTTTGTGTG-AAAAGCGTCACTAAAGGT-TTGT-TCTA
1 TAGCAGCGTTTGTGGGAAAAAGCGCCACTAAAGGTCTT-TATCTA
*
18660041 TAGCAGCGTTTGTGGGAAAAAGCGCCGCTAAAGGTCTTTATCTA
1 TAGCAGCGTTTGTGGGAAAAAGCGCCACTAAAGGTCTTTATCTA
* * * * * *
18660085 TAGCAGCGTTTGT-GGAACAAGCACCGCTAAAAGTCCTGATCTA
1 TAGCAGCGTTTGTGGGAAAAAGCGCCACTAAAGGTCTTTATCTA
* * ** * * *
18660128 TAACGGCGTTTTGTGTGG---TTGCGCCGCTAAAGGTCCTAATCTA
1 TAGCAGCG-TTTGTG-GGAAAAAGCGCCACTAAAGGTCTTTATCTA
* * * *
18660171 TAGC-GACGTTTGT--GAAAAAGTGCCGCTAAAGGTCCTGATCTA
1 TAGCAG-CGTTTGTGGGAAAAAGCGCCACTAAAGGTCTTTATCTA
* * * *
18660213 TAGCGGCGTTTGTGGG-AAAA-CACCGCTAAAGGTCTTGATCTA
1 TAGCAGCGTTTGTGGGAAAAAGCGCCACTAAAGGTCTTTATCTA
18660255 TAGC
1 TAGC
18660259 GGCATTTATT
Statistics
Matches: 182, Mismatches: 23, Indels: 26
0.79 0.10 0.11
Matches are distributed among these distances:
39 1 0.01
42 76 0.42
43 78 0.43
44 25 0.14
46 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (44 bp):
TAGCAGCGTTTGTGGGAAAAAGCGCCACTAAAGGTCTTTATCTA
Found at i:18660152 original size:86 final size:84
Alignment explanation
Indices: 18660037--18660259 Score: 252
Period size: 85 Copynumber: 2.6 Consensus size: 84
18660027 AAAGGTTTGT
* * *
18660037 TCTATAGCAGCGTTTGTGGGAAAAAGCGCCGCTAAAGGTCTTTATCTATAGC-AGCGTTTGTGGA
1 TCTATAACGGCGTTTGTGGG--AAAGCGCCGCTAAAGGTCTTAATCTATAGCGA-CGTTTGT-GA
*
18660101 ACAAGCACCGCTAAAAGTCCTGA
62 AAAAGCACCGCTAAAAGTCCTGA
** *
18660124 TCTATAACGGCGTTTTGTGTGG-TTGCGCCGCTAAAGGTCCTAATCTATAGCGACGTTTGTGAAA
1 TCTATAACGGCG-TTTGTG-GGAAAGCGCCGCTAAAGGTCTTAATCTATAGCGACGTTTGTGAAA
** *
18660188 AAGTGCCGCTAAAGGTCCTGA
64 AAGCACCGCTAAAAGTCCTGA
* * * *
18660209 TCTATAGCGGCGTTTGTGGGAAAACACCGCTAAAGGTCTTGATCTATAGCG
1 TCTATAACGGCGTTTGTGGGAAAGCGCCGCTAAAGGTCTTAATCTATAGCG
18660260 GCATTTATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
83 2 0.02
84 30 0.26
85 32 0.28
86 32 0.28
87 11 0.10
88 6 0.05
89 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (84 bp):
TCTATAACGGCGTTTGTGGGAAAGCGCCGCTAAAGGTCTTAATCTATAGCGACGTTTGTGAAAAA
GCACCGCTAAAAGTCCTGA
Found at i:18660259 original size:42 final size:43
Alignment explanation
Indices: 18659999--18660261 Score: 259
Period size: 42 Copynumber: 6.2 Consensus size: 43
18659989 GATATGTTTT
* * * * * *
18659999 TAGCAGCGTTTGTGTGAAAAGCGTCACTAAAGGT-TTGTTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* * *
18660041 TAGCAGCGTTTGTGGGAAAAAGCGCCGCTAAAGGTCTTTATCTA
1 TAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGGTCCTGATCTA
* * *
18660085 TAGCAGCGTTTGT-GGAACAAGCACCGCTAAAAGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAA-AAGCGCCGCTAAAGGTCCTGATCTA
* ** *
18660128 TAACGGCGTTTTGTGTGG--TTGCGCCGCTAAAGGTCCTAATCTA
1 TAGCGGCG-TTTGTG-GGAAAAGCGCCGCTAAAGGTCCTGATCTA
* * *
18660171 TAGCGACGTTTGT-GAAAAAGTGCCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* *
18660213 TAGCGGCGTTTGTGGGAAAA-CACCGCTAAAGGTCTTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
18660255 TAGCGGC
1 TAGCGGC
18660262 ATTTATTTCA
Statistics
Matches: 184, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
40 1 0.01
42 81 0.44
43 76 0.41
44 24 0.13
46 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
Found at i:18662442 original size:19 final size:17
Alignment explanation
Indices: 18662416--18662455 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
18662406 AAGAAAACAT
18662416 TTTGAAATTGAATAATGA
1 TTTGAAA-TGAATAATGA
*
18662434 TTTGTAAATGAATAATGT
1 TTTG-AAATGAATAATGA
18662452 TTTG
1 TTTG
18662456 GAAACGAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (17 bp):
TTTGAAATGAATAATGA
Found at i:18663501 original size:114 final size:113
Alignment explanation
Indices: 18663309--18663513 Score: 265
Period size: 114 Copynumber: 1.8 Consensus size: 113
18663299 TTTTTGAGCT
*
18663309 TTCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGTTCAGGCCTTTAGCGGCATTTTTG
1 TTCGGGGATTTAGCGGCGTTTTTAAGTAAGCGCCGCTAATGTTCAGGCCTTTAGCGGCATTTTTG
*
18663374 AGAAAGTGCCGCAACAAAAACTAAGCCGAACTACACTGTTTTCTGACAA
66 AGAAAGCGCCGCAA-AAAAACTAAGCCGAACTACACTGTTTTCTGACAA
* * *
18663423 TTCGTGGGCTTTAGCGGCG-TTTTAAG-AATGCGCCGCTAATGCTT-AGGGCTTTAGCGGCGTTT
1 TTCG-GGGATTTAGCGGCGTTTTTAAGTAA-GCGCCGCTAATG-TTCAGGCCTTTAGCGGCATTT
* * *
18663485 TTGTTG-AAGCGTCGCAAAAAACCTAAGCC
63 TTG-AGAAAGCGCCGCAAAAAAACTAAGCC
18663514 CAACGGCGTC
Statistics
Matches: 79, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
113 13 0.16
114 51 0.65
115 15 0.19
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (113 bp):
TTCGGGGATTTAGCGGCGTTTTTAAGTAAGCGCCGCTAATGTTCAGGCCTTTAGCGGCATTTTTG
AGAAAGCGCCGCAAAAAAACTAAGCCGAACTACACTGTTTTCTGACAA
Found at i:18664319 original size:7 final size:7
Alignment explanation
Indices: 18664305--18664339 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
18664295 GGAATATTAC
18664305 GGTTTGG
1 GGTTTGG
*
18664312 GATTTGG
1 GGTTTGG
*
18664319 GGTTTAG
1 GGTTTGG
18664326 GGTTTGG
1 GGTTTGG
18664333 GGTTTGG
1 GGTTTGG
18664340 TTTTTGAGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.06, C:0.00, G:0.51, T:0.43
Consensus pattern (7 bp):
GGTTTGG
Found at i:18665538 original size:147 final size:143
Alignment explanation
Indices: 18665261--18665730 Score: 372
Period size: 147 Copynumber: 3.2 Consensus size: 143
18665251 TACGTTGCTA
* *** * *
18665261 TTAGTGGCGCTTTACATC-AAACGCCGCAAAATTGTAATTTTGTTTA-ATGAAATGTTGTCGTTT
1 TTAGTGGCGCTTTAC-TCAAAACGCCGCAAAATTGTTATAACGTTTATA-GAAACG-TGCCGTTT
* * * * * * **
18665324 TGTCTATGGTATTAGTGGCGTTTTTATGAAAAGGCCACAAGCTTGAGTTAACTGTTGGGGAAACG
63 TG--TATGTTATTAGTGGCGTTTTT-CGAAAACGCCACAGGTTTGAGCTAACTGTTGATGAAACG
18665389 ACTTCG-TTTGAGCTTATAG
125 ACTTCGTTTTGA-CTTATAG
* *
18665408 TTAGTGGCGCTTTACTCAAAACACCGCAAAATTGTTCTAACGTTTATAGAAACGCTGCCGTTTTG
1 TTAGTGGCGCTTTACTCAAAACGCCGCAAAATTGTTATAACGTTTATAGAAACG-TGCCGTTTTG
* * * *
18665473 TAAATGTTATTAGTGGCGTTTTTGCGAAAACGCCACGGGTTTGAGGTAAGTGTTGATGAAGCGAC
65 T--ATGTTATTAGTGGCGTTTTT-CGAAAACGCCACAGGTTTGAGCTAACTGTTGATGAAACGAC
* *
18665538 TGCGTTTTGATTTATAG
127 TTCGTTTTGACTTATAG
* * *** * * * * * * *
18665555 TTTGTGGAGCTTCGGTTAAAACGCCGCAAAAATGTTTTAACATTTATTGATACGAGTCCGTTTTG
1 TTAGTGGCGCTTTACTCAAAACGCCGCAAAATTGTTATAACGTTTATAGAAACGTG-CCGTTTTG
* * * * * ** *
18665620 CTGTATTATTAGTGGCGTTTATTCAAAAACTCCACAGGTGTGAGCTATTTGTTGATGAAACGGCT
65 -TATGTTATTAGTGGCGTTT-TTCGAAAACGCCACAGGTTTGAGCTAACTGTTGATGAAACGACT
*
18665685 TCGTTTTGACTTTTAG
128 TCGTTTTGACTTATAG
* *
18665701 TTAGTGGCGC-TTATTTATAAACGCCGCAAA
1 TTAGTGGCGCTTTACTCA-AAACGCCGCAAA
18665731 TGGATAATTT
Statistics
Matches: 259, Mismatches: 55, Indels: 19
0.78 0.17 0.06
Matches are distributed among these distances:
145 5 0.02
146 85 0.33
147 162 0.63
148 7 0.03
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (143 bp):
TTAGTGGCGCTTTACTCAAAACGCCGCAAAATTGTTATAACGTTTATAGAAACGTGCCGTTTTGT
ATGTTATTAGTGGCGTTTTTCGAAAACGCCACAGGTTTGAGCTAACTGTTGATGAAACGACTTCG
TTTTGACTTATAG
Found at i:18667601 original size:13 final size:13
Alignment explanation
Indices: 18667583--18667624 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
18667573 NNNNNNNNNN
*
18667583 TTAAATTTATTAC
1 TTAAATATATTAC
*
18667596 TTAAATATGTTAC
1 TTAAATATATTAC
*
18667609 TTAAATACATTAC
1 TTAAATATATTAC
18667622 TTA
1 TTA
18667625 CTAAAATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (13 bp):
TTAAATATATTAC
Found at i:18667937 original size:28 final size:28
Alignment explanation
Indices: 18667901--18668045 Score: 123
Period size: 28 Copynumber: 5.0 Consensus size: 28
18667891 AAAAATTTTT
*
18667901 ATATAAACTTACATAATACATTACTTAC
1 ATATAAACTTACATAATACATAACTTAC
* * **
18667929 ATATTAACTTACATAACTTA-TTAA-TATTT
1 ATATAAACTTACATAA--TACATAACT-TAC
*
18667958 ATATAAACTTACATAACTATCACATAAACTTAT
1 ATATAAACTTACAT-A--AT-ACAT-AACTTAC
*
18667991 ATGTAAACTTACATAATACATAACTTAC
1 ATATAAACTTACATAATACATAACTTAC
* *
18668019 ATGTTAACTTACATAATACATAACTTA
1 ATATAAACTTACATAATACATAACTTA
18668046 TAAAAAATTT
Statistics
Matches: 96, Mismatches: 11, Indels: 20
0.76 0.09 0.16
Matches are distributed among these distances:
28 48 0.50
29 20 0.21
30 6 0.06
31 1 0.01
32 3 0.03
33 17 0.18
34 1 0.01
ACGTcount: A:0.46, C:0.16, G:0.01, T:0.37
Consensus pattern (28 bp):
ATATAAACTTACATAATACATAACTTAC
Found at i:18667942 original size:90 final size:89
Alignment explanation
Indices: 18667848--18668034 Score: 220
Period size: 90 Copynumber: 2.1 Consensus size: 89
18667838 ACTTACATAA
* *
18667848 TACATAACTTATATGTAA-ACTTACATATAA-TACATAACTTAT-A-AAAAATTTTTATATAAAC
1 TACATAAC-T-TAT-TAATACTTACATA-AACTACATAAC-TATCACAAAAACTTATATATAAAC
*
18667909 TTACATAATACATTACTTACATATTAACT
61 TTACATAATACATAACTTACATATTAACT
* * * *
18667938 TACATAACTTATTAATATTTATATAAACTTACATAACTATCACATAAACTTATATGTAAACTTAC
1 TACATAACTTATTAATACTTACATAAAC-TACATAACTATCACAAAAACTTATATATAAACTTAC
*
18668003 ATAATACATAACTTACATGTTAACT
65 ATAATACATAACTTACATATTAACT
18668028 TACATAA
1 TACATAA
18668035 TACATAACTT
Statistics
Matches: 84, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
87 5 0.06
88 13 0.15
89 10 0.12
90 56 0.67
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (89 bp):
TACATAACTTATTAATACTTACATAAACTACATAACTATCACAAAAACTTATATATAAACTTACA
TAATACATAACTTACATATTAACT
Found at i:18668017 original size:16 final size:16
Alignment explanation
Indices: 18667996--18668045 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
18667986 CTTATATGTA
18667996 AACTTACATAATACAT
1 AACTTACATAATACAT
*
18668012 AACTTACAT-GT---T
1 AACTTACATAATACAT
18668024 AACTTACATAATACAT
1 AACTTACATAATACAT
18668040 AACTTA
1 AACTTA
18668046 TAAAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 10 0.36
13 1 0.04
15 1 0.04
16 16 0.57
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.34
Consensus pattern (16 bp):
AACTTACATAATACAT
Done.