Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 57 of 79
Found at i:19013916 original size:21 final size:20
Alignment explanation
Indices: 19013883--19013931 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
19013873 AAAAAAAAAG
*
19013883 AAAAAAAGAAATAGAATACAA
1 AAAAAAACAAATA-AATACAA
* **
19013904 AAAAAAACCAATAAATTTAA
1 AAAAAAACAAATAAATACAA
19013924 AAAAAAAC
1 AAAAAAAC
19013932 GAAGGTAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.76, C:0.08, G:0.04, T:0.12
Consensus pattern (20 bp):
AAAAAAACAAATAAATACAA
Found at i:19024077 original size:32 final size:30
Alignment explanation
Indices: 19024013--19024078 Score: 78
Period size: 32 Copynumber: 2.1 Consensus size: 30
19024003 TAAATTTCAA
* *
19024013 AAAATTTTAAAAATATGAAACTATTTTTTT
1 AAAATTTTAAAAATATGAAACAATATTTTT
* *
19024043 AAAATTATTAAAAATCATTAAAGAATATTTTT
1 AAAATT-TTAAAAAT-ATGAAACAATATTTTT
19024075 AAAA
1 AAAA
19024079 AAATTTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 6 0.20
31 8 0.27
32 16 0.53
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (30 bp):
AAAATTTTAAAAATATGAAACAATATTTTT
Found at i:19024942 original size:16 final size:16
Alignment explanation
Indices: 19024923--19024958 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
19024913 TCTCTTTGTT
*
19024923 TTTTTTATATTTTTTC
1 TTTTTTATATTTCTTC
*
19024939 TTTTTTTTATTTCTTC
1 TTTTTTATATTTCTTC
19024955 TTTT
1 TTTT
19024959 ATAATATCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTTTATATTTCTTC
Found at i:19025267 original size:23 final size:22
Alignment explanation
Indices: 19025222--19025267 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
19025212 CGGTGTTTTG
* *
19025222 TATTTTTAAAATTTTTATGTTT
1 TATTTTTAAAATTTTAATATTT
*
19025244 TATTTTTATGAATTTTAATATTT
1 TATTTTTA-AAATTTTAATATTT
19025267 T
1 T
19025268 TTTAGATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.67
Consensus pattern (22 bp):
TATTTTTAAAATTTTAATATTT
Found at i:19028329 original size:6 final size:6
Alignment explanation
Indices: 19028318--19028352 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
19028308 NNNNNNNNNN
* *
19028318 AATATT AATATT AATATC AATATC AATATT AATAT
1 AATATT AATATT AATATT AATATT AATATT AATAT
19028353 AATCACTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (6 bp):
AATATT
Found at i:19028345 original size:18 final size:18
Alignment explanation
Indices: 19028318--19028352 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
19028308 NNNNNNNNNN
*
19028318 AATATTAATATTAATATC
1 AATATCAATATTAATATC
19028336 AATATCAATATTAATAT
1 AATATCAATATTAATAT
19028353 AATCACTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (18 bp):
AATATCAATATTAATATC
Found at i:19028919 original size:13 final size:13
Alignment explanation
Indices: 19028901--19028925 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19028891 TAATTTTCAA
19028901 GAAAATTCTTTAC
1 GAAAATTCTTTAC
19028914 GAAAATTCTTTA
1 GAAAATTCTTTA
19028926 ATCAAATTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (13 bp):
GAAAATTCTTTAC
Found at i:19032432 original size:9 final size:9
Alignment explanation
Indices: 19032418--19032454 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
19032408 TATAGTTTGA
19032418 TATTCGAAT
1 TATTCGAAT
19032427 TATTCGAAT
1 TATTCGAAT
*
19032436 TATTCGAGT
1 TATTCGAAT
19032445 TATTCGAAT
1 TATTCGAAT
19032454 T
1 T
19032455 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:19032525 original size:9 final size:9
Alignment explanation
Indices: 19032508--19032538 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
19032498 TCGAGTTGAT
19032508 TCGAATAAC
1 TCGAATAAC
*
19032517 TCGATTAAC
1 TCGAATAAC
19032526 TCGAATAAC
1 TCGAATAAC
19032535 TCGA
1 TCGA
19032539 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:19037773 original size:25 final size:24
Alignment explanation
Indices: 19037720--19037767 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
19037710 TAATATATAA
*
19037720 CATTTGAAAAATTCTTATTTGAAG
1 CATTTGAAAAAGTCTTATTTGAAG
*
19037744 AATTTGAAAAAGGTCGTTATTTGA
1 CATTTGAAAAA-GTC-TTATTTGA
19037768 TCATTTTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 10 0.50
25 2 0.10
26 8 0.40
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.40
Consensus pattern (24 bp):
CATTTGAAAAAGTCTTATTTGAAG
Found at i:19043358 original size:14 final size:14
Alignment explanation
Indices: 19043339--19043369 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
19043329 CAAGGTTCGA
19043339 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
*
19043353 GTTTAGGGTTTGAG
1 GTTTAGGGTTTAAG
19043367 GTT
1 GTT
19043370 CAAATTTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:19043369 original size:34 final size:34
Alignment explanation
Indices: 19043331--19043403 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
19043321 CTTAGGTTCA
* * * *
19043331 AGGTTCGAGTTTAGGGTTTAAGGTTTAGGGTTTG
1 AGGTTCAAATTTAAGGTTCAAGGTTTAGGGTTTG
*
19043365 AGGTTCAAATTTAAGGTTCAAGGTTTGGGGTTTG
1 AGGTTCAAATTTAAGGTTCAAGGTTTAGGGTTTG
*
19043399 GGGTT
1 AGGTT
19043404 TGGGGTTCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.19, C:0.04, G:0.37, T:0.40
Consensus pattern (34 bp):
AGGTTCAAATTTAAGGTTCAAGGTTTAGGGTTTG
Found at i:19043396 original size:7 final size:7
Alignment explanation
Indices: 19043386--19043410 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
19043376 TAAGGTTCAA
19043386 GGTTTGG
1 GGTTTGG
19043393 GGTTTGG
1 GGTTTGG
19043400 GGTTTGG
1 GGTTTGG
19043407 GGTT
1 GGTT
19043411 CAAGGTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.56, T:0.44
Consensus pattern (7 bp):
GGTTTGG
Found at i:19045334 original size:159 final size:160
Alignment explanation
Indices: 19045033--19045354 Score: 637
Period size: 159 Copynumber: 2.0 Consensus size: 160
19045023 TTTTATATTT
19045033 TTTTTAATAAGTGATGAGATTTGAGTTACACAATTCTAACAAATCTAAACTTGAATTGGAAATTG
1 TTTTTAATAAGTGATGAGATTTGAGTTACACAATTCTAACAAATCTAAACTTGAATTGGAAATTG
19045098 ATTAACAAATGGAGAAAGTGAAATCCTAGGATGGAAATAAGTTGAATAGTGTTAGAGTCTAATTG
66 ATTAACAAATGGAGAAAGTGAAATCCTAGGATGGAAATAAGTTGAATAGTGTTAGAGTCTAATTG
19045163 AATTGCAAGTATGTTTGTTTTAAGATTAAG
131 AATTGCAAGTATGTTTGTTTTAAGATTAAG
19045193 TTTTTAATAAG-GATGAGATTTGAGTTACACAATTCTAACAAATCTAAACTTGAATTGGAAATTG
1 TTTTTAATAAGTGATGAGATTTGAGTTACACAATTCTAACAAATCTAAACTTGAATTGGAAATTG
19045257 ATTAACAAATGGAGAAAGTGAAATCCTAGGATGGAAATAAGTTGAATAGTGTTAGAGTCTAATTG
66 ATTAACAAATGGAGAAAGTGAAATCCTAGGATGGAAATAAGTTGAATAGTGTTAGAGTCTAATTG
19045322 AATTGCAAGTATGTTTGTTTTAAGATTAAG
131 AATTGCAAGTATGTTTGTTTTAAGATTAAG
19045352 TTT
1 TTT
19045355 AAAAGAACTT
Statistics
Matches: 162, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
159 151 0.93
160 11 0.07
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.35
Consensus pattern (160 bp):
TTTTTAATAAGTGATGAGATTTGAGTTACACAATTCTAACAAATCTAAACTTGAATTGGAAATTG
ATTAACAAATGGAGAAAGTGAAATCCTAGGATGGAAATAAGTTGAATAGTGTTAGAGTCTAATTG
AATTGCAAGTATGTTTGTTTTAAGATTAAG
Found at i:19048280 original size:44 final size:44
Alignment explanation
Indices: 19048215--19048432 Score: 121
Period size: 44 Copynumber: 5.0 Consensus size: 44
19048205 CTGTATCTTC
19048215 AGGGAGATAAGA-CTTGT-ATCTTCGATCTACTCCACTACTGCCT
1 AGGGAGATAAGATC-TGTAATCTTCGATCTACTCCACTACTGCCT
* * *
19048258 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTATTGTCC-
1 AGGGAGATAAGATCTGTAATCTTCGATCTACTCCACTACTG-CCT
* * * * * * *
19048302 ATGGAGAT-AGA-AT-TATTGACTTCAATGTACTCCACT-GTAACCT
1 AGGGAGATAAGATCTGTAAT--CTTCGATCTACTCCACTACT-GCCT
* * * * * * * *
19048345 CAGTGAGGTAAAATCCGTCATCCTT-GATCTGCTCAACTACTGCTT
1 -AGGGAGATAAGATCTGTAAT-CTTCGATCTACTCCACTACTGCCT
* *
19048390 AGGGAGATAAGATCTGTAATCTTTGATCTA-TCCCACTGCTGCC
1 AGGGAGATAAGATCTGTAATCTTCGATCTACT-CCACTACTGCC
19048433 CATGGGGATA
Statistics
Matches: 126, Mismatches: 35, Indels: 27
0.67 0.19 0.14
Matches are distributed among these distances:
41 3 0.02
42 4 0.03
43 37 0.29
44 61 0.48
45 15 0.12
46 4 0.03
47 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (44 bp):
AGGGAGATAAGATCTGTAATCTTCGATCTACTCCACTACTGCCT
Found at i:19048578 original size:45 final size:42
Alignment explanation
Indices: 19048519--19049732 Score: 626
Period size: 44 Copynumber: 27.4 Consensus size: 42
19048509 TCCAATACAT
* *
19048519 GAAGACAAGGTCTGTTCTTTTCGATCTACTCCACCATCAGTATGG
1 GAAGACAAGATCTGTT-TTTT-GATCTACTTCACCA-CAGTATGG
* ***
19048564 GGAGACAAGATCTGTTGTCTTTGATCTA-TT-A-CAC-GCTAAAT
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCACCACAG-TATGG
* **
19048605 GAAGACAAGATCTATTTTTTCGATCTGTTTCACCACCAGTATGG
1 GAAGACAAGATCTGTTTTTT-GATCTACTTCACCA-CAGTATGG
* * * * ***
19048649 GAAGACAATATCTATTATCTTTGATCTACTCCACGC-TAGTACAC
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCAC-CACAGTATGG
*
19048693 GAAGACAAGATCTGCTTTCTTTGATCTGCTTCACCACTAGTATGG
1 GAAGACAAGATCTG-TTT-TTTGATCTACTTCACCAC-AGTATGG
* ***
19048738 GAAGGCAAGATCTGTTATCTTTGATCTACTTCACGC-CAGTACAT
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCAC-CACAGTATGG
*
19048782 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTG-TTT-TTTGATCTACTTCACCA-CAGTATGG
* ***
19048827 GAAGACAAGATCTCGTATCTTTGATCTACTTCACGC-CAGTACAT
1 GAAGACAAGATCT-GT-TTTTTGATCTACTTCAC-CACAGTATGG
**
19048871 GAAGACAAGATCTGTTTTCTTCGATCTACTTTGCCACCAGTATGG
1 GAAGACAAGATCTGTTTT-TT-GATCTACTTCACCA-CAGTATGG
* * ***
19048916 GAATACAAGATCTGGTATCTTTGATCTACTTCACGC-CAGTACAT
1 GAAGACAAGATCT-GT-TTTTTGATCTACTTCAC-CACAGTATGG
* * * * *
19048960 GAAGACAATATCTGCTTTCTTAGATCTGCTTCGCCGCCAGTATGG
1 GAAGACAAGATCTG-TTT-TTTGATCTACTTCACC-ACAGTATGG
* ** * ***
19049005 AAAGGTAAGATTTGTTATCTTTGATCTACTTCACGC-CAGTACAT
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCAC-CACAGTATGG
*
19049049 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGTTTT-TT-GATCTACTTCACCA-CAGTATGG
* * * ***
19049094 GAAGACAAGATCTGGTATCTTTGATGTACTTCACGC-CAGAACAT
1 GAAGACAAGATCT-GT-TTTTTGATCTACTTCAC-CACAGTATGG
19049138 GAAGACAAGATCTGTTTTCTTTGATCTACTTCAGCGC-CAGTATGG
1 GAAGACAAGATCTG-TTT-TTTGATCTACTTCA-C-CACAGTATGG
* ***
19049183 GAAGACAAGATCTGGTATCTTTGATCTACTTCACGC-CAGTACAT
1 GAAGACAAGATCT-GT-TTTTTGATCTACTTCAC-CACAGTATGG
* * * * *
19049227 GAAGACAAGATCTGCTTTATTCGATCTGCTTCGCCGCCAGTATGA
1 GAAGACAAGATCTG-TTT-TTTGATCTACTTCACC-ACAGTATGG
* * ***
19049272 AAAGGCAAGATCTGTTATCTTTGATCTACTTCACGC-CAGTACAT
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCAC-CACAGTATGG
* * * *
19049316 GAAGAGAAGATTTGTTTTCTTCGATCTGCTTCACCACCGGTATGG
1 GAAGACAAGATCTGTTTT-TT-GATCTACTTCACCA-CAGTATGG
* ***
19049361 GAAGGCAAGATCTGTTATCTTTGATCTACTTCACGC-CAGTACAT
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCAC-CACAGTATGG
* * * *
19049405 GAAGACAATATCTATTTTTTTCGATCTACTTCGCCACCAGTATAG
1 GAAGACAAGATCT-GTTTTTT-GATCTACTTCACCA-CAGTATGG
* * ***
19049450 GAAGACAAGATCTGTTATCTTTGATCTACGTCACGC-CAATACAT
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCAC-CACAGTATGG
* * ** * *
19049494 GAAGACAAGATCTACTTTCTTCGATCTGTTTCGCCGCCAGTATGG
1 GAAGACAAGATCT-GTTT-TTTGATCTACTTCACC-ACAGTATGG
* **
19049539 GAAGGCAAGATCTGTTATCTTTGATCTACTTCACGC-CAGTATAT
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCAC-CACAGTATGG
* * *
19049583 GAAGACAAGATTTGTTTTCTTCGATCTGCTTCACCACCAATATGG
1 GAAGACAAGATCTGTTTT-TT-GATCTACTTCACCA-CAGTATGG
* * ***
19049628 GAAGACAAGATCTGGTATCTTTGATCTACTTCATGC-CAGTACAT
1 GAAGACAAGATCT-GT-TTTTTGATCTACTTCA-CCACAGTATGG
* * * * *
19049672 GAAGATAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATAG
1 GAAGACAAGATCTG-TTT-TTTGATCTACTTCACCA-CAGTATGG
*
19049717 GAAGGCAAGATCTGTT
1 GAAGACAAGATCTGTT
19049733 ATCTTTCAAC
Statistics
Matches: 896, Mismatches: 190, Indels: 167
0.72 0.15 0.13
Matches are distributed among these distances:
39 3 0.00
40 7 0.01
41 19 0.02
42 8 0.01
43 38 0.04
44 389 0.43
45 386 0.43
46 39 0.04
47 7 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (42 bp):
GAAGACAAGATCTGTTTTTTGATCTACTTCACCACAGTATGG
Found at i:19048662 original size:44 final size:44
Alignment explanation
Indices: 19048519--19049738 Score: 707
Period size: 45 Copynumber: 27.5 Consensus size: 44
19048509 TCCAATACAT
* * * *
19048519 GAAGACAAGGTCT-GTTCTTTTCGATCTACTCCACCATCAGTATGG
1 GAAGACAAGATCTATTTC-TTT-GATCTACTTCACCACCAGTATGG
* * *
19048564 GGAGACAAGATCTGTTGTCTTTGATCTA-TT-A-CACGCTA-AAT--
1 GAAGACAAGATCTATT-TCTTTGATCTACTTCACCAC-C-AGTATGG
**
19048605 GAAGACAAGATCTATTT-TTTCGATCTGTTTCACCACCAGTATGG
1 GAAGACAAGATCTATTTCTTT-GATCTACTTCACCACCAGTATGG
* * * * ***
19048649 GAAGACAATATCTATTATCTTTGATCTACTCCA-CGCTAGTACAC
1 GAAGACAAGATCTATT-TCTTTGATCTACTTCACCACCAGTATGG
* * *
19048693 GAAGACAAGATCTGCTTTCTTTGATCTGCTTCACCACTAGTATGG
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * * ***
19048738 GAAGGCAAGATCTGTTATCTTTGATCTACTTCA-CGCCAGTACAT
1 GAAGACAAGATCTATT-TCTTTGATCTACTTCACCACCAGTATGG
* *
19048782 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * * ***
19048827 GAAGACAAGATCTCGTATCTTTGATCTACTTCA-CGCCAGTACAT
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * **
19048871 GAAGACAAGATCTGTTTTCTTCGATCTACTTTGCCACCAGTATGG
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * * * ***
19048916 GAATACAAGATCTGGTATCTTTGATCTACTTCA-CGCCAGTACAT
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * * * * *
19048960 GAAGACAATATCTGCTTTCTTAGATCTGCTTCGCCGCCAGTATGG
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* ** * * * ***
19049005 AAAGGTAAGATTTGTTATCTTTGATCTACTTCA-CGCCAGTACAT
1 GAAGACAAGATCTATT-TCTTTGATCTACTTCACCACCAGTATGG
* * *
19049049 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * * * * ***
19049094 GAAGACAAGATCTGGTATCTTTGATGTACTTCA-CGCCAGAACAT
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * *
19049138 GAAGACAAGATCTGTTTTCTTTGATCTACTTCAGCGCCAGTATGG
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * * ***
19049183 GAAGACAAGATCTGGTATCTTTGATCTACTTCA-CGCCAGTACAT
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * * * * * *
19049227 GAAGACAAGATCTGCTTTATTCGATCTGCTTCGCCGCCAGTATGA
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * * * ***
19049272 AAAGGCAAGATCTGTTATCTTTGATCTACTTCA-CGCCAGTACAT
1 GAAGACAAGATCTATT-TCTTTGATCTACTTCACCACCAGTATGG
* * * * * *
19049316 GAAGAGAAGATTTGTTTTCTTCGATCTGCTTCACCACCGGTATGG
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * * ***
19049361 GAAGGCAAGATCTGTTATCTTTGATCTACTTCA-CGCCAGTACAT
1 GAAGACAAGATCTATT-TCTTTGATCTACTTCACCACCAGTATGG
* * * *
19049405 GAAGACAATATCTATTTTTTTCGATCTACTTCGCCACCAGTATAG
1 GAAGACAAGATCTATTTCTTT-GATCTACTTCACCACCAGTATGG
* * * * ***
19049450 GAAGACAAGATCTGTTATCTTTGATCTACGTCA-CGCCAATACAT
1 GAAGACAAGATCTATT-TCTTTGATCTACTTCACCACCAGTATGG
* ** * *
19049494 GAAGACAAGATCTACTTTCTTCGATCTGTTTCGCCGCCAGTATGG
1 GAAGACAAGATCTA-TTTCTTTGATCTACTTCACCACCAGTATGG
* * * **
19049539 GAAGGCAAGATCTGTTATCTTTGATCTACTTCA-CGCCAGTATAT
1 GAAGACAAGATCTATT-TCTTTGATCTACTTCACCACCAGTATGG
* * * * *
19049583 GAAGACAAGATTTGTTTTCTTCGATCTGCTTCACCACCAATATGG
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * ** ***
19049628 GAAGACAAGATCTGGTATCTTTGATCTACTTCA-TGCCAGTACAT
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* * * * * *
19049672 GAAGATAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATAG
1 GAAGACAAGATCT-ATTTCTTTGATCTACTTCACCACCAGTATGG
* *
19049717 GAAGGCAAGATCTGTTATCTTT
1 GAAGACAAGATCTATT-TCTTT
19049739 CAACCTGCTC
Statistics
Matches: 900, Mismatches: 236, Indels: 78
0.74 0.19 0.06
Matches are distributed among these distances:
39 3 0.00
40 6 0.01
41 17 0.02
42 6 0.01
43 11 0.01
44 420 0.47
45 424 0.47
46 11 0.01
47 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (44 bp):
GAAGACAAGATCTATTTCTTTGATCTACTTCACCACCAGTATGG
Found at i:19048740 original size:89 final size:89
Alignment explanation
Indices: 19048495--19049738 Score: 1694
Period size: 89 Copynumber: 14.0 Consensus size: 89
19048485 TCTGCTGTGC
* * * * * * *
19048495 TTGATCTACTTCACTCCAATACATGAAGACAAGGTCTGTTCTT-TTCGATCTACTCCACCATCAG
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTT-TTCTTCGATCTGCTTCGCCACCAG
* *
19048559 TATGGGGAGACAAGATCTGTTGTCT
65 TATGGGAAGACAAGATCTGTTATCT
* * * *
19048584 TTGATCTA-TTACACG-C--TAAATGAAGACAAGATCTATTTT-TTCGATCTGTTTCACCACCAG
1 TTGATCTACTT-CACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAG
* *
19048644 TATGGGAAGACAATATCTATTATCT
65 TATGGGAAGACAAGATCTGTTATCT
* * * * * * *
19048669 TTGATCTACTCCACGCTAGTACACGAAGACAAGATCTGCTTTCTTTGATCTGCTTCACCACTAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
*
19048734 ATGGGAAGGCAAGATCTGTTATCT
66 ATGGGAAGACAAGATCTGTTATCT
* *
19048758 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
19048823 ATGGGAAGACAAGATCTCG-TATCT
66 ATGGGAAGACAAGATCT-GTTATCT
* *
19048847 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTTGCCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
* *
19048912 ATGGGAATACAAGATCTGGTATCT
66 ATGGGAAGACAAGATCTGTTATCT
* * * *
19048936 TTGATCTACTTCACGCCAGTACATGAAGACAATATCTGCTTTCTTAGATCTGCTTCGCCGCCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
* ** *
19049001 ATGGAAAGGTAAGATTTGTTATCT
66 ATGGGAAGACAAGATCTGTTATCT
*
19049025 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
*
19049090 ATGGGAAGACAAGATCTGGTATCT
66 ATGGGAAGACAAGATCTGTTATCT
* * * * *
19049114 TTGATGTACTTCACGCCAGAACATGAAGACAAGATCTGTTTTCTTTGATCTACTTCAG-CGCCAG
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTC-GCCACCAG
*
19049178 TATGGGAAGACAAGATCTGGTATCT
65 TATGGGAAGACAAGATCTGTTATCT
* * *
19049203 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTATTCGATCTGCTTCGCCGCCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
** *
19049268 ATGAAAAGGCAAGATCTGTTATCT
66 ATGGGAAGACAAGATCTGTTATCT
* * * *
19049292 TTGATCTACTTCACGCCAGTACATGAAGAGAAGATTTGTTTTCTTCGATCTGCTTCACCACCGGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
*
19049357 ATGGGAAGGCAAGATCTGTTATCT
66 ATGGGAAGACAAGATCTGTTATCT
* * * *
19049381 TTGATCTACTTCACGCCAGTACATGAAGACAATATCTATTTTTTTCGATCTACTTCGCCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
*
19049446 ATAGGAAGACAAGATCTGTTATCT
66 ATGGGAAGACAAGATCTGTTATCT
* * ** * *
19049470 TTGATCTACGTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTGTTTCGCCGCCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
*
19049535 ATGGGAAGGCAAGATCTGTTATCT
66 ATGGGAAGACAAGATCTGTTATCT
* * * *
19049559 TTGATCTACTTCACGCCAGTATATGAAGACAAGATTTGTTTTCTTCGATCTGCTTCACCACCAAT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
*
19049624 ATGGGAAGACAAGATCTGGTATCT
66 ATGGGAAGACAAGATCTGTTATCT
* * *
19049648 TTGATCTACTTCATGCCAGTACATGAAGATAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
* *
19049713 ATAGGAAGGCAAGATCTGTTATCT
66 ATGGGAAGACAAGATCTGTTATCT
19049737 TT
1 TT
19049739 CAACCTGCTC
Statistics
Matches: 1023, Mismatches: 122, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
85 52 0.05
86 19 0.02
88 24 0.02
89 926 0.91
90 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32
Consensus pattern (89 bp):
TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
ATGGGAAGACAAGATCTGTTATCT
Found at i:19057841 original size:20 final size:20
Alignment explanation
Indices: 19057816--19057855 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
19057806 TAAAGGTCTT
*
19057816 TAATGCATATGATGCGATGC
1 TAATGCATATGATACGATGC
19057836 TAATGCATATGATACGATGC
1 TAATGCATATGATACGATGC
19057856 ATAAGATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30
Consensus pattern (20 bp):
TAATGCATATGATACGATGC
Found at i:19061154 original size:2 final size:2
Alignment explanation
Indices: 19061147--19061189 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
19061137 ATATTTACAA
19061147 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19061189 A
1 A
19061190 CAATATAACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:19064963 original size:18 final size:16
Alignment explanation
Indices: 19064928--19064967 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 16
19064918 CCCGGCTCAG
19064928 TAAACACCAAAAATAAA
1 TAAA-ACCAAAAATAAA
19064945 TAAAACCAATAAATAAAA
1 TAAAACCAA-AAAT-AAA
19064963 TAAAA
1 TAAAA
19064968 GTCCAAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.24
17 8 0.38
18 8 0.38
ACGTcount: A:0.72, C:0.12, G:0.00, T:0.15
Consensus pattern (16 bp):
TAAAACCAAAAATAAA
Found at i:19066090 original size:3 final size:3
Alignment explanation
Indices: 19066082--19066162 Score: 72
Period size: 3 Copynumber: 27.0 Consensus size: 3
19066072 ATTAGTTTAA
* * * * * *
19066082 TAT TAT TAT TAG TAT TAT TAT TTT TGT TGT TGT TGT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** *
19066130 TAT TAC TAT TAT TAT TGC TAT TAA TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
19066163 CTATATATAT
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:19066174 original size:18 final size:17
Alignment explanation
Indices: 19066118--19066178 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 17
19066108 TTGTTGTTGT
19066118 TATTATTAT-TATTATTA
1 TATTATTATCTATTA-TA
19066135 CTATTATTATTGCTATTA-A
1 -TATTATTA-T-CTATTATA
19066154 TATTATTATCTA-TATA
1 TATTATTATCTATTATA
19066170 TATATATTA
1 TAT-TATTA
19066179 ATTTACTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
15 2 0.05
16 7 0.18
17 6 0.16
18 16 0.42
19 2 0.05
21 5 0.13
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (17 bp):
TATTATTATCTATTATA
Found at i:19084024 original size:16 final size:16
Alignment explanation
Indices: 19084003--19084033 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
19083993 TGTTTTGTTT
19084003 TGATTGCATGGCATTA
1 TGATTGCATGGCATTA
*
19084019 TGATTGCATTGCATT
1 TGATTGCATGGCATT
19084034 TTCATCATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.42
Consensus pattern (16 bp):
TGATTGCATGGCATTA
Found at i:19088636 original size:41 final size:40
Alignment explanation
Indices: 19088579--19088694 Score: 133
Period size: 41 Copynumber: 2.8 Consensus size: 40
19088569 TGATTGAATG
* * * *
19088579 TAATTCAGACTTATTGTCTAGCAGGCTTGATGCCGGTGATA
1 TAATTCAGAC-TATTGTCTAGCAGGCTTAAAGCCAGTGAAA
19088620 TAATTCAGACTCATTGTCTAGCAGGCTTAAAGCCAGTGAAA
1 TAATTCAGACT-ATTGTCTAGCAGGCTTAAAGCCAGTGAAA
* * * *
19088661 TTATTCGGACTATAAGTCTAGCAGGCTAAAAGCC
1 TAATTCAGACTAT-TGTCTAGCAGGCTTAAAGCC
19088695 GGTGTATTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
40 3 0.05
41 62 0.95
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (40 bp):
TAATTCAGACTATTGTCTAGCAGGCTTAAAGCCAGTGAAA
Found at i:19089723 original size:21 final size:20
Alignment explanation
Indices: 19089681--19089723 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 20
19089671 TTATGTTTGA
19089681 ATTTGACTACATTTGATCATG
1 ATTTGACTACATTTGA-CATG
19089702 ATTTGAGCTTACATTTGA-ATG
1 ATTTGA-C-TACATTTGACATG
19089723 A
1 A
19089724 GATATTCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 10 0.50
22 1 0.05
23 9 0.45
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (20 bp):
ATTTGACTACATTTGACATG
Found at i:19090070 original size:47 final size:46
Alignment explanation
Indices: 19089954--19090072 Score: 143
Period size: 47 Copynumber: 2.6 Consensus size: 46
19089944 TGTTACAACT
* * * *
19089954 CGCAAAGGGCGTTTTGAGTCT--TAAAAAAGACTAAGGTGAAAACT
1 CGCAAAGGGCGCTTTGAGTCTAAAAAAAAAGACCAAGGTGAAAACC
* * *
19089998 CGCAAGGGGCGCCTTAAGTTCTAAAAAAAAAGACCAAGGTGAAAACC
1 CGCAAAGGGCGCTTTGAG-TCTAAAAAAAAAGACCAAGGTGAAAACC
19090045 CGCAAAGGGCGCTTTGAGTCATAAAAAA
1 CGCAAAGGGCGCTTTGAGTC-TAAAAAA
19090073 TAATATAAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
44 14 0.23
45 3 0.05
46 2 0.03
47 42 0.69
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.18
Consensus pattern (46 bp):
CGCAAAGGGCGCTTTGAGTCTAAAAAAAAAGACCAAGGTGAAAACC
Found at i:19091065 original size:24 final size:24
Alignment explanation
Indices: 19091019--19091066 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
19091009 TCAAATTTTA
*
19091019 TGAAGATTACAGTGGATTGAATCT
1 TGAAGATTACAGTGGATGGAATCT
*
19091043 TGAAGATTATAGTGGA-GGCAATCT
1 TGAAGATTACAGTGGATGG-AATCT
19091067 GGTTAAGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (24 bp):
TGAAGATTACAGTGGATGGAATCT
Found at i:19091614 original size:123 final size:123
Alignment explanation
Indices: 19091394--19092826 Score: 864
Period size: 123 Copynumber: 11.0 Consensus size: 123
19091384 GGCGTTACGA
* * *
19091394 CTGAAGACAGCGAATCTTATTTCATTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
1 CTGAAGACAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
* * ** *
19091459 TATTGTTTCCCTGGCATTATAGTGGAATAGATTAAAGCTGAAATAGAGTGGATTAAAG
66 TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAATAGAGTGGATTAAAG
* * ** * *
19091517 CTGAAGGCAGCGAATCTTATCTCATTGGCGTTATGGTGGAACAAATTAAAGCTAAAGGTAGTGAA
1 CTGAAGACAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
** * * * * * *
19091582 TCTTGTTTATCTAGCATTGCAGCGGAGCAGATTAAAGCTGAAAGCAGCGAATCTTATCTCCCTGG
66 TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAA-TA--G------A-----GTGG
*
19091647 TGTTAAAG
117 -ATTAAAG
* * * * *
19091655 CTGAAGATAGCGAATCTTATTTCCCTGGCGTTCCAGTGGAACAGATTAAAGTTAAAGGTAGCGAA
1 CTGAAGACAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
* * * * * *
19091720 TCTCGTTTCTCTGGCGTTGTAGTGGAATAGATTAAAGCTGAAGTGGAGTGGATTAAAG
66 TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAATAGAGTGGATTAAAG
* * * * * * * *
19091778 CTCAAGGCAGCGAATCCTATCTCCTTGGTGTTATAGTGTAGCAGATTAAAGCTAAAGGTAGTGAA
1 CTGAAGACAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
* * * * * ***
19091843 TCTTATTTCCTTAGCGTTGCAGTGGAGCAGATTAAAACTGAAGGCAGCAAATCTTATCTCCTTGG
66 TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATT---A---AA-GCTG-AAA---TA---GAGTGG
*
19091908 CGTTAAAG
117 -ATTAAAG
* * * * * * *
19091916 CTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAATGCTAAATGTAGCAAA
1 CTGAAGACAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
* * * * * **
19091981 TCTTGTTTCCCTGGCGTTGCAATGGAATAAATTAAAGCTAAAATGGAGCAGATTAAAG
66 TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAATAGAGTGGATTAAAG
* * ** * * *
19092039 CTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAATAGATTAAAGCTAAATGTAGTGAA
1 CTGAAGACAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
* * * * ***
19092104 TCTTGTTTCCCTGACGTTGTAGAGGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCCTAG
66 TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCT----G-A---AA---TA---GAGT-G
19092169 CG-TTAAAG
116 -GATTAAAG
* * * * * *
19092177 CTGAAGATAGCGAATCTTAT-TTCTGTGGCATTGCAGTGGAATAGATTAAAGCTAAAAGTAGCGA
1 CTGAAGACAGCGAATCTTATCTCCT-TGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGA
* * * *
19092241 ATCTTATTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCT-AAAGTGGAGTGGATTAAAA
65 ATCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAA-TAGAGTGGATTAAAG
* * * * * *
19092300 CTCAAGACAGTGAATCCTATCTCCTTGGTGTTACAGTGGAACAGATTAAAGCTGAAGATCA-CGA
1 CTGAAGACAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGT-AGCGA
* * * * *
19092364 ATCTTATTTCCCTGGCGTTGCAGCGGAGCAGATTAAAGCTGAAGGTAGTGAATCTTATCTCCTTG
65 ATCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAA---A-T--A---GA-----GTG
* *
19092429 GCGTTAAAT
116 G-ATTAAAG
* * * * *
19092438 CTGAAGATAGCGAATCTTATTTTCC-TGGCGTTGCAGTGGAACAGATTAAAACTAAAGGTAGTGA
1 CTGAAGACAGCGAATCTTA-TCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGA
* * * **
19092502 ATCTTGTTTCCTTGGCGTTGCAATGGAATAGATTAAAGCTGAAATAGAGCAGATTAAAG
65 ATCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAATAGAGTGGATTAAAG
* * * * *
19092561 CTGAAGGCAGCGAATCCTATCTCCTTGGCGTTACGGTGGAATAGATTAAAGCTAAATGTAGCGAA
1 CTGAAGACAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
** * * ***
19092626 TCTTGTTTCCCTGATGTTGTAGTGGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCCTGG
66 TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCT----G-A---AA---TA---GAGTGG
*
19092691 CGTTAAAG
117 -ATTAAAG
* * * * * * *
19092699 CTGAAGATAGTGAATCTTTTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAAGTAGCGAA
1 CTGAAGACAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
* * * *
19092764 TCTTATTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCT-AAAGTGGAGTGGATTGAAG
66 TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAA-TAGAGTGGATTAAAG
19092822 -TGAAG
1 CTGAAG
19092827 TCTTATCTCC
Statistics
Matches: 987, Mismatches: 240, Indels: 167
0.71 0.17 0.12
Matches are distributed among these distances:
122 10 0.01
123 447 0.45
124 16 0.02
126 2 0.00
127 7 0.01
128 2 0.00
129 8 0.01
130 6 0.01
131 8 0.01
132 7 0.01
134 5 0.01
135 3 0.00
137 14 0.01
138 447 0.45
139 5 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (123 bp):
CTGAAGACAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAAATAGAGTGGATTAAAG
Found at i:19091667 original size:36 final size:36
Alignment explanation
Indices: 19091613--19091682 Score: 106
Period size: 36 Copynumber: 1.9 Consensus size: 36
19091603 GCGGAGCAGA
19091613 TTAAAGCTGAAAGCAGCGAATCTTATCTCCCTGGTG
1 TTAAAGCTGAAAGCAGCGAATCTTATCTCCCTGGTG
* *
19091649 TTAAAGCTG-AAGATAGCGAATCTTATTTCCCTGG
1 TTAAAGCTGAAAG-CAGCGAATCTTATCTCCCTGG
19091683 CGTTCCAGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 3 0.10
36 28 0.90
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (36 bp):
TTAAAGCTGAAAGCAGCGAATCTTATCTCCCTGGTG
Found at i:19091766 original size:21 final size:21
Alignment explanation
Indices: 19091740--19091779 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
19091730 CTGGCGTTGT
19091740 AGTGGAATAGATTAAAGCTGA
1 AGTGGAATAGATTAAAGCTGA
* *
19091761 AGTGGAGTGGATTAAAGCT
1 AGTGGAATAGATTAAAGCT
19091780 CAAGGCAGCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.05, G:0.33, T:0.25
Consensus pattern (21 bp):
AGTGGAATAGATTAAAGCTGA
Found at i:19091836 original size:261 final size:260
Alignment explanation
Indices: 19091372--19092826 Score: 1998
Period size: 261 Copynumber: 5.6 Consensus size: 260
19091362 AAGACACCAG
* * **
19091372 TCTTATCTCCCTGGCGTT-ACGACTGAAGACAGCGAATCTTATTTCATTGGCGTTGCAGTGGAAC
1 TCTTATCTCCCTGGCGTTAAAG-CTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * ** *
19091436 AGATTAAAGCTAAAGGTAGCGAATATTGTTTCCCTGGCATTATAGTGGAATAGATTAAAGCTGAA
65 AGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAA
* * * *
19091501 ATAGAGTGGATTAAAGCTGAAGGCAGCGAATCTTATCTCATTGGCGTTATGGTGGAACAAATTAA
130 ATGGAGTGGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAACAGATTAA
** * *
19091566 AGCTAAAGGTAGTGAATCTTGTTTATCTAGCATTGCAGCGGAGCAGATTAAAGCTGAAAGCAGCG
195 AGCTAAAGGTAGTGAATCTTGTTTCCCT-GCGTTGCAGCGGAGCAGATTAAAGCTGAAGGCAGCG
19091631 AA
259 AA
* *
19091633 TCTTATCTCCCTGGTGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTCCAGTGGAACA
1 TCTTATCTCCCTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
* * * * * *
19091698 GATTAAAGTTAAAGGTAGCGAATCTCGTTTCTCTGGCGTTGTAGTGGAATAGATTAAAGCTGAAG
66 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAAA
* * * * *
19091763 TGGAGTGGATTAAAGCTCAAGGCAGCGAATCCTATCTCCTTGGTGTTATAGTGTAGCAGATTAAA
131 TGGAGTGGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAACAGATTAAA
* * * * *
19091828 GCTAAAGGTAGTGAATCTTATTTCCTTAGCGTTGCAGTGGAGCAGATTAAAACTGAAGGCAGCAA
196 GCTAAAGGTAGTGAATCTTGTTTCCCT-GCGTTGCAGCGGAGCAGATTAAAGCTGAAGGCAGCGA
19091893 A
260 A
*
19091894 TCTTATCTCCTTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
1 TCTTATCTCCCTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
* * * * *
19091959 GATTAATGCTAAATGTAGCAAATCTTGTTTCCCTGGCGTTGCAATGGAATAAATTAAAGCTAAAA
66 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAAA
** *
19092024 TGGAGCAGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAATAGATTAAA
131 TGGAGTGGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAACAGATTAAA
* * *
19092089 GCTAAATGTAGTGAATCTTGTTTCCCTGACGTTGTAGAGGAGCAGATTAAAGCTGAAGGCAGCGA
196 GCTAAAGGTAGTGAATCTTGTTTCCCTG-CGTTGCAGCGGAGCAGATTAAAGCTGAAGGCAGCGA
19092154 A
260 A
* ** * *
19092155 TCTTATCTCCCTAGCGTTAAAGCTGAAGATAGCGAATCTTATTTCTGTGGCATTGCAGTGGAATA
1 TCTTATCTCCCTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
* * *
19092220 GATTAAAGCTAAAAGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAAG
66 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAAA
* * * * * **
19092285 TGGAGTGGATTAAAACTCAAGACAGTGAATCCTATCTCCTTGGTGTTACAGTGGAACAGATTAAA
131 TGGAGTGGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAACAGATTAAA
* * * * * *
19092350 GCTGAAGATCA-CGAATCTTATTTCCCTGGCGTTGCAGCGGAGCAGATTAAAGCTGAAGGTAGTG
196 GCTAAAGGT-AGTGAATCTTGTTTCCCT-GCGTTGCAGCGGAGCAGATTAAAGCTGAAGGCAGCG
19092414 AA
259 AA
* * *
19092416 TCTTATCTCCTTGGCGTTAAATCTGAAGATAGCGAATCTTATTTTCCTGGCGTTGCAGTGGAACA
1 TCTTATCTCCCTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
* * * * *
19092481 GATTAAAACTAAAGGTAGTGAATCTTGTTTCCTTGGCGTTGCAATGGAATAGATTAAAGCTGAAA
66 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAAA
* ** * *
19092546 TAGAGCAGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTACGGTGGAATAGATTAAA
131 TGGAGTGGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAACAGATTAAA
* * * * *
19092611 GCTAAATGTAGCGAATCTTGTTTCCCTGATGTTGTAGTGGAGCAGATTAAAGCTGAAGGCAGCGA
196 GCTAAAGGTAGTGAATCTTGTTTCCCTG-CGTTGCAGCGGAGCAGATTAAAGCTGAAGGCAGCGA
19092676 A
260 A
* *
19092677 TCTTATCTCCCTGGCGTTAAAGCTGAAGATAGTGAATCTTTTTTCCCTGGCGTTGCAGTGGAACA
1 TCTTATCTCCCTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
* * *
19092742 GATTAAAGCTAAAAGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAAG
66 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAAA
*
19092807 TGGAGTGGATTGAAG-TGAAG
131 TGGAGTGGATTAAAGCTGAAG
19092827 TCTTATCTCC
Statistics
Matches: 1044, Mismatches: 144, Indels: 13
0.87 0.12 0.01
Matches are distributed among these distances:
260 8 0.01
261 1032 0.99
262 4 0.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (260 bp):
TCTTATCTCCCTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAAA
TGGAGTGGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAACAGATTAAA
GCTAAAGGTAGTGAATCTTGTTTCCCTGCGTTGCAGCGGAGCAGATTAAAGCTGAAGGCAGCGAA
Found at i:19091854 original size:51 final size:51
Alignment explanation
Indices: 19091761--19091912 Score: 169
Period size: 51 Copynumber: 3.0 Consensus size: 51
19091751 TTAAAGCTGA
** * * * *
19091761 AGTGGAGTGGATTAAAGCTCAAGGCAGCGAATCCTATCTCCTTGGTGTTAT
1 AGTGGAGCAGATTAAAGCTAAAGGCAGCGAATCTTATCTCCTTGGCGTTAC
* * * * * *
19091812 AGTGTAGCAGATTAAAGCTAAAGGTAGTGAATCTTATTTCCTTAGCGTTGC
1 AGTGGAGCAGATTAAAGCTAAAGGCAGCGAATCTTATCTCCTTGGCGTTAC
* * *
19091863 AGTGGAGCAGATTAAAACTGAAGGCAGCAAATCTTATCTCCTTGGCGTTA
1 AGTGGAGCAGATTAAAGCTAAAGGCAGCGAATCTTATCTCCTTGGCGTTA
19091913 AAGCTGAAGA
Statistics
Matches: 80, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 80 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (51 bp):
AGTGGAGCAGATTAAAGCTAAAGGCAGCGAATCTTATCTCCTTGGCGTTAC
Found at i:19091921 original size:36 final size:36
Alignment explanation
Indices: 19091874--19091947 Score: 94
Period size: 36 Copynumber: 2.1 Consensus size: 36
19091864 GTGGAGCAGA
* *
19091874 TTAAAACTGAAGGCAGCAAATCTTATCTCCTTGGCG
1 TTAAAACTGAAGACAGCAAATCTTATCTCCCTGGCG
* * * *
19091910 TTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCG
1 TTAAAACTGAAGACAGCAAATCTTATCTCCCTGGCG
19091946 TT
1 TT
19091948 GCAGTGGAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (36 bp):
TTAAAACTGAAGACAGCAAATCTTATCTCCCTGGCG
Found at i:19091979 original size:87 final size:87
Alignment explanation
Indices: 19091823--19091998 Score: 226
Period size: 87 Copynumber: 2.0 Consensus size: 87
19091813 GTGTAGCAGA
* * * * *
19091823 TTAAAGCTAAAGGTAGTGAATCTTATTTCCTTAGCGTTGCAGTGGAGCAGATTAAAACTGAAGGC
1 TTAAAGCTAAAGATAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAACTAAAGGC
*
19091888 AGCAAATCTTATCTCCTTGGCG
66 AGCAAATCTTATCTCCCTGGCG
* * ** * *
19091910 TTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAATGCTAAATGT
1 TTAAAGCTAAAGATAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAACTAAAGGC
* *
19091975 AGCAAATCTTGTTTCCCTGGCG
66 AGCAAATCTTATCTCCCTGGCG
19091997 TT
1 TT
19091999 GCAATGGAAT
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
87 75 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (87 bp):
TTAAAGCTAAAGATAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAACTAAAGGC
AGCAAATCTTATCTCCCTGGCG
Found at i:19092007 original size:51 final size:51
Alignment explanation
Indices: 19091910--19092022 Score: 147
Period size: 51 Copynumber: 2.2 Consensus size: 51
19091900 CTCCTTGGCG
* * * *
19091910 TTAAAGCTGAA-GATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGA
1 TTAAAGCTAAATG-TAGCAAATCTTATTTCCCTGGCGTTGCAATGGAACAAA
* * *
19091961 TTAATGCTAAATGTAGCAAATCTTGTTTCCCTGGCGTTGCAATGGAATAAA
1 TTAAAGCTAAATGTAGCAAATCTTATTTCCCTGGCGTTGCAATGGAACAAA
19092012 TTAAAGCTAAA
1 TTAAAGCTAAA
19092023 ATGGAGCAGA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
51 52 0.98
52 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (51 bp):
TTAAAGCTAAATGTAGCAAATCTTATTTCCCTGGCGTTGCAATGGAACAAA
Found at i:19092157 original size:51 final size:51
Alignment explanation
Indices: 19092025--19092166 Score: 158
Period size: 51 Copynumber: 2.8 Consensus size: 51
19092015 AAGCTAAAAT
* * * * *
19092025 GGAGCAGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGT
1 GGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCCTGACGTTATAGA
** * * * * * * *
19092076 GGAATAGATTAAAGCTAAATGTAGTGAATCTTGTTTCCCTGACGTTGTAGA
1 GGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCCTGACGTTATAGA
19092127 GGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCCT
1 GGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCCT
19092167 AGCGTTAAAG
Statistics
Matches: 69, Mismatches: 22, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (51 bp):
GGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCCTGACGTTATAGA
Found at i:19092247 original size:51 final size:52
Alignment explanation
Indices: 19092171--19092283 Score: 176
Period size: 51 Copynumber: 2.2 Consensus size: 52
19092161 CTCCCTAGCG
* **
19092171 TTAAAGCT-GAAGATAGCGAATCTTATTTCTGTGGCATTGCAGTGGAATAGA
1 TTAAAGCTAAAAGATAGCGAATCTTATTTCCCTGGCATTGCAGTGGAATAGA
*
19092222 TTAAAGCTAAAAG-TAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAATAGA
1 TTAAAGCTAAAAGATAGCGAATCTTATTTCCCTGGCATTGCAGTGGAATAGA
19092273 TTAAAGCTAAA
1 TTAAAGCTAAA
19092284 GTGGAGTGGA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
51 54 0.95
52 3 0.05
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (52 bp):
TTAAAGCTAAAAGATAGCGAATCTTATTTCCCTGGCATTGCAGTGGAATAGA
Found at i:19092347 original size:51 final size:51
Alignment explanation
Indices: 19092292--19092434 Score: 162
Period size: 51 Copynumber: 2.8 Consensus size: 51
19092282 AAGTGGAGTG
* * * * *
19092292 GATTAAAACTCAAGACAGTGAATCCTATCTCCTTGGTGTTACAGTGGAACA
1 GATTAAAGCTGAAGACAGTGAATCTTATCTCCTTGGCGTTACAGCGGAACA
* * * * *
19092343 GATTAAAGCTGAAGATCA-CGAATCTTATTTCCCTGGCGTTGCAGCGGAGCA
1 GATTAAAGCTGAAGA-CAGTGAATCTTATCTCCTTGGCGTTACAGCGGAACA
**
19092394 GATTAAAGCTGAAGGTAGTGAATCTTATCTCCTTGGCGTTA
1 GATTAAAGCTGAAGACAGTGAATCTTATCTCCTTGGCGTTA
19092435 AATCTGAAGA
Statistics
Matches: 74, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
50 1 0.01
51 71 0.96
52 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (51 bp):
GATTAAAGCTGAAGACAGTGAATCTTATCTCCTTGGCGTTACAGCGGAACA
Found at i:19092368 original size:522 final size:522
Alignment explanation
Indices: 19091372--19092817 Score: 2214
Period size: 522 Copynumber: 2.8 Consensus size: 522
19091362 AAGACACCAG
* * * **
19091372 TCTTATCTCCCTGGCGTT-ACGACTGAAGACAGCGAATCTTATTTCATTGGCGTTGCAGTGGAAC
1 TCTTATCTCCTTGGCGTTAAAG-CTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
* * ** *
19091436 AGATTAAAGCTAAAGGTAGCGAATATTGTTTCCCTGGCATTATAGTGGAATAGATTAAAGCTGAA
65 AGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGCAATGGAATAGATTAAAGCTGAA
** * * * *
19091501 ATAGAGTGGATTAAAGCTGAAGGCAGCGAATCTTATCTCATTGGCGTTATGGTGGAACAAATTAA
130 ATAGAGCAGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAATAGATTAA
* ** * * * *
19091566 AGCTAAAGGTAGTGAATCTTGTTTATCT-AGCATTGCAGCGGAGCAGATTAAAGCTGAAAGCAGC
195 AGCTAAATGTAGTGAATCTTGTTTCCCTGA-CGTTGTAGAGGAGCAGATTAAAGCTGAAGGCAGC
* *
19091630 GAATCTTATCTCCCTGGTGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTCCAGTGGA
259 GAATCTTATCTCCCTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGA
* * ** * * *
19091695 ACAGATTAAAGTTAAAGGTAGCGAATCTCGTTTCTCTGGCGTTGTAGTGGAATAGATTAAAGCTG
324 ACAGATTAAAGCTAAAAGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTA
* * * * *
19091760 AAGTGGAGTGGATTAAAGCTCAAGGCAGCGAATCCTATCTCCTTGGTGTTATAGTGTAGCAGATT
389 AAGTGGAGTGGATTAAAACTCAAGACAGCGAATCCTATCTCCTTGGTGTTACAGTGGAACAGATT
* * * *
19091825 AAAGCTAAAGGTAGTGAATCTTATTTCCTTAGCGTTGCAGTGGAGCAGATTAAAACTGAAGGCAG
454 AAAGCTAAAGATAGCGAATCTTATTTCCCTAGCGTTGCAGCGGAGCAGATTAAAACTGAAGGCAG
19091890 CAAA
519 CAAA
19091894 TCTTATCTCCTTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
1 TCTTATCTCCTTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
* * * * *
19091959 GATTAATGCTAAATGTAGCAAATCTTGTTTCCCTGGCGTTGCAATGGAATAAATTAAAGCTAAAA
66 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGCAATGGAATAGATTAAAGCTGAAA
*
19092024 TGGAGCAGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAATAGATTAAA
131 TAGAGCAGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAATAGATTAAA
19092089 GCTAAATGTAGTGAATCTTGTTTCCCTGACGTTGTAGAGGAGCAGATTAAAGCTGAAGGCAGCGA
196 GCTAAATGTAGTGAATCTTGTTTCCCTGACGTTGTAGAGGAGCAGATTAAAGCTGAAGGCAGCGA
* ** * *
19092154 ATCTTATCTCCCTAGCGTTAAAGCTGAAGATAGCGAATCTTATTTCTGTGGCATTGCAGTGGAAT
261 ATCTTATCTCCCTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
19092219 AGATTAAAGCTAAAAGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAA
326 AGATTAAAGCTAAAAGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAA
*
19092284 GTGGAGTGGATTAAAACTCAAGACAGTGAATCCTATCTCCTTGGTGTTACAGTGGAACAGATTAA
391 GTGGAGTGGATTAAAACTCAAGACAGCGAATCCTATCTCCTTGGTGTTACAGTGGAACAGATTAA
* * * * *
19092349 AGCTGAAGATCA-CGAATCTTATTTCCCTGGCGTTGCAGCGGAGCAGATTAAAGCTGAAGGTAGT
456 AGCTAAAGAT-AGCGAATCTTATTTCCCTAGCGTTGCAGCGGAGCAGATTAAAACTGAAGGCAGC
*
19092413 GAA
520 AAA
* *
19092416 TCTTATCTCCTTGGCGTTAAATCTGAAGATAGCGAATCTTATTTTCCTGGCGTTGCAGTGGAACA
1 TCTTATCTCCTTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
* * *
19092481 GATTAAAACTAAAGGTAGTGAATCTTGTTTCCTTGGCGTTGCAATGGAATAGATTAAAGCTGAAA
66 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGCAATGGAATAGATTAAAGCTGAAA
*
19092546 TAGAGCAGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTACGGTGGAATAGATTAAA
131 TAGAGCAGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAATAGATTAAA
* * *
19092611 GCTAAATGTAGCGAATCTTGTTTCCCTGATGTTGTAGTGGAGCAGATTAAAGCTGAAGGCAGCGA
196 GCTAAATGTAGTGAATCTTGTTTCCCTGACGTTGTAGAGGAGCAGATTAAAGCTGAAGGCAGCGA
* *
19092676 ATCTTATCTCCCTGGCGTTAAAGCTGAAGATAGTGAATCTTTTTTCCCTGGCGTTGCAGTGGAAC
261 ATCTTATCTCCCTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
19092741 AGATTAAAGCTAAAAGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAA
326 AGATTAAAGCTAAAAGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAA
19092806 GTGGAGTGGATT
391 GTGGAGTGGATT
19092818 GAAGTGAAGT
Statistics
Matches: 840, Mismatches: 81, Indels: 6
0.91 0.09 0.01
Matches are distributed among these distances:
522 836 1.00
523 4 0.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (522 bp):
TCTTATCTCCTTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCGTTGCAATGGAATAGATTAAAGCTGAAA
TAGAGCAGATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATGGTGGAATAGATTAAA
GCTAAATGTAGTGAATCTTGTTTCCCTGACGTTGTAGAGGAGCAGATTAAAGCTGAAGGCAGCGA
ATCTTATCTCCCTGGCGTTAAAGCTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
AGATTAAAGCTAAAAGTAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAATAGATTAAAGCTAAA
GTGGAGTGGATTAAAACTCAAGACAGCGAATCCTATCTCCTTGGTGTTACAGTGGAACAGATTAA
AGCTAAAGATAGCGAATCTTATTTCCCTAGCGTTGCAGCGGAGCAGATTAAAACTGAAGGCAGCA
AA
Found at i:19092496 original size:87 final size:87
Alignment explanation
Indices: 19092345--19092520 Score: 264
Period size: 87 Copynumber: 2.0 Consensus size: 87
19092335 GTGGAACAGA
* * *
19092345 TTAAAGCTGAAGATCACGAATCTTATTTCCCTGGCGTTGCAGCGGAGCAGATTAAAGCTGAAGGT
1 TTAAAGCTGAAGATCACGAATCTTATTTCCCTGGCGTTGCAGCGGAACAGATTAAAACTAAAGGT
19092410 AGTGAATCTTATCTCCTTGGCG
66 AGTGAATCTTATCTCCTTGGCG
* * *
19092432 TTAAATCTGAAGAT-AGCGAATCTTATTTTCCTGGCGTTGCAGTGGAACAGATTAAAACTAAAGG
1 TTAAAGCTGAAGATCA-CGAATCTTATTTCCCTGGCGTTGCAGCGGAACAGATTAAAACTAAAGG
* *
19092496 TAGTGAATCTTGTTTCCTTGGCG
65 TAGTGAATCTTATCTCCTTGGCG
19092519 TT
1 TT
19092521 GCAATGGAAT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
86 1 0.01
87 79 0.99
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (87 bp):
TTAAAGCTGAAGATCACGAATCTTATTTCCCTGGCGTTGCAGCGGAACAGATTAAAACTAAAGGT
AGTGAATCTTATCTCCTTGGCG
Found at i:19092704 original size:36 final size:36
Alignment explanation
Indices: 19092657--19092730 Score: 103
Period size: 36 Copynumber: 2.1 Consensus size: 36
19092647 GTGGAGCAGA
*
19092657 TTAAAGCTGAAGGCAGCGAATCTTATCTCCCTGGCG
1 TTAAAGCTGAAGACAGCGAATCTTATCTCCCTGGCG
* * * *
19092693 TTAAAGCTGAAGATAGTGAATCTTTTTTCCCTGGCG
1 TTAAAGCTGAAGACAGCGAATCTTATCTCCCTGGCG
19092729 TT
1 TT
19092731 GCAGTGGAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (36 bp):
TTAAAGCTGAAGACAGCGAATCTTATCTCCCTGGCG
Found at i:19092762 original size:87 final size:87
Alignment explanation
Indices: 19092606--19092781 Score: 237
Period size: 87 Copynumber: 2.0 Consensus size: 87
19092596 GTGGAATAGA
* * * * *
19092606 TTAAAGCTAAATGTAGCGAATCTTGTTTCCCTGATGTTGTAGTGGAGCAGATTAAAGCTGAAGGC
1 TTAAAGCTAAATGTAGCGAATCTTGTTTCCCTGACGTTGCAGTGGAACAGATTAAAGCTAAAAGC
19092671 AGCGAATCTTATCTCCCTGGCG
66 AGCGAATCTTATCTCCCTGGCG
* * * *
19092693 TTAAAGCTGAA-GATAGTGAATCTTTTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAAG
1 TTAAAGCTAAATG-TAGCGAATCTTGTTTCCCTGACGTTGCAGTGGAACAGATTAAAGCTAAAAG
* *
19092757 TAGCGAATCTTATTTCCCTGGCG
65 CAGCGAATCTTATCTCCCTGGCG
19092780 TT
1 TT
19092782 GCAGTGGAAT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
86 1 0.01
87 76 0.99
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (87 bp):
TTAAAGCTAAATGTAGCGAATCTTGTTTCCCTGACGTTGCAGTGGAACAGATTAAAGCTAAAAGC
AGCGAATCTTATCTCCCTGGCG
Found at i:19092773 original size:51 final size:52
Alignment explanation
Indices: 19092693--19092805 Score: 176
Period size: 51 Copynumber: 2.2 Consensus size: 52
19092683 CTCCCTGGCG
* * *
19092693 TTAAAGCT-GAAGATAGTGAATCTTTTTTCCCTGGCGTTGCAGTGGAACAGA
1 TTAAAGCTAAAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGA
*
19092744 TTAAAGCTAAAAG-TAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAATAGA
1 TTAAAGCTAAAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGA
19092795 TTAAAGCTAAA
1 TTAAAGCTAAA
19092806 GTGGAGTGGA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
51 54 0.95
52 3 0.05
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (52 bp):
TTAAAGCTAAAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGA
Found at i:19093452 original size:3 final size:3
Alignment explanation
Indices: 19093444--19093536 Score: 78
Period size: 3 Copynumber: 31.0 Consensus size: 3
19093434 ATTAGTTTAA
* * * * * * * * *
19093444 TAT TAT TAT TAG TAT TAT TAT TGT TGT TGT TGT TGT TGT TGT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
19093492 TAT TAT TAT TAT TAC TAT TAT TAT TGT TAT TAA TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
19093537 CTATATATAT
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 80 1.00
ACGTcount: A:0.25, C:0.01, G:0.11, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:19098402 original size:19 final size:17
Alignment explanation
Indices: 19098378--19098412 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
19098368 AAACAGTTTG
19098378 TAAAGATAAATATAAAAAT
1 TAAAGA-AAATA-AAAAAT
19098397 TAAAGAAAATAAAAAA
1 TAAAGAAAATAAAAAA
19098413 AACGAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (17 bp):
TAAAGAAAATAAAAAAT
Found at i:19098414 original size:19 final size:19
Alignment explanation
Indices: 19098378--19098413 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
19098368 AAACAGTTTG
*
19098378 TAAAGATAAATATAAAAAT
1 TAAAGATAAATAAAAAAAT
19098397 TAAAGA-AAATAAAAAAA
1 TAAAGATAAATAAAAAAA
19098414 ACGAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (19 bp):
TAAAGATAAATAAAAAAAT
Found at i:19102159 original size:9 final size:9
Alignment explanation
Indices: 19102145--19102193 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
19102135 TTTGGTTAAA
19102145 AATTAACCG
1 AATTAACCG
19102154 AATTAACCG
1 AATTAACCG
*
19102163 AATTACCCG
1 AATTAACCG
* *
19102172 AATTTACCA
1 AATTAACCG
*
19102181 AATTAACCA
1 AATTAACCG
19102190 AATT
1 AATT
19102194 GAATCACTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.45, C:0.22, G:0.06, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:19102340 original size:18 final size:18
Alignment explanation
Indices: 19102304--19102343 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
19102294 TTTATGATTT
**
19102304 GGTTGGGTTGGGTAATTG
1 GGTTGGGTTGAATAATTG
*
19102322 GGTTGGGTTGAATACTTG
1 GGTTGGGTTGAATAATTG
19102340 GGTT
1 GGTT
19102344 TAGATTGGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.12, C:0.03, G:0.45, T:0.40
Consensus pattern (18 bp):
GGTTGGGTTGAATAATTG
Found at i:19106946 original size:19 final size:21
Alignment explanation
Indices: 19106905--19106947 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
19106895 ATGAACCCCA
19106905 AACCCCAAACACTAAACCTTG
1 AACCCCAAACACTAAACCTTG
*
19106926 AACCCCAAACTC-AAA-CTTG
1 AACCCCAAACACTAAACCTTG
19106945 AAC
1 AAC
19106948 TTTGGATCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 3 0.14
21 11 0.52
ACGTcount: A:0.44, C:0.37, G:0.05, T:0.14
Consensus pattern (21 bp):
AACCCCAAACACTAAACCTTG
Found at i:19106997 original size:13 final size:14
Alignment explanation
Indices: 19106981--19107018 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
19106971 AGGTTTAGGG
19106981 TTTAGGGTTCAA-A
1 TTTAGGGTTCAAGA
* *
19106994 TTTAGGATTCAAGG
1 TTTAGGGTTCAAGA
19107008 TTTAGGGTTCA
1 TTTAGGGTTCA
19107019 TAGTAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.39
Consensus pattern (14 bp):
TTTAGGGTTCAAGA
Found at i:19113057 original size:105 final size:101
Alignment explanation
Indices: 19112865--19113060 Score: 243
Period size: 105 Copynumber: 1.9 Consensus size: 101
19112855 GAATTGACGG
* *
19112865 ATAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAGCTGGTCTATGACATTTTA
1 ATAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACAATAGCTGGTCTATGACATTCTA
*
19112930 ATGAAAAGACCACAATTGGGTTATGGCACCTTGAAC
66 ATGAAAAGACCACAACTGGGTTATGGCACCTTGAAC
* *
19112966 ATAAGACCATGGTTGGACCATGGCAGTATAG-TTACATGTGTAAGACAATAGTTAGG-CTATGAC
1 ATAAGACCATGGTTGGACCATGGCA--AT-GTTTA-A-ATGTAAGACAATAGCT-GGTCTATGAC
* * * *
19113029 ATTCTGATGATAAGATCATAACTGGGTTATGG
60 ATTCTAATGAAAAGACCACAACTGGGTTATGG
19113061 ACTACAAATG
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
101 25 0.31
103 5 0.06
104 2 0.03
105 46 0.57
106 2 0.03
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (101 bp):
ATAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACAATAGCTGGTCTATGACATTCTA
ATGAAAAGACCACAACTGGGTTATGGCACCTTGAAC
Found at i:19113786 original size:33 final size:32
Alignment explanation
Indices: 19113749--19113844 Score: 91
Period size: 33 Copynumber: 3.2 Consensus size: 32
19113739 TGAGTTAATG
19113749 CATGACTTAATTTAATGATGCACACTTAACTAA
1 CATGACTTAATTTAATGATGCA-ACTTAACTAA
* *
19113782 CATGA---AAGTT-A-CAT--AA-TTAAACTAA
1 CATGACTTAATTTAATGATGCAACTT-AACTAA
19113807 CATGACTTAATTTAATGATGCAAACTTAACTAA
1 CATGACTTAATTTAATGATGC-AACTTAACTAA
19113840 CATGA
1 CATGA
19113845 AAGTTACATA
Statistics
Matches: 49, Mismatches: 4, Indels: 20
0.67 0.05 0.27
Matches are distributed among these distances:
24 2 0.04
25 12 0.24
26 1 0.02
28 6 0.12
29 2 0.04
30 6 0.12
33 18 0.37
34 2 0.04
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (32 bp):
CATGACTTAATTTAATGATGCAACTTAACTAA
Found at i:19115146 original size:42 final size:42
Alignment explanation
Indices: 19115088--19115182 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
19115078 ATTAATTATA
* ** *
19115088 AATAAT-AATTATAAAATTAATGGATGTTCACACTATT-TTAC
1 AATAATGATTTATAAAATTAATAAATATTCACACT-TTCTTAC
*
19115129 AATAATGATTTATAAAATTAATAAATATTCACTCTTTCTTAC
1 AATAATGATTTATAAAATTAATAAATATTCACACTTTCTTAC
19115171 AATAATGATTTA
1 AATAATGATTTA
19115183 CTATAATATG
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
41 8 0.17
42 39 0.83
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.41
Consensus pattern (42 bp):
AATAATGATTTATAAAATTAATAAATATTCACACTTTCTTAC
Found at i:19118543 original size:2 final size:2
Alignment explanation
Indices: 19118531--19118567 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
19118521 GAAATTGCAA
*
19118531 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
19118568 AATGAGGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:19119204 original size:12 final size:11
Alignment explanation
Indices: 19119177--19119210 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
19119167 ATACGTTATT
19119177 TAAAAATAAAA
1 TAAAAATAAAA
*
19119188 GAAAAATACAAA
1 TAAAAATA-AAA
19119200 TAAAAATAAAA
1 TAAAAATAAAA
19119211 AAATCGAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:19120377 original size:88 final size:88
Alignment explanation
Indices: 19120246--19121276 Score: 1597
Period size: 88 Copynumber: 11.8 Consensus size: 88
19120236 ACCGCTTAGG
* * * * * ** * *
19120246 GAGGCAAGGCTTGTATCTTCGATCTGCTTCGTTGTCAATGCAAGAAGGCAAGATCTGCTATCTTT
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
*
19120311 GACCAGCTCCA-CTACAACCGAGA
66 AACCAGCTCCATC-ACAACCGAGA
* * * *
19120334 GAGGTAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAAGAAGGCAAGATCTATTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
19120399 AACCAGCTCCATCACAACCGAGA
66 AACCAGCTCCATCACAACCGAGA
* * *
19120422 GAGGCAAGGTTTGTCTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGAAAGATCTGTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
*
19120487 AACCAGCTCCACCACAACCGAGA
66 AACCAGCTCCATCACAACCGAGA
* *
19120510 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTATCAATGCAGGAAGGCAAGATCTATTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
19120575 AACCAGCTCCATCACAACCGAGA
66 AACCAGCTCCATCACAACCGAGA
** * *
19120598 GAGGCAAGGTTTACGTCTTCGACCTGCTTCGCTATCAATGCAGGAAGGCAAGATCTATTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
19120663 AACCAGCTCCATCACAACCGAGA
66 AACCAGCTCCATCACAACCGAGA
** *
19120686 GAGGCAAGGTTTACGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGC-A-ATCTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
*
19120749 AACCAGCTTCATCACAACCGAGA
66 AACCAGCTCCATCACAACCGAGA
* *
19120772 GAGGCAATGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
19120837 AACCAGCTCCATCACAACCGAGA
66 AACCAGCTCCATCACAACCGAGA
*
19120860 GAGGTAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
*
19120925 AACCAGCTCTATCACAACCGAGA
66 AACCAGCTCCATCACAACCGAGA
* * * * *
19120948 GAGGTAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATACAGGAAGGTAAGATCTATTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
*
19121013 AACCAGCT-C-TGCTACAACTGAGA
66 AACCAGCTCCAT-C-ACAACCGAGA
* * *
19121036 GAGACAAGGTTTGTGTCTTTGACCTACTTCGCT-TCAATGCAGGAAGGCAAGATCTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
19121100 AACCAGCTCCATCACAACCGAGA
66 AACCAGCTCCATCACAACCGAGA
*
19121123 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
19121188 AACCAGCTCCATCACAACCGAGA
66 AACCAGCTCCATCACAACCGAGA
* *
19121211 GAGGTAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTCTCTTC
1 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
19121276 A
66 A
19121277 NNNNNNNNNN
Statistics
Matches: 876, Mismatches: 59, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
86 79 0.09
87 77 0.09
88 718 0.82
89 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (88 bp):
GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
AACCAGCTCCATCACAACCGAGA
Found at i:19120889 original size:350 final size:353
Alignment explanation
Indices: 19120261--19121276 Score: 1632
Period size: 350 Copynumber: 2.9 Consensus size: 353
19120251 AAGGCTTGTA
* * * ** * **
19120261 TCTTCGATCTGCTTCGTTGTCAATGCAAGAAGGCAAGATCTGCTATCTTTGACCAGCTCCA-CTA
1 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCATCTA
* * *
19120325 CAACCGAGAGAGGTAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAAGAAGGCAAGATCT
66 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
* * *
19120390 ATTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTCTCTTCGACCTGCTTCGCT
131 TTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCT
* * * *
19120455 GTCAATGCAGGAAGGAAAGATCTGTTGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCAAGGT
196 GTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGTAAGGT
* *
19120520 TTGTGTCTTCGACCTGCTTCGCTATCAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCC
261 TTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCC
19120585 ATCACAACCGAGAGAGGCAAGGTTTACG
326 ATCACAACCGAGAGAGGCAAGGTTTACG
*
19120613 TCTTCGACCTGCTTCGCTATCAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCATC-A
1 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCATCTA
** *
19120677 CAACCGAGAGAGGCAAGGTTTACGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGC-A-ATCT
66 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
* *
19120740 TTTGTCTTCAACCAGCTTCATCACAACCGAGAGAGGCAATGTTTGTGTCTTCGATCTGCTTCGCT
131 TTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCT
19120805 GTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGTAAGGT
196 GTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGTAAGGT
*
19120870 TTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCT
261 TTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCC
* **
19120935 ATCACAACCGAGAGAGGTAAGGTTTGTG
326 ATCACAACCGAGAGAGGCAAGGTTTACG
* * *
19120963 TCTTCGACCTGCTTCACTGTCAATACAGGAAGGTAAGATCTATTGTCTTCAACCAGCT-C-TGCT
1 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCAT-CT
* * * *
19121026 ACAACTGAGAGAGACAAGGTTTGTGTCTTTGACCTACTTCGCT-TCAATGCAGGAAGGCAAGATC
65 ACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
19121090 TTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGC
130 TTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGC
19121155 TGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGTAAGG
195 TGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGTAAGG
*
19121220 TTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTCTCTTCA
260 TTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCA
19121277 NNNNNNNNNN
Statistics
Matches: 615, Mismatches: 44, Indels: 11
0.92 0.07 0.02
Matches are distributed among these distances:
348 1 0.00
349 16 0.03
350 304 0.49
351 188 0.31
352 105 0.17
353 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (353 bp):
TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCATCTA
CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
TTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCT
GTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGTAAGGT
TTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCC
ATCACAACCGAGAGAGGCAAGGTTTACG
Found at i:19123081 original size:21 final size:21
Alignment explanation
Indices: 19123055--19123101 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
19123045 GGTATTGCAG
19123055 GATCACCACATGCCCCAATCT
1 GATCACCACATGCCCCAATCT
** *
19123076 GATCACTTCATGCCCCATTCT
1 GATCACCACATGCCCCAATCT
19123097 GATCA
1 GATCA
19123102 ATATTTGAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.38, G:0.11, T:0.26
Consensus pattern (21 bp):
GATCACCACATGCCCCAATCT
Found at i:19123206 original size:8 final size:8
Alignment explanation
Indices: 19123195--19123231 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
19123185 CCATTTTTAC
19123195 TTTTTCAT
1 TTTTTCAT
19123203 TTTTTCAT
1 TTTTTCAT
19123211 TTTTTCAT
1 TTTTTCAT
*
19123219 TTTTTAAT
1 TTTTTCAT
19123227 TTTTT
1 TTTTT
19123232 TGACTCAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.14, C:0.08, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTCAT
Found at i:19124049 original size:13 final size:13
Alignment explanation
Indices: 19124026--19124058 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
19124016 TTGACCTCTC
19124026 CTTTTTCTTTTTCT
1 CTTTTT-TTTTTCT
19124040 CTTTTTTTTTTCT
1 CTTTTTTTTTTCT
19124053 -TTTTTT
1 CTTTTTT
19124059 CCTATTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.32
13 7 0.37
14 6 0.32
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
CTTTTTTTTTTCT
Found at i:19124066 original size:19 final size:19
Alignment explanation
Indices: 19124027--19124066 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
19124017 TGACCTCTCC
* *
19124027 TTTTTCTTTTTCTCTTTTT
1 TTTTTCTTTTTCTCCTATT
*
19124046 TTTTTCTTTTTTTCCTATT
1 TTTTTCTTTTTCTCCTATT
19124065 TT
1 TT
19124067 GACTTTGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTCTTTTTCTCCTATT
Found at i:19124094 original size:9 final size:9
Alignment explanation
Indices: 19124070--19124158 Score: 102
Period size: 9 Copynumber: 10.3 Consensus size: 9
19124060 CTATTTTGAC
19124070 TTTGA-TTT
1 TTTGATTTT
19124078 TTTG--TTT
1 TTTGATTTT
19124085 TTTG-TTTT
1 TTTGATTTT
19124093 TTTGATTTT
1 TTTGATTTT
19124102 TTTGATTTT
1 TTTGATTTT
19124111 TTTGATTTTTT
1 TTTGA--TTTT
19124122 TTTGATTTT
1 TTTGATTTT
19124131 TTTGA--TT
1 TTTGATTTT
19124138 TTTGATTTT
1 TTTGATTTT
19124147 TTAT-ATTTT
1 TT-TGATTTT
19124156 TTT
1 TTT
19124159 TTGAGTCTGA
Statistics
Matches: 74, Mismatches: 0, Indels: 14
0.84 0.00 0.16
Matches are distributed among these distances:
7 14 0.19
8 12 0.16
9 38 0.51
10 1 0.01
11 9 0.12
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.80
Consensus pattern (9 bp):
TTTGATTTT
Found at i:19124121 original size:29 final size:27
Alignment explanation
Indices: 19124070--19124148 Score: 103
Period size: 29 Copynumber: 3.0 Consensus size: 27
19124060 CTATTTTGAC
*
19124070 TTTGA-TTTTTTG-TTTTT--TGTTTT
1 TTTGATTTTTTTGATTTTTGATTTTTT
19124093 TTTGATTTTTTTGATTTTTTTGATTTTTT
1 TTTGATTTTTTTGA--TTTTTGATTTTTT
19124122 TTTGATTTTTTTGATTTTTGATTTTTT
1 TTTGATTTTTTTGATTTTTGATTTTTT
19124149 ATATTTTTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
23 5 0.10
24 7 0.14
27 18 0.37
29 19 0.39
ACGTcount: A:0.09, C:0.00, G:0.11, T:0.80
Consensus pattern (27 bp):
TTTGATTTTTTTGATTTTTGATTTTTT
Found at i:19124123 original size:36 final size:36
Alignment explanation
Indices: 19124082--19124162 Score: 121
Period size: 36 Copynumber: 2.2 Consensus size: 36
19124072 TGATTTTTTG
19124082 TTTTTTG-TTTTTTTGATTTTTTTGATTTTTT-TGATTT
1 TTTTTTGATTTTTTTGA--TTTTTGATTTTTTAT-ATTT
19124119 TTTTTTGATTTTTTTGATTTTTGATTTTTTATATTT
1 TTTTTTGATTTTTTTGATTTTTGATTTTTTATATTT
19124155 TTTTTTGA
1 TTTTTTGA
19124163 GTCTGAACTC
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
36 25 0.60
37 8 0.19
38 9 0.21
ACGTcount: A:0.11, C:0.00, G:0.10, T:0.79
Consensus pattern (36 bp):
TTTTTTGATTTTTTTGATTTTTGATTTTTTATATTT
Found at i:19124162 original size:20 final size:20
Alignment explanation
Indices: 19124082--19124140 Score: 97
Period size: 20 Copynumber: 3.1 Consensus size: 20
19124072 TGATTTTTTG
19124082 TTTTTTG-TTTTTTTGA--T
1 TTTTTTGATTTTTTTGATTT
19124099 TTTTTTGATTTTTTTGATTT
1 TTTTTTGATTTTTTTGATTT
19124119 TTTTTTGATTTTTTTGATTT
1 TTTTTTGATTTTTTTGATTT
19124139 TT
1 TT
19124141 GATTTTTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
17 7 0.18
18 9 0.23
20 23 0.59
ACGTcount: A:0.08, C:0.00, G:0.10, T:0.81
Consensus pattern (20 bp):
TTTTTTGATTTTTTTGATTT
Found at i:19131614 original size:44 final size:44
Alignment explanation
Indices: 19131564--19131676 Score: 147
Period size: 44 Copynumber: 2.6 Consensus size: 44
19131554 AATCTGACCT
*
19131564 ACTGCAACTTTA-GAAGTATAGGATTCATCATTTTAATCCGCTCC
1 ACTGCAACTTCAGGAAG-ATAGGATTCATCATTTTAATCCGCTCC
* ** *
19131608 ACTGCAACTTCAGGGAGATAGGATTTGTGATTTTAATCCGCTCC
1 ACTGCAACTTCAGGAAGATAGGATTCATCATTTTAATCCGCTCC
* *
19131652 ATTGCAACTTCAGGGAGATAGGATT
1 ACTGCAACTTCAGGAAGATAGGATT
19131677 TGTGACTCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
44 59 0.95
45 3 0.05
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (44 bp):
ACTGCAACTTCAGGAAGATAGGATTCATCATTTTAATCCGCTCC
Found at i:19131677 original size:44 final size:44
Alignment explanation
Indices: 19131593--19131681 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
19131583 AGGATTCATC
19131593 ATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTTGTG
1 ATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTTGTG
*
19131637 ATTTTAATCCGCTCCATTGCAACTTCAGGGAGATAGGATTTGTG
1 ATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTTGTG
19131681 A
1 A
19131682 CTCTTCGTGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (44 bp):
ATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTTGTG
Found at i:19131967 original size:50 final size:49
Alignment explanation
Indices: 19131904--19132285 Score: 165
Period size: 50 Copynumber: 7.7 Consensus size: 49
19131894 TGCAATTTCA
* * *
19131904 GGAAGTAAGATTCACCGTCGTGGCTTTAATCTATTTACTTGCAATGTCGG
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATCT-TTTACTTGCAATGTCGG
* * * * * * * *
19131954 GGAAATGAGATTCACTGTCGTAGCTTCAATCTGTTCCGCTGCATTGCCTG
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATCTTTTAC-TTGCAATGTCGG
* * * * * * *
19132004 GGAAGTAAGATTCACCATTGTGGCTTCAATCTTTTGAGTTGCGATGTTGG
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATCTTTT-ACTTGCAATGTCGG
* * * * * * *
19132054 GGAAGCGAGATTCACCGTCATAGCTTCAATCTATTCCGCTGC-ATCGCCTG
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATCTTTTAC-TTGCAAT-GTCGG
* * * * * * * *
19132104 GGAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTACAATGTCAG
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATC-TTTTACTTGCAATGTCGG
* * * * * ** * * *
19132154 GGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGCTCCATTGCAACG-CTAG
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATCTTTTAC-TTGCAATGTC-GG
* * * * * * * * *
19132204 GAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAACGTCAG
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATC-TTTTACTTGCAATGTCGG
* * * *
19132254 GGAAGTGAGATCCGCTGTTGTAGCTTCAATCT
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATCT
19132286 GTTCCACTGC
Statistics
Matches: 256, Mismatches: 66, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
49 9 0.04
50 239 0.93
51 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (49 bp):
GGAAGTGAGATTCACCGTCGTAGCTTCAATCTTTTACTTGCAATGTCGG
Found at i:19132015 original size:100 final size:99
Alignment explanation
Indices: 19131904--19133041 Score: 1162
Period size: 100 Copynumber: 11.4 Consensus size: 99
19131894 TGCAATTTCA
* * * * * * * * * *
19131904 GGAAGTAAGATTCACCGTCGTGGCTTTAATCTATTTACTTGCAATGTCGGGGAAATGAGATTCAC
1 GGAAGTAAGATCCGCCGTTGTAGCTTCAATCT-TTTAATTGCAATGTCAGGGAAGTGAGATCCGC
* * **
19131969 TGTCGTAGCTTCAATCTGTTCCGCTGCATTGCCTG
65 TGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTG
* * * * * * ** * * *
19132004 GGAAGTAAGATTCACCATTGTGGCTTCAATCTTTTGAGTTGCGATGTTGGGGAAGCGAGATTCAC
1 GGAAGTAAGATCCGCCGTTGTAGCTTCAATCTTTT-AATTGCAATGTCAGGGAAGTGAGATCCGC
* ** * * *
19132069 CGTCATAGCTTCAATCTATTCCGCTGCATCGCCTG
65 TGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTG
* * *
19132104 GGAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTACAATGTCAGGGAAGTAAGATCCGC
1 GGAAGTAAGATCCGCCGTTGTAGCTTCAATC-TTTTAATTGCAATGTCAGGGAAGTGAGATCCGC
* * *
19132169 TGTTGTAGCTTCAATCTGCTCCATTGCAACG-CTAG
65 TGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT-G
* * *
19132204 GAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAACGTCAGGGAAGTGAGATCCGC
1 GGAAGTAAGATCCGCCGTTGTAGCTTCAATC-TTTTAATTGCAATGTCAGGGAAGTGAGATCCGC
*
19132269 TGTTGTAGCTTCAATCTGTTCCACTGCACCACCT-
65 TGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTG
* * * * * * *
19132303 AGAAATAAGATTCGCCGTTGTGGCCTCAATCTTTTGATTGCAATGTCAGGGAAGTGAGATCCGCC
1 GGAAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTAATTGCAATGTCAGGGAAGTGAGATCCGCT
* * * *
19132368 GTTGTAGCTTCAATCTGTTCCGCTACACTG-ATAG
66 GTTGTAGCTTCAATCTGTTCCACTGCACCGCCT-G
* * * * * *
19132402 GAAAGTAAGATCCACTGTTGTAGCTTCCATCTTCTTAATTGTAATGTCAGGGAAGTAAGATCCGC
1 GGAAGTAAGATCCGCCGTTGTAGCTTCAATCTT-TTAATTGCAATGTCAGGGAAGTGAGATCCGC
**
19132467 TGTTGTAGCTTCAATCTGTTCCACTGCAATG-CTAG
65 TGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT-G
* * * *
19132502 GAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGTAATGTCAGGGAAGTAAGATCCGC
1 GGAAGTAAGATCCGCCGTTGTAGCTTCAATCTT-TTAATTGCAATGTCAGGGAAGTGAGATCCGC
19132567 TGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT-
65 TGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTG
* * * * * *
19132601 GGAAATAAGATTCACCGTTGTGGCCTCAATC-TTTAGATTGCAATGTCAGGGAAGTGAGATCTGC
1 GGAAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTA-ATTGCAATGTCAGGGAAGTGAGATCCGC
* **
19132665 CGTTGTAGCTTCAATCTGTTCCGTTGCACCG-CTAG
65 TGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT-G
* * * * * *
19132700 GAAAGTAAGATCCGCTGTTGTAGCTTCCATCTTCTTAATTGCAATGTTAGGGAAGTAAGATCCGA
1 GGAAGTAAGATCCGCCGTTGTAGCTTCAATCTT-TTAATTGCAATGTCAGGGAAGTGAGATCCGC
*
19132765 TGTTGTAGCTTCAATCTGTTCCACTGCACCACCT-
65 TGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTG
* * * * * * * *
19132799 AGAAATAAGATTCGCCGTTGTGGCCTCAATCTTTTGATTGCAATGTCAGGGAAGTGAGATTCGCC
1 GGAAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTAATTGCAATGTCAGGGAAGTGAGATCCGCT
* * * *
19132864 GTTGTAGCTTCAATCTATTCCGCTTCACC-ACTAG
66 GTTGTAGCTTCAATCTGTTCCACTGCACCGCCT-G
* * * *
19132898 GAAAGTAAGATCCGCTGTTGTAGCTTCCATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGC
1 GGAAGTAAGATCCGCCGTTGTAGCTTCAATCTT-TTAATTGCAATGTCAGGGAAGTGAGATCCGC
**
19132963 TGTTGTAGCTTCAATCTGTTCCACTGCAATG-CTAG
65 TGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT-G
* *
19132998 GAAAGTAAGATCCGCTGTTGTAGCTTCAATCATTTTAATTGCAA
1 GGAAGTAAGATCCGCCGTTGTAGCTTCAATC-TTTTAATTGCAA
19133042 ACTATGGTTT
Statistics
Matches: 876, Mismatches: 143, Indels: 38
0.83 0.14 0.04
Matches are distributed among these distances:
97 8 0.01
98 163 0.19
99 150 0.17
100 540 0.62
101 15 0.02
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (99 bp):
GGAAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTAATTGCAATGTCAGGGAAGTGAGATCCGCT
GTTGTAGCTTCAATCTGTTCCACTGCACCGCCTG
Found at i:19132422 original size:50 final size:49
Alignment explanation
Indices: 19132106--19133028 Score: 751
Period size: 50 Copynumber: 18.6 Consensus size: 49
19132096 ATCGCCTGGG
* ** * *
19132106 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTACAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAATGT-AGGA
* *
19132156 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGCTCCATTGCAACGCTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAATG-TAGGA
* ** * *
19132206 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAACGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAATGT-AGGA
* * **
19132256 AAGTGAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCACCTA-GA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCA--ATGTAGGA
* * * * ** *
19132306 AA-TAAGATTCGCCGTTGTGGCCTCAATCT-TTTGATTGCAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAATGT-AGGA
* * ** * *
19132354 AAGTGAGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTACACTGATAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAATG-TAGGA
* * ** * *
19132404 AAGTAAGATCCACTGTTGTAGCTTCCATCT-TCTTAATTGTAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCCATTGCAATGT-AGGA
*
19132454 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAATGCTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAATG-TAGGA
** * *
19132504 AAGTAAGATCCGCTGTTGTAGCTTCAATCT-TCTTAATTGTAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCCATTGCAATGT-AGGA
* **
19132554 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT-GGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAATG--TAGGA
* * * * * ** *
19132604 AA-TAAGATTCACCGTTGTGGCCTCAATCT-TTAGATTGCAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAATGT-AGGA
* * * * **
19132652 AAGTGAGATCTGCCGTTGTAGCTTCAATCTGTTCCGTTGCACCGCTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAATG-TAGGA
* ** *
19132702 AAGTAAGATCCGCTGTTGTAGCTTCCATCT-TCTTAATTGCAATGTTAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCCATTGCAATG-TAGGA
* * **
19132752 AAGTAAGATCCGATGTTGTAGCTTCAATCTGTTCCACTGCACCACCTA-GA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCA--ATGTAGGA
* * * * ** *
19132802 AA-TAAGATTCGCCGTTGTGGCCTCAATCT-TTTGATTGCAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAATGT-AGGA
* * * * * *
19132850 AAGTGAGATTCGCCGTTGTAGCTTCAATCTATTCCGCTT-CACCA-CTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCC-ATTGCA--ATGTAGGA
* ** *
19132900 AAGTAAGATCCGCTGTTGTAGCTTCCATCT-TCTTAATTGCAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCCATTGCAATGT-AGGA
*
19132950 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAATGCTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAATG-TAGGA
19133000 AAGTAAGATCCGCTGTTGTAGCTTCAATC
1 AAGTAAGATCCGCTGTTGTAGCTTCAATC
19133029 ATTTTAATTG
Statistics
Matches: 686, Mismatches: 147, Indels: 80
0.75 0.16 0.09
Matches are distributed among these distances:
46 5 0.01
47 2 0.00
48 33 0.05
49 144 0.21
50 481 0.70
51 15 0.02
52 6 0.01
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (49 bp):
AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAATGTAGGA
Found at i:19132450 original size:298 final size:298
Alignment explanation
Indices: 19131926--19133041 Score: 1447
Period size: 298 Copynumber: 3.7 Consensus size: 298
19131916 CACCGTCGTG
* * * * * * * *
19131926 GCTTTAATCTATTTACTTGCAATGTCGGGGAAATGAGATTCACTGTCGTAGCTTCAATCTGTTCC
1 GCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTGAGATCCGCTGTTGTAGCTTCAATCTGTTCC
* *** * * * * * **
19131991 GCTGCATTGCCTGGGAAGTAAGATTCACCATTGTGGCTTCAATCTTTTGAGTTGCGATGTTGGGG
66 ACTGCACCACCT-AGAAATAAGATTCACCGTTGTGGCCTCAATCTTTTGA-TTGCAATGTCAGGG
* * * ** * *
19132056 AAGCGAGATTCACCGTCATAGCTTCAATCTATTCCGCTGCA-TCGCCT-GGGAAGTAAGATCCGC
129 AAGTGAGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACT-G-CTAGGAAAGTAAGATCCGC
* *
19132119 TGTTGTAGCTTCAATCTTTTTAATTACAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAAT
192 TGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAAT
* *
19132184 CTGCTCCATTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTA
257 CTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTA
*
19132226 GCTTCAATCTTTTTAATTGCAACGTCAGGGAAGTGAGATCCGCTGTTGTAGCTTCAATCTGTTCC
1 GCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTGAGATCCGCTGTTGTAGCTTCAATCTGTTCC
*
19132291 ACTGCACCACCTAGAAATAAGATTCGCCGTTGTGGCCTCAATCTTTTGATTGCAATGTCAGGGAA
66 ACTGCACCACCTAGAAATAAGATTCACCGTTGTGGCCTCAATCTTTTGATTGCAATGTCAGGGAA
* * *
19132356 GTGAGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTACACTGATAGGAAAGTAAGATCCACTGTT
131 GTGAGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCTAGGAAAGTAAGATCCGCTGTT
* *
19132421 GTAGCTTCCATCTTCTTAATTGTAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGT
196 GTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGT
*
19132486 TCCACTGCAATGCTAGGAAAGTAAGATCCGCTGTTGTA
261 TCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTA
* * *
19132524 GCTTCAATCTTCTTAATTGTAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCC
1 GCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTGAGATCCGCTGTTGTAGCTTCAATCTGTTCC
* * *
19132589 ACTGCACCGCCTGGAAATAAGATTCACCGTTGTGGCCTCAATCTTTAGATTGCAATGTCAGGGAA
66 ACTGCACCACCTAGAAATAAGATTCACCGTTGTGGCCTCAATCTTTTGATTGCAATGTCAGGGAA
* * *
19132654 GTGAGATCTGCCGTTGTAGCTTCAATCTGTTCCGTTGCACCGCTAGGAAAGTAAGATCCGCTGTT
131 GTGAGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCTAGGAAAGTAAGATCCGCTGTT
* * *
19132719 GTAGCTTCCATCTTCTTAATTGCAATGTTAGGGAAGTAAGATCCGATGTTGTAGCTTCAATCTGT
196 GTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGT
* * *
19132784 TCCACTGCACCAC-CTA-GAAA-TAAGATTCGCCGTTGTG
261 TCCACTGCA--ACGCTAGGAAAGTAAGATCCGCTGTTGTA
* * * * *
19132821 GCCTCAATC-TTTTGATTGCAATGTCAGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTATTCC
1 GCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTGAGATCCGCTGTTGTAGCTTCAATCTGTTCC
* * * * * * * * *
19132885 GCTTCACCA-CTAGGAAAGTAAGATCCGCTGTTGTAGCTTCCATCTTCTTAATTGCAATGTCAGG
66 ACTGCACCACCTA-GAAA-TAAGATTCACCGTTGTGGCCTCAATCTT-TTGATTGCAATGTCAGG
* * * *
19132949 GAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAATGCTAGGAAAGTAAGATCCGCT
128 GAAGTGAGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCTAGGAAAGTAAGATCCGCT
19133014 GTTGTAGCTTCAATCATT-TTAATTGCAA
193 GTTGTAGCTTCAATC-TTCTTAATTGCAA
19133042 ACTATGGTTT
Statistics
Matches: 721, Mismatches: 87, Indels: 18
0.87 0.11 0.02
Matches are distributed among these distances:
295 2 0.00
296 58 0.08
297 45 0.06
298 513 0.71
299 38 0.05
300 65 0.09
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.32
Consensus pattern (298 bp):
GCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTGAGATCCGCTGTTGTAGCTTCAATCTGTTCC
ACTGCACCACCTAGAAATAAGATTCACCGTTGTGGCCTCAATCTTTTGATTGCAATGTCAGGGAA
GTGAGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCTAGGAAAGTAAGATCCGCTGTT
GTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGT
TCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTA
Found at i:19133127 original size:44 final size:44
Alignment explanation
Indices: 19133046--19133220 Score: 133
Period size: 44 Copynumber: 4.0 Consensus size: 44
19133036 TTGCAAACTA
* * * *
19133046 TGGTTTCTTCGATCTGCTTCGCTGT-TAGTACAAGAAGGCAAGAC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAAG-GCAGGAAGGCAAGAC
19133090 TGGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGA-C
* * * * * * * * * **
19133135 TGTTGTCTTCAACCAGCTCCACT-ACAA--CCGAGAGAGGTAAGGT
1 TGGTGTCTTCGATCTGCTTCGCTGTCAAGGCAG-GA-AGGCAAGAC
* *
19133178 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGA
1 TGGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGA
19133221 TCTTTAACTT
Statistics
Matches: 98, Mismatches: 26, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
42 2 0.02
43 18 0.18
44 54 0.55
45 22 0.22
46 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (44 bp):
TGGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGAC
Found at i:19135668 original size:12 final size:11
Alignment explanation
Indices: 19135650--19135680 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
19135640 GTTTTTCGAA
19135650 TTTTTTTTGTT
1 TTTTTTTTGTT
19135661 TTTGTTTTTGTT
1 TTT-TTTTTGTT
19135673 TTTTTTTT
1 TTTTTTTT
19135681 AATCTGAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (11 bp):
TTTTTTTTGTT
Found at i:19140036 original size:12 final size:11
Alignment explanation
Indices: 19140009--19140042 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
19139999 ATACGTTATT
19140009 TAAAAATAAAA
1 TAAAAATAAAA
*
19140020 GAAAAATACAAA
1 TAAAAATA-AAA
19140032 TAAAAATAAAA
1 TAAAAATAAAA
19140043 AAATCGAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:19148218 original size:132 final size:133
Alignment explanation
Indices: 19147948--19148204 Score: 299
Period size: 132 Copynumber: 2.0 Consensus size: 133
19147938 CTTTTCTAAA
* * * *
19147948 AAAAAAACACTTC-TTTAGCTTATCAATTTAACAACTCTTTTAACCATAATTTCCCCCCCCCCCC
1 AAAAAAATAGTTCTTTTAGCTTATCAATTTAACAACTCTTTTAACAATAATTCCCCCCCCCCCCC
* * * **
19148012 AACAAACAAAAGAACACTTCTTTAGCTTCTTAATTTCACAAATCTTCTAATTATAATTTCAACCA
66 AACAAACAAAAGAACACTTATTTACCTTCTCAATTTCACAAATCTTCTAACCATAATTTCAACCA
19148077 CCT
131 CCT
* * *
19148080 AAAAAAATAGTTCTTTTA-CTTTTCAATTTCACAACTTTTTTAACAATAATTCCCCCCCCCCCCC
1 AAAAAAATAGTTCTTTTAGCTTATCAATTTAACAACTCTTTTAACAATAATTCCCCCCCCCCCCC
* * * * * *
19148144 AA-AAA-AAAA-AACGTCATTATTTCCCTTCTCAATTTCACAACTCTTTTGACCATAGTTTCAA
66 AACAAACAAAAGAAC-AC-TTATTTACCTTCTCAATTTCACAAATCTTCTAACCATAATTTCAA
19148205 TCCCCTCCCA
Statistics
Matches: 104, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
129 3 0.03
130 5 0.05
131 38 0.37
132 54 0.52
133 4 0.04
ACGTcount: A:0.35, C:0.28, G:0.03, T:0.34
Consensus pattern (133 bp):
AAAAAAATAGTTCTTTTAGCTTATCAATTTAACAACTCTTTTAACAATAATTCCCCCCCCCCCCC
AACAAACAAAAGAACACTTATTTACCTTCTCAATTTCACAAATCTTCTAACCATAATTTCAACCA
CCT
Found at i:19148267 original size:68 final size:69
Alignment explanation
Indices: 19148136--19148269 Score: 153
Period size: 68 Copynumber: 1.9 Consensus size: 69
19148126 TAATTCCCCC
* ** ** * * *
19148136 CCCCCCCCAAAAAAAAAAACGTCATTATTTCCCTTCTCAATTTCACAACTCTTTTGACCATAGTT
1 CCCCCCCCAAAAAAAAAAACAT-ATTATTTAACTTCTCAATTTCACAAAACTTCTAACAATAGTT
19148201 TCAAT
65 TCAAT
* * *
19148206 CCCCTCCCAAAAAAAAAAACAT-TTATTTAACTTCTTAATTTCATAAAACTTCTAACAATAGTTT
1 CCCCCCCCAAAAAAAAAAACATATTATTTAACTTCTCAATTTCACAAAACTTCTAACAATAGTTT
19148270 TAACCCAAAA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
68 33 0.62
70 20 0.38
ACGTcount: A:0.37, C:0.27, G:0.03, T:0.33
Consensus pattern (69 bp):
CCCCCCCCAAAAAAAAAAACATATTATTTAACTTCTCAATTTCACAAAACTTCTAACAATAGTTT
CAAT
Found at i:19148442 original size:122 final size:121
Alignment explanation
Indices: 19148236--19148517 Score: 351
Period size: 122 Copynumber: 2.3 Consensus size: 121
19148226 ATTTATTTAA
* * * * * **
19148236 CTTCTTAATTTCATAAAACTTCTAACAATAGTTTTAA--CCCAAAAAATTAGTTCTTTTGCTTCT
1 CTTCTTAATTTCACAAATCTTCTAATAATAGTTTCAACCCCCAAAAAATCACATCTTTTGCTTCT
* * * *
19148299 CAATTTCATAACTTTTTTAACCATAGTTTCA-ACAAAAAAAAAAAAACAACTTC-AG
66 CAATTTCATAAATCTTCTAACCATAGTTTCACAAAAAAAAAAAAAAAC-ACTTCTAG
*
19148354 CTTCTTAATTTGACAAATCTTCTAATAATAGTTTCAACCCCCTAAAAAAATCACATCTTTTGCTT
1 CTTCTTAATTTCACAAATCTTCTAATAATAGTTTCAACCCCC--AAAAAATCACATCTTTTGCTT
19148419 CTCAATTTCATAAATCTTCTAACCATAGTTTCACAAAAAAAAAAAAAAACACTTCTTTAG
64 CTCAATTTCATAAATCTTCTAACCATAGTTTCACAAAAAAAAAAAAAAACACTTC--TAG
19148479 CTTCTTAATTTCACAAAT-TCTCTAACT-ATAGTTTCAACC
1 CTTCTTAATTTCACAAATCT-TCTAA-TAATAGTTTCAACC
19148518 ACCACCCCAA
Statistics
Matches: 141, Mismatches: 13, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
118 32 0.23
120 3 0.02
122 53 0.38
123 15 0.11
124 1 0.01
125 36 0.26
126 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.36
Consensus pattern (121 bp):
CTTCTTAATTTCACAAATCTTCTAATAATAGTTTCAACCCCCAAAAAATCACATCTTTTGCTTCT
CAATTTCATAAATCTTCTAACCATAGTTTCACAAAAAAAAAAAAAAACACTTCTAG
Found at i:19148503 original size:63 final size:62
Alignment explanation
Indices: 19148286--19148516 Score: 218
Period size: 63 Copynumber: 3.7 Consensus size: 62
19148276 AAAAAATTAG
* * * * *
19148286 TTCTTTTGCTTCTCAATTTCATAACTTTTTTAACCATAGTTTCAACAAAAAAAAAAAAACAAC
1 TTCTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTCAACAAAAAAAAAAAAAC-AC
* * ** ***** *
19148349 TTC---AGCTTCTTAATTTGACAAATCTTCTAATAATAGTTTCAACCCCCTAAAAAAATCAC
1 TTCTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTCAACAAAAAAAAAAAAACAC
* * * *
19148408 ATCTTTTGCTTCTCAATTTCATAAATCTTCTAACCATAGTTTCACAAAAAAAAAAAAAAACAC
1 TTCTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTCA-ACAAAAAAAAAAAAACAC
* *
19148471 TTCTTTAGCTTCTTAATTTCACAAAT-TCTCTAACTATAGTTTCAAC
1 TTCTTTAGCTTCTCAATTTCACAAATCT-TCTAACCATAGTTTCAAC
19148517 CACCACCCCA
Statistics
Matches: 128, Mismatches: 35, Indels: 11
0.74 0.20 0.06
Matches are distributed among these distances:
59 4 0.03
60 39 0.30
62 34 0.27
63 51 0.40
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.36
Consensus pattern (62 bp):
TTCTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTCAACAAAAAAAAAAAAACAC
Found at i:19148721 original size:66 final size:62
Alignment explanation
Indices: 19148651--19148802 Score: 160
Period size: 67 Copynumber: 2.4 Consensus size: 62
19148641 TCTTAAAAAA
* * * *
19148651 AAAAAAAAACTTCTTTAGCTTTTCAATTTAACAAGTCTTTCAAACAATAGTTTCAATCTTTCTCC
1 AAAAAAAAACTTCTTTAGCTTTTAAATTTAACAAATC-TTCAAACAATAGTTTCAA-C--CCTAC
19148716 T
62 T
* * * * * *
19148717 AAAAAACATACTTTTTTAGCTTCTAAATTTCAGAAATCTTCTAACAATAGTTTCAACCCTACT
1 AAAAAA-AAACTTCTTTAGCTTTTAAATTTAACAAATCTTCAAACAATAGTTTCAACCCTACT
*
19148780 AAAAAAACACTTCTTTAGCTTTT
1 AAAAAAAAACTTCTTTAGCTTTT
19148803 TTAGTAGTGA
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
62 14 0.19
63 10 0.14
65 1 0.01
66 23 0.32
67 24 0.33
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.38
Consensus pattern (62 bp):
AAAAAAAAACTTCTTTAGCTTTTAAATTTAACAAATCTTCAAACAATAGTTTCAACCCTACT
Found at i:19148838 original size:23 final size:23
Alignment explanation
Indices: 19148812--19148856 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
19148802 TTTAGTAGTG
* * *
19148812 AAATCTTCTAACCATAGTTTCAA
1 AAATATTCTAAACATAATTTCAA
19148835 AAATATTCTAAACATAATTTCA
1 AAATATTCTAAACATAATTTCA
19148857 CCAAAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.44, C:0.18, G:0.02, T:0.36
Consensus pattern (23 bp):
AAATATTCTAAACATAATTTCAA
Found at i:19149163 original size:57 final size:57
Alignment explanation
Indices: 19149096--19149244 Score: 147
Period size: 60 Copynumber: 2.5 Consensus size: 57
19149086 ATTTCTTCAA
* * * *
19149096 CTTCTTAATTTAATAAATCTTCTAACTATAGT-ACCCCAAAAAAATACAGTTCTTTAG
1 CTTCTTAATTTAA-AAATCTTCTAACCATAGTCACCCAAAAAAAAAACAATTCTTTAG
* * * * * *
19149153 TTTCTCAATTTTACAACTCTTTTAACCATAGTTTCACCCAAAAAAAAAATAATTCTTTAG
1 CTTCTTAA-TTTAAAAATCTTCTAACCATAG--TCACCCAAAAAAAAAACAATTCTTTAG
*
19149213 CTTCTTAATTTCAAAAATTTTCTAACCATAGT
1 CTTCTTAATTT-AAAAATCTTCTAACCATAGT
19149245 GTCAACCCCC
Statistics
Matches: 71, Mismatches: 16, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
57 20 0.28
58 5 0.07
59 4 0.06
60 42 0.59
ACGTcount: A:0.38, C:0.19, G:0.04, T:0.39
Consensus pattern (57 bp):
CTTCTTAATTTAAAAATCTTCTAACCATAGTCACCCAAAAAAAAAACAATTCTTTAG
Found at i:19149475 original size:71 final size:71
Alignment explanation
Indices: 19149382--19149645 Score: 308
Period size: 71 Copynumber: 3.8 Consensus size: 71
19149372 TTCAACCCCT
* * * * * *
19149382 AAAAAAACAGTTATTTATCTTCTCAATTTCATAACTCTTTTAACCATAGTTTCAACCCTTCCCCC
1 AAAAAAACACTTCTTTAGCTTCTTAATTTCATAAATCTTCTAACCATAGTTTCAACCCTTCCCCC
19149447 TACCAC
66 TACCAC
* * * * *
19149453 AAAAAAATACTTCTTTAGCTTCTTATTTTCACAACTCTTTTAACCATAGTTTCAACCCTTCCCCC
1 AAAAAAACACTTCTTTAGCTTCTTAATTTCATAAATCTTCTAACCATAGTTTCAACCCTTCCCCC
19149518 -ACCA-
66 TACCAC
* * * *
19149522 AAAAAAACACTTTTTTAGCTTCTAAATTTCAAAAATCTTCTAACCATAGTTTCAA-AC--CCCCC
1 AAAAAAACACTTCTTTAGCTTCTTAATTTCATAAATCTTCTAACCATAGTTTCAACCCTTCCCCC
19149584 T--CAC
66 TACCAC
* ** *
19149588 AAAAAAACACTTCTTTAGCTTCTTAATTTTATAAATCTTCTAATTATAGTTTTAACCC
1 AAAAAAACACTTCTTTAGCTTCTTAATTTCATAAATCTTCTAACCATAGTTTCAACCC
19149646 ACACAAAAAA
Statistics
Matches: 167, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
65 2 0.01
66 53 0.32
67 1 0.01
68 1 0.01
69 48 0.29
70 4 0.02
71 58 0.35
ACGTcount: A:0.34, C:0.27, G:0.03, T:0.36
Consensus pattern (71 bp):
AAAAAAACACTTCTTTAGCTTCTTAATTTCATAAATCTTCTAACCATAGTTTCAACCCTTCCCCC
TACCAC
Found at i:19149566 original size:69 final size:66
Alignment explanation
Indices: 19149132--19149713 Score: 414
Period size: 61 Copynumber: 9.0 Consensus size: 66
19149122 TATAGTACCC
* * * * *
19149132 CAAAAAAATACAGTTCTTTAGTTTCTCAATTTTACAACTCTTTTAACCATAGTTTC-A-----CC
1 CAAAAAAA-ACACTTCTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTCAACCCCCCC
19149191 CA
65 CA
* * * * * * *
19149193 AAAAAAAAATAATTCTTTAGCTTCTTAATTTCAAAAATTTTCTAACCATAGTGTCAA---CCCCC
1 CAAAAAAAACACTTCTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTCAACCCCCCCC
19149255 -
66 A
* * * * * * *
19149255 C-TAAAAAAGAGTTAC-TTATCTTCTCAATTTCACAACTCTTTTAACCATAGTTTCAACCCTCCC
1 CAAAAAAAACACTT-CTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTCAACCCCCCC
19149318 CA
65 CA
* * * * *
19149320 C-AAAGAAACAATTCTTTAGATTCTTAATTTCACAAAATCTTCTAACCATGGTTTCAA-----CC
1 CAAAAAAAACACTTCTTTAGCTTCTCAATTTCAC-AAATCTTCTAACCATAGTTTCAACCCCCCC
19149379 C-
65 CA
* * * * * * *
19149380 CTAAAAAAACAGTTATTTATCTTCTCAATTTCATAACTCTTTTAACCATAGTTTCAACCCTTCCC
1 CAAAAAAAACACTTCTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTCAACCC--CCC
19149445 CCTA
64 CC-A
* * * * *
19149449 CCACAAAAAAATACTTCTTTAGCTTCTTATTTTCACAACTCTTTTAACCATAGTTTCAACCCTTC
1 -CA-AAAAAAACACTTCTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTCAACCC--C
19149514 CCCCA
62 CCCCA
* * *
19149519 CCAAAAAAAACACTTTTTTAGCTTCTAAATTTCAAAAATCTTCTAACCATAGTTTCAAACCCCCC
1 -CAAAAAAAACACTTCTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTC-AACCCCCC
*
19149584 TCA
64 CCA
* * * ** * * *
19149587 C-AAAAAAACACTTCTTTAGCTTCTTAATTTTATAAATCTTCTAATTATAGTTTTAA-CCCACAC
1 CAAAAAAAACACTTCTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTCAACCCCCCCC
19149650 A
66 A
* * * * * * *
19149651 AAAAAAAAACACTTTTTTACCTTCTCAATTCCACTAGTCTTCTAACCATAGTTTCAACTCCCC
1 CAAAAAAAACACTTCTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTCAACCCCCC
19149714 TAAAAAACAC
Statistics
Matches: 414, Mismatches: 82, Indels: 45
0.77 0.15 0.08
Matches are distributed among these distances:
60 58 0.14
61 79 0.19
62 1 0.00
63 3 0.01
64 11 0.03
65 70 0.17
66 69 0.17
67 4 0.01
68 5 0.01
69 46 0.11
70 10 0.02
71 58 0.14
ACGTcount: A:0.35, C:0.26, G:0.04, T:0.35
Consensus pattern (66 bp):
CAAAAAAAACACTTCTTTAGCTTCTCAATTTCACAAATCTTCTAACCATAGTTTCAACCCCCCCC
A
Found at i:19149692 original size:65 final size:65
Alignment explanation
Indices: 19149192--19149720 Score: 237
Period size: 65 Copynumber: 8.1 Consensus size: 65
19149182 AGTTTCACCC
* * * * * * * *
19149192 AAAAAAAAAATAATTCTTTAGCTTCTTAATTTCAAAAATTTTCTAACCATAGTGTC-AACCCCCC
1 AAAAAAAAAACACTTTTTTAGCTTCTAAATTTC-ATAATCTTCTAACCATAGTTTCAAACCCCAC
19149256 T
65 T
* * ** * * * *
19149257 ----AAAAAAGAGTTACTTATCTTCTCAATTTCACAACTCTTTTAACCATAGTTTC-AACCCTC-
1 AAAAAAAAAACACTTTTTTAGCTTCTAAATTTCATAA-TCTTCTAACCATAGTTTCAAACCC-CA
*
19149316 CC
64 CT
* * * * * * * * *
19149318 CACAAAGAAACAATTCTTTAGATTCTTAATTTCACAAAATCTTCTAACCATGGTTTC-AA-CCC-
1 AAAAAAAAAACACTTTTTTAGCTTCTAAATTT--CATAATCTTCTAACCATAGTTTCAAACCCCA
19149380 CT
64 CT
* * * * * *
19149382 ---AAAAAAACAGTTATTTATCTTCTCAATTTCATAACTCTTTTAACCATAGTTTCAACCCTTCC
1 AAAAAAAAAACACTTTTTTAGCTTCTAAATTTCATAA-TCTTCTAACCATAGTTTCAA-AC--CC
*
19149444 CCCT
62 CACT
* * * * * * * *
19149448 ACCACAAAAAAATACTTCTTTAGCTTCTTATTTTCACAACTCTTTTAACCATAGTTTCAACCCTT
1 A--AAAAAAAAACACTTTTTTAGCTTCTAAATTTCATAA-TCTTCTAACCATAGTTTCAAACC--
* *
19149513 CCCCC
61 CCACT
* * *
19149518 ACCAAAAAAAACACTTTTTTAGCTTCTAAATTTCAAAAATCTTCTAACCATAGTTTCAAACCCCC
1 A-AAAAAAAAACACTTTTTTAGCTTCTAAATTTC-ATAATCTTCTAACCATAGTTTCAAACCCCA
19149583 CT
64 CT
* * * * * ** *
19149585 CACAAAAAAACACTTCTTTAGCTTCTTAATTTTATAAATCTTCTAATTATAGTTT-TAACCCACA
1 AAAAAAAAAACACTTTTTTAGCTTCTAAATTTCAT-AATCTTCTAACCATAGTTTCAAACCC-CA
19149649 C-
64 CT
* * * *
19149650 AAAAAAAAAACACTTTTTTACCTTCTCAATTCCACTAGTCTTCTAACCATAGTTTC-AACTCCC-
1 AAAAAAAAAACACTTTTTTAGCTTCTAAATTTCA-TAATCTTCTAACCATAGTTTCAAAC-CCCA
19149713 CT
64 CT
19149715 AAAAAA
1 AAAAAA
19149721 CACCTCTTTA
Statistics
Matches: 363, Mismatches: 72, Indels: 58
0.74 0.15 0.12
Matches are distributed among these distances:
59 4 0.01
60 19 0.05
61 68 0.19
62 1 0.00
64 3 0.01
65 84 0.23
66 69 0.19
67 8 0.02
68 1 0.00
69 48 0.13
70 10 0.03
71 48 0.13
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (65 bp):
AAAAAAAAAACACTTTTTTAGCTTCTAAATTTCATAATCTTCTAACCATAGTTTCAAACCCCACT
Found at i:19149703 original size:131 final size:127
Alignment explanation
Indices: 19149096--19149740 Score: 493
Period size: 126 Copynumber: 5.1 Consensus size: 127
19149086 ATTTCTTCAA
* * * * **
19149096 CTTCTTAA-TTTAATAAATCTTCTAACTATAG--T--A-CCCCAAAAAAATACAGTTCTTTAGTT
1 CTTCTTAATTTTAA-AAATCTTCTAACCATAGTTTCAACCCCCAAAAAAAAACACTTTTTTACCT
* * * * * *
19149155 TCTCAATTTTACAACTCTTTTAACCATAGTTTC-A---CCC-AAAAAAAAAATAATTCTTTAG
65 TCTCAATTTCACAACTCTTCTAACCATAGTTTCAACCCCCCTCACAAAAAAACACTTCTTTAG
* * * ** * * ** *
19149213 CTTCTTAATTTCAAAAATTTTCTAACCATAGTGTCAACCCCC-CTAAAAAAGAGTTACTTATCTT
1 CTTCTTAATTTTAAAAATCTTCTAACCATAGTTTCAACCCCCAAAAAAAAACACTTTTTTACCTT
* * *
19149277 CTCAATTTCACAACTCTTTTAACCATAGTTTCAACCCTCCC-CACAAAGAAACAATTCTTTAG
66 CTCAATTTCACAACTCTTCTAACCATAGTTTCAACCC-CCCTCACAAAAAAACACTTCTTTAG
* * * * * * *
19149339 ATTCTTAATTTCACAAAATCTTCTAACCATGGTTTCAA-CCCC-TAAAAAAACAGTTATTTATCT
1 CTTCTTAATTTTA-AAAATCTTCTAACCATAGTTTCAACCCCCAAAAAAAAACACTTTTTTACCT
* * *
19149402 TCTCAATTTCATAACTCTTTTAACCATAGTTTCAACCCTTCCCCCTACCACAAAAAAATACTTCT
65 TCTCAATTTCACAACTCTTCTAACCATAGTTTCAA--C--CCCCCT--CACAAAAAAACACTTCT
19149467 TTAG
124 TTAG
* * *
19149471 CTTCTT-ATTTTCACAACTCTTTTAACCATAGTTTCAACCCTTCCCCCACCAAAAAAAACACTTT
1 CTTCTTAATTTT-AAAAATCTTCTAACCATAGTTTCAA-----CCCCCA--AAAAAAAACACTTT
* * * *
19149535 TTTAGCTTCTAAATTTCAAAAATCTTCTAACCATAGTTTCAAACCCCCCTCACAAAAAAACACTT
58 TTTACCTTCTCAATTTCACAACTCTTCTAACCATAGTTTC-AACCCCCCTCACAAAAAAACACTT
19149600 CTTTAG
122 CTTTAG
* ** *
19149606 CTTCTTAATTTTATAAATCTTCTAATTATAGTTTTAACCCACACAAAAAAAAAACACTTTTTTAC
1 CTTCTTAATTTTAAAAATCTTCTAACCATAGTTTCAACCC-C-C-AAAAAAAAACACTTTTTTAC
* * * * * *
19149671 CTTCTCAATTCCACTAGTCTTCTAACCATAGTTTCAACTCCCCT----AAAAAACACCTCTTTAA
63 CTTCTCAATTTCACAACTCTTCTAACCATAGTTTCAACCCCCCTCACAAAAAAACACTTCTTTAG
19149732 CTTCTTAAT
1 CTTCTTAAT
19149741 GATGTAGTCA
Statistics
Matches: 436, Mismatches: 58, Indels: 59
0.79 0.10 0.11
Matches are distributed among these distances:
117 23 0.05
118 4 0.01
119 1 0.00
121 46 0.11
122 5 0.01
126 111 0.25
127 21 0.05
128 1 0.00
129 3 0.01
130 13 0.03
131 73 0.17
132 25 0.06
133 1 0.00
135 45 0.10
136 5 0.01
137 10 0.02
139 1 0.00
140 46 0.11
141 2 0.00
ACGTcount: A:0.35, C:0.26, G:0.04, T:0.36
Consensus pattern (127 bp):
CTTCTTAATTTTAAAAATCTTCTAACCATAGTTTCAACCCCCAAAAAAAAACACTTTTTTACCTT
CTCAATTTCACAACTCTTCTAACCATAGTTTCAACCCCCCTCACAAAAAAACACTTCTTTAG
Found at i:19149705 original size:200 final size:193
Alignment explanation
Indices: 19149129--19149708 Score: 493
Period size: 200 Copynumber: 3.0 Consensus size: 193
19149119 AACTATAGTA
* * * * * *
19149129 CCCCA-AAAAAATACAGTTCTTTAGTTTCTCAATTTTAC-AACTCTTTTAACCATAGTTTC-ACC
1 CCCCACAAAAAA-ACAATTCTTTAGATTCTAAATTTCACAAAATCTTCTAACCATAGTTTCAACC
** * * * * * * *
19149191 CAAAAAAAAAATAATTCTTTAGCTTCTTAATTTCAAAAATTTTCTAACCATAGTGTCAACCCC-C
65 C-CTAAAAAAACACTTATTTAGCTTCTCAATTTCATAAATCTTCTAACCATAGTTTCAACCCCAC
* * * *
19149255 --C---TAAAAAAGAGTTAC-TTATCTTCTCAATTTCACAACTCTTTTAACCATAGTTTCAACCC
129 TACAAAAAAAAAACACTT-CTTTACCTTCTCAATTTCACAACTCTTTTAACCATAGTTTCAACCC
19149314 T
193 T
* * *
19149315 CCCCACAAAGAAACAATTCTTTAGATTCTTAATTTCACAAAATCTTCTAACCATGGTTTCAACCC
1 CCCCACAAAAAAACAATTCTTTAGATTCTAAATTTCACAAAATCTTCTAACCATAGTTTCAACCC
* * * *
19149380 CTAAAAAAACAGTTATTTATCTTCTCAATTTCATAACTCTTTTAACCATAGTTTCAACCCTTCCC
66 CTAAAAAAACACTTATTTAGCTTCTCAATTTCATAAATCTTCTAACCATAGTTTCAA--C--CCC
* * * * * * *
19149445 CCTACCACAAAAAAATACTTCTTTAGCTTCTTATTTTCACAACTCTTTTAACCATAGTTTCAACC
127 ACTACAAAAAAAAAACACTTCTTTACCTTCTCAATTTCACAACTCTTTTAACCATAGTTTCAACC
19149510 CTT
192 C-T
* * *
19149513 CCCCCACCAAAAAAAACACTTTTTTAGCTTCTAAATTTCA-AAAATCTTCTAACCATAGTTTCAA
1 -CCCCA-C-AAAAAAACAATTCTTTAGATTCTAAATTTCACAAAATCTTCTAACCATAGTTTC-A
* * * ** *
19149577 ACCCCCCTCACAAAAAAACACTTCTTTAGCTTCTTAATTTTATAAATCTTCTAATTATAGTTTTA
62 A--CCCCT---AAAAAAACACTTATTTAGCTTCTCAATTTCATAAATCTTCTAACCATAGTTTCA
* * * * *
19149642 A-CCCAC-ACAAAAAAAAAACACTTTTTTACCTTCTCAATTCCACTAGTCTTCTAACCATAGTTT
122 ACCCCACTACAAAAAAAAAACACTTCTTTACCTTCTCAATTTCACAACTCTTTTAACCATAGTTT
19149705 CAAC
187 CAAC
19149709 TCCCCTAAAA
Statistics
Matches: 316, Mismatches: 54, Indels: 34
0.78 0.13 0.08
Matches are distributed among these distances:
186 27 0.09
187 68 0.22
188 4 0.01
189 1 0.00
191 3 0.01
192 1 0.00
194 1 0.00
196 1 0.00
197 50 0.16
198 1 0.00
199 5 0.02
200 72 0.23
201 32 0.10
203 5 0.02
206 45 0.14
ACGTcount: A:0.35, C:0.26, G:0.04, T:0.35
Consensus pattern (193 bp):
CCCCACAAAAAAACAATTCTTTAGATTCTAAATTTCACAAAATCTTCTAACCATAGTTTCAACCC
CTAAAAAAACACTTATTTAGCTTCTCAATTTCATAAATCTTCTAACCATAGTTTCAACCCCACTA
CAAAAAAAAAACACTTCTTTACCTTCTCAATTTCACAACTCTTTTAACCATAGTTTCAACCCT
Found at i:19151613 original size:3 final size:3
Alignment explanation
Indices: 19151605--19151646 Score: 66
Period size: 3 Copynumber: 13.7 Consensus size: 3
19151595 ATAAATTTGA
*
19151605 TAT TAT TAT TAT TAT TAT TAC TAT TAT TATT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TA
19151647 GTTTTATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:19151655 original size:19 final size:19
Alignment explanation
Indices: 19151608--19151643 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
19151598 AATTTGATAT
19151608 TATTATTA-TTATTATTAC
1 TATTATTATTTATTATTAC
19151626 TATTATTATTTATTATTA
1 TATTATTATTTATTATTA
19151644 TTAGTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (19 bp):
TATTATTATTTATTATTAC
Found at i:19151897 original size:10 final size:10
Alignment explanation
Indices: 19151882--19151922 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
19151872 TATATTTGTC
19151882 TTATTATATA
1 TTATTATATA
19151892 TTATTATATAA
1 TTATTATAT-A
19151903 TTATT-TATA
1 TTATTATATA
19151912 -TATATATATA
1 TTAT-TATATA
19151922 T
1 T
19151923 CTTTTCTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
8 3 0.11
9 2 0.07
10 16 0.59
11 6 0.22
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TTATTATATA
Found at i:19152531 original size:72 final size:72
Alignment explanation
Indices: 19152414--19152555 Score: 239
Period size: 72 Copynumber: 2.0 Consensus size: 72
19152404 TATTTTCAAA
*
19152414 CAAGTTTTAAACGATCTCAGGAATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATCCCTT
1 CAAGTTTTAAACGATCTCAGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCCTT
19152479 TTTTTCT
66 TTTTTCT
* * * *
19152486 CAAGTTTTAAACGGTCTCGGGAATTAAGAAAAGATTGTGTCCTAACTTACTGGGCATGATCCTTT
1 CAAGTTTTAAACGATCTCAGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCCTT
19152551 TTTTT
66 TTTTT
19152556 AAATCTGAGA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (72 bp):
CAAGTTTTAAACGATCTCAGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCCTT
TTTTTCT
Found at i:19158431 original size:238 final size:238
Alignment explanation
Indices: 19158013--19158493 Score: 865
Period size: 238 Copynumber: 2.0 Consensus size: 238
19158003 TGGCATGGGT
*
19158013 TCTTATATGAGTAGTGGGAAACGCTACGATTCGATAAGTCCTCCAGCCGAATTGATAAAGGGAAA
1 TCTTATACGAGTAGTGGGAAACGCTACGATTCGATAAGTCCTCCAGCCGAATTGATAAAGGGAAA
* *
19158078 GGCCATAGTGACGGAGCAAAAGAAGAAAAAAACAGCTGAGCCTGTGTTACCTATTACCGAGCTAG
66 GGCCATAGTGACAGAGCAAAAGAAGAAAAAAACAGCTGAGCCTGTGTTACCTATTACCGAGCCAG
* *
19158143 TGAAAGAGGAGGAAGCTAAGGAATTCCTCAAATTCATGAAGCATAGCGAATATAGTGTTGTGGAG
131 TGAAAGAGGAAGAAGCCAAGGAATTCCTCAAATTCATGAAGCATAGCGAATATAGTGTTGTGGAG
*
19158208 CAATTGCATAAGCAACCATCCCGCATATCCGTGTTAGCCTTGC
196 CAATTGCATAAGCAACCAGCCCGCATATCCGTGTTAGCCTTGC
* *
19158251 TCTTATACGCGTAGTGGGAAACGCTACGATTTGATAAGTCCTCCAGCCGAATTGATAAAGGGAAA
1 TCTTATACGAGTAGTGGGAAACGCTACGATTCGATAAGTCCTCCAGCCGAATTGATAAAGGGAAA
*
19158316 GGCCATAGTGACAGAGCAAAAGAAGAAAAAAATAG-TGAAGCCTGTGTTACCTATTACCGAGCCA
66 GGCCATAGTGACAGAGCAAAAGAAGAAAAAAACAGCTG-AGCCTGTGTTACCTATTACCGAGCCA
19158380 GTGAAAGAGGAAGAAGCCAAGGAATTCCTCAAATTCATGAAGCATAGCGAATATAGTGTTGTGGA
130 GTGAAAGAGGAAGAAGCCAAGGAATTCCTCAAATTCATGAAGCATAGCGAATATAGTGTTGTGGA
19158445 GCAATTGCATAAGCAACCAGCCCGCATATCCGTGTTAGCCTTGC
195 GCAATTGCATAAGCAACCAGCCCGCATATCCGTGTTAGCCTTGC
19158489 TCTTA
1 TCTTA
19158494 AGTTCTGAAG
Statistics
Matches: 233, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
237 2 0.01
238 231 0.99
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (238 bp):
TCTTATACGAGTAGTGGGAAACGCTACGATTCGATAAGTCCTCCAGCCGAATTGATAAAGGGAAA
GGCCATAGTGACAGAGCAAAAGAAGAAAAAAACAGCTGAGCCTGTGTTACCTATTACCGAGCCAG
TGAAAGAGGAAGAAGCCAAGGAATTCCTCAAATTCATGAAGCATAGCGAATATAGTGTTGTGGAG
CAATTGCATAAGCAACCAGCCCGCATATCCGTGTTAGCCTTGC
Found at i:19164883 original size:50 final size:50
Alignment explanation
Indices: 19164765--19165882 Score: 797
Period size: 50 Copynumber: 22.3 Consensus size: 50
19164755 AAGTCATAGC
* * ** *
19164765 GGAACAGATTGAAGCTAGAACAGCGAATCTTGCTTCCCCCGACATTGCAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CAGTGCAGT
** * ** *
19164816 TAAATAGATTGAAGCTACAACAGTAAATCTTACTTCTCTAGCAGTGCAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCAGTGCAGT
* * * * *
19164866 GGAACAGATTAAAGCTACAACAACGAATCTTGCTT-CCTCGACATTGCAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CAGTGCAGT
** * * * * *
19164916 TAAATAGATTGAAGCTACAATAGCGAATCTTACTTCCCTGGCGGTGTAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCAGTGCAGT
* * * * * *
19164966 GGAACAAATTGAAGCTACAACAGTGAATCTTGCTTTCCCGA-CATTACAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTAC-TTCCCTAGCAGTGCAGT
** * ** * * * *
19165016 TAAATAGATTGAAGCTACAACAATGAATCTTGCTTCCC-CGACATTGTAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CAGTGCAGT
** * ** * * *
19165066 TAAATAGATTGAAGCTACAACAATGAATCTTATTTCCCTGGC-GATGTAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCAG-TGCAGT
* * * * *
19165116 GGAACAGATTGAAGCTACAACATCAAATCTTACGTCCCTAGCGGTGTAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCAGTGCAGT
* * * *
19165166 GGAACAGATTGAAGCTACAACAACAAATCTTACTTCCC-CGACATTGCAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CAGTGCAGT
** * * * * *
19165216 TAAATAGATTGAAGCTACAACAGTGAATCTTATTTCCCTAACGGTGCAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCAGTGCAGT
* * *
19165266 GGAACAGATTGAAGCTGCAACAGCGAATCTTGCTTCCCT-GACATTGCAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CAGTGCAGT
** * *
19165316 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCTCTAGCAGTGCAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCAGTGCAGT
* *
19165366 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCT-GACATTGCAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CAGTGCAGT
** * * * * *
19165416 TAAATAGATTGAAGCTACAATA-CGAATCTTACTTCCCTGGCGGTGTAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCAGTGCAGT
* * * ** * *
19165465 GGAACAGATTGAAGCTACAACAGTGAATTTTGCTTTCCC-AAAATTACAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTAC-TTCCCTAGCAGTGCAGT
** * * *
19165515 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCT-GACGGTGTAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CAGTGCAGT
* * * *
19165565 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCC-CGACATTGTAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CAGTGCAGT
** * * ** * * *
19165615 TAAATAGATTGAAGTTACAACAATGAATCATACTTCCCTGGCAGTGTAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCAGTGCAGT
* * * * *
19165665 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCC-CGACATTGTAAT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CAGTGCAGT
** * * ** * * * *
19165715 TAAATAGATTGAAGTTACAACAATGAATCATACTTCCCTGGCGGTGTAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCAGTGCAGT
* * * * *
19165765 GGAACAGATTGAAGCTACAACATCAAATCATATTTCCCTGGC-GTGGCAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCAGT-GCAGT
* * * * * ** * *
19165815 AGAATAGATTAAAACTA-AATTTAGCGAATCTTGTTTCCCTGGCATTGCAGT
1 GGAACAGATTGAAGCTACAA--CAGCGAATCTTACTTCCCTAGCAGTGCAGT
* *
19165866 GGAATAGATTAAAGCTA
1 GGAACAGATTGAAGCTA
19165883 AAGCAGAGTA
Statistics
Matches: 840, Mismatches: 201, Indels: 52
0.77 0.18 0.05
Matches are distributed among these distances:
49 59 0.07
50 693 0.82
51 87 0.10
52 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (50 bp):
GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCAGTGCAGT
Found at i:19165802 original size:100 final size:100
Alignment explanation
Indices: 19164765--19165786 Score: 1330
Period size: 100 Copynumber: 10.2 Consensus size: 100
19164755 AAGTCATAGC
*
19164765 GGAACAGATTGAAGCTAGAACAGCGAATCTTGCTTCCCCCGACATTGCAGTTAAATAGATTGAAG
1 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTT-CCCCGACATTGCAGTTAAATAGATTGAAG
* * * * * *
19164830 CTACAACAGTAAATCTTACTTCTCTAGCAGTGCAGT
65 CTACAACAATGAATCTTACTTCCCTGGCGGTGTAGT
* * *
19164866 GGAACAGATTAAAGCTACAACAACGAATCTTGCTTCCTCGACATTGCAGTTAAATAGATTGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAATAGATTGAAGC
* **
19164931 TACAATAGCGAATCTTACTTCCCTGGCGGTGTAGT
66 TACAACAATGAATCTTACTTCCCTGGCGGTGTAGT
* * * *
19164966 GGAACAAATTGAAGCTACAACAGTGAATCTTGCTTTCCCGACATTACAGTTAAATAGATTGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAATAGATTGAAGC
* * * **
19165031 TACAACAATGAATCTTGCTTCCCCGACATTGTAGT
66 TACAACAATGAATCTTACTTCCCTGGCGGTGTAGT
** * ** ** * * * ** *
19165066 TAAATAGATTGAAGCTACAACAATGAATCTTATTTCCCTGGCGA-TGTAGTGGAACAGATTGAAG
1 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGAC-ATTGCAGTTAAATAGATTGAAG
* * *
19165130 CTACAAC-ATCAAATCTTACGTCCCTAGCGGTGTAGT
65 CTACAACAAT-GAATCTTACTTCCCTGGCGGTGTAGT
* * *
19165166 GGAACAGATTGAAGCTACAACAACAAATCTTACTTCCCCGACATTGCAGTTAAATAGATTGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAATAGATTGAAGC
* * ** *
19165231 TACAACAGTGAATCTTATTTCCCTAACGGTGCAGT
66 TACAACAATGAATCTTACTTCCCTGGCGGTGTAGT
* *
19165266 GGAACAGATTGAAGCTGCAACAGCGAATCTTGCTTCCCTGACATTGCAGTTAAATAGATTGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAATAGATTGAAGC
** * * * *
19165331 TACAACAGCGAATCTTACTTCTCTAGCAGTGCAGT
66 TACAACAATGAATCTTACTTCCCTGGCGGTGTAGT
*
19165366 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCTGACATTGCAGTTAAATAGATTGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAATAGATTGAAGC
* *
19165431 TACAA-TACGAATCTTACTTCCCTGGCGGTGTAGT
66 TACAACAATGAATCTTACTTCCCTGGCGGTGTAGT
* * * * * *
19165465 GGAACAGATTGAAGCTACAACAGTGAATTTTGCTTTCCCAAAATTACAGTTAAATAGATTGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAATAGATTGAAGC
** *
19165530 TACAACAGCGAATCTTACTTCCCTGACGGTGTAGT
66 TACAACAATGAATCTTACTTCCCTGGCGGTGTAGT
* *
19165565 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGTAGTTAAATAGATTGAAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAATAGATTGAAGC
* *
19165630 TACAACAATGAATCATACTTCCCTGGCAGTGTAGT
66 TACAACAATGAATCTTACTTCCCTGGCGGTGTAGT
* * *
19165665 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGTAATTAAATAGATTGAAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAATAGATTGAAGC
*
19165730 TACAACAATGAATCATACTTCCCTGGCGGTGTAGT
66 TACAACAATGAATCTTACTTCCCTGGCGGTGTAGT
19165765 GGAACAGATTGAAGCTACAACA
1 GGAACAGATTGAAGCTACAACA
19165787 TCAAATCATA
Statistics
Matches: 807, Mismatches: 109, Indels: 11
0.87 0.12 0.01
Matches are distributed among these distances:
99 89 0.11
100 684 0.85
101 34 0.04
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (100 bp):
GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAATAGATTGAAGC
TACAACAATGAATCTTACTTCCCTGGCGGTGTAGT
Found at i:19165824 original size:150 final size:150
Alignment explanation
Indices: 19164770--19165804 Score: 956
Period size: 150 Copynumber: 6.9 Consensus size: 150
19164760 ATAGCGGAAC
* * * * * ** *
19164770 AGATTGAAGCTAGAACAGCGAATCTTGCTTCCCCCGACATTGCAGTTAAATAGATTGAAGCTACA
1 AGATTGAAGCTACAACAGCGAATCTTACTT-CCCTGACAGTGTAGTGGAACAGATTGAAGCTACA
* * * * * * *
19164835 ACAGTAAATCTTACTTCTCTAGCAGTGCAGTGGAACAGATTAAAGCTACAACAACGAATCTTGCT
65 ACAGTGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACAACATCGAATCTTACT
19164900 T-CCTCGACATTGCAGTTAAAT
130 TCCCT-GACATTGCAGTTAAAT
* * * *
19164921 AGATTGAAGCTACAATAGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACAGTGTAGTGGAACAGATTGAAGCTACAA
* * * ** ** * *
19164986 CAGTGAATCTTGCTTTCCC-GACATTACAGTTAAATAGATTGAAGCTACAACAAT-GAATCTTGC
66 CAGTGAATCTTAC-TTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACAAC-ATCGAATCTTAC
* *
19165049 TTCCCCGACATTGTAGTTAAAT
129 TTCCCTGACATTGCAGTTAAAT
** * *
19165071 AGATTGAAGCTACAACAATGAATCTTATTTCCCTGGC-GATGTAGTGGAACAGATTGAAGCTACA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACAG-TGTAGTGGAACAGATTGAAGCTACA
* * * * * *
19165135 ACA-TCAAATCTTACGTCCCTAGCGGTGTAGTGGAACAGATTGAAGCTACAACAACAAATCTTAC
65 ACAGT-GAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACAACATCGAATCTTAC
*
19165199 TTCCCCGACATTGCAGTTAAAT
129 TTCCCTGACATTGCAGTTAAAT
* * * * * *
19165221 AGATTGAAGCTACAACAGTGAATCTTATTTCCCTAACGGTGCAGTGGAACAGATTGAAGCTGCAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACAGTGTAGTGGAACAGATTGAAGCTACAA
* * * * * ** * *
19165286 CAGCGAATCTTGCTTCCCTGACATTGCAGTTAAATAGATTGAAGCTACAACAGCGAATCTTACTT
66 CAGTGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACAACATCGAATCTTACTT
* * ** *
19165351 CTCT-AGCAGTGCAGTGGAAC
131 CCCTGA-CATTGCAGTTAAAT
* * * ** *
19165371 AGATTGAAGCTACAACAGCGAATCTTGCTTCCCTGACATTGCAGTTAAATAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACAGTGTAGTGGAACAGATTGAAGCTACAA
* * * * *
19165436 TA-CGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACAGT-GAATTTTGCT
66 CAGTGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACAACA-TCGAATCTTAC-
* * *
19165499 TTCCC-AAAATTACAGTTAAAT
129 TTCCCTGACATTGCAGTTAAAT
*
19165520 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACGGTGTAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACAGTGTAGTGGAACAGATTGAAGCTACAA
* * * * * ** * * *
19165585 CAGCGAATCTTGCTTCCCCGACATTGTAGTTAAATAGATTGAAGTTACAACAAT-GAATCATACT
66 CAGTGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACAAC-ATCGAATCTTACT
* * * ** *
19165649 TCCCTGGCAGTGTAGTGGAAC
130 TCCCTGACATTGCAGTTAAAT
* * * * ** * *
19165670 AGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGTAATTAAATAGATTGAAGTTACAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACAGTGTAGTGGAACAGATTGAAGCTACAA
* * * * * *
19165735 CAATGAATCATACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACATCAAATCATATTT
66 CAGTGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACAACATCGAATCTTACTT
19165800 CCCTG
131 CCCTG
19165805 GCGTGGCAGT
Statistics
Matches: 714, Mismatches: 153, Indels: 35
0.79 0.17 0.04
Matches are distributed among these distances:
149 130 0.18
150 548 0.77
151 36 0.05
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (150 bp):
AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACAGTGTAGTGGAACAGATTGAAGCTACAA
CAGTGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACAACATCGAATCTTACTT
CCCTGACATTGCAGTTAAAT
Found at i:19166187 original size:132 final size:132
Alignment explanation
Indices: 19165992--19166254 Score: 411
Period size: 132 Copynumber: 2.0 Consensus size: 132
19165982 TCGAAGATAC
* * *
19165992 CAGCCTTGTCTCCTTGAGAAGCAGTAGAGTAGGTTGAAGATTGTATATCCTGTCTCCCTAAGCAG
1 CAGCCTTGTCTCCCTGAGAAGCAGTAGAGTAGATTGAAGATTGTAGATCCTGTCTCCCTAAGCAG
*
19166057 TAGTGGAGCAGATCGAAGAT-GACGAATCTTATTTTCCCAAGATAGTAGGGAAGCAGATTTAAGC
66 TAGTGGAGCAGATCGAAGATAG-CGAATCTTATCTTCCCAAGATAGTAGGGAAGCAGATTTAAGC
19166121 CAA
130 CAA
* *
19166124 CAGCCTTGTCTCCCTGAGAAGCAGTGGAGTAGATTGAATATTGTAGATCCTGTCTCCCTAAGCAG
1 CAGCCTTGTCTCCCTGAGAAGCAGTAGAGTAGATTGAAGATTGTAGATCCTGTCTCCCTAAGCAG
* * * * *
19166189 TAGTGGAGCAGATCGAAGGTAGTGAATCTTATCTTCTCAAGGTAGTAGGGAAGTAGATTTAAGCC
66 TAGTGGAGCAGATCGAAGATAGCGAATCTTATCTTCCCAAGATAGTAGGGAAGCAGATTTAAGCC
19166254 A
131 A
19166255 CTAGTCTTAT
Statistics
Matches: 119, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
132 118 0.99
133 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (132 bp):
CAGCCTTGTCTCCCTGAGAAGCAGTAGAGTAGATTGAAGATTGTAGATCCTGTCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGATAGCGAATCTTATCTTCCCAAGATAGTAGGGAAGCAGATTTAAGCC
AA
Found at i:19166485 original size:44 final size:44
Alignment explanation
Indices: 19166414--19166522 Score: 119
Period size: 44 Copynumber: 2.5 Consensus size: 44
19166404 GCTACAAGTC
* * * ** *
19166414 TTATCTTTTTGAAGTTACAGTGGAGCAGATTAAAGCCACAAACA
1 TTATCTCTCTGAAGTTGCAGTAAAGCAGATTAAAGCAACAAACA
* * * *
19166458 TTATCTCTCTGAAGTTGCAGTAAAGCAGGTTGAAGTAACAAACG
1 TTATCTCTCTGAAGTTGCAGTAAAGCAGATTAAAGCAACAAACA
*
19166502 TTATCCCTCTGAAGTTGCAGT
1 TTATCTCTCTGAAGTTGCAGT
19166523 GGGACAGGTT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 54 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
TTATCTCTCTGAAGTTGCAGTAAAGCAGATTAAAGCAACAAACA
Found at i:19168917 original size:73 final size:73
Alignment explanation
Indices: 19168798--19168940 Score: 232
Period size: 73 Copynumber: 2.0 Consensus size: 73
19168788 TATTTTCAAA
* * * *
19168798 CAAGTTTTAAACAATCTCGTGAATTAATAAGAGATCGTGTCCTAACTTACTATGCATGATCCCTT
1 CAAGTTTTAAACAATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTAGGCATGATCCCTT
19168863 TTTTTTCT
66 TTTTTTCT
* *
19168871 CAAGTTTTAAACAATCTCGAGAATTAAGAAAAGATTGTGTCCTAACTTACTGGGCATGATCCCTT
1 CAAGTTTTAAACAATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTAGGCATGATCCCTT
19168936 TTTTT
66 TTTTT
19168941 AAATCCGAGA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 64 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (73 bp):
CAAGTTTTAAACAATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTAGGCATGATCCCTT
TTTTTTCT
Found at i:19170229 original size:25 final size:25
Alignment explanation
Indices: 19170195--19170244 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
19170185 AAAGCAATTC
19170195 CTTAGCTTCTCAATTTCACAAATCT
1 CTTAGCTTCTCAATTTCACAAATCT
19170220 CTTAGCTTCTCAATTTCACAAATCT
1 CTTAGCTTCTCAATTTCACAAATCT
19170245 TCTTTCTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.04, T:0.40
Consensus pattern (25 bp):
CTTAGCTTCTCAATTTCACAAATCT
Found at i:19171637 original size:89 final size:90
Alignment explanation
Indices: 19171529--19171707 Score: 351
Period size: 89 Copynumber: 2.0 Consensus size: 90
19171519 ATTATTATTC
19171529 ATAAATCATAATTAACTCATAATTTTTTTCTTTCATATATAATTATATAGATAATTATAAACATT
1 ATAAATCATAATTAACTCATAATTTTTTTCTTTCATATATAATTATATAGATAATTATAAACATT
19171594 AAATTTTCCTAATCACACCTTTGCA
66 AAATTTTCCTAATCACACCTTTGCA
19171619 ATAAATCAT-ATTAACTCATAATTTTTTTCTTTCATATATAATTATATAGATAATTATAAACATT
1 ATAAATCATAATTAACTCATAATTTTTTTCTTTCATATATAATTATATAGATAATTATAAACATT
19171683 AAATTTTCCTAATCACACCTTTGCA
66 AAATTTTCCTAATCACACCTTTGCA
19171708 TTTCATTTAT
Statistics
Matches: 89, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
89 80 0.90
90 9 0.10
ACGTcount: A:0.40, C:0.15, G:0.02, T:0.44
Consensus pattern (90 bp):
ATAAATCATAATTAACTCATAATTTTTTTCTTTCATATATAATTATATAGATAATTATAAACATT
AAATTTTCCTAATCACACCTTTGCA
Found at i:19178062 original size:31 final size:31
Alignment explanation
Indices: 19178027--19178094 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
19178017 AAAAAAACAT
*
19178027 AATAGCCCAATGACTTAAATAAAAACTTTCA
1 AATAGCCCAATAACTTAAATAAAAACTTTCA
** * *
19178058 AATAGTTCAATAACTTAAATGAAAACTTTCG
1 AATAGCCCAATAACTTAAATAAAAACTTTCA
19178089 AATAGC
1 AATAGC
19178095 TCTGTGACCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (31 bp):
AATAGCCCAATAACTTAAATAAAAACTTTCA
Found at i:19179619 original size:7 final size:7
Alignment explanation
Indices: 19179607--19179632 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
19179597 TCAGGCTATG
19179607 TTTAAAT
1 TTTAAAT
19179614 TTTAAAT
1 TTTAAAT
19179621 TTTAAAT
1 TTTAAAT
19179628 TTTAA
1 TTTAA
19179633 GAATTTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TTTAAAT
Found at i:19187951 original size:29 final size:30
Alignment explanation
Indices: 19187902--19187961 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
19187892 CCAAAAATAT
* *
19187902 TATGTTATAAAAATATTATAT-TAATTATA
1 TATGTTATAAAAAAATGATATATAATTATA
*
19187931 TATGTTA-AATAAAAATGATATATATTTATA
1 TATGTTATAA-AAAAATGATATATAATTATA
19187961 T
1 T
19187962 TAAATCACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 2 0.08
29 16 0.62
30 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (30 bp):
TATGTTATAAAAAAATGATATATAATTATA
Found at i:19192145 original size:13 final size:13
Alignment explanation
Indices: 19192127--19192151 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19192117 AGATGACAGG
19192127 TGTTTTTTTTTTT
1 TGTTTTTTTTTTT
19192140 TGTTTTTTTTTT
1 TGTTTTTTTTTT
19192152 GTGTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (13 bp):
TGTTTTTTTTTTT
Found at i:19194429 original size:23 final size:23
Alignment explanation
Indices: 19194387--19194431 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
19194377 TATATATTAA
* * *
19194387 ATATATATTTTTTATTTTTAATC
1 ATATATATTATATATATTTAATC
19194410 ATATATATTATATATATTTAAT
1 ATATATATTATATATATTTAAT
19194432 ATGGGTCGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
ATATATATTATATATATTTAATC
Found at i:19194726 original size:19 final size:20
Alignment explanation
Indices: 19194704--19194747 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
19194694 TAATAAAACC
*
19194704 AAAAATTTATTTTAAAA-TA
1 AAAAATGTATTTTAAAATTA
19194723 AAAAA-GTATTTTAAAATTA
1 AAAAATGTATTTTAAAATTA
19194742 AAAAAT
1 AAAAAT
19194748 AAAAAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAAATGTATTTTAAAATTA
Found at i:19194732 original size:18 final size:19
Alignment explanation
Indices: 19194711--19194746 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
19194701 ACCAAAAATT
19194711 TATTTTAAAA-TAAAAAAG
1 TATTTTAAAATTAAAAAAG
19194729 TATTTTAAAATTAAAAAA
1 TATTTTAAAATTAAAAAA
19194747 TAAAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (19 bp):
TATTTTAAAATTAAAAAAG
Found at i:19195762 original size:3 final size:3
Alignment explanation
Indices: 19195754--19195794 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
19195744 AAATTAGTTA
19195754 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
19195795 AAGGNNNNNN
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:19204271 original size:27 final size:27
Alignment explanation
Indices: 19204238--19204338 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
19204228 AAGCCCAGGT
*
19204238 TGGAGAATGTGGGTCCAAAGCCTGAGG
1 TGGAGAATGAGGGTCCAAAGCCTGAGG
* * *
19204265 TGAAGAATGAGGGTTCAAAGCCCGAGG
1 TGGAGAATGAGGGTCCAAAGCCTGAGG
* * *
19204292 TGGAGAGTGAGGGTCTAAAGGCTGAGG
1 TGGAGAATGAGGGTCCAAAGCCTGAGG
* * *
19204319 GGGAGAATGATGATCCAAAG
1 TGGAGAATGAGGGTCCAAAG
19204339 GGCCAGCTGC
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.31, C:0.12, G:0.41, T:0.17
Consensus pattern (27 bp):
TGGAGAATGAGGGTCCAAAGCCTGAGG
Found at i:19204338 original size:54 final size:54
Alignment explanation
Indices: 19204221--19204338 Score: 130
Period size: 54 Copynumber: 2.2 Consensus size: 54
19204211 AGCTCCAGTC
* * *
19204221 TGATCCCAAGCCCAGGTTGGAGAATGTGGGTCCAAAGCCTGAGGTGAAGAATGA
1 TGATCCAAAGCCCAGGTTGGAGAATGAGGGTCCAAAGCCTGAGGGGAAGAATGA
* * * * * * *
19204275 GGGTTCAAAGCCCGAGG-TGGAGAGTGAGGGTCTAAAGGCTGAGGGGGAGAATGA
1 TGATCCAAAGCCC-AGGTTGGAGAATGAGGGTCCAAAGCCTGAGGGGAAGAATGA
19204329 TGATCCAAAG
1 TGATCCAAAG
19204339 GGCCAGCTGC
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
54 47 0.94
55 3 0.06
ACGTcount: A:0.30, C:0.15, G:0.38, T:0.17
Consensus pattern (54 bp):
TGATCCAAAGCCCAGGTTGGAGAATGAGGGTCCAAAGCCTGAGGGGAAGAATGA
Found at i:19207855 original size:21 final size:22
Alignment explanation
Indices: 19207831--19207880 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
19207821 TAAAATTTCA
*
19207831 TTTTTTTAATTATGT-T-AATAT
1 TTTTTTTAA-TAAGTCTAAATAT
19207852 TTTTTTT-ATAAGTCTAAATAT
1 TTTTTTTAATAAGTCTAAATAT
19207873 TTTTTTTA
1 TTTTTTTA
19207881 TGTTATAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 4 0.16
20 2 0.08
21 19 0.76
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (22 bp):
TTTTTTTAATAAGTCTAAATAT
Found at i:19207889 original size:20 final size:20
Alignment explanation
Indices: 19207847--19207891 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
19207837 TAATTATGTT
*
19207847 AATATTTTTTTTATAAGTCTA
1 AATATTTTTTTTAT-AGTATA
19207868 AATATTTTTTTTAT-GTTATA
1 AATATTTTTTTTATAG-TATA
19207888 AATA
1 AATA
19207892 GACGGGGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 7 0.32
21 14 0.64
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (20 bp):
AATATTTTTTTTATAGTATA
Found at i:19210083 original size:27 final size:27
Alignment explanation
Indices: 19210028--19210084 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
19210018 AACTGCAGGG
* * *
19210028 TTCAAATCCTCAGCTGGAGAGTGATGA
1 TTCAAAGCCTCAGCTGGACAGTGAAGA
*
19210055 TTCAAAGCCTCAGCTGGACATTGAAGA
1 TTCAAAGCCTCAGCTGGACAGTGAAGA
19210082 TTC
1 TTC
19210085 GAAGGTGCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (27 bp):
TTCAAAGCCTCAGCTGGACAGTGAAGA
Found at i:19211344 original size:15 final size:15
Alignment explanation
Indices: 19211324--19211356 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
19211314 CAAAACGGCG
19211324 CAAATGGAATTCTGA
1 CAAATGGAATTCTGA
19211339 CAAATGGAATTCTGA
1 CAAATGGAATTCTGA
19211354 CAA
1 CAA
19211357 TATAGAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.24
Consensus pattern (15 bp):
CAAATGGAATTCTGA
Found at i:19213906 original size:23 final size:26
Alignment explanation
Indices: 19213878--19213934 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
19213868 TATATTTCAG
19213878 ATTTTTATAAAA-A-AATTATTTT-TA
1 ATTTTTATAAAATATAATT-TTTTATA
*
19213902 ATTTTTTTAAAATATAATTTTTTATA
1 ATTTTTATAAAATATAATTTTTTATA
19213928 ATTTTTA
1 ATTTTTA
19213935 CAATTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 11 0.39
25 5 0.18
26 12 0.43
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTTTATAAAATATAATTTTTTATA
Found at i:19213927 original size:10 final size:10
Alignment explanation
Indices: 19213914--19213956 Score: 56
Period size: 10 Copynumber: 4.6 Consensus size: 10
19213904 TTTTTTAAAA
19213914 TATAATTTTT
1 TATAATTTTT
19213924 TATAA-TTTT
1 TATAATTTTT
*
19213933 TACAATTTTT
1 TATAATTTTT
19213943 T-T-ATTTTT
1 TATAATTTTT
19213951 TATAAT
1 TATAAT
19213957 AACATAATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
8 7 0.25
9 9 0.32
10 12 0.43
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (10 bp):
TATAATTTTT
Found at i:19215272 original size:20 final size:20
Alignment explanation
Indices: 19215249--19215292 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
19215239 AAAATTATAG
19215249 AAAATT-CTAAAAAAACTATT
1 AAAATTACTAAAAAAA-TATT
* *
19215269 AAAATTATTTAAAAAATATT
1 AAAATTACTAAAAAAATATT
19215289 AAAA
1 AAAA
19215293 ATAACATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAATTACTAAAAAAATATT
Found at i:19220043 original size:112 final size:112
Alignment explanation
Indices: 19219902--19220140 Score: 433
Period size: 112 Copynumber: 2.1 Consensus size: 112
19219892 ATTTACAAGT
19219902 TATTTTTTAATTGTATTCATGTAATGGATTCCACCAAAACGTGAGCAAATAATATTTATAGATTA
1 TATTTTTTAA-T-TATTCATGTAATGGATTCCACCAAAACGTGAGCAAATAATATTTATAGATTA
19219967 TTTCAAATAATTGTTAATAGTAAAGATTACCGAAAATATTATTATTAAA
64 TTTCAAATAATTGTTAATAGTAAAGATTACCGAAAATATTATTATTAAA
19220016 TATTTTTTAATTATTCATGTAATGGATTCCACCAAAACGTGAGCAAATAATATTTATAGATTATT
1 TATTTTTTAATTATTCATGTAATGGATTCCACCAAAACGTGAGCAAATAATATTTATAGATTATT
**
19220081 TCAAATAATTGTTAATAGTAAAGATTTTCGAAAATATTATTATTAAA
66 TCAAATAATTGTTAATAGTAAAGATTACCGAAAATATTATTATTAAA
19220128 TATTTTTTTAATT
1 TA-TTTTTTAATT
19220141 TATAATATAT
Statistics
Matches: 122, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
112 101 0.83
113 11 0.09
114 10 0.08
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (112 bp):
TATTTTTTAATTATTCATGTAATGGATTCCACCAAAACGTGAGCAAATAATATTTATAGATTATT
TCAAATAATTGTTAATAGTAAAGATTACCGAAAATATTATTATTAAA
Found at i:19223585 original size:138 final size:138
Alignment explanation
Indices: 19223332--19223738 Score: 627
Period size: 138 Copynumber: 2.9 Consensus size: 138
19223322 ACATTAAGCG
*
19223332 TGTTGTGTCACGACACCAAGCCTCCAAGGTCGCGATACCACTGCTGATTGTTGAAGTGAAGAAGC
1 TGTTTTGTCACGACACCAAGCCTCCAAGGTCGCGATACCACTGCTGATTGTTGAAGTGAAGAAGC
* * * *
19223397 CAGGACTACTGCTGAGGATATCGCAACACCAACCAGTTAGTGTTGCAACATTGAGAACCCCTAAA
66 CAGGACTACTGTTGAGAATGTCGCAACACCAACCAGTTAGTGTTGCAACATTGAGAACCCCCAAA
19223462 GCTAAGAA
131 GCTAAGAA
* * * *
19223470 TGTTTTGTCACAACACCAAGCCTCCAAGGTCGCGATACCATTGCTGACTGTTGAAGTGAGGAAGC
1 TGTTTTGTCACGACACCAAGCCTCCAAGGTCGCGATACCACTGCTGATTGTTGAAGTGAAGAAGC
* * *
19223535 CAGGAGTACTGTTGAGAATGTCGCAACACCAATCAGTTGGTGTTGCAACATTGAGAACCCCCAAA
66 CAGGACTACTGTTGAGAATGTCGCAACACCAACCAGTTAGTGTTGCAACATTGAGAACCCCCAAA
* *
19223600 GCTAATAG
131 GCTAAGAA
*
19223608 TGTTTTGTCACGACACCAAGCCTCCAAGGTCGCGGTACCACTGCTGATTGTTGAAGTGAAGAAGC
1 TGTTTTGTCACGACACCAAGCCTCCAAGGTCGCGATACCACTGCTGATTGTTGAAGTGAAGAAGC
* ** *
19223673 CAGGACTACTGTTGA-AGATGTCGGAACACCAACCAGTTAAAGTTGCAACATTGAGAACCTCCAA
66 CAGGACTACTGTTGAGA-ATGTCGCAACACCAACCAGTTAGTGTTGCAACATTGAGAACCCCCAA
19223737 AG
130 AG
19223739 TCAAGAGTGT
Statistics
Matches: 242, Mismatches: 26, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
137 1 0.00
138 241 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (138 bp):
TGTTTTGTCACGACACCAAGCCTCCAAGGTCGCGATACCACTGCTGATTGTTGAAGTGAAGAAGC
CAGGACTACTGTTGAGAATGTCGCAACACCAACCAGTTAGTGTTGCAACATTGAGAACCCCCAAA
GCTAAGAA
Found at i:19226461 original size:12 final size:12
Alignment explanation
Indices: 19226434--19226467 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
19226424 CTACATCTAC
*
19226434 GAAAATAAAAAA
1 GAAAAGAAAAAA
19226446 -AAAAGAAAAAA
1 GAAAAGAAAAAA
19226457 GAAAAGAAAAA
1 GAAAAGAAAAA
19226468 GACTTTGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (12 bp):
GAAAAGAAAAAA
Done.