Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 64 of 79
Found at i:21166901 original size:66 final size:66
Alignment explanation
Indices: 21166819--21166955 Score: 222
Period size: 66 Copynumber: 2.1 Consensus size: 66
21166809 TTTTTAATTA
* * *
21166819 CAAACCTATCTGGTTTTACAAACTAAATCACGATTTTCAAATTTAAGAACTCA-AAACTTTTCGC
1 CAAAACTATCTAGTTTTACAAACTAAATCACAATTTTCAAATTTAAGAACTCATAAA-TTTTCGC
21166883 TG
65 TG
*
21166885 CAAAACTATCTAGTTTTACAAACTAAATCACAATTTTCAAATTTAAGAACTCATAAATTTTCGTT
1 CAAAACTATCTAGTTTTACAAACTAAATCACAATTTTCAAATTTAAGAACTCATAAATTTTCGCT
21166950 G
66 G
21166951 CAAAA
1 CAAAA
21166956 TATAGTATTC
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
66 63 0.95
67 3 0.05
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.34
Consensus pattern (66 bp):
CAAAACTATCTAGTTTTACAAACTAAATCACAATTTTCAAATTTAAGAACTCATAAATTTTCGCT
G
Found at i:21192429 original size:17 final size:18
Alignment explanation
Indices: 21192397--21192431 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
21192387 CCAAGAAGTT
*
21192397 CACTCGTGTGGGCCCACA
1 CACTCGAGTGGGCCCACA
21192415 CACTCGAGT-GGCCCACA
1 CACTCGAGTGGGCCCACA
21192432 TGGCCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.20, C:0.40, G:0.26, T:0.14
Consensus pattern (18 bp):
CACTCGAGTGGGCCCACA
Found at i:21194752 original size:36 final size:36
Alignment explanation
Indices: 21194705--21194786 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
21194695 TTCTGAACCA
* * * *
21194705 TGTTAACTTGGTGAAT-TATATTATTATGGCAAACTG
1 TGTTAATTTGGTG-ATCTATATTAATACGGAAAACTG
*
21194741 TGTTAATTTGGTGATCTGTATTAATACGGAAAACTG
1 TGTTAATTTGGTGATCTATATTAATACGGAAAACTG
*
21194777 TATTAATTTG
1 TGTTAATTTG
21194787 TCAAACTATG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 2 0.05
36 37 0.95
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (36 bp):
TGTTAATTTGGTGATCTATATTAATACGGAAAACTG
Found at i:21195492 original size:51 final size:51
Alignment explanation
Indices: 21195437--21195536 Score: 119
Period size: 51 Copynumber: 2.0 Consensus size: 51
21195427 GCATGAGCTG
* ** *
21195437 TTATTTTGAATGAATTGTTATTCAGTATGAACTGATATTTCATATGAACTA
1 TTATTTTGAATGAACTGCCATTCAGTAAGAACTGATATTTCATATGAACTA
* * ** *
21195488 TTATTTTGCATGAGCTGCCATTTGGTAAGAACTGTTATTTCATATGAAC
1 TTATTTTGAATGAACTGCCATTCAGTAAGAACTGATATTTCATATGAAC
21195537 AGATGTTTGG
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (51 bp):
TTATTTTGAATGAACTGCCATTCAGTAAGAACTGATATTTCATATGAACTA
Found at i:21195536 original size:17 final size:17
Alignment explanation
Indices: 21195446--21195536 Score: 58
Period size: 17 Copynumber: 5.4 Consensus size: 17
21195436 GTTATTTTGA
*
21195446 ATGAATTGTTA-TTCAGT
1 ATGAACTGTTATTTCA-T
*
21195463 ATGAACTGATATTTCAT
1 ATGAACTGTTATTTCAT
* ***
21195480 ATGAACTATTATTTTGC
1 ATGAACTGTTATTTCAT
* ** **
21195497 ATGAGCTGCCATTTGGT
1 ATGAACTGTTATTTCAT
*
21195514 AAGAACTGTTATTTCAT
1 ATGAACTGTTATTTCAT
21195531 ATGAAC
1 ATGAAC
21195537 AGATGTTTGG
Statistics
Matches: 53, Mismatches: 20, Indels: 2
0.71 0.27 0.03
Matches are distributed among these distances:
17 49 0.92
18 4 0.08
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (17 bp):
ATGAACTGTTATTTCAT
Found at i:21196578 original size:16 final size:16
Alignment explanation
Indices: 21196557--21196588 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
21196547 TAAATATTTC
21196557 ATGATTAATTGTATGG
1 ATGATTAATTGTATGG
21196573 ATGATTAATTGTATGG
1 ATGATTAATTGTATGG
21196589 TGTGAGTCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (16 bp):
ATGATTAATTGTATGG
Found at i:21198993 original size:22 final size:22
Alignment explanation
Indices: 21198965--21199014 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
21198955 GGCTTGAAGT
21198965 TGGATGCCGTGACTTTGGCTTG
1 TGGATGCCGTGACTTTGGCTTG
*
21198987 TGGATGCTGTGACTTTGGCTTG
1 TGGATGCCGTGACTTTGGCTTG
21199009 TGGATG
1 TGGATG
21199015 TCACAACATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.10, C:0.14, G:0.38, T:0.38
Consensus pattern (22 bp):
TGGATGCCGTGACTTTGGCTTG
Found at i:21205016 original size:51 final size:51
Alignment explanation
Indices: 21204956--21205169 Score: 293
Period size: 51 Copynumber: 4.2 Consensus size: 51
21204946 AGGGCGGTCA
* *
21204956 ATTATGTAAAGCTCTATGTATGAACTGTGAATGCAAGATATGTGCGTACTG
1 ATTATGTAAAGTTCTATGTATGAACTGTGAATGCAAGATATGTGCATACTG
* *
21205007 ATTATGTAAAGTTCTATATATGAATTGTGAATGCAAGATATGTGCATACTG
1 ATTATGTAAAGTTCTATGTATGAACTGTGAATGCAAGATATGTGCATACTG
* * * ** *
21205058 ATTTTGTAAAGTTCTATGTGTGAACTGTGAATGCAAGATATGCGTGTACTA
1 ATTATGTAAAGTTCTATGTATGAACTGTGAATGCAAGATATGTGCATACTG
* * * * *
21205109 ATTATGTAAAGTTCTATCTCTCAATTGTGAATGCAAGGTATGTGCATACTG
1 ATTATGTAAAGTTCTATGTATGAACTGTGAATGCAAGATATGTGCATACTG
21205160 ATTATGTAAA
1 ATTATGTAAA
21205170 AATTTTATGT
Statistics
Matches: 141, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 141 1.00
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.36
Consensus pattern (51 bp):
ATTATGTAAAGTTCTATGTATGAACTGTGAATGCAAGATATGTGCATACTG
Found at i:21205082 original size:102 final size:102
Alignment explanation
Indices: 21204956--21205183 Score: 339
Period size: 102 Copynumber: 2.2 Consensus size: 102
21204946 AGGGCGGTCA
* * * *
21204956 ATTATGTAAAGCTCTATGTATGAACTGTGAATGCAAGATATGTGCGTACTGATTATGTAAAGTTC
1 ATTATGTAAAGTTCTATGTGTGAACTGTGAATGCAAGATATGCGCGTACTAATTATGTAAAGTTC
*
21205021 TATATATGAATTGTGAATGCAAGATATGTGCATACTG
66 TATATATCAATTGTGAATGCAAGATATGTGCATACTG
* *
21205058 ATTTTGTAAAGTTCTATGTGTGAACTGTGAATGCAAGATATGCGTGTACTAATTATGTAAAGTTC
1 ATTATGTAAAGTTCTATGTGTGAACTGTGAATGCAAGATATGCGCGTACTAATTATGTAAAGTTC
* * *
21205123 TATCTCTCAATTGTGAATGCAAGGTATGTGCATACTG
66 TATATATCAATTGTGAATGCAAGATATGTGCATACTG
* *
21205160 ATTATGTAAAAATTTTATGTGTGA
1 ATTATGT-AAAGTTCTATGTGTGA
21205184 TCTGGCATTG
Statistics
Matches: 112, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
102 98 0.88
103 14 0.12
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (102 bp):
ATTATGTAAAGTTCTATGTGTGAACTGTGAATGCAAGATATGCGCGTACTAATTATGTAAAGTTC
TATATATCAATTGTGAATGCAAGATATGTGCATACTG
Found at i:21205505 original size:32 final size:32
Alignment explanation
Indices: 21205458--21205581 Score: 151
Period size: 32 Copynumber: 3.8 Consensus size: 32
21205448 GTCGTATCGT
* * *
21205458 TGTGCAAGTTGTTCAATATGCGTGCCGTAAAA
1 TGTGCGAGTTGTTCAATATGCGTGCCATAGAA
* *
21205490 TGTGTGAGTTGTTCAATATGCATGCCATAGAA
1 TGTGCGAGTTGTTCAATATGCGTGCCATAGAA
* * *
21205522 TGTGCGAGTTATTCAA-ATTGTGTGTCATAGAA
1 TGTGCGAGTTGTTCAATA-TGCGTGCCATAGAA
21205554 TGTGCGAGTTGTTCAAATATGCGTGCCA
1 TGTGCGAGTTGTTC-AATATGCGTGCCA
21205582 AATAGTGCGA
Statistics
Matches: 76, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
31 1 0.01
32 65 0.86
33 9 0.12
34 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.34
Consensus pattern (32 bp):
TGTGCGAGTTGTTCAATATGCGTGCCATAGAA
Found at i:21205915 original size:18 final size:18
Alignment explanation
Indices: 21205882--21205934 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
21205872 ATTCACCTAA
*
21205882 ACCCAATCCAAACCCAAGT
1 ACCCAA-CCCAACCCAAGT
* *
21205901 ATCCAACCCAACCCAATT
1 ACCCAACCCAACCCAAGT
*
21205919 ACCCAACCTAACCCAA
1 ACCCAACCCAACCCAA
21205935 CCCAATCATA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.42, C:0.45, G:0.02, T:0.11
Consensus pattern (18 bp):
ACCCAACCCAACCCAAGT
Found at i:21206143 original size:37 final size:37
Alignment explanation
Indices: 21206102--21206176 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
21206092 TGTTAATTTC
*
21206102 AAGACTTATGTAATTTTTTTAATTATGTACTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTACTGATTCA
21206139 AAGACTTATGTAATGTTTTTAATTATGTACTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTACTGATTCA
21206176 A
1 A
21206177 TTTGGTTAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTACTGATTCA
Found at i:21206166 original size:17 final size:17
Alignment explanation
Indices: 21206107--21206167 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
21206097 ATTTCAAGAC
*
21206107 TTATGTAATTTTTTTAA
1 TTATGTAATGTTTTTAA
* ***
21206124 TTATGTACTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
21206143 CTTATGTAATGTTTTTAA
1 -TTATGTAATGTTTTTAA
21206161 TTATGTA
1 TTATGTA
21206168 CTGATTCAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 15 0.47
18 4 0.12
19 4 0.12
20 9 0.28
ACGTcount: A:0.31, C:0.05, G:0.11, T:0.52
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:21206210 original size:27 final size:27
Alignment explanation
Indices: 21206175--21206244 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
21206165 GTACTGATTC
* *
21206175 AATTTGGTTAATTCGGGTAATTC-AGGT
1 AATTCGGTTAATTCGGGTAATTCGA-CT
21206202 AATTCGGTTAATTCGGGTAATTCGACT
1 AATTCGGTTAATTCGGGTAATTCGACT
21206229 AATTCGGTTAATTCGG
1 AATTCGGTTAATTCGG
21206245 TTAACCGACC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 39 0.98
28 1 0.03
ACGTcount: A:0.26, C:0.11, G:0.24, T:0.39
Consensus pattern (27 bp):
AATTCGGTTAATTCGGGTAATTCGACT
Found at i:21206245 original size:9 final size:9
Alignment explanation
Indices: 21206175--21206248 Score: 87
Period size: 9 Copynumber: 8.2 Consensus size: 9
21206165 GTACTGATTC
*
21206175 AATTTGGTT
1 AATTCGGTT
*
21206184 AATTCGGGT
1 AATTCGGTT
21206193 AATTCAGG-T
1 AATTC-GGTT
21206202 AATTCGGTT
1 AATTCGGTT
*
21206211 AATTCGGGT
1 AATTCGGTT
**
21206220 AATTCGACT
1 AATTCGGTT
21206229 AATTCGGTT
1 AATTCGGTT
21206238 AATTCGGTT
1 AATTCGGTT
21206247 AA
1 AA
21206249 CCGACCGAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
8 2 0.04
9 52 0.93
10 2 0.04
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (9 bp):
AATTCGGTT
Found at i:21206259 original size:27 final size:27
Alignment explanation
Indices: 21206175--21206259 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
21206165 GTACTGATTC
* * *
21206175 AATTTGGTTAATTCGGGTAATTC-AGG
1 AATTCGGTTAATTCGGGTAATCCGACG
* *
21206201 TAATTCGGTTAATTCGGGTAATTCGACT
1 -AATTCGGTTAATTCGGGTAATCCGACG
*
21206229 AATTCGGTTAATTCGGTTAA-CCGACCG
1 AATTCGGTTAATTCGGGTAATCCGA-CG
21206256 AATT
1 AATT
21206260 AACCGAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.06
27 46 0.92
28 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.36
Consensus pattern (27 bp):
AATTCGGTTAATTCGGGTAATCCGACG
Found at i:21206701 original size:23 final size:23
Alignment explanation
Indices: 21206675--21206721 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
21206665 TTCTATACAT
21206675 GTACATATTTGGG-CAGCACGCAG
1 GTACATA-TTGGGACAGCACGCAG
*
21206698 GTACATATTGGGATAGCACGCAG
1 GTACATATTGGGACAGCACGCAG
21206721 G
1 G
21206722 CTTGACCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (23 bp):
GTACATATTGGGACAGCACGCAG
Found at i:21211201 original size:13 final size:13
Alignment explanation
Indices: 21211183--21211241 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
21211173 CTCAAAATTT
*
21211183 TCAAAAGTACTTC
1 TCAAAAGCACTTC
*
21211196 TCAAAAGCACTTT
1 TCAAAAGCACTTC
* *
21211209 TCCATAGCACTTC
1 TCAAAAGCACTTC
* *
21211222 TCAAAAACACTTT
1 TCAAAAGCACTTC
21211235 TCAAAAG
1 TCAAAAG
21211242 TAATGAAGAA
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:21211209 original size:26 final size:26
Alignment explanation
Indices: 21211180--21211243 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 26
21211170 ACACTCAAAA
*
21211180 TTTTCAAAAGTACTTCTCAAAAGCAC
1 TTTTCAAAAGTACTTCTCAAAAACAC
* * *
21211206 TTTTCCATAGCACTTCTCAAAAACAC
1 TTTTCAAAAGTACTTCTCAAAAACAC
21211232 TTTTCAAAAGTA
1 TTTTCAAAAGTA
21211244 ATGAAGAACT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
TTTTCAAAAGTACTTCTCAAAAACAC
Found at i:21212218 original size:22 final size:21
Alignment explanation
Indices: 21212176--21212218 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
21212166 TATCATTGAG
21212176 AGCTAAACTTTAATAAAAAAA
1 AGCTAAACTTTAATAAAAAAA
21212197 AGCTAAACTTTAATAAAAAAA
1 AGCTAAACTTTAATAAAAAAA
21212218 A
1 A
21212219 TTTACAGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.63, C:0.09, G:0.05, T:0.23
Consensus pattern (21 bp):
AGCTAAACTTTAATAAAAAAA
Found at i:21220062 original size:29 final size:28
Alignment explanation
Indices: 21220028--21220118 Score: 71
Period size: 29 Copynumber: 3.2 Consensus size: 28
21220018 TTGTTTAAAG
21220028 AAGCCCTTATACTATTTTCGTAGTTTAAT
1 AAGCCCTTATACTATTTT-GTAGTTTAAT
* ** *
21220057 AAGCCCCTAGCCTATAATTT-T--TTTAAAG
1 AAGCCCTTATACTAT--TTTGTAGTTT-AAT
*
21220085 AAGCCCTTATACTATTTTTGTAGTTAAAT
1 AAGCCCTTATACTA-TTTTGTAGTTTAAT
21220114 AAGCC
1 AAGCC
21220119 TCTAACCTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 14
0.67 0.13 0.20
Matches are distributed among these distances:
27 6 0.13
28 14 0.30
29 21 0.46
30 2 0.04
31 3 0.07
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.40
Consensus pattern (28 bp):
AAGCCCTTATACTATTTTGTAGTTTAAT
Found at i:21220109 original size:57 final size:57
Alignment explanation
Indices: 21220021--21220131 Score: 186
Period size: 57 Copynumber: 1.9 Consensus size: 57
21220011 ATACTCTTTG
* *
21220021 TTTAAAGAAGCCCTTATACTATTTTCGTAGTTTAATAAGCCCCTAGCCTATAATTTT
1 TTTAAAGAAGCCCTTATACTATTTTCGTAGTTAAATAAGCCCCTAACCTATAATTTT
* *
21220078 TTTAAAGAAGCCCTTATACTATTTTTGTAGTTAAATAAGCCTCTAACCTATAAT
1 TTTAAAGAAGCCCTTATACTATTTTCGTAGTTAAATAAGCCCCTAACCTATAAT
21220132 GTTTACCCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (57 bp):
TTTAAAGAAGCCCTTATACTATTTTCGTAGTTAAATAAGCCCCTAACCTATAATTTT
Found at i:21220643 original size:14 final size:14
Alignment explanation
Indices: 21220624--21220672 Score: 64
Period size: 14 Copynumber: 3.6 Consensus size: 14
21220614 ATAAAATCTC
21220624 AAACCCTAAACCCA
1 AAACCCTAAACCCA
* *
21220638 AAACCCAAAATCCA
1 AAACCCTAAACCCA
21220652 AAA-CCTAAACCCA
1 AAACCCTAAACCCA
*
21220665 TAACCCTA
1 AAACCCTA
21220673 TCTTTAAACC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
13 10 0.34
14 19 0.66
ACGTcount: A:0.51, C:0.39, G:0.00, T:0.10
Consensus pattern (14 bp):
AAACCCTAAACCCA
Found at i:21220647 original size:28 final size:27
Alignment explanation
Indices: 21220598--21220670 Score: 83
Period size: 28 Copynumber: 2.7 Consensus size: 27
21220588 GGTATTTTTT
* ***
21220598 ACCCTAAACCCTAAATATAAAATCTCAA
1 ACCCTAAACCCAAAACCCAAAATC-CAA
21220626 ACCCTAAACCCAAAACCCAAAATCCAA
1 ACCCTAAACCCAAAACCCAAAATCCAA
* *
21220653 AACCTAAACCCATAACCC
1 ACCCTAAACCCAAAACCC
21220671 TATCTTTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 19 0.49
28 20 0.51
ACGTcount: A:0.49, C:0.37, G:0.00, T:0.14
Consensus pattern (27 bp):
ACCCTAAACCCAAAACCCAAAATCCAA
Found at i:21220661 original size:27 final size:28
Alignment explanation
Indices: 21220616--21220670 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
21220606 CCCTAAATAT
*
21220616 AAAATCTCAAACCCTAAACCCAAAACCC
1 AAAATCTCAAAACCTAAACCCAAAACCC
*
21220644 AAAATC-CAAAACCTAAACCCATAACCC
1 AAAATCTCAAAACCTAAACCCAAAACCC
21220671 TATCTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.51, C:0.38, G:0.00, T:0.11
Consensus pattern (28 bp):
AAAATCTCAAAACCTAAACCCAAAACCC
Found at i:21220757 original size:33 final size:34
Alignment explanation
Indices: 21220720--21220793 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 34
21220710 CCTAAAATCT
*
21220720 TAAACTTAAATCC-TAAACCTCAAACCCCGAA-CC
1 TAAACTTAAA-CCTTAAACCTCAAACCCCAAACCC
* * *
21220753 TAAACTTGAACCTTAAACCTTAAATCCCAAACCC
1 TAAACTTAAACCTTAAACCTCAAACCCCAAACCC
21220787 TAAACTT
1 TAAACTT
21220794 TAGGGTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 2 0.06
33 24 0.69
34 9 0.26
ACGTcount: A:0.42, C:0.32, G:0.03, T:0.23
Consensus pattern (34 bp):
TAAACTTAAACCTTAAACCTCAAACCCCAAACCC
Found at i:21220822 original size:7 final size:7
Alignment explanation
Indices: 21220797--21220831 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
21220787 TAAACTTTAG
*
21220797 GGTTTAA
1 GGTTCAA
21220804 GGTTCAA
1 GGTTCAA
21220811 GGTTCAA
1 GGTTCAA
21220818 GGTTCAA
1 GGTTCAA
21220825 -GTTCAA
1 GGTTCAA
21220831 G
1 G
21220832 ATTTGGGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.29, C:0.11, G:0.29, T:0.31
Consensus pattern (7 bp):
GGTTCAA
Found at i:21221047 original size:17 final size:18
Alignment explanation
Indices: 21221025--21221058 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21221015 TTGTTTATAA
21221025 TTTAAA-AAATTAATTAT
1 TTTAAATAAATTAATTAT
*
21221042 TTTAAATAATTTAATTA
1 TTTAAATAAATTAATTA
21221059 AAATTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTAAATAAATTAATTAT
Found at i:21231737 original size:10 final size:11
Alignment explanation
Indices: 21231688--21231736 Score: 62
Period size: 11 Copynumber: 4.4 Consensus size: 11
21231678 TAAACACCAA
21231688 AAAAATATTTT
1 AAAAATATTTT
***
21231699 AAAAATAAAAAT
1 AAAAAT-ATTTT
21231711 AAAAATATTTT
1 AAAAATATTTT
21231722 AAAAATATTTT
1 AAAAATATTTT
21231733 AAAA
1 AAAA
21231737 TTAAAAAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
11 23 0.74
12 8 0.26
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:21233058 original size:10 final size:9
Alignment explanation
Indices: 21233033--21233249 Score: 68
Period size: 10 Copynumber: 22.2 Consensus size: 9
21233023 AAAGAAGAAG
*
21233033 ATAAAAATCA
1 ATAAAAAT-T
*
21233043 ATAAAAGTT
1 ATAAAAATT
21233052 ATAAAAATT
1 ATAAAAATT
**
21233061 ATTAAATTTT
1 A-TAAAAATT
*
21233071 AATAAAAAAT
1 -ATAAAAATT
21233081 ATAAAAA-T
1 ATAAAAATT
21233089 ATCAAAAATCGT
1 AT-AAAAAT--T
*
21233101 AAAAAAATT
1 ATAAAAATT
21233110 ATAAAAAATT
1 AT-AAAAATT
* *
21233120 GTAAAATTTT
1 ATAAAA-ATT
21233130 ATAAAAATCGT
1 ATAAAAAT--T
*
21233141 AAAATAAATT
1 ATAA-AAATT
21233151 -TATAAAATAT
1 ATA-AAAAT-T
*
21233161 ATAGAAA-T
1 ATAAAAATT
21233169 ATAGAAAAGTT
1 ATA-AAAA-TT
*
21233180 -TATAAATT
1 ATAAAAATT
21233188 CATAAGAAAATT
1 -AT-A-AAAATT
21233200 ATAGAAAATCT
1 ATA-AAAAT-T
21233211 A-AAGAAA-T
1 ATAA-AAATT
*
21233219 ATAAAACTT
1 ATAAAAATT
*
21233228 GTAATAAAATT
1 AT-A-AAAATT
21233239 ATAAAAATT
1 ATAAAAATT
21233248 AT
1 AT
21233250 CGTACCAAAA
Statistics
Matches: 156, Mismatches: 24, Indels: 55
0.66 0.10 0.23
Matches are distributed among these distances:
8 13 0.08
9 52 0.33
10 55 0.35
11 25 0.16
12 11 0.07
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.31
Consensus pattern (9 bp):
ATAAAAATT
Found at i:21233108 original size:20 final size:19
Alignment explanation
Indices: 21233083--21233149 Score: 62
Period size: 21 Copynumber: 3.3 Consensus size: 19
21233073 TAAAAAATAT
21233083 AAAAATATCAAAAATCGTAA
1 AAAAATAT-AAAAATCGTAA
*
21233103 AAAAATTATAAAAAATTGTAA
1 AAAAA-TAT-AAAAATCGTAA
***
21233124 AATTTTATAAAAATCGTAA
1 AAAAATATAAAAATCGTAA
21233143 AATAAAT
1 AA-AAAT
21233150 TTATAAAATA
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
19 12 0.33
20 9 0.25
21 15 0.42
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.28
Consensus pattern (19 bp):
AAAAATATAAAAATCGTAA
Found at i:21233145 original size:19 final size:20
Alignment explanation
Indices: 21233072--21233146 Score: 68
Period size: 19 Copynumber: 3.9 Consensus size: 20
21233062 TTAAATTTTA
*
21233072 ATAAAAAAT-ATAAAA-A-T
1 ATAAAAAATCGTAAAATATT
* *
21233089 ATCAAAAATCGTAAAAAAATT
1 ATAAAAAATCGT-AAAATATT
* *
21233110 ATAAAAAATTGTAAAATTTT
1 ATAAAAAATCGTAAAATATT
21233130 AT-AAAAATCGTAAAATA
1 ATAAAAAATCGTAAAATA
21233147 AATTTATAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
17 8 0.17
18 1 0.02
19 17 0.37
20 9 0.20
21 11 0.24
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (20 bp):
ATAAAAAATCGTAAAATATT
Found at i:21233181 original size:29 final size:31
Alignment explanation
Indices: 21233149--21233207 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
21233139 GTAAAATAAA
21233149 TTTATAAAAT-ATATAG-AAA-TATAGAAAAG
1 TTTATAAAATCATA-AGAAAATTATAGAAAAG
*
21233178 TTTATAAATTCATAAGAAAATTATAGAAAA
1 TTTATAAAATCATAAGAAAATTATAGAAAA
21233208 TCTAAAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 11 0.42
30 6 0.23
31 9 0.35
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (31 bp):
TTTATAAAATCATAAGAAAATTATAGAAAAG
Found at i:21245472 original size:28 final size:28
Alignment explanation
Indices: 21245431--21245498 Score: 93
Period size: 28 Copynumber: 2.5 Consensus size: 28
21245421 GCGAAGTGTC
21245431 AAGT-GCAAGATGCAAGCTGACTCCACA
1 AAGTGGCAAGATGCAAGCTGACTCCACA
* **
21245458 AAGTGGCAAGGTGCAAGCTGACTCTGCA
1 AAGTGGCAAGATGCAAGCTGACTCCACA
*
21245486 AAGAGGCAAGATG
1 AAGTGGCAAGATG
21245499 TGAGATGGCA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
27 4 0.11
28 31 0.89
ACGTcount: A:0.35, C:0.21, G:0.29, T:0.15
Consensus pattern (28 bp):
AAGTGGCAAGATGCAAGCTGACTCCACA
Found at i:21245518 original size:56 final size:56
Alignment explanation
Indices: 21245458--21245647 Score: 263
Period size: 56 Copynumber: 3.2 Consensus size: 56
21245448 TGACTCCACA
* * *
21245458 AAGTGGCAAGGTGCAAGCTGACTCTGCAAAGAGGCAAGATGTGAGATGGCACCGCG
1 AAGTGGCAGGGTGCAAGCTGACTCTGTAAAGAGGCAAGATGCGAGATGGCACCGCG
*
21245514 AAGTGGCAGGGTGTGAGCTGACGAGCTGACTTTGTAAAGAGGCAAGATGCGAGATGGCACCGCG
1 AAGTGGCA-GG-GT--GC--A--AGCTGACTCTGTAAAGAGGCAAGATGCGAGATGGCACCGCG
*
21245578 AAGTGGCAGGGTGCGAGCTGACTCTGTAAAGAGGCAAGATGCGAGATGGCACCGCG
1 AAGTGGCAGGGTGCAAGCTGACTCTGTAAAGAGGCAAGATGCGAGATGGCACCGCG
21245634 AAGTGGCAGGGTGC
1 AAGTGGCAGGGTGC
21245648 GAACTGCAGC
Statistics
Matches: 120, Mismatches: 6, Indels: 16
0.85 0.04 0.11
Matches are distributed among these distances:
56 62 0.52
57 1 0.01
58 2 0.02
60 4 0.03
62 3 0.03
63 2 0.02
64 46 0.38
ACGTcount: A:0.27, C:0.18, G:0.39, T:0.15
Consensus pattern (56 bp):
AAGTGGCAGGGTGCAAGCTGACTCTGTAAAGAGGCAAGATGCGAGATGGCACCGCG
Found at i:21245592 original size:28 final size:28
Alignment explanation
Indices: 21245561--21245649 Score: 97
Period size: 28 Copynumber: 3.2 Consensus size: 28
21245551 AGAGGCAAGA
21245561 TGCGAGATGGCACCGCGAAGTGGCAGGG
1 TGCGAGATGGCACCGCGAAGTGGCAGGG
* * * * ** * * *
21245589 TGCGAGCTGACTCTGTAAAGAGGCAAGA
1 TGCGAGATGGCACCGCGAAGTGGCAGGG
21245617 TGCGAGATGGCACCGCGAAGTGGCAGGG
1 TGCGAGATGGCACCGCGAAGTGGCAGGG
21245645 TGCGA
1 TGCGA
21245650 ACTGCAGCTG
Statistics
Matches: 43, Mismatches: 18, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.25, C:0.20, G:0.42, T:0.13
Consensus pattern (28 bp):
TGCGAGATGGCACCGCGAAGTGGCAGGG
Found at i:21256994 original size:6 final size:6
Alignment explanation
Indices: 21256975--21257011 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
21256965 TAGGTTTCCT
* *
21256975 TATCTG TATCTA TATTTA TATCTA TATCTA TATCTA T
1 TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA T
21257012 GGTTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.30, C:0.14, G:0.03, T:0.54
Consensus pattern (6 bp):
TATCTA
Found at i:21258482 original size:27 final size:27
Alignment explanation
Indices: 21258426--21258482 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
21258416 TTTTATTTCG
* *
21258426 ATTTAGTTATTTTTTTAATCTTTTATT
1 ATTTAGTTATTTTTTTAATCTATTAAT
21258453 ATTTAGTTAATTATTTTTAA-C-ATTAAT
1 ATTTAGTT-ATT-TTTTTAATCTATTAAT
21258480 ATT
1 ATT
21258483 ATTATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
27 15 0.58
28 4 0.15
29 7 0.27
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (27 bp):
ATTTAGTTATTTTTTTAATCTATTAAT
Found at i:21265005 original size:29 final size:29
Alignment explanation
Indices: 21264973--21265032 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 29
21264963 CAGTCAGGCG
*
21264973 CCTAAACTTTCCAAAAATTACATTTTTGC
1 CCTAAACTTTCCAAAAATCACATTTTTGC
* * * * *
21265002 CCTATATTTTCCTAACATCGCATTTTTGC
1 CCTAAACTTTCCAAAAATCACATTTTTGC
21265031 CC
1 CC
21265033 CAGAAACTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.27, C:0.28, G:0.05, T:0.40
Consensus pattern (29 bp):
CCTAAACTTTCCAAAAATCACATTTTTGC
Found at i:21265478 original size:19 final size:19
Alignment explanation
Indices: 21265454--21265492 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
21265444 AAAAGTAGTG
21265454 GCCAAGAATCAAGTTTTGA
1 GCCAAGAATCAAGTTTTGA
21265473 GCCAAGAATCAAGTTTTGA
1 GCCAAGAATCAAGTTTTGA
21265492 G
1 G
21265493 GAGGGAAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (19 bp):
GCCAAGAATCAAGTTTTGA
Found at i:21268143 original size:20 final size:20
Alignment explanation
Indices: 21268105--21268160 Score: 89
Period size: 19 Copynumber: 2.9 Consensus size: 20
21268095 NNNNNNNAAT
21268105 ATTCTCGTATTTC-AAAAAA
1 ATTCTCGTATTTCAAAAAAA
*
21268124 ATTC-CGTATTTTAAAAAAA
1 ATTCTCGTATTTCAAAAAAA
21268143 ATTCTCGTATTTCAAAAA
1 ATTCTCGTATTTCAAAAA
21268161 TTGTCATGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 7 0.21
19 14 0.42
20 12 0.36
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.38
Consensus pattern (20 bp):
ATTCTCGTATTTCAAAAAAA
Found at i:21268241 original size:51 final size:52
Alignment explanation
Indices: 21268173--21268270 Score: 139
Period size: 52 Copynumber: 1.9 Consensus size: 52
21268163 GTCATGTTTA
*
21268173 GAAAAAAATTTGTCGTGTTTT-TAAAATCTTC-GTGTTTTCAAAAATTCCGAC
1 GAAAAAAATTTGTCGTGTTTTCTAAAAACTTCTGT-TTTTCAAAAATTCCGAC
*
21268224 GAAAAAAATTT-TCCGTGTTTTCTAAAAACTTCTGTTTTTCATAAATT
1 GAAAAAAATTTGT-CGTGTTTTCTAAAAACTTCTGTTTTTCAAAAATT
21268271 TTCGTGTTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
50 1 0.02
51 19 0.45
52 20 0.48
53 2 0.05
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (52 bp):
GAAAAAAATTTGTCGTGTTTTCTAAAAACTTCTGTTTTTCAAAAATTCCGAC
Found at i:21268263 original size:52 final size:51
Alignment explanation
Indices: 21268173--21268270 Score: 137
Period size: 51 Copynumber: 1.9 Consensus size: 51
21268163 GTCATGTTTA
*
21268173 GAAAAAAATTTGTCGTGTTTTTAAAATCTTCGTGTTTTCAAAAATTCCGAC
1 GAAAAAAATTTGTCGTGTTTTTAAAAACTTCGTGTTTTCAAAAATTCCGAC
*
21268224 GAAAAAAATTT-TCCGTGTTTTCTAAAAACTTC-TGTTTTTCATAAATT
1 GAAAAAAATTTGT-CGTGTTTT-TAAAAACTTCGTG-TTTTCAAAAATT
21268271 TTCGTGTTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
50 1 0.02
51 21 0.50
52 20 0.48
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (51 bp):
GAAAAAAATTTGTCGTGTTTTTAAAAACTTCGTGTTTTCAAAAATTCCGAC
Found at i:21268309 original size:36 final size:34
Alignment explanation
Indices: 21268195--21268360 Score: 156
Period size: 36 Copynumber: 4.7 Consensus size: 34
21268185 TCGTGTTTTT
* * *
21268195 AAAATCTTCGTGTTTTCAAAAATTCCGACGA-AA
1 AAAATTTTCGTGTTTTCAAAAATTCCGATGATCA
* * **
21268228 AAAATTTTCCGTGTTTTCTAAAAACTTCTGTTTTTCA
1 AAAATTTT-CGTGTTTTC-AAAAA-TTCCGATGATCA
* *
21268265 TAAATTTTCGTGTTCTCAAAAATTCCGATGATCAA
1 AAAATTTTCGTGTTTTCAAAAATTCCGATGATC-A
*
21268300 AAAATTTTTCGTGTTTTCTAAAAACTTCCG-TGTTTCA
1 AAAA-TTTTCGTGTTTTC-AAAAA-TTCCGATG-ATCA
21268337 AAAATTTTCGTGTTTTCAAAAATT
1 AAAATTTTCGTGTTTTCAAAAATT
21268361 TTCGTGATTT
Statistics
Matches: 108, Mismatches: 16, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
33 7 0.06
34 18 0.17
35 19 0.18
36 37 0.34
37 20 0.19
38 7 0.06
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.42
Consensus pattern (34 bp):
AAAATTTTCGTGTTTTCAAAAATTCCGATGATCA
Found at i:21268313 original size:72 final size:69
Alignment explanation
Indices: 21268188--21268360 Score: 249
Period size: 72 Copynumber: 2.5 Consensus size: 69
21268178 AAATTTGTCG
*
21268188 TGTTTTT-AAAATCTTCGTGTTTTCAAAAATTCCGACGAAAAAAATTTTCCGTGTTTTCTAAAAA
1 TGTTTTTCAAAATTTTCGTGTTTTCAAAAATTCCGACGAAAAAAATTTTCCGTGTTTTCTAAAAA
21268252 CTTC
66 CTTC
* * *
21268256 TGTTTTTCATAAATTTTCGTGTTCTCAAAAATTCCGATGATCAAAAAATTTTTCGTGTTTTCTAA
1 TGTTTTTCA-AAATTTTCGTGTTTTCAAAAATTCCGACGA--AAAAAATTTTCCGTGTTTTCTAA
21268321 AAACTTC
63 AAACTTC
* *
21268328 CGTGTTTCAAAAATTTTCGTGTTTTCAAAAATT
1 TGTTTTTC-AAAATTTTCGTGTTTTCAAAAATT
21268361 TTCGTGATTT
Statistics
Matches: 93, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
68 7 0.08
69 1 0.01
70 27 0.29
72 57 0.61
73 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.43
Consensus pattern (69 bp):
TGTTTTTCAAAATTTTCGTGTTTTCAAAAATTCCGACGAAAAAAATTTTCCGTGTTTTCTAAAAA
CTTC
Found at i:21268384 original size:36 final size:35
Alignment explanation
Indices: 21268227--21268513 Score: 147
Period size: 36 Copynumber: 8.0 Consensus size: 35
21268217 TTCCGACGAA
* * *
21268227 AAAAATTTTCCGTGTTTTCTAAAAA-CTTCTGTTTTTC
1 AAAAATTCT-CGTGTTTTC-AAAAATTTTC-GTGTTTC
* * * * *
21268264 ATAAATTTTCGTGTTCTCAAAAA-TTCCGATG-ATC
1 AAAAATTCTCGTGTTTTCAAAAATTTTCG-TGTTTC
* * *
21268298 AAAAAATTTTTCGTGTTTTCTAAAAACTTCCGTGTTTC
1 -AAAAA-TTCTCGTGTTTTC-AAAAATTTTCGTGTTTC
* *
21268336 AAAAATTTTCGTGTTTTCAAAAATTTTCGTGATTTT
1 AAAAATTCTCGTGTTTTCAAAAATTTTCGTG-TTTC
* * * *
21268372 AACAATTCTCGTG-TTTCATAAATATTCGCGTTTC
1 AAAAATTCTCGTGTTTTCAAAAATTTTCGTGTTTC
** * *
21268406 AAAAA-AATCGTGTTTTCAAAAAAAAATTCTCGTATTTC
1 AAAAATTCTCGTGTTTTC----AAAAATTTTCGTGTTTC
* * *
21268444 AAAAATTTTTGTG-TTTCAAAAATTTTCGTGTTTTT
1 AAAAATTCTCGTGTTTTCAAAAATTTTCGTG-TTTC
* * *
21268479 AAGAAATTGC-CGTGTCTTCAAAAATTCTAGTGTTT
1 AA-AAATT-CTCGTGTTTTCAAAAATTTTCGTGTTT
21268514 TTTTAAACAA
Statistics
Matches: 196, Mismatches: 37, Indels: 35
0.73 0.14 0.13
Matches are distributed among these distances:
33 5 0.03
34 25 0.13
35 42 0.21
36 58 0.30
37 34 0.17
38 28 0.14
39 4 0.02
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (35 bp):
AAAAATTCTCGTGTTTTCAAAAATTTTCGTGTTTC
Found at i:21268464 original size:16 final size:17
Alignment explanation
Indices: 21268227--21268504 Score: 159
Period size: 17 Copynumber: 15.4 Consensus size: 17
21268217 TTCCGACGAA
21268227 AAAAATTTTCCGTGTTTTC
1 AAAAATTTT-CGTG-TTTC
* *
21268246 TAAAAA-CTTCTGTTTTTC
1 -AAAAATTTTC-GTGTTTC
*
21268264 ATAAATTTTCGTGTTCTC
1 AAAAATTTTCGTGTT-TC
* *
21268282 AAAAA-TTCCGATG-ATC
1 AAAAATTTTCG-TGTTTC
21268298 AAAAAATTTTTCGTGTTTTC
1 -AAAAA-TTTTCGTG-TTTC
* *
21268318 TAAAAACTTCCGTGTTTC
1 -AAAAATTTTCGTGTTTC
21268336 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
*
21268354 AAAAATTTTCGTGATTTT
1 AAAAATTTTCGTG-TTTC
* *
21268372 AACAATTCTCGTGTTTC
1 AAAAATTTTCGTGTTTC
* * *
21268389 ATAAATATTCGCGTTTC
1 AAAAATTTTCGTGTTTC
**
21268406 AAAAA-AATCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
* *
21268423 AAAAAAAAATTCTCGTATTTC
1 ----AAAAATTTTCGTGTTTC
*
21268444 AAAAATTTTTGTGTTTC
1 AAAAATTTTCGTGTTTC
*
21268461 AAAAATTTTCGTGTTTTT
1 AAAAATTTTCGTG-TTTC
**
21268479 AAGAAATTGCCGTGTCTTC
1 AA-AAATTTTCGTGT-TTC
21268498 AAAAATT
1 AAAAATT
21268505 CTAGTGTTTT
Statistics
Matches: 200, Mismatches: 39, Indels: 40
0.72 0.14 0.14
Matches are distributed among these distances:
16 7 0.04
17 77 0.38
18 64 0.32
19 27 0.14
20 12 0.06
21 9 0.05
22 4 0.02
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (17 bp):
AAAAATTTTCGTGTTTC
Found at i:21274269 original size:12 final size:12
Alignment explanation
Indices: 21274252--21274294 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
21274242 AAAACAAAAC
21274252 AAAGAAAAGAAA
1 AAAGAAAAGAAA
21274264 AAAGAAAA-AAA
1 AAAGAAAAGAAA
21274275 CAAAGAAAAG-AA
1 -AAAGAAAAGAAA
21274287 AAAGAAAA
1 AAAGAAAA
21274295 ATCAAGATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
11 11 0.38
12 18 0.62
ACGTcount: A:0.84, C:0.02, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAGAAAAGAAA
Found at i:21274272 original size:29 final size:28
Alignment explanation
Indices: 21274214--21274295 Score: 91
Period size: 29 Copynumber: 3.0 Consensus size: 28
21274204 TATTATGCCT
* *
21274214 AAAAAAACAAAAC-AA-AAAAG-GAACA
1 AAAAAAACAAAACAAAGAAAAGAAAAAA
21274239 AAAAAAACAAAACAAAGAAAAGAAAAAA
1 AAAAAAACAAAACAAAGAAAAGAAAAAA
21274267 GAAAAAAACAAAGA-AAAGAAAAAGAAAAA
1 -AAAAAAACAAA-ACAAAG-AAAAGAAAAA
21274296 TCAAGATGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
25 13 0.27
26 2 0.04
27 5 0.10
28 3 0.06
29 15 0.31
30 11 0.22
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (28 bp):
AAAAAAACAAAACAAAGAAAAGAAAAAA
Found at i:21274295 original size:24 final size:24
Alignment explanation
Indices: 21274214--21274294 Score: 103
Period size: 24 Copynumber: 3.3 Consensus size: 24
21274204 TATTATGCCT
*
21274214 AAAAAAACAAAACAAA-AAAGGAACA
1 AAAAAAACAAAACAAAGAAAAG-A-A
21274239 AAAAAAACAAAACAAAGAAAAGAA
1 AAAAAAACAAAACAAAGAAAAGAA
21274263 AAAAGAAA-AAAACAAAGAAAAGAA
1 AAAA-AAACAAAACAAAGAAAAGAA
21274287 AAAGAAAA
1 AAA-AAAA
21274295 ATCAAGATGA
Statistics
Matches: 52, Mismatches: 1, Indels: 7
0.87 0.02 0.12
Matches are distributed among these distances:
24 27 0.52
25 21 0.40
26 4 0.08
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (24 bp):
AAAAAAACAAAACAAAGAAAAGAA
Found at i:21277710 original size:76 final size:76
Alignment explanation
Indices: 21277516--21277946 Score: 577
Period size: 76 Copynumber: 5.6 Consensus size: 76
21277506 NNNNNNTGCT
* * * *
21277516 TTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTAAACCTCGGGTCACGCTGAGGTATTT-T
1 TTTTTC-AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCT
21277580 TTTAATTTAATTTCCG
65 TTT-A---AATTTCCG
21277596 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
21277661 TTAAATTTCCG
66 TTAAATTTCCG
* * *
21277672 TTTTTCAAAAAGCAACTCATAATACAGAGGTGAGTTGAGCCTTGGGTCATGCCGATGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
21277737 TTAAATTTCCG
66 TTAAATTTCCG
*
21277748 TTTTTCAAAAATCAACTTATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
*
21277813 TTAAATTTTCG
66 TTAAATTTCCG
* * *
21277824 TTTTTCAAAAATCAACTCATAATATAGAGGTGAGTTGAGCCTCGGGGCACATGTCGAGGTATTTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTC-GGG-TCATGCCGAGGTA-TTT
**
21277889 CGATT---TTT--G
63 CTTTTAAATTTCCG
* * * *
21277898 TTTTTCGAAGATCAACTCATAATCCAAGAGGTGAGTTGAGTCTCGGGTC
1 TTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTC
21277947 GCACGCCGAG
Statistics
Matches: 322, Mismatches: 24, Indels: 17
0.89 0.07 0.05
Matches are distributed among these distances:
73 1 0.00
74 25 0.08
75 17 0.05
76 196 0.61
77 3 0.01
78 11 0.03
79 59 0.18
80 10 0.03
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (76 bp):
TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
TTAAATTTCCG
Found at i:21278185 original size:29 final size:30
Alignment explanation
Indices: 21278160--21278218 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
21278150 AACCCCTGTA
21278160 CTTTTCAAAATTTACATTTTGACCCTAAAC
1 CTTTTCAAAATTTACATTTTGACCCTAAAC
*
21278190 CTTTTTAAAATTTACATTTTGACCCTAAA
1 CTTTTCAAAATTTACATTTTGACCCTAAA
21278219 ATTTTCTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.42
Consensus pattern (30 bp):
CTTTTCAAAATTTACATTTTGACCCTAAAC
Found at i:21278235 original size:30 final size:30
Alignment explanation
Indices: 21278161--21278232 Score: 99
Period size: 30 Copynumber: 2.4 Consensus size: 30
21278151 ACCCCTGTAC
* **
21278161 TTTTCAAAATTTACATTTTGACCCTAAACC
1 TTTTTAAAATTTACATTTTGACCCTAAAAT
21278191 TTTTTAAAATTTACATTTTGACCCTAAAAT
1 TTTTTAAAATTTACATTTTGACCCTAAAAT
*
21278221 TTTCTTTAAATT
1 TTT-TTAAAATT
21278233 ACACTTTAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 30 0.81
31 7 0.19
ACGTcount: A:0.33, C:0.17, G:0.03, T:0.47
Consensus pattern (30 bp):
TTTTTAAAATTTACATTTTGACCCTAAAAT
Found at i:21278777 original size:19 final size:19
Alignment explanation
Indices: 21278753--21278791 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
21278743 AAAAGTAGTG
21278753 GCCAAGAATCAAGTTTTGA
1 GCCAAGAATCAAGTTTTGA
21278772 GCCAAGAATCAAGTTTTGA
1 GCCAAGAATCAAGTTTTGA
21278791 G
1 G
21278792 GAGGGAAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (19 bp):
GCCAAGAATCAAGTTTTGA
Found at i:21279463 original size:16 final size:17
Alignment explanation
Indices: 21279422--21279464 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
21279412 TTTTCAAGAG
*
21279422 TTTTCGTGTTTTACAAA
1 TTTTAGTGTTTTACAAA
*
21279439 TGTTAGTGTTTTA-AAA
1 TTTTAGTGTTTTACAAA
*
21279455 TTTTTGTGTT
1 TTTTAGTGTT
21279465 AAAAAAATCT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.21, C:0.05, G:0.16, T:0.58
Consensus pattern (17 bp):
TTTTAGTGTTTTACAAA
Found at i:21279507 original size:17 final size:17
Alignment explanation
Indices: 21279482--21279544 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 17
21279472 TCTTCTCGTA
*
21279482 TTTCGAAAATTGTCGTGT
1 TTTCAAAAATT-TCGTGT
*
21279500 TTTCAAAATTTTCGTG-
1 TTTCAAAAATTTCGTGT
*
21279516 TTTCAAAAATTTCTATGT
1 TTTCAAAAATTTC-GTGT
21279534 TTTCAAAAATT
1 TTTCAAAAATT
21279545 CTCGCATTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
16 12 0.31
17 7 0.18
18 20 0.51
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (17 bp):
TTTCAAAAATTTCGTGT
Found at i:21279947 original size:18 final size:18
Alignment explanation
Indices: 21279926--21280266 Score: 188
Period size: 18 Copynumber: 18.9 Consensus size: 18
21279916 ATGTTTAGAA
21279926 AAAAATTTGTCGTG-TTTC
1 AAAAATTT-TCGTGTTTTC
*
21279944 AAAAATCTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
* * **
21279962 AAAAA-TTCCGACG---AA
1 AAAAATTTTCG-TGTTTTC
21279977 AAAAAGTTTTCGTGTTTTC
1 AAAAA-TTTTCGTGTTTTC
*
21279996 TAAAAA-CTTC-TGTTTTTC
1 -AAAAATTTTCGTG-TTTTC
* *
21280014 ATAAATTTTCGTGTTCTC
1 AAAAATTTTCGTGTTTTC
* ****
21280032 AAAAA-TTCCGATGATCAAA
1 AAAAATTTTCG-TG-TTTTC
21280051 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
*
21280069 TAAAAA-CTTCGATG-TTTC
1 -AAAAATTTTCG-TGTTTTC
21280087 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
*
21280105 AAAAATTTTCGTGATTTC
1 AAAAATTTTCGTGTTTTC
* *
21280123 AACAATTCTCGTG-TTTC
1 AAAAATTTTCGTGTTTTC
* *
21280140 ATAAATTTTCGCG-TTTC
1 AAAAATTTTCGTGTTTTC
***
21280157 AAAAAAAATCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
* *
21280175 AAAAAAAAATTCTCGT-ATTTC
1 ----AAAAATTTTCGTGTTTTC
*
21280196 AAAAATTTTTGTG-TTTC
1 AAAAATTTTCGTGTTTTC
*
21280213 AAAAATTTTCGTGTTTTT
1 AAAAATTTTCGTGTTTTC
** *
21280231 AATAAATTGCCGTGTCTTC
1 AA-AAATTTTCGTGTTTTC
*
21280250 AAAAATTCTCGTGTTTT
1 AAAAATTTTCGTGTTTT
21280267 TTTTAAACAA
Statistics
Matches: 243, Mismatches: 54, Indels: 52
0.70 0.15 0.15
Matches are distributed among these distances:
15 5 0.02
16 1 0.00
17 80 0.33
18 104 0.43
19 31 0.13
20 9 0.04
21 4 0.02
22 9 0.04
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.42
Consensus pattern (18 bp):
AAAAATTTTCGTGTTTTC
Found at i:21279993 original size:51 final size:52
Alignment explanation
Indices: 21279923--21280020 Score: 132
Period size: 52 Copynumber: 1.9 Consensus size: 52
21279913 GTCATGTTTA
21279923 GAAAAAAATTTGTCGTG-TTTC-AAAAATCTTC-GTGTTTTCAAAAATTCCGAC
1 GAAAAAAATTTGTCGTGTTTTCTAAAAA-CTTCTGT-TTTTCAAAAATTCCGAC
*
21279974 GAAAAAAAGTTT-TCGTGTTTTCTAAAAACTTCTGTTTTTCATAAATT
1 GAAAAAAA-TTTGTCGTGTTTTCTAAAAACTTCTGTTTTTCAAAAATT
21280021 TTCGTGTTCT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
51 13 0.31
52 22 0.52
53 7 0.17
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (52 bp):
GAAAAAAATTTGTCGTGTTTTCTAAAAACTTCTGTTTTTCAAAAATTCCGAC
Found at i:21280001 original size:73 final size:73
Alignment explanation
Indices: 21279925--21280111 Score: 226
Period size: 73 Copynumber: 2.6 Consensus size: 73
21279915 CATGTTTAGA
* *
21279925 AAAAAATTTGTCGTGTTTCAAAAATCTTCGTGTTTTCAAAAATTCCGACG-AAAAAAAGTTTTCG
1 AAAAAATTTGTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTCCGACGAAAAAAAAATTTTCG
21279989 TGTTTTCT
66 TGTTTTCT
* * * *
21279997 AAAAACTTCTGT--T-TTTCATAAATTTTCGTGTTCTCAAAAATTCCGATGATCAAAAAAAATTT
1 AAAAAATT-TGTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTCCGACGA--AAAAAAAATTT
21280059 TCGTGTTTTCT
63 TCGTGTTTTCT
*
21280070 -AAAAA-CT-TCGATGTTTCAAAAATTTTCGTGTTTTCAAAAATT
1 AAAAAATTTGTCG-TGTTTCAAAAATTTTCGTGTTTTCAAAAATT
21280112 TTCGTGATTT
Statistics
Matches: 97, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
69 1 0.01
70 32 0.33
71 1 0.01
72 12 0.12
73 51 0.53
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (73 bp):
AAAAAATTTGTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTCCGACGAAAAAAAAATTTTCG
TGTTTTCT
Found at i:21280164 original size:73 final size:70
Alignment explanation
Indices: 21280051--21280228 Score: 171
Period size: 73 Copynumber: 2.5 Consensus size: 70
21280041 GATGATCAAA
* * * *** *
21280051 AAAAATTTTCGTGTTTTCTAAAAA-CTTCGATGTTTCAAAAATTTTCGTGTTTTC-AAAAATTTT
1 AAAAATTCTCGTG-TTTC-AAAAATTTTCG-CGTTTCAAAAAAAATCGTGTTTTCAAAAAATTCT
21280114 CGTGATTTC
63 CGT-ATTTC
* *
21280123 AACAATTCTCGTGTTTCATAAATTTTCGCGTTTCAAAAAAAATCGTGTTTTCAAAAAAAAATTCT
1 AAAAATTCTCGTGTTTCAAAAATTTTCGCGTTTCAAAAAAAATCGTGTTTTC---AAAAAATTCT
21280188 CGTATTTC
63 CGTATTTC
* * *
21280196 AAAAATTTTTGTGTTTCAAAAATTTTCGTGTTT
1 AAAAATTCTCGTGTTTCAAAAATTTTCGCGTTT
21280229 TTAATAAATT
Statistics
Matches: 87, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
70 24 0.28
71 8 0.09
72 11 0.13
73 33 0.38
74 11 0.13
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.44
Consensus pattern (70 bp):
AAAAATTCTCGTGTTTCAAAAATTTTCGCGTTTCAAAAAAAATCGTGTTTTCAAAAAATTCTCGT
ATTTC
Found at i:21280169 original size:34 final size:35
Alignment explanation
Indices: 21280095--21280179 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 35
21280085 TCAAAAATTT
* * ***
21280095 TCGTGTTTTCAAAAATTTTCGTGATTTCAACAATTC
1 TCGTG-TTTCAAAAATTTTCGCGATTTCAAAAAAAA
*
21280131 TCGTGTTTCATAAATTTTCGCG-TTTCAAAAAAAA
1 TCGTGTTTCAAAAATTTTCGCGATTTCAAAAAAAA
21280165 TCGTGTTTTCAAAAA
1 TCGTG-TTTCAAAAA
21280180 AAAATTCTCG
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
34 13 0.32
35 23 0.56
36 5 0.12
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (35 bp):
TCGTGTTTCAAAAATTTTCGCGATTTCAAAAAAAA
Found at i:21280216 original size:16 final size:17
Alignment explanation
Indices: 21279807--21280265 Score: 185
Period size: 18 Copynumber: 25.2 Consensus size: 17
21279797 TTTTCGCGTT
21279807 TTTCAAATAATTTTCGTG
1 TTTCAAA-AATTTTCGTG
21279825 TTCTCAAAAAATTTATTTTCGTG
1 TT-TC--AAAA---ATTTTCGTG
* * * *
21279848 TTTCTAATATTCTCGTA
1 TTTCAAAAATTTTCGTG
* * *
21279865 TTTCAAAAAAATTCCGTAT
1 TTTC-AAAAATTTTCGT-G
* * *
21279884 TTTAAAAAAATTCTCGTA
1 TTT-CAAAAATTTTCGTG
* *
21279902 TTTCAAAAATTGTCATG
1 TTTCAAAAATTTTCGTG
*
21279919 TTTAGAAAAAAATTTGTCGTG
1 TTT---CAAAAATTT-TCGTG
*
21279940 TTTCAAAAATCTTCGTG
1 TTTCAAAAATTTTCGTG
* *
21279957 TTTTCAAAAA-TTCCGACG
1 -TTTCAAAAATTTTCG-TG
**
21279975 --AAAAAAAGTTTTCGTG
1 TTTCAAAAA-TTTTCGTG
* *
21279991 TTTTCTAAAAA-CTTCTGTT
1 -TTTC-AAAAATTTTC-GTG
*
21280010 TTTCATAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
*
21280027 TTCTCAAAAA-TTCCGATG
1 TT-TCAAAAATTTTCG-TG
*
21280045 -ATCAAAAAAAATTTTCGTG
1 TTTC---AAAAATTTTCGTG
*
21280064 TTTTCTAAAAA-CTTCGATG
1 -TTTC-AAAAATTTTCG-TG
21280083 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
21280100 TTTTCAAAAATTTTCGTG
1 -TTTCAAAAATTTTCGTG
* *
21280118 ATTTCAACAATTCTCGTG
1 -TTTCAAAAATTTTCGTG
* *
21280136 TTTCATAAATTTTCGCG
1 TTTCAAAAATTTTCGTG
***
21280153 TTTCAAAAAAAATCGTG
1 TTTCAAAAATTTTCGTG
* *
21280170 TTTTCAAAAAAAAATTCTCGTA
1 -TTTC----AAAAATTTTCGTG
*
21280192 TTTCAAAAATTTTTGTG
1 TTTCAAAAATTTTCGTG
21280209 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* **
21280226 TTTTTAATAAATTGCCGTG
1 -TTTCAA-AAATTTTCGTG
*
21280245 TCTTCAAAAATTCTCGTG
1 T-TTCAAAAATTTTCGTG
21280263 TTT
1 TTT
21280266 TTTTTAAACA
Statistics
Matches: 327, Mismatches: 72, Indels: 85
0.68 0.15 0.18
Matches are distributed among these distances:
15 5 0.02
16 3 0.01
17 108 0.33
18 111 0.34
19 43 0.13
20 19 0.06
21 16 0.05
22 11 0.03
23 11 0.03
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.43
Consensus pattern (17 bp):
TTTCAAAAATTTTCGTG
Found at i:21280254 original size:73 final size:71
Alignment explanation
Indices: 21280051--21280262 Score: 162
Period size: 73 Copynumber: 2.9 Consensus size: 71
21280041 GATGATCAAA
* * * *** * *
21280051 AAAAATTTTCGTGTTTTCTAAAAA-CTTCGATGTTTCAAAAATTTTCGTGTTTTC-AAAAATTTT
1 AAAAATTCTCGTG-TTTC-AAAAATTTTCG-CGTTTCAAAAAAAATCGTGTCTTCAAAAAATTCT
21280114 CGTGATTTC
63 CGTGATTTC
* * *
21280123 AACAATTCTCGTGTTTCATAAATTTTCGCGTTTCAAAAAAAATCGTGTTTTCAAAAAAAAATTCT
1 AAAAATTCTCGTGTTTCAAAAATTTTCGCGTTTCAAAAAAAATCGTGTCTTC---AAAAAATTCT
21280188 CGT-ATTTC
63 CGTGATTTC
* * * ** * *
21280196 AAAAATTTTTGTGTTTCAAAAATTTTCGTGTTTTTAATAAATTGCCGTGTCTTC-AAAAATTCTC
1 AAAAATTCTCGTGTTTCAAAAATTTTCGCGTTTCAAAAAAAAT--CGTGTCTTCAAAAAATTCTC
21280260 GTG
64 GTG
21280263 TTTTTTTTAA
Statistics
Matches: 113, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
70 24 0.21
71 20 0.18
72 11 0.10
73 39 0.35
74 11 0.10
75 8 0.07
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (71 bp):
AAAAATTCTCGTGTTTCAAAAATTTTCGCGTTTCAAAAAAAATCGTGTCTTCAAAAAATTCTCGT
GATTTC
Found at i:21287903 original size:50 final size:49
Alignment explanation
Indices: 21287823--21288294 Score: 317
Period size: 50 Copynumber: 9.5 Consensus size: 49
21287813 TACAATTCAA
*
21287823 AGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGC-ATGCAGCGGAGC
* * * * **** *
21287873 AGATTGAAGCTACAATGGCGAAT-TTCACTTCCCTGACATTGCAATTCA-A
1 AGATTGAAGCCACAACGGCGAATCTT-ACTTCCCAGGCA-TGCAGCGGAGC
*
21287922 AGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGC-ATGCAGCGGAGC
* * * * **** *
21287972 AGATTGAAGCTACAATGGCGAAT-TTCACTTCCCTGACATTGCAATTCA-A
1 AGATTGAAGCCACAACGGCGAATCTT-ACTTCCCAGGCA-TGCAGCGGAGC
** *
21288021 AGATTGAAGCCACAACGATGAATCTTACTTCCCAGGTAATGCAGCGGAGC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCAGG-CATGCAGCGGAGC
* * * * * **** *
21288071 AGATTGAAGCTACAACGACGAATCTCACTTCCCTGACATTGCAATTCA-A
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCA-TGCAGCGGAGC
*
21288120 AGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGC-ATGCAGCGGAGC
* * * * * * **** *
21288170 AAATTGAAGCTACAAAGGCGAATCTCACTTCCCTGACATTGCAATTCA-A
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCA-TGCAGCGGAGC
* * * * **
21288219 AGATTGAAGCCACAACGGCGAGTCTTACTTGCCAGGCGATGTAGTGGAAT
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGC-ATGCAGCGGAGC
* * *
21288269 AGGTTGAAGCTACGACGGCGAATCTT
1 AGATTGAAGCCACAACGGCGAATCTT
21288295 GTTTCCTTGA
Statistics
Matches: 313, Mismatches: 93, Indels: 32
0.71 0.21 0.07
Matches are distributed among these distances:
49 144 0.46
50 169 0.54
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (49 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCATGCAGCGGAGC
Found at i:21287986 original size:99 final size:99
Alignment explanation
Indices: 21287815--21288293 Score: 787
Period size: 99 Copynumber: 4.8 Consensus size: 99
21287805 CCATAGTTTA
21287815 CAATTCAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGCAGATTGA
1 CAATTCAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGCAGATTGA
* *
21287880 AGCTACAATGGCGAATTTCACTTCCCTGACATTG
66 AGCTACAACGGCGAATCTCACTTCCCTGACATTG
21287914 CAATTCAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGCAGATTGA
1 CAATTCAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGCAGATTGA
* *
21287979 AGCTACAATGGCGAATTTCACTTCCCTGACATTG
66 AGCTACAACGGCGAATCTCACTTCCCTGACATTG
* **
21288013 CAATTCAAAGATTGAAGCCACAACGATGAATCTTACTTCCCAGGTAATGCAGCGGAGCAGATTGA
1 CAATTCAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGCAGATTGA
*
21288078 AGCTACAACGACGAATCTCACTTCCCTGACATTG
66 AGCTACAACGGCGAATCTCACTTCCCTGACATTG
*
21288112 CAATTCAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGCAAATTGA
1 CAATTCAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGCAGATTGA
*
21288177 AGCTACAAAGGCGAATCTCACTTCCCTGACATTG
66 AGCTACAACGGCGAATCTCACTTCCCTGACATTG
* * * * * ** *
21288211 CAATTCAAAGATTGAAGCCACAACGGCGAGTCTTACTTGCCAGGCGATGTAGTGGAATAGGTTGA
1 CAATTCAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGCAGATTGA
*
21288276 AGCTACGACGGCGAATCT
66 AGCTACAACGGCGAATCT
21288294 TGTTTCCTTG
Statistics
Matches: 357, Mismatches: 23, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 357 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (99 bp):
CAATTCAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGCAGATTGA
AGCTACAACGGCGAATCTCACTTCCCTGACATTG
Found at i:21289422 original size:3 final size:3
Alignment explanation
Indices: 21289414--21289443 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
21289404 CCTCCAATAT
21289414 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
21289444 CCTACTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:21289508 original size:27 final size:26
Alignment explanation
Indices: 21289478--21289554 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
21289468 AAATCTCGAT
*
21289478 ATATATATACATGTATATATTTTTATG
1 ATATATATACAT-TATATATTTTTATA
* *
21289505 ATATACATACATTAT-TTTTTTTATA
1 ATATATATACATTATATATTTTTATA
*
21289530 ACTTCTATATAC-TTATATATTTTTA
1 A--TATATATACATTATATATTTTTA
21289555 CATATTTTAC
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
25 9 0.22
26 7 0.17
27 25 0.61
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.55
Consensus pattern (26 bp):
ATATATATACATTATATATTTTTATA
Found at i:21289686 original size:4 final size:4
Alignment explanation
Indices: 21289677--21289708 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
21289667 TTTTAAAATT
21289677 CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA
21289709 TATTATGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:21289828 original size:18 final size:17
Alignment explanation
Indices: 21289805--21289843 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
21289795 TGCTTTAATT
*
21289805 TTTTATTTGTTTATTTAC
1 TTTTATTTGTTGATTT-C
21289823 TTTTATTTGTTGATTTC
1 TTTTATTTGTTGATTTC
21289840 TTTT
1 TTTT
21289844 CATTATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.13, C:0.05, G:0.08, T:0.74
Consensus pattern (17 bp):
TTTTATTTGTTGATTTC
Found at i:21295810 original size:35 final size:35
Alignment explanation
Indices: 21295771--21295843 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
21295761 TGCACATACT
21295771 TTTGTTGCAACATAGAACCTAAATTTGTGCATGTA
1 TTTGTTGCAACATAGAACCTAAATTTGTGCATGTA
*
21295806 TTTGTTGCAACATAGAACCTGAATTTGTGCATGTA
1 TTTGTTGCAACATAGAACCTAAATTTGTGCATGTA
21295841 TTT
1 TTT
21295844 TGTGAAGTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.40
Consensus pattern (35 bp):
TTTGTTGCAACATAGAACCTAAATTTGTGCATGTA
Found at i:21299158 original size:12 final size:12
Alignment explanation
Indices: 21299141--21299186 Score: 62
Period size: 11 Copynumber: 4.0 Consensus size: 12
21299131 AACTAATCCT
21299141 CTCTCAAATTTC
1 CTCTCAAATTTC
21299153 CTCTC-AATTTC
1 CTCTCAAATTTC
21299164 CTCTCAAA-TTC
1 CTCTCAAATTTC
21299175 CT-TCCAAATTTC
1 CTCT-CAAATTTC
21299187 TCTGAAATCC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
10 1 0.03
11 20 0.65
12 10 0.32
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:21299189 original size:22 final size:21
Alignment explanation
Indices: 21299140--21299194 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
21299130 AAACTAATCC
21299140 TCTCTCAAATTTCCTCTCAATT
1 TCTCTCAAA-TTCCTCTCAATT
21299162 TCCTCTCAAATTCCT-TCCAAATT
1 T-CTCTCAAATTCCTCT-C-AATT
*
21299185 TCTCTGAAAT
1 TCTCTCAAAT
21299195 CCATATTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 1 0.03
22 15 0.52
23 13 0.45
ACGTcount: A:0.25, C:0.31, G:0.02, T:0.42
Consensus pattern (21 bp):
TCTCTCAAATTCCTCTCAATT
Found at i:21299235 original size:51 final size:51
Alignment explanation
Indices: 21299154--21299253 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
21299144 TCAAATTTCC
21299154 TCTCAATTTCCTCTCAAATTCCTTCCAAATTTCTCTGAAATCCATATTTAA
1 TCTCAATTTCCTCTCAAATTCCTTCCAAATTTCTCTGAAATCCATATTTAA
* * * * *
21299205 TCTCAATTTGCTCTCAATTTCC-TCTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTCCTCTCAAATTCCTTC-CAAATTTCTCTGAAATCCATATTT
21299254 TTAAATAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 2 0.05
51 41 0.95
ACGTcount: A:0.26, C:0.27, G:0.02, T:0.45
Consensus pattern (51 bp):
TCTCAATTTCCTCTCAAATTCCTTCCAAATTTCTCTGAAATCCATATTTAA
Found at i:21302712 original size:12 final size:11
Alignment explanation
Indices: 21302695--21302739 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
21302685 TTTGGTTTTC
21302695 ATTAATTTTGAT
1 ATTAATTTT-AT
*
21302707 ATTAATTTTAA
1 ATTAATTTTAT
21302718 ATTAATTCTTAT
1 ATTAATT-TTAT
21302730 -TTAATTTTAT
1 ATTAATTTTAT
21302740 TATTTTTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 4 0.13
11 14 0.47
12 12 0.40
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (11 bp):
ATTAATTTTAT
Found at i:21306197 original size:13 final size:13
Alignment explanation
Indices: 21306179--21306211 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
21306169 TTATTTGATT
21306179 TTTATTTTGTTTA
1 TTTATTTTGTTTA
21306192 TTTATTTTTGTTTA
1 TTTA-TTTTGTTTA
21306206 -TTATTT
1 TTTATTT
21306212 GGACTGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 3 0.16
13 7 0.37
14 9 0.47
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (13 bp):
TTTATTTTGTTTA
Found at i:21306202 original size:14 final size:14
Alignment explanation
Indices: 21306179--21306211 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
21306169 TTATTTGATT
21306179 TTTA-TTTTGTTTA
1 TTTATTTTTGTTTA
21306192 TTTATTTTTGTTTA
1 TTTATTTTTGTTTA
21306206 -TTATTT
1 TTTATTT
21306212 GGACTGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (14 bp):
TTTATTTTTGTTTA
Found at i:21306444 original size:38 final size:38
Alignment explanation
Indices: 21306371--21306445 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
21306361 ATCGTAGAAT
* *
21306371 GGTTATCGACTGGCTCGCTAGAGCAACACCGTGACGAC
1 GGTTATCGACTGGCTCACTAGAGCAACACCATGACGAC
* *
21306409 GGTTATCGACTGGCTCACTAGAGCGACACTATGACGA
1 GGTTATCGACTGGCTCACTAGAGCAACACCATGACGA
21306446 TGATCTATCG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.20
Consensus pattern (38 bp):
GGTTATCGACTGGCTCACTAGAGCAACACCATGACGAC
Found at i:21307482 original size:36 final size:37
Alignment explanation
Indices: 21307408--21307482 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 37
21307398 TCCTTAGATT
*
21307408 TTTTGGTATTCTTTCATGTTTTTAAAAAAATGTTAAAA
1 TTTTGGTATTCTTTCATGTTTTT-AAAAAATGTGAAAA
21307446 TTTTGGTATTCTTTCATGTTTTT-AAAAATGTGAAAA
1 TTTTGGTATTCTTTCATGTTTTTAAAAAATGTGAAAA
21307482 T
1 T
21307483 ATGAATAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 13 0.36
38 23 0.64
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.51
Consensus pattern (37 bp):
TTTTGGTATTCTTTCATGTTTTTAAAAAATGTGAAAA
Found at i:21307494 original size:18 final size:18
Alignment explanation
Indices: 21307471--21307511 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
21307461 ATGTTTTTAA
21307471 AAATGTGAAAATATGAAT
1 AAATGTGAAAATATGAAT
*
21307489 AAATGTGAAAATTTGAAT
1 AAATGTGAAAATATGAAT
21307507 AAATG
1 AAATG
21307512 AAATTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
AAATGTGAAAATATGAAT
Found at i:21307649 original size:20 final size:20
Alignment explanation
Indices: 21307626--21307723 Score: 85
Period size: 20 Copynumber: 4.8 Consensus size: 20
21307616 TTCTCCATTT
*
21307626 TTTTTTGTATCTCCTCATAA
1 TTTTTTGTATTTCCTCATAA
*
21307646 TTTTTTGT-TTTCCATCATAC
1 TTTTTTGTATTTCC-TCATAA
*
21307666 TTTCTTTGTATTTCCT--TAGT
1 TTT-TTTGTATTTCCTCATA-A
*
21307686 TTTTTTGGTATTCCCTCATAA
1 TTTTTT-GTATTTCCTCATAA
*
21307707 TTTTTTTATATTTCCTC
1 -TTTTTTGTATTTCCTC
21307724 GAATGTGTTG
Statistics
Matches: 63, Mismatches: 7, Indels: 15
0.74 0.08 0.18
Matches are distributed among these distances:
19 9 0.14
20 27 0.43
21 14 0.22
22 13 0.21
ACGTcount: A:0.15, C:0.18, G:0.06, T:0.60
Consensus pattern (20 bp):
TTTTTTGTATTTCCTCATAA
Found at i:21308081 original size:20 final size:19
Alignment explanation
Indices: 21308051--21308120 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 19
21308041 TTTTTGTACT
21308051 TCATATGTTTTTGTATCCCC
1 TCATAT-TTTTTGTATCCCC
* *
21308071 TCATAATTTTTAGTATTCCC
1 TCAT-ATTTTTTGTATCCCC
**
21308091 TCATATTTTTCTGTATCCTT
1 TCATATTTTT-TGTATCCCC
21308111 TCATATTTTT
1 TCATATTTTT
21308121 GGTACTTATT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
19 6 0.14
20 34 0.81
21 2 0.05
ACGTcount: A:0.19, C:0.20, G:0.06, T:0.56
Consensus pattern (19 bp):
TCATATTTTTTGTATCCCC
Found at i:21308138 original size:19 final size:20
Alignment explanation
Indices: 21308116--21308163 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
21308106 TCCTTTCATA
*
21308116 TTTTTGGTACTTAT-TTATT
1 TTTTTAGTACTTATCTTATT
*
21308135 TTTTTAGTA-TTCTCTTATT
1 TTTTTAGTACTTATCTTATT
*
21308154 TTTTTTGTAC
1 TTTTTAGTAC
21308164 ACCCTCGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 3 0.12
19 21 0.88
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (20 bp):
TTTTTAGTACTTATCTTATT
Found at i:21308682 original size:21 final size:21
Alignment explanation
Indices: 21308658--21308725 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
21308648 TGAGCTAAGT
21308658 AAAAAAAAATGAGAGAATATC
1 AAAAAAAAATGAGAGAATATC
* * *
21308679 AAAAAAACATGAGAAAATACC
1 AAAAAAAAATGAGAGAATATC
* * * *
21308700 AAAAAAATATGAAAGAGTTTC
1 AAAAAAAAATGAGAGAATATC
21308721 AAAAA
1 AAAAA
21308726 TTACGAGGGA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.66, C:0.07, G:0.12, T:0.15
Consensus pattern (21 bp):
AAAAAAAAATGAGAGAATATC
Found at i:21312299 original size:40 final size:42
Alignment explanation
Indices: 21312240--21312359 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 42
21312230 ATTGCGGCTT
21312240 TAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-AGA-TG
1 TAATCTGCT-C-CTGCAACTTCAGGGAGATAAGATCTGAGATTG
* * *
21312281 TGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGAGATTT
1 TAATCTGCTC-CTGCAACTTCAGGGAGATAAGATCTGAGATTG
* *
21312324 TAATCTGCTCCATTGCATCTTCAGGGAGATAGGATC
1 TAATCTGCTCC--TGCAACTTCAGGGAGATAAGATC
21312360 CCGGCCACTA
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
40 22 0.33
41 10 0.15
42 4 0.06
43 10 0.15
44 20 0.30
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (42 bp):
TAATCTGCTCCTGCAACTTCAGGGAGATAAGATCTGAGATTG
Found at i:21324397 original size:25 final size:25
Alignment explanation
Indices: 21324337--21324389 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
21324327 ATATATAGCT
21324337 AAAATAATAATAATTACATATGAAA
1 AAAATAATAATAATTACATATGAAA
**
21324362 CTAATAATAATAATTACAT-T-AAA
1 AAAATAATAATAATTACATATGAAA
21324385 AAAAT
1 AAAAT
21324390 TAACTAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 6 0.25
24 1 0.04
25 17 0.71
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (25 bp):
AAAATAATAATAATTACATATGAAA
Found at i:21324822 original size:50 final size:51
Alignment explanation
Indices: 21324747--21324852 Score: 196
Period size: 50 Copynumber: 2.1 Consensus size: 51
21324737 AGTAAGCCAC
21324747 CTTTAAAAAACTGCCAATCGTTCTCTTTTTTATTCCTCA-TCATCCTCTCT
1 CTTTAAAAAACTGCCAATCGTTCTCTTTTTTATTCCTCATTCATCCTCTCT
21324797 CTTTAAAAAACTGCCAATCGTTCTCTTTTTTATTCCTCATTCATCCTCTCT
1 CTTTAAAAAACTGCCAATCGTTCTCTTTTTTATTCCTCATTCATCCTCTCT
*
21324848 TTTTA
1 CTTTA
21324853 CAATGAAGGG
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
50 39 0.72
51 15 0.28
ACGTcount: A:0.22, C:0.28, G:0.04, T:0.46
Consensus pattern (51 bp):
CTTTAAAAAACTGCCAATCGTTCTCTTTTTTATTCCTCATTCATCCTCTCT
Found at i:21325004 original size:19 final size:19
Alignment explanation
Indices: 21324980--21325054 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
21324970 AACCATATCT
21324980 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
*
21324999 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
21325020 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
21325039 TCTAAGATTACATATC
1 TCTAAGATTACATATC
21325055 CTCGAAGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 32 0.64
21 18 0.36
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:21325017 original size:21 final size:21
Alignment explanation
Indices: 21324991--21325053 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
21324981 CTAAGATTAC
21324991 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
21325012 ATATCATATCTAAGATTGC--
1 ATATCATATCTAAGATTGCAT
*
21325031 ATATCATATCTAAGATTACAT
1 ATATCATATCTAAGATTGCAT
21325052 AT
1 AT
21325054 CCTCGAAGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 18 0.46
21 21 0.54
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:21325666 original size:81 final size:80
Alignment explanation
Indices: 21325532--21325688 Score: 253
Period size: 81 Copynumber: 1.9 Consensus size: 80
21325522 CTCATTTTAG
*
21325532 TAAAATGTTAGACTTATTAAAACAATACTTTTCGATCTACAAAATCCAAGAAATGGGA-TCGGGA
1 TAAAATGTTAGACTTATTAAAAAAATACTTTTCGATCTACAAAATCCAAGAAAT-GGATTCGGGA
21325596 GTCAGTTACGCATTAA
65 GTCAGTTACGCATTAA
* *
21325612 TAAAATGTTAGACTTATTAAAAAAAATACTTTTCGATCTACAAAATCCAGGAAATTGATTCGGGA
1 TAAAATGTTAGACTTATT-AAAAAAATACTTTTCGATCTACAAAATCCAAGAAATGGATTCGGGA
*
21325677 GTCGGTTACGCA
65 GTCAGTTACGCA
21325689 CGAGGAAGGA
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
80 20 0.28
81 51 0.72
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (80 bp):
TAAAATGTTAGACTTATTAAAAAAATACTTTTCGATCTACAAAATCCAAGAAATGGATTCGGGAG
TCAGTTACGCATTAA
Found at i:21327551 original size:25 final size:23
Alignment explanation
Indices: 21327506--21327552 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
21327496 TTTCTTTTGA
*
21327506 ACTTTTTCTTTTCTATTTTTTTT
1 ACTTTTTCTTTTCTATGTTTTTT
*
21327529 ACTTTTTCGTATTTCTCTGTTTTT
1 ACTTTTTC-T-TTTCTATGTTTTT
21327553 CTCCCCCCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 1 0.05
25 11 0.55
ACGTcount: A:0.09, C:0.15, G:0.04, T:0.72
Consensus pattern (23 bp):
ACTTTTTCTTTTCTATGTTTTTT
Found at i:21328167 original size:44 final size:44
Alignment explanation
Indices: 21328093--21328602 Score: 317
Period size: 44 Copynumber: 11.7 Consensus size: 44
21328083 TCATTCTAAC
* * * * * *
21328093 CCACTGTAACTTC-AGGGGTATAGGAATTGTAATTTCAATATGTT
1 CCACTGCAACTTCAAGGAG-ATAAGATTTGTAATTTCAATCTGCT
* *
21328137 CCACTGCAACTTCAAGGAGATAAGATTTGTACCTTT-AATCTACT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTA-ATTTCAATCTGCT
* * *
21328181 CCGCTGCAGCTTCAGGGAGATAAGATTTGCT-ATCTTCAATCTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTG-TAAT-TTCAATCTGCT
* * * * * **
21328226 CCACTGTAAATTTAGGGAGATAAGATTTGCAGCTTCAATCTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAATTTCAATCTGCT
* * *
21328270 CTACTGCAACTTCAAAGAGATAAGA--T-TCA---CAATCTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAATTTCAATCTGCT
* * * *
21328308 CTACTACAATTTCAAGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAA-TT-T--C---AATCTGCT
* **
21328359 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAATTTCAATCTGCT
* ** *
21328403 CTACTGCAACTTC-AGAGAGAT-A-A---G-AATCACAATATGCT
1 CCACTGCAACTTCAAG-GAGATAAGATTTGTAATTTCAATCTGCT
* *
21328441 CCACTGCAACTTC-AGAGAGGTAAGGTTTGTAACTTT-AATCTGCT
1 CCACTGCAACTTCAAG-GAGATAAGATTTGTAA-TTTCAATCTGCT
** * *
21328485 TTACTGCAACTT-TAGAGAGATAAGATTTGCT-ATCTTCAATCTGTT
1 CCACTGCAACTTCAAG-GAGATAAGATTTG-TAAT-TTCAATCTGCT
* * * *
21328530 CCACTGCAATTTTAAGGAGATAAGATTTGTAGCTTT-AATTTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTA-ATTTCAATCTGCT
21328574 CCACTGCAACTTC-AGAGAGATAAGATTTG
1 CCACTGCAACTTCAAG-GAGATAAGATTTG
21328603 CCACAATAAC
Statistics
Matches: 362, Mismatches: 69, Indels: 70
0.72 0.14 0.14
Matches are distributed among these distances:
38 59 0.16
39 2 0.01
40 1 0.00
41 2 0.01
42 2 0.01
43 7 0.02
44 176 0.49
45 72 0.20
46 3 0.01
47 1 0.00
48 1 0.00
49 1 0.00
50 1 0.00
51 34 0.09
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTCAAGGAGATAAGATTTGTAATTTCAATCTGCT
Found at i:21328252 original size:89 final size:88
Alignment explanation
Indices: 21328152--21328602 Score: 297
Period size: 89 Copynumber: 5.2 Consensus size: 88
21328142 GCAACTTCAA
* * *
21328152 GGAGATAAGATTTGTACCTTTAATCTACTCCGCTGCAGCTTCAGGGAGATAAGATTTGCTATCTT
1 GGAGATAAGATTTGTACCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTA-CTT
*
21328217 CAATCTGCTCCACTGTAAATTTAG
65 CAATCTGCTCTACTGTAAATTTAG
* * * * **
21328241 GGAGATAAGATTTGCAGCTTCAATCTGCTCTACTGCAACTTCAAAGAGATAAGA-TT-C-A---C
1 GGAGATAAGATTTGTACCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTACTTC
*
21328300 AATCTGCTCTAC--TACAATTTCAA
66 AATCTGCTCTACTGTA-AATTT-AG
*
21328323 GGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTG
1 GGAGATAAGATTTGT-AC------CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
* * *
21328388 -TAGCTTCAATCTGCTCTACTGCAACTTCAG
59 CTA-CTTCAATCTGCTCTACTGTAAATTTAG
* * * * * * *
21328418 AGAGATAAGA-AT-CA-C---AATATGCTCCACTGCAACTTCAGAGAGGTAAGGTTTG-TAACTT
1 GGAGATAAGATTTGTACCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCT-ACTT
* * * *
21328476 TAATCTGCTTTACTGCAACTTTAG
65 CAATCTGCTCTACTGTAAATTTAG
* * * * * * *
21328500 AGAGATAAGATTTGCTATCTTCAATCTGTTCCACTGCAATTTTAAGGAGATAAGATTTG-TAGCT
1 GGAGATAAGATTTG-TACCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTA-CT
* * * * * *
21328564 TTAATTTGCTCCACTGCAACTTCAG
64 TCAATCTGCTCTACTGTAAATTTAG
*
21328589 AGAGATAAGATTTG
1 GGAGATAAGATTTG
21328603 CCACAATAAC
Statistics
Matches: 288, Mismatches: 47, Indels: 54
0.74 0.12 0.14
Matches are distributed among these distances:
80 2 0.01
81 5 0.02
82 94 0.33
83 3 0.01
85 2 0.01
86 2 0.01
87 1 0.00
88 3 0.01
89 144 0.50
90 2 0.01
91 1 0.00
92 1 0.00
94 1 0.00
95 23 0.08
96 3 0.01
97 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (88 bp):
GGAGATAAGATTTGTACCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTACTTC
AATCTGCTCTACTGTAAATTTAG
Found at i:21328312 original size:38 final size:38
Alignment explanation
Indices: 21328261--21328334 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
21328251 TTTGCAGCTT
*
21328261 CAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTCA
1 CAATCTGCTCTACTACAACTTCAAAGAGATAAGATTCA
* *
21328299 CAATCTGCTCTACTACAATTTCAAGGAGATAAGATT
1 CAATCTGCTCTACTACAACTTCAAAGAGATAAGATT
21328335 TGTAACTTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (38 bp):
CAATCTGCTCTACTACAACTTCAAAGAGATAAGATTCA
Found at i:21328355 original size:133 final size:126
Alignment explanation
Indices: 21328190--21328602 Score: 405
Period size: 133 Copynumber: 3.2 Consensus size: 126
21328180 TCCGCTGCAG
* * * * * *
21328190 CTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGTAAATTTAGGGAGATAAGATTTG
1 CTTCAGAGAGATAAGGTTTG-TAACTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTG
* *
21328255 CAGCTTCAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTCACAATCTGCTCTACTACAA
65 CAGCTTCAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTCACAATATGCTCCACTACAA
* * * *
21328317 TTTCA-AGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAGATA
1 CTTCAGA-GAGATAAG----GT---TTGTAACTTTAATCTGCTCCACTGCAACTTTAGGGAGATA
* * *
21328381 AGATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGAATCACAATATGCTCCACT
58 AGATTTGCAGCTTCAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTCACAATATGCTCCACT
*
21328446 GCAA
123 ACAA
* ** *
21328450 CTTCAGAGAGGTAAGGTTTGTAACTTTAATCTGCTTTACTGCAACTTTAGAGAGATAAGATTTGC
1 CTTCAGAGAGATAAGGTTTGTAACTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGC
* * * * * * * * *
21328515 TATCTTCAATCTGTTCCACTGCAATTTTAAGGAGATAAGATTTGTAGCTTTAATTTGCTCCACTG
66 -AGCTTCAATCTGCTCTACTGCAACTTCAAAGAGATAAGA-TT-CA-C---AATATGCTCCACTA
21328580 CAA
124 CAA
*
21328583 CTTCAGAGAGATAAGATTTG
1 CTTCAGAGAGATAAGGTTTG
21328603 CCACAATAAC
Statistics
Matches: 234, Mismatches: 36, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
126 41 0.18
127 44 0.19
128 1 0.00
129 3 0.01
130 1 0.00
131 1 0.00
133 139 0.59
134 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (126 bp):
CTTCAGAGAGATAAGGTTTGTAACTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGC
AGCTTCAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTCACAATATGCTCCACTACAA
Found at i:21330715 original size:79 final size:80
Alignment explanation
Indices: 21330579--21330735 Score: 246
Period size: 79 Copynumber: 2.0 Consensus size: 80
21330569 AAACTCATTT
*
21330579 TAATAAAATGTTAGACTTATTAAAACGATACTTTTCGATCTACAAAATCTAGAAAATGAG-TCGG
1 TAATAAAATGTTAGACTTATTAAAACGATACTTTTCGATCTACAAAATCTAGAAAATGAGTTCAG
21330643 GAGTCGGTTACGCAG
66 GAGTCGGTTACGCAG
* * * *
21330658 TAATAAAATGTTAGACTTATTAAAACGATACTTTTTGATCTACAAAAT-TCAGGAAATGGGTTTA
1 TAATAAAATGTTAGACTTATTAAAACGATACTTTTCGATCTACAAAATCT-AGAAAATGAGTTCA
21330722 GGAGTCGGTTACGC
65 GGAGTCGGTTACGC
21330736 GCGAGGAAGG
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
78 1 0.01
79 55 0.77
80 15 0.21
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (80 bp):
TAATAAAATGTTAGACTTATTAAAACGATACTTTTCGATCTACAAAATCTAGAAAATGAGTTCAG
GAGTCGGTTACGCAG
Found at i:21331309 original size:14 final size:14
Alignment explanation
Indices: 21331260--21331338 Score: 54
Period size: 14 Copynumber: 5.5 Consensus size: 14
21331250 TGTAGGTAGA
21331260 ATAATAAATAATAAGT
1 ATAAT-AATAATAA-T
*
21331276 A-AATAAATGAATACT
1 ATAAT-AAT-AATAAT
*
21331291 GTAATAATAATAAT
1 ATAATAATAATAAT
*
21331305 ATAATAATAATCAT
1 ATAATAATAATAAT
* * *
21331319 ATTATAGTAATGAT
1 ATAATAATAATAAT
21331333 A-AATAA
1 ATAATAA
21331339 ATAAAGTGAC
Statistics
Matches: 51, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
13 3 0.06
14 29 0.57
15 11 0.22
16 8 0.16
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:21331312 original size:17 final size:17
Alignment explanation
Indices: 21331292--21331334 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
21331282 ATGAATACTG
21331292 TAATAATAATAATATAA
1 TAATAATAATAATATAA
* * *
21331309 TAATAATCATATTATAG
1 TAATAATAATAATATAA
*
21331326 TAATGATAA
1 TAATAATAA
21331335 ATAAATAAAG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (17 bp):
TAATAATAATAATATAA
Found at i:21331644 original size:27 final size:27
Alignment explanation
Indices: 21331586--21331638 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
21331576 ACTAAAAGAG
* *
21331586 AAAAATAAAATAAAATAAATTCTCAAT
1 AAAAAGAAAATAAAATAAATTCTAAAT
21331613 AAAAAGAAAATAAAA-AAATT-TAAAT
1 AAAAAGAAAATAAAATAAATTCTAAAT
21331638 A
1 A
21331639 TTAAAAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 5 0.21
27 14 0.58
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.23
Consensus pattern (27 bp):
AAAAAGAAAATAAAATAAATTCTAAAT
Found at i:21331913 original size:16 final size:16
Alignment explanation
Indices: 21331892--21331926 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
21331882 GAAATGCGCG
21331892 AAAAGAATTAGAGACT
1 AAAAGAATTAGAGACT
*
21331908 AAAAGAATTAGGGACT
1 AAAAGAATTAGAGACT
21331924 AAA
1 AAA
21331927 TGGGACATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (16 bp):
AAAAGAATTAGAGACT
Found at i:21332526 original size:13 final size:13
Alignment explanation
Indices: 21332508--21332534 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21332498 ATAGTTAATC
21332508 TAATGGTGCAAAA
1 TAATGGTGCAAAA
21332521 TAATGGTGCAAAA
1 TAATGGTGCAAAA
21332534 T
1 T
21332535 TATCATTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (13 bp):
TAATGGTGCAAAA
Found at i:21348691 original size:15 final size:15
Alignment explanation
Indices: 21348671--21348702 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
21348661 ATAAATTTTC
*
21348671 ATTTTATTTTTACAT
1 ATTTTATTTTTAAAT
21348686 ATTTTATTTTTAAAT
1 ATTTTATTTTTAAAT
21348701 AT
1 AT
21348703 GTTTTACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTTTATTTTTAAAT
Found at i:21353268 original size:14 final size:16
Alignment explanation
Indices: 21353249--21353281 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
21353239 GGCCCGTATT
21353249 AATTTTT-TTA-ATAA
1 AATTTTTATTATATAA
21353263 AATTTTTATTATATAA
1 AATTTTTATTATATAA
21353279 AAT
1 AAT
21353282 AAATTTAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 3 0.18
16 7 0.41
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
AATTTTTATTATATAA
Found at i:21361086 original size:18 final size:18
Alignment explanation
Indices: 21361060--21361094 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21361050 ATTGTATTTT
*
21361060 TATCGATACCATCTTTGA
1 TATCAATACCATCTTTGA
*
21361078 TATCAATACCATTTTTG
1 TATCAATACCATCTTTG
21361095 CATTCTTACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.43
Consensus pattern (18 bp):
TATCAATACCATCTTTGA
Found at i:21361176 original size:20 final size:21
Alignment explanation
Indices: 21361127--21361181 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
21361117 AAACAATCAT
* *
21361127 AAAAAGTATCGATATCTTTTC
1 AAAAGGTATCGATACCTTTTC
21361148 AAAAGGTATCGATACCTTTT-
1 AAAAGGTATCGATACCTTTTC
**
21361168 ACCAGGTATCGATA
1 AAAAGGTATCGATA
21361182 AAATGTCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (21 bp):
AAAAGGTATCGATACCTTTTC
Found at i:21367101 original size:17 final size:17
Alignment explanation
Indices: 21367079--21367111 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
21367069 TATATTTTTA
21367079 TTTTTAATCAAATATAC
1 TTTTTAATCAAATATAC
21367096 TTTTTAATCAAATATA
1 TTTTTAATCAAATATA
21367112 TATTAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:21369104 original size:24 final size:25
Alignment explanation
Indices: 21369051--21369104 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 25
21369041 AAAATTAAAA
* *
21369051 ATAAAAAGGTTCTAATGCACGATTT
1 ATAATAAGGTTCTAATGCAAGATTT
*
21369076 CTAATAAGGTT-TAAT-CAAGATTAT
1 ATAATAAGGTTCTAATGCAAGATT-T
21369100 ATAAT
1 ATAAT
21369105 TGTGTTGGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
23 6 0.25
24 9 0.38
25 9 0.38
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (25 bp):
ATAATAAGGTTCTAATGCAAGATTT
Found at i:21370628 original size:13 final size:13
Alignment explanation
Indices: 21370594--21370630 Score: 65
Period size: 14 Copynumber: 2.8 Consensus size: 13
21370584 TGTAATTTGA
21370594 AATTTGAAAACTT
1 AATTTGAAAACTT
21370607 AAGTTTGAAAACTT
1 AA-TTTGAAAACTT
21370621 AATTTGAAAA
1 AATTTGAAAA
21370631 TTTGGAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.49, C:0.05, G:0.11, T:0.35
Consensus pattern (13 bp):
AATTTGAAAACTT
Found at i:21370911 original size:34 final size:34
Alignment explanation
Indices: 21370868--21371111 Score: 382
Period size: 34 Copynumber: 7.1 Consensus size: 34
21370858 TTACTTGTCT
21370868 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
* * *
21370902 TTTCTTGCAGGGAATCTTTCCTTTTCACGCATCA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
* * * *
21370936 TTTCTTGCAGGGAATAATC-CCTATTCACGCATTA
1 TTTCTTGCAGGGAAT-CTCTCCTGTTCACACATCA
*
21370970 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATCA
1 -TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
21371005 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
21371039 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
*
21371073 TTTCTTGCAGGGAATCTCTCCTGTTCATACATCA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
21371107 TTTCT
1 TTTCT
21371112 GGTATTATTT
Statistics
Matches: 193, Mismatches: 14, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
34 166 0.86
35 27 0.14
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (34 bp):
TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
Found at i:21383882 original size:47 final size:49
Alignment explanation
Indices: 21383798--21383893 Score: 178
Period size: 47 Copynumber: 2.0 Consensus size: 49
21383788 AAAAACTAAG
21383798 GGTTAAAAAACTAAGTAAAAAAATTTAAAAATAAAAAGGTTCTAATGCA
1 GGTTAAAAAACTAAGTAAAAAAATTTAAAAATAAAAAGGTTCTAATGCA
21383847 GGTT-AAAAACTAAGTAAAAAAA-TTAAAAATAAAAAGGTTCTAATGCA
1 GGTTAAAAAACTAAGTAAAAAAATTTAAAAATAAAAAGGTTCTAATGCA
21383894 CAATTTCAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
47 25 0.53
48 18 0.38
49 4 0.09
ACGTcount: A:0.57, C:0.06, G:0.12, T:0.24
Consensus pattern (49 bp):
GGTTAAAAAACTAAGTAAAAAAATTTAAAAATAAAAAGGTTCTAATGCA
Found at i:21400436 original size:35 final size:35
Alignment explanation
Indices: 21400397--21400516 Score: 134
Period size: 35 Copynumber: 3.4 Consensus size: 35
21400387 TACTCTTTAT
* *
21400397 TTGGTGTGTTTTGGAGGGGCTAGCTCTTATAAGTA
1 TTGGTGTGTTTTGGAGGGACTAGCTCTTATAAGCA
***
21400432 TTGGTGTGTTTTGGTTAGACTAGCTCTTATAAGCA
1 TTGGTGTGTTTTGGAGGGACTAGCTCTTATAAGCA
* * * *
21400467 TTGGTGT-TTTTCGGAGGGATTGGCTCGTGTAAGCA
1 TTGGTGTGTTTT-GGAGGGACTAGCTCTTATAAGCA
21400502 TCTGGTGTGTTTTGG
1 T-TGGTGTGTTTTGG
21400517 TTAGACTGAT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
34 4 0.06
35 54 0.77
36 8 0.11
37 4 0.06
ACGTcount: A:0.15, C:0.10, G:0.33, T:0.42
Consensus pattern (35 bp):
TTGGTGTGTTTTGGAGGGACTAGCTCTTATAAGCA
Found at i:21401347 original size:15 final size:16
Alignment explanation
Indices: 21401327--21401364 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
21401317 TGAGACACGG
*
21401327 GTGTGTGACTCA-ACC
1 GTGTGTGACACACACC
21401342 GTGTGTGACACACGACC
1 GTGTGTGACACAC-ACC
21401359 GTGTGT
1 GTGTGT
21401365 CCCATGTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 11 0.55
17 9 0.45
ACGTcount: A:0.18, C:0.24, G:0.32, T:0.26
Consensus pattern (16 bp):
GTGTGTGACACACACC
Found at i:21406322 original size:11 final size:10
Alignment explanation
Indices: 21406294--21406326 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
21406284 TATTTTTATT
21406294 AATTATTTTA
1 AATTATTTTA
21406304 AATTATTTTA
1 AATTATTTTA
21406314 AATTTATTTTA
1 AA-TTATTTTA
21406325 AA
1 AA
21406327 ATTTTTGCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
AATTATTTTA
Found at i:21406479 original size:3 final size:3
Alignment explanation
Indices: 21406471--21406508 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
21406461 NNNNNNNNNN
21406471 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
21406509 AGGGGTCAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:21409280 original size:6 final size:6
Alignment explanation
Indices: 21409265--21409295 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
21409255 GCTACCTCCG
*
21409265 CCGCCC CCGCCT CCGCCT CCGCCT CCGCCT C
1 CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT C
21409296 TGCCATATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.71, G:0.16, T:0.13
Consensus pattern (6 bp):
CCGCCT
Found at i:21409584 original size:3 final size:3
Alignment explanation
Indices: 21409576--21409606 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
21409566 AGTTGCCATG
21409576 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
21409607 TGCTGATGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:21413625 original size:29 final size:29
Alignment explanation
Indices: 21413583--21414124 Score: 399
Period size: 29 Copynumber: 18.5 Consensus size: 29
21413573 NNNNNNNNNN
21413583 TAGGGTTTTTAATTAAATTAGGTTAGGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGT
* *
21413612 TAGGGGTTTTAATT--A--GGGTTTA-GGT
1 TAGGGTTTTTAATTAAATTAGG-TTAGGGT
*
21413637 TAAGGTTTTTAATTAAATTAGGTTAGGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGT
*
21413666 TAGGGTTTTTAATT--A--GGGTTTA-GGT
1 TAGGGTTTTTAATTAAATTAGG-TTAGGGT
21413691 TAGGGTTTTTAATTAAATTAGGTTAGGGTTTTT
1 TAGGGTTTTTAATTAAATTAGGTTAGGG----T
* * * **
21413724 AAATAGGTTTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGT
1 ---TAGGGTTT---TTA----ATTAAATTAGGTTA-----GGGT
21413768 TAGGTGTTTTTAATTAAATTAGGTT-GGAGT
1 TAGG-GTTTTTAATTAAATTAGGTTAGG-GT
* *
21413798 TAGGG--TTT--TT-AATTGGGTTA-TGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGT
*
21413821 TAGGGTTTTTAATT--A--GGGTTTA-GGT
1 TAGGGTTTTTAATTAAATTAGG-TTAGGGT
21413846 TAGGGTTTTTAATTAAATTAGGTTAGGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGT
21413875 TAGGGTTTTTTAATTAAATTAGGTTTAGGGT
1 TAGGG-TTTTTAATTAAATTAGG-TTAGGGT
* *** *
21413906 TAAGGTTTTTAATTGGGTTATGTTAGGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGT
*
21413935 TAGGGTTTTTAATTAATTTAGGTTAGGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGT
* ** *
21413964 TAGGGTTTGTAATTAAACCAGGTTAGGAT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGT
* * *
21413993 TAGAGTTTTTTAATTAAGTTAAGTTAGGGT
1 TAG-GGTTTTTAATTAAATTAGGTTAGGGT
* ** *
21414023 TAGAGTTTTTAATTAGGTTATGTTAGGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGT
* *
21414052 TAGGGTTTTTAATTAAGTTAGGTTAGGGC
1 TAGGGTTTTTAATTAAATTAGGTTAGGGT
21414081 TAGGGTTTTTAATTAAATTAGGTTAGGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGT
*
21414110 TAGGGGTTTTAATTA
1 TAGGGTTTTTAATTA
21414125 GGGTTTAGGT
Statistics
Matches: 411, Mismatches: 55, Indels: 94
0.73 0.10 0.17
Matches are distributed among these distances:
23 7 0.02
24 11 0.03
25 60 0.15
26 7 0.02
27 10 0.02
28 9 0.02
29 194 0.47
30 58 0.14
31 11 0.03
33 1 0.00
35 9 0.02
36 7 0.02
39 6 0.01
41 4 0.01
42 3 0.01
43 10 0.02
44 1 0.00
48 3 0.01
ACGTcount: A:0.25, C:0.01, G:0.28, T:0.46
Consensus pattern (29 bp):
TAGGGTTTTTAATTAAATTAGGTTAGGGT
Found at i:21413683 original size:13 final size:13
Alignment explanation
Indices: 21413665--21413705 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
21413655 TAGGTTAGGG
21413665 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
*
21413678 TTAGGG--TTTAGG
1 TTAGGGTTTTTA-A
21413690 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
21413703 TTA
1 TTA
21413706 AATTAGGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
11 4 0.17
12 6 0.26
13 9 0.39
14 4 0.17
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (13 bp):
TTAGGGTTTTTAA
Found at i:21413710 original size:59 final size:54
Alignment explanation
Indices: 21413583--21414136 Score: 508
Period size: 54 Copynumber: 10.0 Consensus size: 54
21413573 NNNNNNNNNN
*
21413583 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGGTTTTAATTAGGGTTTAGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAGGGTTTAGGT
*
21413637 TAAGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAGGGTTTAGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAGGGTTTAGGT
* *
21413691 TAGGGTTTTTAATT-AA--A--TTA-GGTTAGGGTTTTTAAATAGGTTTTAGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAGGGTTTAGGT
**
21413739 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGTGTTTTTAATTA--AATTAGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGG-GTTTTTAATTAGGGTTTAGGT
* *
21413792 T-GGAGTTAGGGTTT--TT-AATTGGGTTA-TGTTAGGGTTTTTAATTAGGGTTTAGGT
1 TAGG-GTT----TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAGGGTTTAGGT
*
21413846 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTTAATTAAATTAGGTTTAGGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTTTTAATT--A--GGGTTTA-GGT
* *** * *
21413906 TAAGGTTTTTAATTGGGTTATGTTAGGGTTAGGGTTTTTAATTAATTTAGG-TTAGGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT-A---GGGTTTA-GGT
* ** * * * *
21413964 TAGGGTTTGTAATTAAACCAGGTTAGGATTAGAGTTTTTTAATTAAGTTAAGTTAGGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAG-GGTTTTTAATTAGGGT---TTA-GGT
* ** * *
21414023 TAGAGTTTTTAATTAGGTTATGTTAGGGTTAGGGTTTTTAATTAAGTTAGG-TTAGGGC
1 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT-AG---GGTTTA-GGT
*
21414081 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGGTTTTAATTAGGGTTTAGGT
1 TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAGGGTTTAGGT
21414135 TA
1 TA
21414137 CAGATGATGA
Statistics
Matches: 415, Mismatches: 49, Indels: 72
0.77 0.09 0.13
Matches are distributed among these distances:
48 40 0.10
49 5 0.01
50 3 0.01
51 2 0.00
52 15 0.04
53 30 0.07
54 104 0.25
55 28 0.07
57 6 0.01
58 87 0.21
59 62 0.15
60 32 0.08
62 1 0.00
ACGTcount: A:0.25, C:0.01, G:0.28, T:0.46
Consensus pattern (54 bp):
TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAGGGTTTAGGT
Found at i:21413829 original size:107 final size:107
Alignment explanation
Indices: 21413598--21414124 Score: 557
Period size: 107 Copynumber: 4.8 Consensus size: 107
21413588 TTTTTAATTA
* * * *
21413598 AATTAGGTTAGGGTTAGGGGTTTTAATTAGGGTTTAGGTTAAGGTTTTTAATTAAATTAGGTTAG
1 AATTGGGTTAGGGTTAGGGTTTTTAATTAGGTTTTAGGTTAGGGTTTTTAATTAAATTAGGTTAG
*
21413663 GGTTAGGGTTTTTAATT--A--GGGTTTA-GGTTAGGGTTTTT
66 GGTTAGGGTTTTTAATTAAATTAGG-TTAGGGTTAGGGTTTTT
*** *
21413701 AATTAAATTA-GGTTAGGGTTTTTAAATAGGTTTTAGGTTAGGGTTTTTAATTAAATTAGGTTAG
1 AATTGGGTTAGGGTTAGGGTTTTTAATTAGGTTTTAGGTTAGGGTTTTTAATTAAATTAGGTTAG
21413765 GGTTAGGTGTTTTTAATTAAATTAGGTT-GGAGTTAGGGTTTTT
66 GGTTAGG-GTTTTTAATTAAATTAGGTTAGG-GTTAGGGTTTTT
* *
21413808 AATTGGGTTA-TGTTAGGGTTTTTAATTAGGGTTTAGGTTAGGGTTTTTAATTAAATTAGGTTAG
1 AATTGGGTTAGGGTTAGGGTTTTTAATTAGGTTTTAGGTTAGGGTTTTTAATTAAATTAGGTTAG
*
21413872 GGTTAGGGTTTTTTAATTAAATTAGGTTTAGGGTTAAGGTTTTT
66 GGTTAGGG-TTTTTAATTAAATTAGG-TTAGGGTTAGGGTTTTT
** *
21413916 AATTGGGTTATGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGGGTTTGTAATTAAA
1 AATT-GG----GTTAGGGTTAGGGTTTTTAATTAGGTT---TTA-GGTTAGGGTTTTTAATTAAA
** * * * * *
21413981 CCAGGTTAGGATTAGAGTTTTTTAATTAAGTTAAGTTAGGGTTAGAGTTTTT
57 TTAGGTTAGGGTTAG-GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTT
* *
21414033 AATTAGGTTATGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGCTAGGGTTTTTAATTAAA
1 AATT-GG----GTTAGGGTTAGGGTTTTTAATTAGGTT---TTA-GGTTAGGGTTTTTAATTAAA
*
21414098 TTAGGTTAGGGTTAGGGGTTTTAATTA
57 TTAGGTTAGGGTTAGGGTTTTTAATTA
21414125 GGGTTTAGGT
Statistics
Matches: 367, Mismatches: 36, Indels: 29
0.85 0.08 0.07
Matches are distributed among these distances:
102 57 0.16
103 18 0.05
105 1 0.00
106 4 0.01
107 96 0.26
108 17 0.05
109 4 0.01
113 4 0.01
114 18 0.05
116 10 0.03
117 91 0.25
118 46 0.13
119 1 0.00
ACGTcount: A:0.25, C:0.01, G:0.28, T:0.46
Consensus pattern (107 bp):
AATTGGGTTAGGGTTAGGGTTTTTAATTAGGTTTTAGGTTAGGGTTTTTAATTAAATTAGGTTAG
GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTT
Found at i:21414054 original size:117 final size:115
Alignment explanation
Indices: 21413634--21414124 Score: 512
Period size: 117 Copynumber: 4.4 Consensus size: 115
21413624 TTAGGGTTTA
* * *
21413634 GGTTAAGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT--A--GGGTTTA-GGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGTTTTTTAATTAAATTAGG-TTAGGGTTAG
* ** * **
21413694 GGTTTTTAA----TTAAATTA-GGTTAGGGTTTTTAAATAGGTT---TTA-
65 AGTTTTTAATTGGTTATGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAG
21413736 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGTGTTTTTAATTAAATTAGGTT-GGAGTTA
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGT-TTTTTAATTAAATTAGGTTAGG-GTTA
* * *
21413800 GGGTTTTTAATTGG----GTTA-TGTTAGGGTTTTTAATT-A---GGGTTTA-
64 GAGTTTTTAATTGGTTATGTTAGGGTTAGGGTTTTTAATTAATTTAGG-TTAG
21413843 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTTAATTAAATTAGGTTTAGGGTTA
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA-GGTTTTTTAATTAAATTAGG-TTAGGGTTA
21413908 -AGGTTTTTAATTGGGTTATGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAG
64 GA-GTTTTTAATT-GGTTATGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAG
* ** * * *
21413961 GGTTAGGGTTTGTAATTAAACCAGGTTAGGATTAGAGTTTTTTAATTAAGTTAAGTTAGGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG-GTTTTTTAATTAAATTAGGTTAGGGTTAG
*
21414026 AGTTTTTAATTAGGTTATGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAG
65 AGTTTTTAATT-GGTTATGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAG
* **
21414078 GGCTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGGTTTTAATTA
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGTTTTTTAATTA
21414125 GGGTTTAGGT
Statistics
Matches: 332, Mismatches: 25, Indels: 50
0.82 0.06 0.12
Matches are distributed among these distances:
102 35 0.11
103 9 0.03
105 1 0.00
106 3 0.01
107 88 0.27
108 19 0.06
109 4 0.01
113 4 0.01
114 16 0.05
115 1 0.00
116 10 0.03
117 92 0.28
118 50 0.15
ACGTcount: A:0.25, C:0.01, G:0.28, T:0.46
Consensus pattern (115 bp):
GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGTTTTTTAATTAAATTAGGTTAGGGTTAGA
GTTTTTAATTGGTTATGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAG
Done.