Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 66 of 79
Found at i:21744677 original size:24 final size:24
Alignment explanation
Indices: 21744649--21744698 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
21744639 ACTAGCATAG
* *
21744649 TATTT-TTTATTTTATCTTTTATTT
1 TATTTATTTA-TTTATCTATCATTT
21744673 TATTTATTTATTTATCTATCATTT
1 TATTTATTTATTTATCTATCATTT
21744697 TA
1 TA
21744699 ATATCATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (24 bp):
TATTTATTTATTTATCTATCATTT
Found at i:21745771 original size:17 final size:17
Alignment explanation
Indices: 21745749--21745793 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
21745739 CTTTATGAAC
21745749 TATTTTATTTATTTATT
1 TATTTTATTTATTTATT
*
21745766 TATTTTATTTATTTCTT
1 TATTTTATTTATTTATT
21745783 TACTTTT-TTTA
1 TA-TTTTATTTA
21745794 ATACTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (17 bp):
TATTTTATTTATTTATT
Found at i:21746014 original size:24 final size:24
Alignment explanation
Indices: 21745986--21746035 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
21745976 ACTAGCATAG
* *
21745986 TATTT-TTTATTTTATCTTTTATTT
1 TATTTATTTA-TTTATCTATCATTT
21746010 TATTTATTTATTTATCTATCATTT
1 TATTTATTTATTTATCTATCATTT
21746034 TA
1 TA
21746036 ATATCATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (24 bp):
TATTTATTTATTTATCTATCATTT
Found at i:21751785 original size:30 final size:30
Alignment explanation
Indices: 21751747--21751814 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 30
21751737 CTCTATGATT
*
21751747 GAGTTGAAAGCAAGACTAACTAAGATTGAT
1 GAGTTGAAAGCAAGACTAACTAAGATTGAA
* *
21751777 GATTTGAAAGCAAGGCTAACTAAGATTGAA
1 GAGTTGAAAGCAAGACTAACTAAGATTGAA
21751807 GAGTTGAA
1 GAGTTGAA
21751815 GAGAAAGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.43, C:0.09, G:0.25, T:0.24
Consensus pattern (30 bp):
GAGTTGAAAGCAAGACTAACTAAGATTGAA
Found at i:21754428 original size:41 final size:41
Alignment explanation
Indices: 21754371--21754453 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
21754361 GGGCCAGGAT
* *
21754371 ATTAGTTTCTTCAAGTGCAGTGGGAGGTGCTATGACCTGGC
1 ATTAGTTTCTTCAAGTGCAGTGGGAAGTGCTATAACCTGGC
21754412 ATTAGTTTCTTCAAGTGCAGTGGGAAGTGCTATAACCTGGC
1 ATTAGTTTCTTCAAGTGCAGTGGGAAGTGCTATAACCTGGC
21754453 A
1 A
21754454 AATGCAAGGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (41 bp):
ATTAGTTTCTTCAAGTGCAGTGGGAAGTGCTATAACCTGGC
Found at i:21758838 original size:225 final size:225
Alignment explanation
Indices: 21758413--21758863 Score: 816
Period size: 225 Copynumber: 2.0 Consensus size: 225
21758403 GATGTGTAGA
* * * *
21758413 TGTAAACTGAAAAATATATAAGATTTTTCCTATATAATTCATTACCTTTTTACTTAAATTTGTTG
1 TGTAAACGGAAAAATATATAAGATTTTTCCTATATAATTAATCACCTTTTTACTTAAAATTGTTG
21758478 TTAAAACCAAGTAATTGTTTAATAAATTAATGAAATATGGAAAAAATATGAAATTAGGACATAGA
66 TTAAAACCAAGTAATTGTTTAATAAATTAATGAAATATGG-AAAAATATGAAATTAGGACATAGA
21758543 AATTATTAAAATGTGATTTTATACCTTATTATATAGTCTTCATGCATAAAATGGCATATTTTATA
130 AATTATTAAAATGTGATTTTATACCTTATTATATAGTCTTCATGCATAAAATGGCATATTTTATA
21758608 TTAATTTGAGCATATTATATTTTTAAGCTAT
195 TTAATTTGAGCATATTATATTTTTAAGCTAT
*
21758639 TGTAAACGGAAAAATATA-AAGGATTTTTCTTATATAATTAATCACCTTTTTACTTAAAATTGTT
1 TGTAAACGGAAAAATATATAA-GATTTTTCCTATATAATTAATCACCTTTTTACTTAAAATTGTT
21758703 GTTAAAACCAAGTAATTGTTTAATAAATTAATGAAATATGTG-AAAATATGAAATTAGGACATAG
65 GTTAAAACCAAGTAATTGTTTAATAAATTAATGAAATATG-GAAAAATATGAAATTAGGACATAG
21758767 AAATTATTAAAATGTGATTTTATACCTTATTATATAGTCTTCATGCATAAAATGGCATATTTTAT
129 AAATTATTAAAATGTGATTTTATACCTTATTATATAGTCTTCATGCATAAAATGGCATATTTTAT
21758832 ATTAATTTGAGCATATTATATTTTTAAGCTAT
194 ATTAATTTGAGCATATTATATTTTTAAGCTAT
21758864 GAAGTGGGCC
Statistics
Matches: 218, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
225 121 0.56
226 96 0.44
227 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (225 bp):
TGTAAACGGAAAAATATATAAGATTTTTCCTATATAATTAATCACCTTTTTACTTAAAATTGTTG
TTAAAACCAAGTAATTGTTTAATAAATTAATGAAATATGGAAAAATATGAAATTAGGACATAGAA
ATTATTAAAATGTGATTTTATACCTTATTATATAGTCTTCATGCATAAAATGGCATATTTTATAT
TAATTTGAGCATATTATATTTTTAAGCTAT
Found at i:21759416 original size:7 final size:7
Alignment explanation
Indices: 21759400--21759457 Score: 57
Period size: 7 Copynumber: 8.3 Consensus size: 7
21759390 ACTTTTTCAA
*
21759400 TCATCCC
1 TCATCTC
*
21759407 TCATCAC
1 TCATCTC
21759414 TCATCCCTC
1 TCAT--CTC
21759423 TCATCTC
1 TCATCTC
21759430 TCATCTC
1 TCATCTC
21759437 TCATC-C
1 TCATCTC
21759443 TC-TCTC
1 TCATCTC
*
21759449 TCAACTC
1 TCATCTC
21759456 TC
1 TC
21759458 TTAGCTCTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
5 2 0.05
6 6 0.14
7 30 0.68
9 6 0.14
ACGTcount: A:0.16, C:0.48, G:0.00, T:0.36
Consensus pattern (7 bp):
TCATCTC
Found at i:21759432 original size:23 final size:24
Alignment explanation
Indices: 21759400--21759448 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
21759390 ACTTTTTCAA
21759400 TCATCCCTCATCACTCATCC-CTC
1 TCATCCCTCATCACTCATCCTCTC
* *
21759423 TCATCTCTCATCTCTCATCCTCTC
1 TCATCCCTCATCACTCATCCTCTC
21759447 TC
1 TC
21759449 TCAACTCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.14, C:0.49, G:0.00, T:0.37
Consensus pattern (24 bp):
TCATCCCTCATCACTCATCCTCTC
Found at i:21778919 original size:34 final size:35
Alignment explanation
Indices: 21778870--21778939 Score: 115
Period size: 34 Copynumber: 2.0 Consensus size: 35
21778860 CTATAATTTT
*
21778870 GAGGCCTTTTTCATTGTAATAAACATACATTATAA
1 GAGGCCTTGTTCATTGTAATAAACATACATTATAA
*
21778905 GAGGCC-TGTTCATTGTAATAAACCTACATTATAA
1 GAGGCCTTGTTCATTGTAATAAACATACATTATAA
21778939 G
1 G
21778940 CCAGTACCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
34 27 0.82
35 6 0.18
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (35 bp):
GAGGCCTTGTTCATTGTAATAAACATACATTATAA
Found at i:21779808 original size:30 final size:30
Alignment explanation
Indices: 21779774--21779872 Score: 105
Period size: 30 Copynumber: 3.3 Consensus size: 30
21779764 GAAATATGCG
21779774 AAAATATGAAATTAGGACATAGAAATTATT
1 AAAATATGAAATTAGGACATAGAAATTATT
* ** * *
21779804 AAAATGTGATTTTA-TACA-ATGAAA-TATGCG
1 AAAATATGAAATTAGGACATA-GAAATTAT--T
21779834 AAAATATGAAATTAGGACATAGAAATTATT
1 AAAATATGAAATTAGGACATAGAAATTATT
21779864 AAAATATGA
1 AAAATATGA
21779873 TTTTATAATT
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
28 4 0.08
29 7 0.13
30 31 0.58
31 7 0.13
32 4 0.08
ACGTcount: A:0.52, C:0.04, G:0.14, T:0.30
Consensus pattern (30 bp):
AAAATATGAAATTAGGACATAGAAATTATT
Found at i:21779834 original size:60 final size:60
Alignment explanation
Indices: 21779761--21779879 Score: 229
Period size: 60 Copynumber: 2.0 Consensus size: 60
21779751 TTAACAAATT
*
21779761 AATGAAATATGCGAAAATATGAAATTAGGACATAGAAATTATTAAAATGTGATTTTATAC
1 AATGAAATATGCGAAAATATGAAATTAGGACATAGAAATTATTAAAATATGATTTTATAC
21779821 AATGAAATATGCGAAAATATGAAATTAGGACATAGAAATTATTAAAATATGATTTTATA
1 AATGAAATATGCGAAAATATGAAATTAGGACATAGAAATTATTAAAATATGATTTTATA
21779880 ATTTATTATA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.50, C:0.04, G:0.14, T:0.32
Consensus pattern (60 bp):
AATGAAATATGCGAAAATATGAAATTAGGACATAGAAATTATTAAAATATGATTTTATAC
Found at i:21780498 original size:19 final size:19
Alignment explanation
Indices: 21780476--21780513 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
21780466 TGAATCATCC
21780476 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
21780495 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
21780514 ACCCTTTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:21783588 original size:94 final size:95
Alignment explanation
Indices: 21783423--21783728 Score: 281
Period size: 94 Copynumber: 3.3 Consensus size: 95
21783413 CAGTGAAACA
* * * * *
21783423 AATC-CTATACCCTTGAAGTTGTAATGGGTTGGATTGAACTTACCATAGCGAATCTTATCTCTCT
1 AATCTCTATACCCCTGAAGTTGCAGTGGGTTGAATTGAACTTACCATAGCAAATCTTATCTCTCT
* *
21783487 GAAGTTGCAGTGGATC-TGATTGAAGCTAC-
66 GAAGTTGCAGTGGAACAAGA-TGAAGCTACT
*
21783516 AATTTCTATACCCCTGAAGTTGCAGTGGGTCT-AATTGAA-TCTACCATAGCAAATCTTATCTC-
1 AATCTCTATACCCCTGAAGTTGCAGTGGGT-TGAATTGAACT-TACCATAGCAAATCTTATCTCT
21783578 CTTGAAGTTGCAGTGGAACAAGATGAAGCTACT
64 C-TGAAGTTGCAGTGGAACAAGATGAAGCTACT
* * * * * * * *
21783611 AATCT-TATGCCCCTGAAGTTGCAGTGATGTGGAA-TGAAGTT-GCAGTTGTAAATCTTATCTCC
1 AATCTCTATACCCCTGAAGTTGCAGTG-GGTTGAATTGAACTTACCA-TAGCAAATCTTATCTCT
* * * *
21783673 CTGAAGTTGTAGTGGAGCAAGATGAGGCTACA
64 CTGAAGTTGCAGTGGAACAAGATGAAGCTACT
** *
21783705 AATC-CTATATTCTTGAAGTTGCAG
1 AATCTCTATACCCCTGAAGTTGCAG
21783729 CGGAATAGAT
Statistics
Matches: 178, Mismatches: 23, Indels: 23
0.79 0.10 0.10
Matches are distributed among these distances:
93 7 0.04
94 158 0.89
95 13 0.07
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (95 bp):
AATCTCTATACCCCTGAAGTTGCAGTGGGTTGAATTGAACTTACCATAGCAAATCTTATCTCTCT
GAAGTTGCAGTGGAACAAGATGAAGCTACT
Found at i:21786443 original size:18 final size:19
Alignment explanation
Indices: 21786422--21786457 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
21786412 ATATATATAT
21786422 ATAAAATCAT-AAATTTTG
1 ATAAAATCATAAAATTTTG
*
21786440 ATAAAATTATAAAATTTT
1 ATAAAATCATAAAATTTT
21786458 ATTTCGTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (19 bp):
ATAAAATCATAAAATTTTG
Found at i:21793720 original size:115 final size:114
Alignment explanation
Indices: 21793588--21793816 Score: 404
Period size: 115 Copynumber: 2.0 Consensus size: 114
21793578 ACACACAGAT
*
21793588 TTTACGTGGAAACCCTTTCGGGAAAAAACCACGGGCAAAGGAGAAGAAAATTCACTATGTCAAAT
1 TTTACGTGGAAACCCTTTCGGGAAAAAACCACGGGCAAAGGAGAAGAAAATTCACTACGTCAAAT
* *
21793653 TCGAATTAATTACAATAGGAGTAGACTATGCCTATTTATAGGCTTGTAAA
66 TCGAATTAATTACAAGAGGAGTAGACT-TGCCTATTTATAGGCTTATAAA
* *
21793703 TTTACGTGGAAACCCTTTCGGGAAAAAACCACGGGCAGAGGAGAAGAAAATTCACTACGTCGAAT
1 TTTACGTGGAAACCCTTTCGGGAAAAAACCACGGGCAAAGGAGAAGAAAATTCACTACGTCAAAT
21793768 TCGAATTAATTACAAGAGGAGTAGACTTGCCTATTTATAGGCTTATAAA
66 TCGAATTAATTACAAGAGGAGTAGACTTGCCTATTTATAGGCTTATAAA
21793817 CCTTATTTTA
Statistics
Matches: 109, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
114 21 0.19
115 88 0.81
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (114 bp):
TTTACGTGGAAACCCTTTCGGGAAAAAACCACGGGCAAAGGAGAAGAAAATTCACTACGTCAAAT
TCGAATTAATTACAAGAGGAGTAGACTTGCCTATTTATAGGCTTATAAA
Found at i:21799275 original size:20 final size:20
Alignment explanation
Indices: 21799224--21799275 Score: 54
Period size: 22 Copynumber: 2.6 Consensus size: 20
21799214 AATTATTCTA
*
21799224 AAAATTAAAAAAAAAGCTTT
1 AAAATTAAAAAAAAAGCTAT
*
21799244 AAAATTTTAAAAAAAGAG-TAT
1 AAAA--TTAAAAAAAAAGCTAT
21799265 -AAATTAAAAAA
1 AAAATTAAAAAA
21799276 GTAAATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 8 0.29
20 7 0.25
21 2 0.07
22 11 0.39
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (20 bp):
AAAATTAAAAAAAAAGCTAT
Found at i:21800280 original size:13 final size:13
Alignment explanation
Indices: 21800264--21800316 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
21800254 TTTAAACTAA
21800264 ACTTTTCAAAAAT
1 ACTTTTCAAAAAT
*
21800277 ACTTCTCAAAAAT
1 ACTTTTCAAAAAT
* * * *
21800290 ATTTTTCTACAAC
1 ACTTTTCAAAAAT
21800303 ACTTTTCAAAAAT
1 ACTTTTCAAAAAT
21800316 A
1 A
21800317 ATGAAGAACT
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.43, C:0.19, G:0.00, T:0.38
Consensus pattern (13 bp):
ACTTTTCAAAAAT
Found at i:21801116 original size:18 final size:20
Alignment explanation
Indices: 21801093--21801129 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
21801083 TTCTTATAGG
21801093 TTTTTGAT-T-ATATCTATT
1 TTTTTGATATAATATCTATT
21801111 TTTTTGATATAATATCTAT
1 TTTTTGATATAATATCTAT
21801130 AATTAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 1 0.06
20 8 0.47
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (20 bp):
TTTTTGATATAATATCTATT
Found at i:21804565 original size:19 final size:18
Alignment explanation
Indices: 21804536--21804572 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
21804526 CACTGAAGGC
21804536 GAGGGTTGTTGCGGCGCT
1 GAGGGTTGTTGCGGCGCT
21804554 GAGGGCTTGTTGCGGCGCT
1 GAGGG-TTGTTGCGGCGCT
21804573 CCCTATTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.05, C:0.19, G:0.49, T:0.27
Consensus pattern (18 bp):
GAGGGTTGTTGCGGCGCT
Found at i:21805167 original size:45 final size:44
Alignment explanation
Indices: 21805114--21805211 Score: 133
Period size: 44 Copynumber: 2.2 Consensus size: 44
21805104 AAGACTTGTA
* **
21805114 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCA-CACCAATACAGGAAGACAAGATCTGCTT
* * *
21805159 TTTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGCTT
21805203 TCTTCGATC
1 TCTTCGATC
21805212 GATTCCACTG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 31 0.67
45 15 0.33
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (44 bp):
TCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGCTT
Found at i:21805461 original size:45 final size:44
Alignment explanation
Indices: 21805384--21805648 Score: 169
Period size: 44 Copynumber: 6.0 Consensus size: 44
21805374 TGTTGTATTT
* *
21805384 GATCTACTTCGCGCC-GATACATGAAGACAAGATCTGTTTTCTTC
1 GATCTACTTCACGCCAG-TACAGGAAGACAAGATCTGTTTTCTTC
* * * * * * *
21805428 GATCTGCTTCGC-CATCAGTACGGGAAGACAAGATCCGGTATCTTT
1 GATCTACTTCACGC--CAGTACAGGAAGACAAGATCTGTTTTCTTC
* *
21805473 GATCTACTTCACGCCAGTACATGAAGACAAGATCTATTTTCTTC
1 GATCTACTTCACGCCAGTACAGGAAGACAAGATCTGTTTTCTTC
* * * * * * *
21805517 GATCTACTCCACCACCAGTATAGGGAGACAAGATATG-TATATTC
1 GATCTACTTCA-CGCCAGTACAGGAAGACAAGATCTGTTTTCTTC
* * * * * * ** * *
21805561 GATCCACTTCGCTACC-GATATAGGAAGACAGGACCTACTATCTTT
1 GATCTACTTCAC-GCCAG-TACAGGAAGACAAGATCTGTTTTCTTC
* * *
21805606 GATCTACTTCACGCCAGTACATGAAGACAATATCTGCTTTCTT
1 GATCTACTTCACGCCAGTACAGGAAGACAAGATCTGTTTTCTT
21805649 TCAACCTGCT
Statistics
Matches: 167, Mismatches: 45, Indels: 18
0.73 0.20 0.08
Matches are distributed among these distances:
43 3 0.02
44 95 0.57
45 67 0.40
46 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (44 bp):
GATCTACTTCACGCCAGTACAGGAAGACAAGATCTGTTTTCTTC
Found at i:21805536 original size:89 final size:89
Alignment explanation
Indices: 21805381--21805550 Score: 245
Period size: 89 Copynumber: 1.9 Consensus size: 89
21805371 ATATGTTGTA
* * * * * *
21805381 TTTGATCTACTTCGCGCCGATACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCATCAG
1 TTTGATCTACTTCACGCCGATACATGAAGACAAGATCTATTTTCTTCGATCTACTCCACCACCAG
*
21805446 TA-CGGGAAGACAAGATCCGGTATC
66 TATAGGG-AGACAAGATCCGGTATC
21805470 TTTGATCTACTTCACGCC-AGTACATGAAGACAAGATCTATTTTCTTCGATCTACTCCACCACCA
1 TTTGATCTACTTCACGCCGA-TACATGAAGACAAGATCTATTTTCTTCGATCTACTCCACCACCA
21805534 GTATAGGGAGACAAGAT
65 GTATAGGGAGACAAGAT
21805551 ATGTATATTC
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
88 1 0.01
89 68 0.94
90 3 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (89 bp):
TTTGATCTACTTCACGCCGATACATGAAGACAAGATCTATTTTCTTCGATCTACTCCACCACCAG
TATAGGGAGACAAGATCCGGTATC
Found at i:21816860 original size:18 final size:18
Alignment explanation
Indices: 21816829--21816879 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
21816819 TAAATGATTT
*
21816829 TTTTATTAAGTAATAATA
1 TTTTATTAAATAATAATA
*
21816847 TTTTAATAAATAATAATA
1 TTTTATTAAATAATAATA
*
21816865 TTTTATTAATTAATA
1 TTTTATTAAATAATA
21816880 TTATAATACA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
TTTTATTAAATAATAATA
Found at i:21818566 original size:25 final size:24
Alignment explanation
Indices: 21818520--21818573 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
21818510 GGCCCGGCCC
* *
21818520 ATTTTAAAATAAATATTAAAAAATT
1 ATTTTAAAATAAAAAATAAAAAA-T
21818545 ATTTTAAAAATAAAAAAT-AAAAAT
1 ATTTT-AAAATAAAAAATAAAAAAT
21818569 ATTTT
1 ATTTT
21818574 GAAAGTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 6 0.23
25 10 0.38
26 10 0.38
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (24 bp):
ATTTTAAAATAAAAAATAAAAAAT
Found at i:21821042 original size:22 final size:23
Alignment explanation
Indices: 21821010--21821071 Score: 85
Period size: 22 Copynumber: 2.8 Consensus size: 23
21821000 TTATGCACTA
21821010 TTAAACAGAGAGCACTAAA-GTG
1 TTAAACAGAGAGCACTAAATGTG
*
21821032 TTATACAGAGAGCAC-AAATGTG
1 TTAAACAGAGAGCACTAAATGTG
21821054 TTAAAC-GAAGAGCACTAA
1 TTAAACAG-AGAGCACTAA
21821072 CGTGCTAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 4 0.11
22 29 0.83
23 2 0.06
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (23 bp):
TTAAACAGAGAGCACTAAATGTG
Found at i:21821096 original size:25 final size:25
Alignment explanation
Indices: 21821062--21821109 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
21821052 TGTTAAACGA
21821062 AGAGCACTAACGTGCTAATAATCGG
1 AGAGCACTAACGTGCTAATAATCGG
21821087 AGAGCACTAACGTGCTAATAATC
1 AGAGCACTAACGTGCTAATAATC
21821110 ATAGAGCGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (25 bp):
AGAGCACTAACGTGCTAATAATCGG
Found at i:21821115 original size:25 final size:25
Alignment explanation
Indices: 21821062--21821116 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
21821052 TGTTAAACGA
*
21821062 AGAGCACTAACGTGCTAATAATCGG
1 AGAGCACTAACGTGCTAATAATCAG
*
21821087 AGAGCACTAACGTGCTAATAATCAT
1 AGAGCACTAACGTGCTAATAATCAG
21821112 AGAGC
1 AGAGC
21821117 GCGCTAAGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (25 bp):
AGAGCACTAACGTGCTAATAATCAG
Found at i:21829707 original size:126 final size:126
Alignment explanation
Indices: 21829482--21829710 Score: 406
Period size: 126 Copynumber: 1.8 Consensus size: 126
21829472 ATTATTTCGA
* *
21829482 GTTGAAGTTTCTGGTCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGGGAAGAAATTGT
1 GTTGAAGTTTCTGGTCAAATAGTATAAAATCGCTTCTACCAGGATGCAATTTGAGAAGAAATTGT
*
21829547 GAAATCGCGCCCTTGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
66 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
*
21829608 GTTGATGTTTCTGAG-CAAATAGTATAAAATCGCTTCTACCAGGATGCAATTTGAGAAGAAATTG
1 GTTGAAGTTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAGGATGCAATTTGAGAAGAAATTG
21829672 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
65 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
21829711 CAAGTTTGGG
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
126 97 0.99
127 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (126 bp):
GTTGAAGTTTCTGGTCAAATAGTATAAAATCGCTTCTACCAGGATGCAATTTGAGAAGAAATTGT
GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
Found at i:21829796 original size:24 final size:23
Alignment explanation
Indices: 21829753--21829800 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
21829743 AAATGTTCTT
* *
21829753 AGAATGCATAAGTTATAGCAGAAA
1 AGAATGCATAAGTCACAGCA-AAA
21829777 AGAATGCATAAGTCACAGCAAAA
1 AGAATGCATAAGTCACAGCAAAA
21829800 A
1 A
21829801 CAAGTTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.52, C:0.12, G:0.19, T:0.17
Consensus pattern (23 bp):
AGAATGCATAAGTCACAGCAAAA
Found at i:21832848 original size:10 final size:10
Alignment explanation
Indices: 21832833--21832857 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
21832823 CAAATCTAAC
21832833 ATTATGTAAA
1 ATTATGTAAA
21832843 ATTATGTAAA
1 ATTATGTAAA
21832853 ATTAT
1 ATTAT
21832858 TAAGCCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:21832944 original size:54 final size:54
Alignment explanation
Indices: 21832839--21832995 Score: 208
Period size: 56 Copynumber: 2.8 Consensus size: 54
21832829 TAACATTATG
21832839 TAAAATTATGTAAAATTATTAAGCCAAAAAAATTGTGTTAATGGTTAGTAAAA-TTA
1 TAAAA-TATGTAAAATTATTAAGCC--AAAAATTGTGTTAATGGTTAGTAAAATTTA
*
21832895 TCAAAATATGTAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTA
1 T-AAAATATGTAAAATTATTAAGCCAAAAATTGTGTTAATGGTTAGTAAAATTTA
* ** *
21832950 TGAAATAAACTAAAATTATTAAGTCTAAAAATTGTGTTAATGGTTA
1 TAAAAT-ATGTAAAATTATTAAG-CCAAAAATTGTGTTAATGGTTA
21832996 CGGTTAAGGT
Statistics
Matches: 91, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
54 29 0.32
55 18 0.20
56 40 0.44
57 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.36
Consensus pattern (54 bp):
TAAAATATGTAAAATTATTAAGCCAAAAATTGTGTTAATGGTTAGTAAAATTTA
Found at i:21833147 original size:28 final size:28
Alignment explanation
Indices: 21833012--21833307 Score: 376
Period size: 29 Copynumber: 10.4 Consensus size: 28
21833002 AGGTTAGGGT
* *
21833012 TTAAGTTAGGTTAGGGTTAGGATTTTTAA
1 TTAATTTAGGTTA-GGTTAGGGTTTTTAA
* *
21833041 TTAATTTAGGTTAAGGTTAAGGTTTTTAG
1 TTAATTTAGGTT-AGGTTAGGGTTTTTAA
* *
21833070 TTAAGTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAATTTAGGTTA-GGTTAGGGTTTTTAA
* *
21833099 TTAATTTAGGTTTGCTTTAGGGTTTTTAA
1 TTAATTTAGGTTAG-GTTAGGGTTTTTAA
* *
21833128 TTAATTTAGGTTAGATTAGGGTTTTTAG
1 TTAATTTAGGTTAGGTTAGGGTTTTTAA
21833156 TTAATTTAGGTTAGGTTTAGGGTTTTTAA
1 TTAATTTAGGTTAGG-TTAGGGTTTTTAA
* * *
21833185 TTAATTTAGGTTAGATTAGGATTTTAAA
1 TTAATTTAGGTTAGGTTAGGGTTTTTAA
21833213 TTAATTTAGGTTAGGTTTAGGGTTTTTAA
1 TTAATTTAGGTTAGG-TTAGGGTTTTTAA
* * *
21833242 TTAATTTAGGTTAGATTAGGATTTTAAA
1 TTAATTTAGGTTAGGTTAGGGTTTTTAA
*
21833270 TTAATTTAGGTTAGGTTAGGGTTTTCAA
1 TTAATTTAGGTTAGGTTAGGGTTTTTAA
*
21833298 TTAAATTAGG
1 TTAATTTAGG
21833308 GTTTTTATTT
Statistics
Matches: 234, Mismatches: 28, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
28 98 0.42
29 135 0.58
30 1 0.00
ACGTcount: A:0.27, C:0.01, G:0.24, T:0.48
Consensus pattern (28 bp):
TTAATTTAGGTTAGGTTAGGGTTTTTAA
Found at i:21833175 original size:57 final size:57
Alignment explanation
Indices: 21833012--21833307 Score: 407
Period size: 57 Copynumber: 5.2 Consensus size: 57
21833002 AGGTTAGGGT
* * * *
21833012 TTAAGTTAGGTTAGGGTTAGGATTTTTAATTAATTTAGGTTAAGG-TTAAGGTTTTTAG
1 TTAATTTAGGTTA-GATTAGGATTTTTAATTAATTTAGGTT-AGGTTTAGGGTTTTTAA
* * * * * *
21833070 TTAAGTTAGGTTAGGGTTAGGGTTTTTAGTTAATTTAGGTTTGCTTTAGGGTTTTTAA
1 TTAATTTAGGTTA-GATTAGGATTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAA
* *
21833128 TTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAA
1 TTAATTTAGGTTAGATTAGGATTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAA
*
21833185 TTAATTTAGGTTAGATTAGGATTTTAAATTAATTTAGGTTAGGTTTAGGGTTTTTAA
1 TTAATTTAGGTTAGATTAGGATTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAA
* *
21833242 TTAATTTAGGTTAGATTAGGATTTTAAATTAATTTAGGTTAGG-TTAGGGTTTTCAA
1 TTAATTTAGGTTAGATTAGGATTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAA
*
21833298 TTAAATTAGG
1 TTAATTTAGG
21833308 GTTTTTATTT
Statistics
Matches: 222, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
56 21 0.09
57 139 0.63
58 62 0.28
ACGTcount: A:0.27, C:0.01, G:0.24, T:0.48
Consensus pattern (57 bp):
TTAATTTAGGTTAGATTAGGATTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAA
Found at i:21833385 original size:26 final size:25
Alignment explanation
Indices: 21833355--21833403 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
21833345 CTTCAAAAAT
21833355 TTCTATGCGTATTACATCAAATAAAC
1 TTCTAT-CGTATTACATCAAATAAAC
**
21833381 TTCTATTTTATTACATCAAATAA
1 TTCTATCGTATTACATCAAATAA
21833404 TAAATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (25 bp):
TTCTATCGTATTACATCAAATAAAC
Found at i:21833976 original size:18 final size:18
Alignment explanation
Indices: 21833932--21833977 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
21833922 TATTCGGAAA
* *
21833932 AGGATACATGTAAGGGTT
1 AGGATACATATAAGGGCT
*
21833950 AGGGTACATATAAGGGCT
1 AGGATACATATAAGGGCT
*
21833968 AGGAAACATA
1 AGGATACATA
21833978 CCTGGCATCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.30, T:0.22
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:21834614 original size:7 final size:7
Alignment explanation
Indices: 21834602--21834626 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
21834592 TTACATATAT
21834602 AATACTA
1 AATACTA
21834609 AATACTA
1 AATACTA
21834616 AATACTA
1 AATACTA
21834623 AATA
1 AATA
21834627 TCAATCCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:21835617 original size:25 final size:25
Alignment explanation
Indices: 21835567--21835622 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
21835557 CTTTTATAAC
*
21835567 AAATAATAAATTAATAATTATCTAA
1 AAATAATAAATTAATAAATATCTAA
*
21835592 AAATACATAAA-TAA-AAATATCT-T
1 AAATA-ATAAATTAATAAATATCTAA
21835615 AAATAATA
1 AAATAATA
21835623 TTTAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 3 0.11
23 5 0.18
24 7 0.25
25 8 0.29
26 5 0.18
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (25 bp):
AAATAATAAATTAATAAATATCTAA
Found at i:21835752 original size:31 final size:30
Alignment explanation
Indices: 21835713--21835779 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 30
21835703 GCCATTGATG
21835713 AAAATATAAAAAAATTTAAAATTATTTTTAA
1 AAAATATAAAAAAATTTAAAATTA-TTTTAA
* * *
21835744 CAAATATAAAAAAGTTTATAATTATTTTAA
1 AAAATATAAAAAAATTTAAAATTATTTTAA
21835774 AAAATA
1 AAAATA
21835780 GATTTGAGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 11 0.34
31 21 0.66
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (30 bp):
AAAATATAAAAAAATTTAAAATTATTTTAA
Found at i:21835881 original size:24 final size:22
Alignment explanation
Indices: 21835834--21835877 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
21835824 AAATATGGGT
*
21835834 TTGAGACAATTTTGGAAGGAAA
1 TTGAGACAATTTTAGAAGGAAA
*
21835856 TTGAGAGAATTTTAGAAGGAAA
1 TTGAGACAATTTTAGAAGGAAA
21835878 AATTAGATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.02, G:0.27, T:0.27
Consensus pattern (22 bp):
TTGAGACAATTTTAGAAGGAAA
Found at i:21853761 original size:7 final size:7
Alignment explanation
Indices: 21853749--21853773 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
21853739 CAATTAAAAC
21853749 AATTAAT
1 AATTAAT
21853756 AATTAAT
1 AATTAAT
21853763 AATTAAT
1 AATTAAT
21853770 AATT
1 AATT
21853774 TTTTGTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AATTAAT
Found at i:21860569 original size:5 final size:5
Alignment explanation
Indices: 21860559--21860631 Score: 146
Period size: 5 Copynumber: 14.6 Consensus size: 5
21860549 NNNNNNNNNN
21860559 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
21860609 ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATA
21860632 CCCAATTAGG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 68 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:21863939 original size:560 final size:561
Alignment explanation
Indices: 21862880--21864000 Score: 2235
Period size: 560 Copynumber: 2.0 Consensus size: 561
21862870 TCTTTTCACC
21862880 AAAAAAAAAAAGTCTTGATAACAGGAAGGGTAAATGTTCATATTAGGGCTCAACTTTTTAGAGGT
1 AAAAAAAAAAAGTCTTGATAACAGGAAGGGTAAATGTTCATATTAGGGCTCAACTTTTTAGAGGT
21862945 TGCTCACATAAGAGCCAAATCTTTCAAAATGATCAAATAAGGGACTAACTTTTACAGAAGTGCTC
66 TGCTCACATAAGAGCCAAATCTTTCAAAATGATCAAATAAGGGACTAACTTTTACAGAAGTGCTC
21863010 AAATAAGGGCTTTTCACGCACTTTGGCCCAATTTGTAGAAAAAAAATAGGTAAATACTAACATGA
131 AAATAAGGGCTTTTCACGCACTTTGGCCCAATTTGTAGAAAAAAAATAGGTAAATACTAACATGA
21863075 TTAGAATAAAATAGTTAACACTCGAATTAGATATTATTTGAAAAGAAAAGAAGAATTTAGAACAT
196 TTAGAATAAAATAGTTAACACTCGAATTAGATATTATTTGAAAAGAAAAGAAGAATTTAGAACAT
21863140 AAATTGAAACATGATATACGACATTTGGGAAGCCCTTATTCGAGCACTTTTGAAAAGGTTTGATC
261 AAATTGAAACATGATATACGACATTTGGGAAGCCCTTATTCGAGCACTTTTGAAAAGGTTTGATC
21863205 CTTATTTGAGCACTTTCGAAAAGATTAGGCTATTCTTTGACATTTTTTAGTGGTTTGGCCATCAT
326 CTTATTTGAGCACTTTCGAAAAGATTAGGCTATTCTTTGACATTTTTTAGTGGTTTGGCCATCAT
21863270 TTGAGAAAATTTATAAATGTTAGGGCCTTATATGTCTATTTTGAAAATTTTAATCCTTATGTGAG
391 TTGAGAAAATTTATAAATGTTAGGGCCTTATATGTCTATTTTGAAAATTTTAATCCTTATGTGAG
21863335 CAATGATTTGCCGTAATTCAGTGTAGCAGATTAAAATAGTTTTCGCATTTAAGGAGCTTGAATAC
456 CAATGATTTGCCGTAATTCAGTGTAGCAGATTAAAATAGTTTTCGCATTTAAGGAGCTTGAATAC
21863400 AATCATTTTTAGTATGTTTTAGTTAAG-TTTCTTAGTTTTA
521 AATCATTTTTAGTATGTTTTAGTTAAGTTTTCTTAGTTTTA
21863440 AAAAAAAAAAAGTCTTGATAACAGGAAGGGTAAATGTTCATATTAGGGCTCAACTTTTTAGAGGT
1 AAAAAAAAAAAGTCTTGATAACAGGAAGGGTAAATGTTCATATTAGGGCTCAACTTTTTAGAGGT
21863505 TGCTCACATAAGAGCCAAATCTTTCAAAATGATCAAATAAGGGACTAACTTTTACAGAAGTGCTC
66 TGCTCACATAAGAGCCAAATCTTTCAAAATGATCAAATAAGGGACTAACTTTTACAGAAGTGCTC
21863570 AAATAAGGGCTTTTCACGCACTTTGGCCCAATTTGTAGAAAAAAAATAGGTAAATACTAACATGA
131 AAATAAGGGCTTTTCACGCACTTTGGCCCAATTTGTAGAAAAAAAATAGGTAAATACTAACATGA
21863635 TTAGAATAAAATAGTTAACACTCGAATTAGATATTATTTGAAAAGAAAAGAAGAATTTAGAACAT
196 TTAGAATAAAATAGTTAACACTCGAATTAGATATTATTTGAAAAGAAAAGAAGAATTTAGAACAT
21863700 AAATTGAAACATGATATACGACATTTGGGAAGCCCTTATTCGAGCACTTTTGAAAAGGTTTGATC
261 AAATTGAAACATGATATACGACATTTGGGAAGCCCTTATTCGAGCACTTTTGAAAAGGTTTGATC
21863765 CTTATTTGAGCACTTTCGAAAAGATTAGGCTATTCTTTGACATTTTTTAGTGGTTTGGCCATCAT
326 CTTATTTGAGCACTTTCGAAAAGATTAGGCTATTCTTTGACATTTTTTAGTGGTTTGGCCATCAT
21863830 TTGAGAAAATTTATAAATGTTAGGGCCTTATATGTCTATTTTGAAAATTTTAATCCTTATGTGAG
391 TTGAGAAAATTTATAAATGTTAGGGCCTTATATGTCTATTTTGAAAATTTTAATCCTTATGTGAG
21863895 CAATGATTTGCCGTAATTCAGTGTAGCAGATTAAAATAGTTTTCGCATTTAAGGAGCTTGAATAC
456 CAATGATTTGCCGTAATTCAGTGTAGCAGATTAAAATAGTTTTCGCATTTAAGGAGCTTGAATAC
21863960 AATCATTTTTAGTATGTTTTAGTTAAGTTTTCTTAGTTTTA
521 AATCATTTTTAGTATGTTTTAGTTAAGTTTTCTTAGTTTTA
21864001 TTTATATTCA
Statistics
Matches: 560, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
560 547 0.98
561 13 0.02
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.34
Consensus pattern (561 bp):
AAAAAAAAAAAGTCTTGATAACAGGAAGGGTAAATGTTCATATTAGGGCTCAACTTTTTAGAGGT
TGCTCACATAAGAGCCAAATCTTTCAAAATGATCAAATAAGGGACTAACTTTTACAGAAGTGCTC
AAATAAGGGCTTTTCACGCACTTTGGCCCAATTTGTAGAAAAAAAATAGGTAAATACTAACATGA
TTAGAATAAAATAGTTAACACTCGAATTAGATATTATTTGAAAAGAAAAGAAGAATTTAGAACAT
AAATTGAAACATGATATACGACATTTGGGAAGCCCTTATTCGAGCACTTTTGAAAAGGTTTGATC
CTTATTTGAGCACTTTCGAAAAGATTAGGCTATTCTTTGACATTTTTTAGTGGTTTGGCCATCAT
TTGAGAAAATTTATAAATGTTAGGGCCTTATATGTCTATTTTGAAAATTTTAATCCTTATGTGAG
CAATGATTTGCCGTAATTCAGTGTAGCAGATTAAAATAGTTTTCGCATTTAAGGAGCTTGAATAC
AATCATTTTTAGTATGTTTTAGTTAAGTTTTCTTAGTTTTA
Found at i:21866947 original size:6 final size:6
Alignment explanation
Indices: 21866936--21866965 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
21866926 GAGCATCTAT
21866936 GAAAAG GAAAAG GAAAAG GAAAAG GAAAAG
1 GAAAAG GAAAAG GAAAAG GAAAAG GAAAAG
21866966 AATGCTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (6 bp):
GAAAAG
Found at i:21872040 original size:20 final size:21
Alignment explanation
Indices: 21871996--21872046 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
21871986 TGTCAATCCT
* * *
21871996 ATGAATAGTGGGGTCAAGTTC
1 ATGAACAGTGGAGTCAAGATC
21872017 ATGAACAGTGGAGTCAA-ATC
1 ATGAACAGTGGAGTCAAGATC
21872037 ATGAACAGTG
1 ATGAACAGTG
21872047 ATAGTATGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 12 0.44
21 15 0.56
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (21 bp):
ATGAACAGTGGAGTCAAGATC
Found at i:21873899 original size:3 final size:3
Alignment explanation
Indices: 21873891--21873924 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
21873881 TTAAGTACCT
*
21873891 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
21873925 ATAATGCAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:21878380 original size:24 final size:22
Alignment explanation
Indices: 21878352--21878437 Score: 60
Period size: 24 Copynumber: 3.9 Consensus size: 22
21878342 GATAGTGCTT
21878352 TATTAATTTAATATTAATATCAAA
1 TATTAATTTAATATTAATAT--AA
21878376 TATTACA-TTAA-ATTAA-AT-A
1 TATTA-ATTTAATATTAATATAA
21878395 T-TT-ATTTAGATATTAATATGAGA
1 TATTAATTTA-ATATTAATAT-A-A
21878418 TATTAAATTTAAT-TTAATAT
1 TATT-AATTTAATATTAATAT
21878438 TTATCTAGAT
Statistics
Matches: 51, Mismatches: 0, Indels: 22
0.70 0.00 0.30
Matches are distributed among these distances:
16 1 0.02
17 3 0.06
18 3 0.06
19 7 0.14
20 2 0.04
22 2 0.04
23 7 0.14
24 18 0.35
25 3 0.06
26 5 0.10
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (22 bp):
TATTAATTTAATATTAATATAA
Found at i:21878386 original size:103 final size:103
Alignment explanation
Indices: 21878271--21878472 Score: 307
Period size: 103 Copynumber: 2.0 Consensus size: 103
21878261 TAATGAATTT
*
21878271 AATATTAAATTAAATTTAAA-ATTTATCTAGATACTAATATGAGATATTTAATTTAATTTAATAC
1 AATATTAAATTAAA-TTAAATATTTATCTAGATACTAATATGAGATATTAAATTTAATTTAATAC
* *
21878335 TTATCTAGATAGTGCTTTATTAATTTAATATTAATATCA
65 TTATCTAGATAATACTTTATTAATTTAATATTAATATCA
* * * *
21878374 AATATTACATTAAATTAAATATTTATTTAGATATTAATATGAGATATTAAATTTAATTTAATATT
1 AATATTAAATTAAATTAAATATTTATCTAGATACTAATATGAGATATTAAATTTAATTTAATACT
* *
21878439 TATCTAGATAATATTTTGTTAATTTAATATTAAT
66 TATCTAGATAATACTTTATTAATTTAATATTAAT
21878473 GTGATTAATT
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
102 5 0.06
103 84 0.94
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.48
Consensus pattern (103 bp):
AATATTAAATTAAATTAAATATTTATCTAGATACTAATATGAGATATTAAATTTAATTTAATACT
TATCTAGATAATACTTTATTAATTTAATATTAATATCA
Found at i:21878408 original size:42 final size:42
Alignment explanation
Indices: 21878352--21878448 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
21878342 GATAGTGCTT
* *
21878352 TATTAATTTA-ATATTAATATCAAATATTACATTAAATTAAA
1 TATTTATTTAGATATTAATATCAAATATTAAATTAAATTAAA
* * * *
21878393 TATTTATTTAGATATTAATATGAGATATTAAATTTAATTTAA
1 TATTTATTTAGATATTAATATCAAATATTAAATTAAATTAAA
*
21878435 TATTTATCTAGATA
1 TATTTATTTAGATA
21878449 ATATTTTGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 9 0.19
42 39 0.81
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.47
Consensus pattern (42 bp):
TATTTATTTAGATATTAATATCAAATATTAAATTAAATTAAA
Found at i:21879600 original size:38 final size:37
Alignment explanation
Indices: 21879548--21879622 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 37
21879538 GGTTTAACCT
21879548 TACAATCTCCCTTAAGATTTATACCCCAAAATCTTAAGA
1 TACAATCTCCCTTAAGATTTATA-CCC-AAATCTTAAGA
* *
21879587 TACAA-CTCCCTTAAGGTTTCTACCCAAATCTTAAGA
1 TACAATCTCCCTTAAGATTTATACCCAAATCTTAAGA
21879623 ATTAACCCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
36 11 0.32
37 3 0.09
38 15 0.44
39 5 0.15
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.31
Consensus pattern (37 bp):
TACAATCTCCCTTAAGATTTATACCCAAATCTTAAGA
Found at i:21879816 original size:28 final size:28
Alignment explanation
Indices: 21879779--21879838 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
21879769 TACTAGCAGG
21879779 CCTAAACCCACCCAAGC-CCAAACTAAA
1 CCTAAACCCACCCAAGCTCCAAACTAAA
* *
21879806 CCTAATACCCACCTAAGCTCCAAACTAAC
1 CCTAA-ACCCACCCAAGCTCCAAACTAAA
21879835 CCTA
1 CCTA
21879839 GCCCAGCAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 5 0.17
28 11 0.38
29 13 0.45
ACGTcount: A:0.40, C:0.43, G:0.03, T:0.13
Consensus pattern (28 bp):
CCTAAACCCACCCAAGCTCCAAACTAAA
Found at i:21881045 original size:16 final size:17
Alignment explanation
Indices: 21881026--21881059 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
21881016 TTTTTTTTTA
21881026 CTTTT-TTTATATATAC
1 CTTTTATTTATATATAC
21881042 CTTTTACTTTATATATAC
1 CTTTTA-TTTATATATAC
21881060 ATATATGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
18 11 0.69
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (17 bp):
CTTTTATTTATATATAC
Found at i:21881264 original size:2 final size:2
Alignment explanation
Indices: 21881246--21881284 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
21881236 TTTTAACTTT
* *
21881246 TA TA TA TT TA TA T- TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21881285 CATTTCTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:21883457 original size:20 final size:20
Alignment explanation
Indices: 21883432--21883471 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
21883422 TTCACCTCAT
21883432 GCATCGCATCATATACATTA
1 GCATCGCATCATATACATTA
*
21883452 GCATCGCATCATATGCATTA
1 GCATCGCATCATATACATTA
21883472 AAGACCTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (20 bp):
GCATCGCATCATATACATTA
Found at i:21887312 original size:44 final size:44
Alignment explanation
Indices: 21887262--21887515 Score: 222
Period size: 44 Copynumber: 5.7 Consensus size: 44
21887252 TACTGGTGGC
* * *
21887262 GAAGTAGATCCAAGAAAGCAGATCTTTTCTTTATGTATTGGCGT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT
* * * *** * *
21887306 GAAGTAGATCGAAGATACCAGATCTTGTCTCCCCATACTGGTGGT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
*** * * *
21887351 GGAA-TAGATCGAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
* * * * *
21887396 GAAGTAGATCGAAGAGAGCAAATATTATCTTTATGTATTGGCGT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT
* * * * *
21887440 AAAGCAGATTGAATAAAACAGATCTTGTCTTCATGTATTGGCGT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT
*
21887484 GAAGTAGATTGAAGAAAGCAGATCTTGTCTTC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
21887516 CCATACTGGT
Statistics
Matches: 167, Mismatches: 40, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
44 97 0.58
45 67 0.40
46 3 0.02
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (44 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT
Found at i:21887462 original size:134 final size:133
Alignment explanation
Indices: 21887236--21887543 Score: 420
Period size: 134 Copynumber: 2.3 Consensus size: 133
21887226 TGAATACAAA
* * * *
21887236 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCCAAGAAAGCAGATCTTTTCTTTATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAGCAAATATTATCTTTATGTATT
* * * * * *
21887301 GGCGTGAAGTAGATCGAAGATACCAGATCTTGTCTCCCCATACTGGTGGTGGAA-TAGATCGAAG
66 GGCGTAAAGCAGATCGAAGAAAACAGATCTTGTCTCCACATACTGG-CGT-GAAGTAGATCGAAG
21887365 AAAGC
129 AAAGC
* *
21887370 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAGAGCAAATATTATCTTTATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAGCAAATATTATCTTTATGTATT
* * * ** * *
21887435 GGCGTAAAGCAGATTGAATAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATTGAAGAA
66 GGCGTAAAGCAGATCGAAGAAAACAGATCTTGTCTCCACATACTGGCGTGAAGTAGATCGAAGAA
21887500 AGC
131 AGC
21887503 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGA
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGA
21887544 TAACAGGTCC
Statistics
Matches: 154, Mismatches: 19, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
132 3 0.02
133 56 0.36
134 95 0.62
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (133 bp):
AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAGCAAATATTATCTTTATGTATT
GGCGTAAAGCAGATCGAAGAAAACAGATCTTGTCTCCACATACTGGCGTGAAGTAGATCGAAGAA
AGC
Found at i:21887549 original size:89 final size:90
Alignment explanation
Indices: 21887236--21887632 Score: 335
Period size: 89 Copynumber: 4.5 Consensus size: 90
21887226 TGAATACAAA
* * * *
21887236 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCCAAGAAAGCAGATCTTTTCTTTATGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATT
* *
21887301 GG-CGTGAAGTAGATCGAAGATACC
66 GGTCGCGAAGTAGATCGAAGATAGC
* * ** *
21887325 AGATCTTGTCTCCCCATACTGGTGGTGGAA-TAGATCGAAGAAAGCAGATCTTGTCTTCCCATAC
1 AGATCTTGTCTTCCCATACTGGTGG-CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATAT
* *
21887389 TGGTGGCGAAGTAGATCGAAGAGAGC
65 TGGTCGCGAAGTAGATCGAAGATAGC
* * * * * ** * * * * *
21887415 AAATATTATCTT--TAT-GTATTGGCGTAAAGCAGATTGAATAAAACAGATCTTGTCTTCATGTA
1 AGATCTTGTCTTCCCATACTGGTGGCG--AAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATA
* * *
21887477 TTGG-CGTGAAGTAGATTGAAGAAAGC
64 TTGGTCGCGAAGTAGATCGAAGATAGC
* * * *
21887503 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGATAA-CAGGTCCTG-CATTCCTATA
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTC-TTCATATA
* * * *
21887566 TCGGTAGCGAAGTGGATCGAATATA-C
64 TTGGTCGCGAAGTAGATCGAAGATAGC
* * *
21887592 AGATCTTATCTTTCCATACTGGTGGTGAAGTAGATCGAAGA
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
21887633 TACAAGTCTT
Statistics
Matches: 237, Mismatches: 60, Indels: 22
0.74 0.19 0.07
Matches are distributed among these distances:
86 1 0.00
87 4 0.02
88 32 0.14
89 147 0.62
90 47 0.20
91 6 0.03
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (90 bp):
AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATT
GGTCGCGAAGTAGATCGAAGATAGC
Found at i:21887646 original size:44 final size:45
Alignment explanation
Indices: 21887235--21887642 Score: 209
Period size: 45 Copynumber: 9.2 Consensus size: 45
21887225 TTGAATACAA
* * * *
21887235 AAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCCAAGAAAGC
1 AAGATCTTGTCTTTCCATACTGGTGGTGAAGTAGATCGAAGATA-C
* *** * *
21887281 -AGATCTTTTCTTTATGTATTGG-CGTGAAGTAGATCGAAGATAC
1 AAGATCTTGTCTTTCCATACTGGTGGTGAAGTAGATCGAAGATAC
* ** *
21887324 CAGATCTTGTCTCCCCATACTGGTGGTGGAA-TAGATCGAAGAAAGC
1 AAGATCTTGTCTTTCCATACTGGTGGT-GAAGTAGATCGAAGATA-C
* * *
21887370 -AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAGAGC
1 AAGATCTTGTCTTTCCATACTGGTGGTGAAGTAGATCGAAGATA-C
* * *** * * * * * * *
21887415 AA-ATATTATCTTTATGTATTGG-CGTAAAGCAGATTGAATA-AA
1 AAGATCTTGTCTTTCCATACTGGTGGTGAAGTAGATCGAAGATAC
* * * *
21887457 ACAGATCTTGTC-TT-CATGTATTGG-CGTGAAGTAGATTGAAGAAAGC
1 A-AGATCTTGTCTTTCCA--TACTGGTGGTGAAGTAGATCGAAGATA-C
* * *
21887503 -AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGATA-
1 AAGATCTTGTCTTTCCATACTGGTGGTGAAGTAGATCGAAGATAC
* * * * * * *
21887546 ACAGGTCCTG-CATTCCTATA-TCGGTAGCGAAGTGGATCGAATATAC
1 A-AGATCTTGTCTTTCC-ATACT-GGTGGTGAAGTAGATCGAAGATAC
*
21887592 -AGATCTTATCTTTCCATACTGGTGGTGAAGTAGATCGAAGATAC
1 AAGATCTTGTCTTTCCATACTGGTGGTGAAGTAGATCGAAGATAC
21887636 AAG-TCTT
1 AAGATCTT
21887643 ATCTCCCTGA
Statistics
Matches: 272, Mismatches: 67, Indels: 48
0.70 0.17 0.12
Matches are distributed among these distances:
42 1 0.00
43 5 0.02
44 125 0.46
45 134 0.49
46 7 0.03
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (45 bp):
AAGATCTTGTCTTTCCATACTGGTGGTGAAGTAGATCGAAGATAC
Found at i:21892493 original size:3 final size:3
Alignment explanation
Indices: 21892485--21892510 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
21892475 TTGCTAGGAA
21892485 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
21892511 AAAATAGGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:21894940 original size:24 final size:25
Alignment explanation
Indices: 21894908--21894968 Score: 97
Period size: 24 Copynumber: 2.5 Consensus size: 25
21894898 ACAATTGCAA
* *
21894908 TTCAGATACATAATCAGATG-TAAT
1 TTCATATACATAATCAGATGCAAAT
21894932 TTCATATACATAATCAGATGCAAAT
1 TTCATATACATAATCAGATGCAAAT
21894957 TTCATATACATA
1 TTCATATACATA
21894969 TTCATATCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
24 19 0.56
25 15 0.44
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (25 bp):
TTCATATACATAATCAGATGCAAAT
Found at i:21896687 original size:14 final size:14
Alignment explanation
Indices: 21896668--21896697 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
21896658 CCATGATTCC
21896668 ACCACATAACCTTA
1 ACCACATAACCTTA
21896682 ACCACATAACCTTA
1 ACCACATAACCTTA
21896696 AC
1 AC
21896698 TAACAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (14 bp):
ACCACATAACCTTA
Found at i:21897898 original size:26 final size:26
Alignment explanation
Indices: 21897869--21897918 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21897859 AATAATTCGG
21897869 GGAATCAGCACTTAGCAACCCCTTAA
1 GGAATCAGCACTTAGCAACCCCTTAA
* *
21897895 GGAATCTGCACTTAGCTACCCCTT
1 GGAATCAGCACTTAGCAACCCCTT
21897919 TTTGATCAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (26 bp):
GGAATCAGCACTTAGCAACCCCTTAA
Found at i:21897940 original size:41 final size:41
Alignment explanation
Indices: 21897895--21898041 Score: 240
Period size: 41 Copynumber: 3.6 Consensus size: 41
21897885 AACCCCTTAA
*
21897895 GGAATCTGCACTTAGCTACCCCTTTTTGATCAGAGTTTCGG
1 GGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTTTCGG
* *
21897936 GGAATTTGCACTTAGCAACCCCTTTTTGATCAGAGTTTTGG
1 GGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTTTCGG
* * *
21897977 GGAATCTGCACTTAGCTACCCCTTTTTGATCAGCGATTCGG
1 GGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTTTCGG
21898018 GGAATCTGCACTTAGCAACCCCTT
1 GGAATCTGCACTTAGCAACCCCTT
21898042 ACATTCAATG
Statistics
Matches: 97, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 97 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (41 bp):
GGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTTTCGG
Found at i:21902462 original size:3 final size:3
Alignment explanation
Indices: 21902454--21902479 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
21902444 TTGCTAGGAA
21902454 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
21902480 AAAATAGGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:21904909 original size:24 final size:25
Alignment explanation
Indices: 21904877--21904937 Score: 97
Period size: 24 Copynumber: 2.5 Consensus size: 25
21904867 ACAATTGCAA
* *
21904877 TTCAGATACATAATCAGATG-TAAT
1 TTCATATACATAATCAGATGCAAAT
21904901 TTCATATACATAATCAGATGCAAAT
1 TTCATATACATAATCAGATGCAAAT
21904926 TTCATATACATA
1 TTCATATACATA
21904938 TTCATATCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
24 19 0.56
25 15 0.44
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (25 bp):
TTCATATACATAATCAGATGCAAAT
Found at i:21906656 original size:14 final size:14
Alignment explanation
Indices: 21906637--21906666 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
21906627 CCATGATTCC
21906637 ACCACATAACCTTA
1 ACCACATAACCTTA
21906651 ACCACATAACCTTA
1 ACCACATAACCTTA
21906665 AC
1 AC
21906667 TAACAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (14 bp):
ACCACATAACCTTA
Found at i:21912349 original size:25 final size:24
Alignment explanation
Indices: 21912316--21912364 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
21912306 CATGGCACGA
*
21912316 TTTATAATAAATAATAACAATATATT
1 TTTATAATAAA-AATAA-AAAATATT
21912342 TTTA-AATAAAAATAAAAAATATT
1 TTTATAATAAAAATAAAAAATATT
21912365 AATGAAACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
24 5 0.23
25 6 0.27
26 4 0.18
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (24 bp):
TTTATAATAAAAATAAAAAATATT
Found at i:21920273 original size:13 final size:13
Alignment explanation
Indices: 21920255--21920285 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
21920245 CTTAAGTGTA
21920255 GTATATTCATTTT
1 GTATATTCATTTT
*
21920268 GTATATTCGTTTT
1 GTATATTCATTTT
21920281 GTATA
1 GTATA
21920286 CATGTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.13, T:0.58
Consensus pattern (13 bp):
GTATATTCATTTT
Found at i:21926388 original size:18 final size:18
Alignment explanation
Indices: 21926343--21926388 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
21926333 ATTTATGTCC
21926343 TATAAAAT-TAAATATAT
1 TATAAAATGTAAATATAT
21926360 TATATAAATGTAAATAT-T
1 TATA-AAATGTAAATATAT
21926378 TATAAATATGT
1 TATAAA-ATGT
21926389 TAAAATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.23
18 13 0.50
19 7 0.27
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (18 bp):
TATAAAATGTAAATATAT
Found at i:21926392 original size:19 final size:20
Alignment explanation
Indices: 21926350--21926392 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
21926340 TCCTATAAAA
21926350 TTAAATATATTATATAAATG
1 TTAAATATATTATATAAATG
21926370 -TAAATAT-TTATA-AATATG
1 TTAAATATATTATATAA-ATG
21926388 TTAAA
1 TTAAA
21926393 ATTATTTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.10
18 8 0.38
19 11 0.52
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
TTAAATATATTATATAAATG
Found at i:21926484 original size:20 final size:21
Alignment explanation
Indices: 21926438--21926484 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
21926428 ATGTAATAGT
*
21926438 AATAAAAAATATATAAATATA
1 AATAATAAATATATAAATATA
*
21926459 ACTAATAAATAT-TAAAT-TAA
1 AATAATAAATATATAAATAT-A
21926479 AATAAT
1 AATAAT
21926485 TATATTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 1 0.05
20 11 0.50
21 10 0.45
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
AATAATAAATATATAAATATA
Found at i:21928020 original size:14 final size:14
Alignment explanation
Indices: 21927989--21928021 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
21927979 CTAGACCGTG
21927989 TGTCACACACGGCC
1 TGTCACACACGGCC
21928003 --TCACACACGGCC
1 TGTCACACACGGCC
21928015 TGTCACA
1 TGTCACA
21928022 TAGCTGTGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 4
0.81 0.00 0.19
Matches are distributed among these distances:
12 12 0.71
14 5 0.29
ACGTcount: A:0.24, C:0.42, G:0.18, T:0.15
Consensus pattern (14 bp):
TGTCACACACGGCC
Found at i:21929808 original size:32 final size:32
Alignment explanation
Indices: 21929745--21929824 Score: 79
Period size: 32 Copynumber: 2.5 Consensus size: 32
21929735 TTTGGGCCCA
* * *
21929745 CATGCCCGTATGGCCCACACGGCCCATATTGC
1 CATGCCCGTGTGGCCCACACGACCCAAATTGC
** *
21929777 CATGCCCGTGTGGCCTGCACGACCGAAATTGC
1 CATGCCCGTGTGGCCCACACGACCCAAATTGC
* **
21929809 CTTGCTTGTGTGGCCC
1 CATGCCCGTGTGGCCC
21929825 CCCTATCCGA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.15, C:0.36, G:0.26, T:0.23
Consensus pattern (32 bp):
CATGCCCGTGTGGCCCACACGACCCAAATTGC
Found at i:21932284 original size:27 final size:27
Alignment explanation
Indices: 21932254--21932307 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
21932244 AGTTTTGGAA
21932254 AATCAAAATTTGTATTTTGATTCTTTC
1 AATCAAAATTTGTATTTTGATTCTTTC
21932281 AATCAAAATTTGTATTTTGATTCTTTC
1 AATCAAAATTTGTATTTTGATTCTTTC
21932308 CAGTTTCGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (27 bp):
AATCAAAATTTGTATTTTGATTCTTTC
Found at i:21935441 original size:21 final size:21
Alignment explanation
Indices: 21935407--21935447 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
21935397 GGGGGAAAGT
*
21935407 GGGAAGAAGTAAAAGTTTTGA
1 GGGAAGAAGTAAAAGGTTTGA
21935428 GGGAA-AAGTAAAAAGGTTTG
1 GGGAAGAAGT-AAAAGGTTTG
21935448 GGAGTTTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.44, C:0.00, G:0.34, T:0.22
Consensus pattern (21 bp):
GGGAAGAAGTAAAAGGTTTGA
Found at i:21942826 original size:44 final size:44
Alignment explanation
Indices: 21942765--21942851 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
21942755 GTTGAAATAA
* * *
21942765 AATAGAAATTGTAATAATTATACATTTAAAAGTAATTATAATTT
1 AATAGAAATTGTAATAATTACACATTTAAAAATAATTAGAATTT
* * *
21942809 AATAGAAGTTGTGATAATTGCACATTTAAAAATAATTAGAATT
1 AATAGAAATTGTAATAATTACACATTTAAAAATAATTAGAATT
21942852 AAAATTAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.48, C:0.03, G:0.10, T:0.38
Consensus pattern (44 bp):
AATAGAAATTGTAATAATTACACATTTAAAAATAATTAGAATTT
Found at i:21946192 original size:41 final size:41
Alignment explanation
Indices: 21946133--21946396 Score: 304
Period size: 41 Copynumber: 6.4 Consensus size: 41
21946123 GATTTTTTAA
*
21946133 ACCTTTAGCAGCGTTTTTATCTAAGCGCCGCTAATGCTTGG
1 ACCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTTGG
* *
21946174 ATCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATTCTCTGG
1 ACCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCT-TGG
*
21946216 -CCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGG
1 ACCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTTGG
* * * * *
21946256 ATCTTTAGCGGCATTTTTATCTGAGCGCCACTAATTCTCTGG
1 ACCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCT-TGG
* * * * *
21946298 -CCTTTAACGGTGTTTGTAGCTAAGCGCCGCTAATGCATT-T
1 ACCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGC-TTGG
* *
21946338 ACCTTTAGCGGCGTTTGTAGT-TAAGCGCCGCTAATGCATT-T
1 ACCTTTAGCGGCGTTTTTA-TCTAAGCGCCGCTAATGC-TTGG
21946379 ACCTTTAGCGGCGTTTTT
1 ACCTTTAGCGGCGTTTTT
21946397 GCCGAAGCGC
Statistics
Matches: 191, Mismatches: 26, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
40 2 0.01
41 183 0.96
42 6 0.03
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (41 bp):
ACCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTTGG
Found at i:21954050 original size:21 final size:21
Alignment explanation
Indices: 21954036--21954094 Score: 109
Period size: 21 Copynumber: 2.8 Consensus size: 21
21954026 CAGAAGCGGT
*
21954036 AGCGAGGGAAGCAGAGGCTGC
1 AGCGAGAGAAGCAGAGGCTGC
21954057 AGCGAGAGAAGCAGAGGCTGC
1 AGCGAGAGAAGCAGAGGCTGC
21954078 AGCGAGAGAAGCAGAGG
1 AGCGAGAGAAGCAGAGG
21954095 GTTNNNNNNN
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.34, C:0.17, G:0.46, T:0.03
Consensus pattern (21 bp):
AGCGAGAGAAGCAGAGGCTGC
Found at i:21954672 original size:85 final size:85
Alignment explanation
Indices: 21954583--21954790 Score: 251
Period size: 85 Copynumber: 2.4 Consensus size: 85
21954573 TTTGTAGATG
* * * * *
21954583 AAGCGCCGCTAAAGAACATTACTTTTATCGGCATTTTCTA-CCAAGCGCCGCTATAGAACATTA-
1 AAGCGCCGCTAAAGAACATGACTTTTAGCGGCATTTT-TACCCAAGCGCCACTAAAGAACATGAT
* *
21954646 CTTTTAGCGGCGTTTTTTTCCT
65 C-ATTAGCGGCATTTTTTTCCT
* * **
21954668 AAGCGCCACTAAAGAACATGA-TCTTTAGCAGCGGTTTTACCCAAGCGCCACTAAAGAACATGAT
1 AAGCGCCGCTAAAGAACATGACT-TTTAGCGGCATTTTTACCCAAGCGCCACTAAAGAACATGAT
21954732 CATTAGCGGCATTTTTTTCCT
65 CATTAGCGGCATTTTTTTCCT
* *
21954753 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCTTTTTT
1 AAGCGCCGCTAAAGAACATGACTTTTAGCGGCATTTTT
21954791 TCTGTAAGCG
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
84 3 0.03
85 99 0.96
86 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (85 bp):
AAGCGCCGCTAAAGAACATGACTTTTAGCGGCATTTTTACCCAAGCGCCACTAAAGAACATGATC
ATTAGCGGCATTTTTTTCCT
Found at i:21954686 original size:43 final size:43
Alignment explanation
Indices: 21954539--21954791 Score: 230
Period size: 43 Copynumber: 5.9 Consensus size: 43
21954529 GTTTGTGAAA
* * * **
21954539 TAAGAGCCGCTAAAGAACACT-ACTTTTAGCGGTG-TTTGTAGA
1 TAAGCGCCGCTAAAGAACA-TGACTTTTAGCGGCGTTTTTTACC
* * * *
21954581 TGAAGCGCCGCTAAAGAACATTACTTTTATCGGCATTTTCTACC
1 T-AAGCGCCGCTAAAGAACATGACTTTTAGCGGCGTTTTTTACC
* * *
21954625 -AAGCGCCGCTATAGAACATTACTTTTAGCGGCGTTTTTTTCC
1 TAAGCGCCGCTAAAGAACATGACTTTTAGCGGCGTTTTTTACC
* * *
21954667 TAAGCGCCACTAAAGAACATGA-TCTTTAGCAGCG-GTTTTACC
1 TAAGCGCCGCTAAAGAACATGACT-TTTAGCGGCGTTTTTTACC
* * * * *
21954709 CAAGCGCCACTAAAGAACATGA-TCATTAGCGGCATTTTTTTCC
1 TAAGCGCCGCTAAAGAACATGACT-TTTAGCGGCGTTTTTTACC
* *
21954752 TAAGCGCCGCTAAAGAACATGACCTTTAGCGGCTTTTTTT
1 TAAGCGCCGCTAAAGAACATGACTTTTAGCGGCGTTTTTT
21954792 CTGTAAGCGC
Statistics
Matches: 175, Mismatches: 29, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
42 76 0.43
43 94 0.54
44 5 0.03
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (43 bp):
TAAGCGCCGCTAAAGAACATGACTTTTAGCGGCGTTTTTTACC
Found at i:21954799 original size:43 final size:42
Alignment explanation
Indices: 21954583--21954801 Score: 224
Period size: 42 Copynumber: 5.1 Consensus size: 42
21954573 TTTGTAGATG
* * * * *
21954583 AAGCGCCGCTAAAGAACATTACTTTTATCGGCATTTTCTACC-
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGC-TTTTTTTCCT
* * *
21954625 AAGCGCCGCTATAGAACATTACTTTTAGCGGCGTTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGC-TTTTTTTCCT
* * * ** * *
21954668 AAGCGCCACTAAAGAACATGATCTTTAGCAGCGGTTTTACCC
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCTTTTTTTCCT
* * *
21954710 AAGCGCCACTAAAGAACATGATCATTAGCGGCATTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGC-TTTTTTTCCT
*
21954753 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCTTTTTTTCTGT
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCTTTTTTTC-CT
21954796 AAGCGC
1 AAGCGC
21954802 AGCAAAAGTT
Statistics
Matches: 149, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
42 81 0.54
43 68 0.46
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGACCTTTAGCGGCTTTTTTTCCT
Found at i:21961933 original size:404 final size:404
Alignment explanation
Indices: 21961184--21961994 Score: 1505
Period size: 404 Copynumber: 2.0 Consensus size: 404
21961174 TAACCTTTAA
21961184 AATCTCATTAAAGATCGGTAAGTATTCTTGTTTCCAATTAGAACCCATAAATTCTGTAATATTCG
1 AATCTCATTAAAGATCGGTAAGTATTCTTGTTTCCAATTAGAACCCATAAATTCTGTAATATTCG
* *
21961249 TTCTTATTAATCTTTCAACTCGAATACGAATCTTTTACGAAATTTCCCAAAGATCTTGATAATTT
66 TTCTTATTAATCTTTCAACTCGAATACGAATCTTTTACGAAATTCCCCAAAAATCTTGATAATTT
* *
21961314 TGATAGTTCTATTCACTTTTTTCCCATTTCTTTTCTTTAAATTTTTAGCAAACTAGAGTGACAGT
131 TGATAGTTCTATTCACTTTTTTCCCATTTCTTTGCTTTAAATTTTTAGCAAACTAGAATGACAGT
21961379 CACCTAAAAATAAGTTTAAAATAGAGTAGAAAAATAATAAAAGTGAGCAATAGCTCAAATGATTA
196 CACCTAAAAATAAGTTTAAAATAGAGTAGAAAAATAATAAAAGTGAGCAATAGCTCAAATGATTA
* *
21961444 AAGCCTTTACTTTTTCTCCCTTGCAAACCAGGTTCAAGTCACGCCAAACTCCCCATTTCCATTTT
261 AAGCATTTACTTTTTCTCCCTTGCAAACCAGGTTCAAGTCACGCCAAACTCCCCATCTCCATTTT
21961509 AATTTCGACCAAAATTGGATATCTTGCCATGCAACCCCTTGAAATTTGAAAACCCTAAGTATTTA
326 AATTTCGACCAAAATTGGATATCTTGCCATGCAACCCCTTGAAATTTGAAAACCCTAAGTATTTA
21961574 ATCCTCCTTTTCCT
391 ATCCTCCTTTTCCT
21961588 AATCTCATTAAAGATCGGTAAGTATTCTTGTTTCCAATTAGAACCCATAAATTCTGTAATATTCG
1 AATCTCATTAAAGATCGGTAAGTATTCTTGTTTCCAATTAGAACCCATAAATTCTGTAATATTCG
21961653 TTCTTATTAATCTTTCAACTCGAATACGAATCTTTTACGAAATTCCCCAAAAATCTTGATAATTT
66 TTCTTATTAATCTTTCAACTCGAATACGAATCTTTTACGAAATTCCCCAAAAATCTTGATAATTT
*
21961718 TGATAGTTCTATTCACTTTTTTCCCATTTCTTTGCTTTAAATTTTTAGCAAACTAGAATGAGAGT
131 TGATAGTTCTATTCACTTTTTTCCCATTTCTTTGCTTTAAATTTTTAGCAAACTAGAATGACAGT
* *
21961783 CACCTAAAAATAAGTTTTAAATAGAGTAGAAAATTAATAAAAGTGAGCAATAGCTCAAATGATTA
196 CACCTAAAAATAAGTTTAAAATAGAGTAGAAAAATAATAAAAGTGAGCAATAGCTCAAATGATTA
* *
21961848 AAGCATTTACTTTTTCTCCCTTGCAAACTAGGTTCAAGTCTCGCCAAACTCCCCATCTCCATTTT
261 AAGCATTTACTTTTTCTCCCTTGCAAACCAGGTTCAAGTCACGCCAAACTCCCCATCTCCATTTT
* *
21961913 AATTTCGACCAAAATTGGATATTTTTCCATGCAACCCCTTGAAATTTGAAAACCCTAAGTATTTA
326 AATTTCGACCAAAATTGGATATCTTGCCATGCAACCCCTTGAAATTTGAAAACCCTAAGTATTTA
21961978 ATCCTCCTTTTCCT
391 ATCCTCCTTTTCCT
21961992 AAT
1 AAT
21961995 TACTCTAGGA
Statistics
Matches: 394, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
404 394 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.36
Consensus pattern (404 bp):
AATCTCATTAAAGATCGGTAAGTATTCTTGTTTCCAATTAGAACCCATAAATTCTGTAATATTCG
TTCTTATTAATCTTTCAACTCGAATACGAATCTTTTACGAAATTCCCCAAAAATCTTGATAATTT
TGATAGTTCTATTCACTTTTTTCCCATTTCTTTGCTTTAAATTTTTAGCAAACTAGAATGACAGT
CACCTAAAAATAAGTTTAAAATAGAGTAGAAAAATAATAAAAGTGAGCAATAGCTCAAATGATTA
AAGCATTTACTTTTTCTCCCTTGCAAACCAGGTTCAAGTCACGCCAAACTCCCCATCTCCATTTT
AATTTCGACCAAAATTGGATATCTTGCCATGCAACCCCTTGAAATTTGAAAACCCTAAGTATTTA
ATCCTCCTTTTCCT
Found at i:21963925 original size:24 final size:25
Alignment explanation
Indices: 21963759--21963969 Score: 105
Period size: 24 Copynumber: 8.6 Consensus size: 25
21963749 TAGCCCTCTC
*
21963759 GAGCTTCCCGTTATATGGCTCTTCGT
1 GAGCTTCCCGTTAT-TGGCTCTTCAT
** * **
21963785 GAGCTTCCCGATTAAAGGCTTTTTGT
1 GAGCTTCCCG-TTATTGGCTCTTCAT
* * **
21963811 GAGCTTCCTGATTAATGGCTC-TCCG
1 GAGCTTCCCG-TTATTGGCTCTTCAT
* * * *
21963836 GAGATTCCCGATA-TGGCTC-GCTT
1 GAGCTTCCCGTTATTGGCTCTTCAT
* * * *
21963859 GAACTTCCCGATATATGGCTATCCA-
1 GAGCTTCCCGTTAT-TGGCTCTTCAT
** *
21963884 GAGCTTCCTATTAATGGCTCTTCA-
1 GAGCTTCCCGTTATTGGCTCTTCAT
* **
21963908 GAGCTACCCGTTATTGGCT-AGCAT
1 GAGCTTCCCGTTATTGGCTCTTCAT
21963932 GAGCTTCCCGATTA-TGGCTCTT-AT
1 GAGCTTCCCG-TTATTGGCTCTTCAT
21963956 GAGCTTCCCGTTAT
1 GAGCTTCCCGTTAT
21963970 ACAGTCCGGA
Statistics
Matches: 140, Mismatches: 37, Indels: 18
0.72 0.19 0.09
Matches are distributed among these distances:
23 23 0.16
24 51 0.36
25 26 0.19
26 37 0.26
27 3 0.02
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (25 bp):
GAGCTTCCCGTTATTGGCTCTTCAT
Found at i:21963960 original size:72 final size:72
Alignment explanation
Indices: 21963784--21963963 Score: 184
Period size: 72 Copynumber: 2.5 Consensus size: 72
21963774 TGGCTCTTCG
* * * * *
21963784 TGAGCTTCCCGATTAAAGGCTTTTTGTGAGCTTCCTGATTAATGGCTCTCCGGAGATTCCCGATA
1 TGAGCTTCCCGATT-ATGGC-TATTATGAGCTTCCTGATTAATGGCTCTCCAGAGATACCCGATA
* *
21963849 TGGCTCGCT
64 TGGCTAGCA
* * * * *
21963858 TGAACTTCCCGATATATGGCTATCCA-GAGCTTCCT-ATTAATGGCTCTTCAGAGCTACCCGTTA
1 TGAGCTTCCCGAT-TATGGCTAT-TATGAGCTTCCTGATTAATGGCTCTCCAGAGATACCCGATA
21963921 TTGGCTAGCA
64 -TGGCTAGCA
*
21963931 TGAGCTTCCCGATTATGGCTCTTATGAGCTTCC
1 TGAGCTTCCCGATTATGGCTATTATGAGCTTCC
21963964 CGTTATACAG
Statistics
Matches: 87, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
71 1 0.01
72 39 0.45
73 30 0.34
74 16 0.18
75 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (72 bp):
TGAGCTTCCCGATTATGGCTATTATGAGCTTCCTGATTAATGGCTCTCCAGAGATACCCGATATG
GCTAGCA
Found at i:21965586 original size:28 final size:28
Alignment explanation
Indices: 21965547--21965687 Score: 142
Period size: 28 Copynumber: 5.0 Consensus size: 28
21965537 GACCGTGTGT
*
21965547 CCCCTATGTTTT-AAATATTACAATTTTA
1 CCCCTAT-TTTTCAAATATTATAATTTTA
*
21965575 TCCCCTATTTTTCATATATTATAATTTTA
1 -CCCCTATTTTTCAAATATTATAATTTTA
*
21965604 CCCTTATTTTTCAAA-ATTTATAATTTTA
1 CCCCTATTTTTCAAATA-TTATAATTTTA
* * * *
21965632 CCCATATTTTTTTAGATTTTATAATTTTA
1 CCCCTA-TTTTTCAAATATTATAATTTTA
* * *
21965661 CCCCTATTTTTCATATTTTATAGTTTT
1 CCCCTATTTTTCAAATATTATAATTTT
21965688 GTTCCTTATT
Statistics
Matches: 96, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
27 1 0.01
28 51 0.53
29 44 0.46
ACGTcount: A:0.28, C:0.16, G:0.02, T:0.55
Consensus pattern (28 bp):
CCCCTATTTTTCAAATATTATAATTTTA
Found at i:21965643 original size:57 final size:57
Alignment explanation
Indices: 21965547--21965687 Score: 153
Period size: 57 Copynumber: 2.5 Consensus size: 57
21965537 GACCGTGTGT
* * *
21965547 CCCCTATGTTTT--AAATATTACAATTTTATCCCCTATTTTTCATATATTATAATTTTA
1 CCCCTAT-TTTTCAAAAT-TTATAATTTTATCCCATATTTTTCAGATATTATAATTTTA
* * *
21965604 CCCTTATTTTTCAAAATTTATAATTTTA-CCCATATTTTTTTAGATTTTATAATTTTA
1 CCCCTATTTTTCAAAATTTATAATTTTATCCCATA-TTTTTCAGATATTATAATTTTA
* * *
21965661 CCCCTATTTTTCATATTTTATAGTTTT
1 CCCCTATTTTTCAAAATTTATAATTTT
21965688 GTTCCTTATT
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
56 9 0.13
57 58 0.82
58 4 0.06
ACGTcount: A:0.28, C:0.16, G:0.02, T:0.55
Consensus pattern (57 bp):
CCCCTATTTTTCAAAATTTATAATTTTATCCCATATTTTTCAGATATTATAATTTTA
Found at i:21965697 original size:29 final size:31
Alignment explanation
Indices: 21965675--21965747 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
21965665 TATTTTTCAT
21965675 ATTTTATAGTTTTGT-TCCTTATTTTTAAAAA
1 ATTTTATAGTTTTGTCTCCTTATTTTT-AAAA
* *
21965706 ATTTTATAGTTTTGTCTCC-TA-CTTTATAA
1 ATTTTATAGTTTTGTCTCCTTATTTTTAAAA
*
21965735 ATTTTACAGTTTT
1 ATTTTATAGTTTT
21965748 AACCAAAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 15 0.39
30 3 0.08
31 17 0.45
32 3 0.08
ACGTcount: A:0.26, C:0.10, G:0.07, T:0.58
Consensus pattern (31 bp):
ATTTTATAGTTTTGTCTCCTTATTTTTAAAA
Found at i:21968920 original size:23 final size:24
Alignment explanation
Indices: 21968889--21968938 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
21968879 TTTAGCGCAC
21968889 TCTCTATTACGCACTTCAATGTTG
1 TCTCTATTACGCACTTCAATGTTG
* *
21968913 TCTC-ATTACGCACTTTAATTTTG
1 TCTCTATTACGCACTTCAATGTTG
21968936 TCT
1 TCT
21968939 TGTACTGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.20, C:0.24, G:0.10, T:0.46
Consensus pattern (24 bp):
TCTCTATTACGCACTTCAATGTTG
Found at i:21974756 original size:29 final size:29
Alignment explanation
Indices: 21974714--21974775 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
21974704 CTTTCAGTGC
*
21974714 ATTTTTTACGGGTGGTTGAGGTTGATCAG
1 ATTTTTTACGGGTGGTTGAGGTTGATCAA
*
21974743 ATTTTTTATGGGTGGTTGAGGTTGATCAA
1 ATTTTTTACGGGTGGTTGAGGTTGATCAA
21974772 ATTT
1 ATTT
21974776 CTGGAAATGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.19, C:0.05, G:0.31, T:0.45
Consensus pattern (29 bp):
ATTTTTTACGGGTGGTTGAGGTTGATCAA
Found at i:21976177 original size:30 final size:30
Alignment explanation
Indices: 21976143--21976205 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
21976133 ACATAACATA
*
21976143 AATTATGTAAGGACATAAACAAAATAAGAT
1 AATTATGTAAGAACATAAACAAAATAAGAT
21976173 AATTATGTAAGAACATAAACAAAATAAGAT
1 AATTATGTAAGAACATAAACAAAATAAGAT
21976203 AAT
1 AAT
21976206 CAAAGGTCCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.59, C:0.06, G:0.11, T:0.24
Consensus pattern (30 bp):
AATTATGTAAGAACATAAACAAAATAAGAT
Found at i:21980045 original size:43 final size:43
Alignment explanation
Indices: 21979987--21980660 Score: 406
Period size: 43 Copynumber: 15.5 Consensus size: 43
21979977 CTTCAACCTA
* *
21979987 CTCCACTGCTGCTTAGGGAGATAGGACTTGTGGTTTAAATCTG
1 CTCCACTACTGCTTAGGGAGATAGGACTTGTGGTTTAGATCTG
* * * ** * *
21980030 CTTCACTACTGCTTAGGAAGATAAGA-TTCGCCGTCCTCGATCTG
1 CTCCACTACTGCTTAGGGAGATAGGACTT-GTGGT-TTAGATCTG
* * * * * *
21980074 CTCTACTACTGCTTAGGGAGATAGAACTGGTGGCTTAAATCTA
1 CTCCACTACTGCTTAGGGAGATAGGACTTGTGGTTTAGATCTG
* * ** *
21980117 CTTCACTACTGCTTAGGAAGAT-GAGA-TTCGCCGTCTTCGATCTG
1 CTCCACTACTGCTTAGGGAGATAG-GACTT-GTGGT-TTAGATCTG
**** * *
21980161 CTCCACTACTGCTTAGGGAGATAGGA-TCTAACATCTTCGACCTG
1 CTCCACTACTGCTTAGGGAGATAGGACT-TGTGGT-TTAGATCTG
* * * *
21980205 CTCCAGTATTGCTTAGGGAGATAGGA-TTGGTGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGATAGGACTT-GTGGTTTAGATCTG
* * * *
21980248 C-CTCACTACTGCTTAGGAAGATAAGA-TTCGTTGTATTCGATCTG
1 CTC-CACTACTGCTTAGGGAGATAGGACTT-GTGGT-TTAGATCTG
** * *
21980292 CTCCACTACTGCTTAGGGAGATAGGATCTAACAT-CTTT-GACCTG
1 CTCCACTACTGCTTAGGGAGATAGGA-CT--TGTGGTTTAGATCTG
* * *
21980336 CTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGATAGGACTTGTGGTTTAGATCTG
** * *
21980379 CTCCACTACTGCTTAGGGAGATAGGATCTAACAT-CTTT-GACCTG
1 CTCCACTACTGCTTAGGGAGATAGGA-CT--TGTGGTTTAGATCTG
* ***** * *
21980423 CTCCACTACTACTTAGGGAGATAGGACTAACATTTTTGACCTG
1 CTCCACTACTGCTTAGGGAGATAGGACTTGTGGTTTAGATCTG
* * * *
21980466 CTCCACTACTGTTTAGGGAGATAGGACTGGTGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGATAGGACTTGTGGTTTAGATCTG
* ** * *
21980509 CTCCACTACTGCTTAGGGAGATAGAATCTAACAT-CTTT-GACCTG
1 CTCCACTACTGCTTAGGGAGATAGGA-CT--TGTGGTTTAGATCTG
** * *
21980553 CTCCACTACTGCTTAGGGAGATAGGACTAACAT-CTTT-GACCTG
1 CTCCACTACTGCTTAGGGAGATAGGACT--TGTGGTTTAGATCTG
* * *
21980596 CTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGATAGGACTTGTGGTTTAGATCTG
* *
21980639 CTTCACTACTGCTTAGGAAGAT
1 CTCCACTACTGCTTAGGGAGAT
21980661 GAGATTCGCC
Statistics
Matches: 495, Mismatches: 108, Indels: 56
0.75 0.16 0.08
Matches are distributed among these distances:
41 3 0.01
42 12 0.02
43 249 0.50
44 216 0.44
45 10 0.02
46 4 0.01
47 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (43 bp):
CTCCACTACTGCTTAGGGAGATAGGACTTGTGGTTTAGATCTG
Found at i:21980052 original size:87 final size:86
Alignment explanation
Indices: 21979938--21980660 Score: 496
Period size: 87 Copynumber: 8.3 Consensus size: 86
21979928 ACTGGATGCG
* * ** * * * *
21979938 ATCTGCTCTACTATTGCTTAAAGAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTA-AATCTTCGACCTGCTCCACTACTGCTTAG
21980003 GGAGATAGGACTTGTGGTTTAA
65 GGAGATAGGACTTGTGGTTTAA
* * * **** * * *
21980025 ATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCCTCGATCTGCTCTACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGA-TCTAAATCTTCGACCTGCTCCACTACTGCTTAG
* * *
21980090 GGAGATAGAACTGGTGGCTTAA
65 GGAGATAGGACTTGTGGTTTAA
* * * **** *
21980112 ATCTACTTCACTACTGCTTAGGAAGAT-GAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAG-GA-TCTAAATCTTCGACCTGCTCCACTACTGCTTA
**** **
21980176 GGGAGATAGGA-TCTAACATCTTCG
64 GGGAGATAGGACT-TGTGGT-TTAA
* * * ** ** *
21980200 ACCTGCTCCAGTATTGCTTAGGGAGATAGGAT-T-GGTGGCTTAAATCTGC-CTCACTACTGCTT
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAAAT--CTTCGACCTGCTC-CACTACTGCTT
* * * **
21980262 AGGAAGATAAGA-TTCGTTGTATTCG
63 AGGGAGATAGGACTT-GTGGT-TTAA
*
21980287 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGACCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAA-ATCTTCGACCTGCTCCACTACTGCTTAG
* *
21980352 GGAGATAGGACTAGTGGCTTAA
65 GGAGATAGGACTTGTGGTTTAA
* *
21980374 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGACCTGCTCCACTACTACTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAA-ATCTTCGACCTGCTCCACTACTGCTTAG
***** **
21980439 GGAGATAGGACTAACATTTTTG
65 GGAGATAGGACTTGTGGTTTAA
* * ** ** *
21980461 ACCTGCTCCACTACTGTTTAGGGAGATAGGA-CT-GGTGGCTTAAATCTGCTCCACTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAAAT--CTTCGACCTGCTCCACTACTGCTTA
* ** * *
21980524 GGGAGATAGAATCTAACAT-CTTT-G
64 GGGAGATAGGA-CT--TGTGGTTTAA
* *
21980548 ACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTAACATCTTTGACCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAA-ATCTTCGACCTGCTCCACTACTGCTTAG
* *
21980612 GGAGATAGGACTGGTGGCTTAA
65 GGAGATAGGACTTGTGGTTTAA
* *
21980634 ATCTGCTTCACTACTGCTTAGGAAGAT
1 ATCTGCTCCACTACTGCTTAGGGAGAT
21980661 GAGATTCGCC
Statistics
Matches: 514, Mismatches: 99, Indels: 47
0.78 0.15 0.07
Matches are distributed among these distances:
84 2 0.00
85 4 0.01
86 62 0.12
87 377 0.73
88 63 0.12
89 5 0.01
90 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (86 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAAATCTTCGACCTGCTCCACTACTGCTTAGG
GAGATAGGACTTGTGGTTTAA
Found at i:21980170 original size:131 final size:129
Alignment explanation
Indices: 21980025--21980728 Score: 851
Period size: 131 Copynumber: 5.4 Consensus size: 129
21980015 TGTGGTTTAA
* * * ** * * * * *
21980025 ATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCCTCGATCTGCTCTACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGA-TCAACATCTTTGACCTGCTCCACTACTGCTTAG
* * *
21980090 GGAGATAGAACTGGTGGCTTAAATCTACTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTC
65 GGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGAT-AGATTCGACGTCTTC
21980155 G
129 G
* * *
21980156 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCGACCTGCTCCAGTATTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATC-AACATCTTTGACCTGCTCCACTACTGCTTAG
* * ** *
21980221 GGAGATAGGATTGGTGGCTTAAATCTGCCTCACTACTGCTTAGGAAGATAAGATTCGTTGTATTC
65 GGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGAT-AGATTCGACGTCTTC
21980286 G
129 G
21980287 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGACCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATC-AACATCTTTGACCTGCTCCACTACTGCTTAG
* * * * *
21980352 GGAGATAGGACTAGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGATAGGA-TCTAACATCTT
65 GGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATA-GATTC-GACGTCTT
*
21980416 TG
128 CG
* * * *
21980418 ACCTGCTCCACTACTACTTAGGGAGATAGGA-CTAACATTTTTGACCTGCTCCACTACTGTTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATC-AACATCTTTGACCTGCTCCACTACTGCTTAG
* * * * * *
21980482 GGAGATAGGACTGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGATAGAATCTAACATCTTT
65 GGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAGATTC-GACGTCTTC
21980547 G
129 G
*
21980548 ACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTAACATCTTTGACCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATC-AACATCTTTGACCTGCTCCACTACTGCTTAG
*
21980612 GGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTC
65 GGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGAT-AGATTCGACGTCTTC
21980677 G
129 G
* * * * * *
21980678 ATCTGTTTC-CTTCTTG-TTTGGGAGGTAGGATCTAACATCTTCGACCTGCTC
1 ATCTGCTCCACTAC-TGCTTAGGGAGATAGGATC-AACATCTTTGACCTGCTC
21980729 NNNNNNNNNN
Statistics
Matches: 511, Mismatches: 55, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
129 17 0.03
130 239 0.47
131 255 0.50
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (129 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAGGATCAACATCTTTGACCTGCTCCACTACTGCTTAGG
GAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAGATTCGACGTCTTCG
Found at i:21980314 original size:218 final size:218
Alignment explanation
Indices: 21979936--21980621 Score: 670
Period size: 218 Copynumber: 3.2 Consensus size: 218
21979926 AGACTGGATG
* * ** * * * *
21979936 CGATCTGCTCTACTATTGCTTAAAGAGATAAGATCT-ACAATCTTCAACCTACTCCACTGCTGCT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAAC-ATCTTCGACCTGCTCCACTACTGCT
* * *
21980000 TAGGGAGATAGGACTTGTGGTTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTC
65 TAGGGAGATAGGACTTGTGGCTTAAATCTGCCTCACTACTGCTTAGGAAGATAAGATTCGCCGTA
* **** * *
21980065 CTCGATCTGCTCTACTACTGCTTAGGGAGATA-GAACTGGTGGCTTAAATCTACTTCACTACTGC
130 CTCGATCTGCTCCACTACTGCTTAGGGAGATAGGAACTAACAGCTTAAACCTACTCCACTACTGC
* * *
21980129 TTAGGAAGAT-GAGATTCGCCGTCTT
195 TTAGGAAGATAG-GACTAG-CGGCTT
* *
21980154 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCGACCTGCTCCAGTATTGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCGACCTGCTCCACTACTGCTT
**
21980219 AGGGAGATAGGA-TTGGTGGCTTAAATCTGCCTCACTACTGCTTAGGAAGATAAGATTCGTTGTA
66 AGGGAGATAGGACTT-GTGGCTTAAATCTGCCTCACTACTGCTTAGGAAGATAAGATTCGCCGTA
* * * ** *
21980283 TTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGACCTGCTCCACTACTGC
130 CTCGATCTGCTCCACTACTGCTTAGGGAGATAGGAACTAACAGCTTAAACCTACTCCACTACTGC
* *
21980348 TTAGGGAGATAGGACTAGTGGCTT
195 TTAGGAAGATAGGACTAGCGGCTT
** * *
21980372 AAATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGACCTGCTCCACTACTACTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCGACCTGCTCCACTACTGCTT
****** ** * * * * *
21980437 AGGGAGATAGGACTAACATTTTTGACCTG-CTCCACTACTGTTTAGGGAGATAGGACT-G--GTG
66 AGGGAGATAGGACTTGTGGCTTAAATCTGCCT-CACTACTGCTTAGGAAGATAAGATTCGCCGT-
* ** * ** *
21980498 GCTTAAATCTGCTCCACTACTGCTTAGGGAGATA-GAATCTAACATCTTTGACCTGCTCCACTAC
129 AC-TCGATCTGCTCCACTACTGCTTAGGGAGATAGGAA-CTAACAGCTTAAACCTACTCCACTAC
* * **
21980562 TGCTTAGGGAGATAGGACTAACATCTT
192 TGCTTAGGAAGATAGGACTAGCGGCTT
* *
21980589 TGACCTGCTCCACTACTGCTTAGGGAGATAGGA
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGA
21980622 CTGGTGGCTT
Statistics
Matches: 395, Mismatches: 64, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
215 2 0.01
216 2 0.01
217 113 0.29
218 240 0.61
219 37 0.09
220 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (218 bp):
CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCGACCTGCTCCACTACTGCTT
AGGGAGATAGGACTTGTGGCTTAAATCTGCCTCACTACTGCTTAGGAAGATAAGATTCGCCGTAC
TCGATCTGCTCCACTACTGCTTAGGGAGATAGGAACTAACAGCTTAAACCTACTCCACTACTGCT
TAGGAAGATAGGACTAGCGGCTT
Found at i:21980713 original size:130 final size:130
Alignment explanation
Indices: 21980071--21980728 Score: 894
Period size: 130 Copynumber: 5.0 Consensus size: 130
21980061 CGTCCTCGAT
* * *
21980071 CTGCTCTACTACTGCTTAGGGAGATAGAACTGGTGGCTTAAATCTACTTCACTACTGCTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* *
21980136 GATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCGA
66 GAT-AGATTCGACGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
21980201 C
130 C
* * * *
21980202 CTGCTCCAGTATTGCTTAGGGAGATAGGATTGGTGGCTTAAATCTGCCTCACTACTGCTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
** *
21980267 GATAAGATTCGTTGTATTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
66 GAT-AGATTCGACGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
21980332 C
130 C
* * *
21980333 CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTCCACTACTGCTTAGGGA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * * * * *
21980398 GATAGGA-TCTAACATCTTTGACCTGCTCCACTACTACTTAGGGAGATAGGA-CTAACATTTTTG
66 GATA-GATTC-GACGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTG
21980461 AC
129 AC
* * *
21980463 CTGCTCCACTACTGTTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * * * *
21980528 GATAGAATCTAACATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTAACATCTTTGA
66 GATAGATTC-GACGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
21980592 C
130 C
21980593 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * * * * * *
21980658 GATGAGATTCGCCGTCTTCGATCTGTTTC-CTTCTTG-TTTGGGAGGTAGGATCTAACATCTTCG
66 GAT-AGATTCGACGTCTTCGATCTGCTCCACTAC-TGCTTAGGGAGATAGGATCTAACATCTTTG
21980721 AC
129 AC
21980723 CTGCTC
1 CTGCTC
21980729 NNNNNNNNNN
Statistics
Matches: 474, Mismatches: 47, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
129 17 0.04
130 237 0.50
131 220 0.46
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (130 bp):
CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
GATAGATTCGACGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGAC
Found at i:21980961 original size:44 final size:44
Alignment explanation
Indices: 21980854--21981709 Score: 715
Period size: 44 Copynumber: 19.7 Consensus size: 44
21980844 GGTGGCTTAA
* * * *
21980854 ATCTGCTTCACTACTGCTTAGGAAGATGAGAT-TCGCCGTCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACCGTCTTCG
* * *
21980898 ATCT-CTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* * * *
21980941 ACCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* * *** * **
21980985 ACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* * *
21981028 ATCTGCTTCACTACTGCTTAGGAAGATAAGAT-TCGCCGTCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACCGTCTTCG
* * * *
21981072 ATTTGCTCCACTACTGCTTAGGGAGATAAGATATACCATCTTTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* * * * * *
21981116 ACCAGCTCCTCTACTGCTTAGGGAGATATGATCTACCATCTTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* * *
21981160 ACCTGCTCCACTACTGCTTAGGGAGATATGATCTACCATCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* * *** * **
21981204 ACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* * * *
21981247 ATCTGCTTCACTACTGCTTAGGAAGATATGAT-TCGCCGTCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACCGTCTTCG
* * *
21981291 ATTTGCTCCACTACTGCTTAGGGAGATAAAATCTACCATCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* *** * **
21981335 A-CATGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAA
1 ATC-TGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
** * * *
21981378 ATCTTATTCACTACTGCTTAGGAAGATAAGAT-TCGCCGTCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACCGTCTTCG
* * *
21981422 ATTTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* * *** * **
21981466 ACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* *
21981509 ATCTGCTTCACTACTGCTTAGGAAGATAAGAT-TCACCGTCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACCGTCTTCG
* ****
21981553 ATCTGCTTCACTACTGCTTAGGGAGATAAGAT-TGGTTTCTTCTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTC-G
* * *
21981597 -TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT--TG-GTGCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
*** *
21981636 ATCTGCTCCACTACTGCTTAGGGAGATAAGATC-AGTTTCTTTTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTC-TTCG
*
21981680 -TCTGTTCCACTACTGCTTAGGGAGATAAGA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGA
21981710 CTTGTAATCT
Statistics
Matches: 662, Mismatches: 127, Indels: 47
0.79 0.15 0.06
Matches are distributed among these distances:
39 1 0.00
40 32 0.05
41 2 0.00
42 1 0.00
43 226 0.34
44 397 0.60
45 3 0.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
Found at i:21981034 original size:87 final size:87
Alignment explanation
Indices: 21980854--21981711 Score: 727
Period size: 87 Copynumber: 9.9 Consensus size: 87
21980844 GGTGGCTTAA
* * *
21980854 ATCTGCTTCACTACTGCTTAGGAAGATGAGAT-TCGCCGTCTTCGATCT-CTCCACTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-GCCGTCTTCGATCTGCTCCACTACTGCTTA
* * *
21980917 GGGAGATAGGATCTAACATCTTCG
65 GGGAGATAAGA-CTACCGTCTTCG
* * ** * *
21980941 ACCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCGACCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
* *** * **
21981006 GGAGATAGGACTGGTGGCTTAA
66 GGAGATAAGACTACCGTCTTCG
* * *
21981028 ATCTGCTTCACTACTGCTTAGGAAGATAAGAT-TCGCCGTCTTCGATTTGCTCCACTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-GCCGTCTTCGATCTGCTCCACTACTGCTTA
* * *
21981092 GGGAGATAAGATATACCATCTTTG
65 GGGAGATAAGA-CTACCGTCTTCG
* * * * * * * *
21981116 ACCAGCTCCTCTACTGCTTAGGGAGATATGATCTACCATCTTCAACCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
* *
21981181 GGAGATATGATCTACCATCTTCG
66 GGAGATAAGA-CTACCGTCTTCG
* * ** * ** *
21981204 ACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
* * * *
21981268 GAAGATATGATTCGCCGTCTTCG
66 GGAGATAAGACT-ACCGTCTTCG
* * * *
21981291 ATTTGCTCCACTACTGCTTAGGGAGATAAAATCTACCATCTTCGA-CATGCTCCACTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCCGTCTTCGATC-TGCTCCACTACTGCTTA
* *** * **
21981355 GGGAGATAGGACTGGTGGCTTAA
65 GGGAGATAAGACTACCGTCTTCG
** * * *
21981378 ATCTTATTCACTACTGCTTAGGAAGATAAGAT-TCGCCGTCTTCGATTTGCTCCACTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-GCCGTCTTCGATCTGCTCCACTACTGCTTA
* *
21981442 GGGAGATAAGATCTACCATCTTTG
65 GGGAGATAAGA-CTACCGTCTTCG
* * ** * ** *
21981466 ACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
* *
21981530 GAAGATAAGATTCACCGTCTTCG
66 GGAGATAAGACT-ACCGTCTTCG
* ***
21981553 ATCTGCTTCACTACTGCTTAGGGAGATAAGAT-TGGTTTCTTCTG-TCTGCTCCACTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCCGTCTTC-GATCTGCTCCACTACTGCTTA
* * *
21981616 GGGAGATAAGACT--TG-GTGCG
65 GGGAGATAAGACTACCGTCTTCG
* ** * *
21981636 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCAG-TTTCTTTTG-TCTGTTCCACTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCCGTC-TTCGATCTGCTCCACTACTGCTTA
21981699 GGGAGATAAGACT
65 GGGAGATAAGACT
21981712 TGTAATCTTC
Statistics
Matches: 620, Mismatches: 134, Indels: 38
0.78 0.17 0.05
Matches are distributed among these distances:
83 70 0.11
84 4 0.01
86 4 0.01
87 347 0.56
88 194 0.31
89 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (87 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
GGAGATAAGACTACCGTCTTCG
Found at i:21981166 original size:219 final size:219
Alignment explanation
Indices: 21980902--21981365 Score: 822
Period size: 219 Copynumber: 2.1 Consensus size: 219
21980892 TCTTCGATCT
*
21980902 CTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCGACCTGCTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCAACCTGCTCCACTACTGCTTAGGGAGA
21980967 TAGGATCTAACATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCT
66 TAGGATCTAACATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCT
21981032 GCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATTTGCTCCACTACTGCTTAGGGAG
131 GCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATTTGCTCCACTACTGCTTAGGGAG
* *
21981097 ATAAGATATACCATCTTTGACCA-G
196 ATAAAATATACCATCTTCGA-CATG
* * *
21981121 CTCCTCTACTGCTTAGGGAGATATGATCTACCATCTTCAACCTGCTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCAACCTGCTCCACTACTGCTTAGGGAGA
* *
21981186 TATGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCT
66 TAGGATCTAACATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCT
*
21981251 GCTTCACTACTGCTTAGGAAGATATGATTCGCCGTCTTCGATTTGCTCCACTACTGCTTAGGGAG
131 GCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATTTGCTCCACTACTGCTTAGGGAG
*
21981316 ATAAAATCTACCATCTTCGACATG
196 ATAAAATATACCATCTTCGACATG
21981340 CTCCACTACTGCTTAGGGAGATAGGA
1 CTCCACTACTGCTTAGGGAGATAGGA
21981366 CTGGTGGCTT
Statistics
Matches: 232, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
218 2 0.01
219 230 0.99
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (219 bp):
CTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTCAACCTGCTCCACTACTGCTTAGGGAGA
TAGGATCTAACATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCT
GCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATTTGCTCCACTACTGCTTAGGGAG
ATAAAATATACCATCTTCGACATG
Found at i:21981633 original size:131 final size:131
Alignment explanation
Indices: 21980843--21981709 Score: 950
Period size: 131 Copynumber: 6.7 Consensus size: 131
21980833 NNNNNNNNNN
*
21980843 TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGATCT-CTCCA
1 TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCA
* *
21980907 CTACTGCTTAGGGAGATAGGATCTAACATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGA
66 CTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGA
21980972 TC
131 -C
***** ** * * * * * ** * ** *
21980974 TAACATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACT-GGTGGCTTAAATCTGCTTCA
1 TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCA
* * * ** *
21981038 CTACTGCTTAGGAAGATAAGAT-TCGCCGTCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAG
66 CTACTGCTTAGGGAGATAAGATCT-ACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGG
*
21981102 ATA
130 A-C
***** ** * * * * * * * * * *
21981105 TACCATCTTTGACCAGCTCCTCTACTGCTTAGGGAGATATGA-TCTACCATCTTCAACCTGCTCC
1 TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTC-GCCGTCTTCGATCTGCTCC
*
21981169 ACTACTGCTTAGGGAGATATGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGG
65 ACTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGG
21981234 AC
130 AC
* *
21981236 TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATATGATTCGCCGTCTTCGATTTGCTCCA
1 TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCA
* *
21981301 CTACTGCTTAGGGAGATAAAATCTACCATCTTCGACATGCTCCACTACTGCTTAGGGAGATAGGA
66 CTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGA
21981366 C
131 C
** *
21981367 TGGTGGCTTAAATCTTATTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATTTGCTCCA
1 TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCA
*
21981432 CTACTGCTTAGGGAGATAAGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGA
66 CTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGA
21981497 C
131 C
* *
21981498 TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCACCGTCTTCGATCTGCTTCA
1 TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCA
**** * *
21981563 CTACTGCTTAGGGAGATAAGAT-TGGTTTCTTCTG-TCTGCTCCACTACTGCTTAGGGAGATAAG
66 CTACTGCTTAGGGAGATAAGATCTACCATCTTC-GACCTGCTCCACTACTGCTTAGGGAGATAGG
21981626 AC
130 AC
* * * ** * *
21981628 TTGGT-GC---GATCTGCTCCACTACTGCTTAGGGAGATAAGA-TCAG-TTTCTTTTG-TCTGTT
1 -TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTC-GCCGTC-TTCGATCTGCT
21981686 CCACTACTGCTTAGGGAGATAAGA
63 CCACTACTGCTTAGGGAGATAAGA
21981710 CTTGTAATCT
Statistics
Matches: 630, Mismatches: 96, Indels: 25
0.84 0.13 0.03
Matches are distributed among these distances:
126 32 0.05
127 32 0.05
130 47 0.07
131 448 0.71
132 70 0.11
133 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (131 bp):
TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCA
CTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGA
C
Found at i:21982936 original size:20 final size:20
Alignment explanation
Indices: 21982913--21982964 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
21982903 AGCCTCTCCA
* *
21982913 TTTTCATTTTTTATTTTTAT
1 TTTTCATTTTTTATTCTCAT
* *
21982933 TTTTCCTTTTTCATTCTCAT
1 TTTTCATTTTTTATTCTCAT
*
21982953 TTGTCATTTTTT
1 TTTTCATTTTTT
21982965 TTGACTCAGA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.12, C:0.13, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTTCATTTTTTATTCTCAT
Found at i:21983823 original size:6 final size:6
Alignment explanation
Indices: 21983812--21983840 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
21983802 TGGCATCTCC
21983812 TTTTCT TTTTCT TTTTCT TTTTCT TTTTC
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTC
21983841 ATCCTGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTCT
Found at i:21983962 original size:56 final size:53
Alignment explanation
Indices: 21983867--21983974 Score: 126
Period size: 53 Copynumber: 2.0 Consensus size: 53
21983857 TAGATTTCTC
*
21983867 TTTTTTCATTCTTCTTTCTTTTTTCTCATTTTCATTTTGATCTTGATTTTGAT
1 TTTTTTCATTCTTCTTTCTTTTTTCTCATTTTCATTTTGATCTTCATTTTGAT
* * * * * *
21983920 TTTTTTCTTTCTTCTTTTTATTTTTTTTATTTTGATTTTTTGATTTTCATTTTGA
1 TTTTTTCATTCTTCTTTCT-TTTTTCTCATTTTCA--TTTTGATCTTCATTTTGA
21983975 CTTTGATTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
53 17 0.38
54 12 0.27
56 16 0.36
ACGTcount: A:0.11, C:0.11, G:0.06, T:0.72
Consensus pattern (53 bp):
TTTTTTCATTCTTCTTTCTTTTTTCTCATTTTCATTTTGATCTTCATTTTGAT
Found at i:21991480 original size:11 final size:11
Alignment explanation
Indices: 21991446--21991503 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
21991436 AAATTTAAGT
*
21991446 GAGAAATTAGA
1 GAGAAATTCGA
*
21991457 AAGAAATT-GA
1 GAGAAATTCGA
*
21991467 GAGAAATTCAA
1 GAGAAATTCGA
* *
21991478 GAGAGATTTGA
1 GAGAAATTCGA
21991489 GAGAAATTCGA
1 GAGAAATTCGA
21991500 GAGA
1 GAGA
21991504 GATTTAAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.50, C:0.03, G:0.28, T:0.19
Consensus pattern (11 bp):
GAGAAATTCGA
Found at i:21991491 original size:22 final size:22
Alignment explanation
Indices: 21991463--21991508 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
21991453 TAGAAAGAAA
21991463 TTGAGAGAAATTCAAGAGAGAT
1 TTGAGAGAAATTCAAGAGAGAT
*
21991485 TTGAGAGAAATTCGAGAGAGAT
1 TTGAGAGAAATTCAAGAGAGAT
21991507 TT
1 TT
21991509 AAAAATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.04, G:0.28, T:0.26
Consensus pattern (22 bp):
TTGAGAGAAATTCAAGAGAGAT
Found at i:22009949 original size:30 final size:30
Alignment explanation
Indices: 22009902--22009973 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
22009892 GGCCATGTGA
* *
22009902 CAGCCC-TGATGGCTCACACGACTGTGTGTC
1 CAGCCCGTG-TGGCTCACACAACTGAGTGTC
*
22009932 CAGCCCGTGTGGTTCACACAACTGAGTGTC
1 CAGCCCGTGTGGCTCACACAACTGAGTGTC
**
22009962 CAGGTCGTGTGG
1 CAGCCCGTGTGG
22009974 AATAGCCTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 34 0.94
31 2 0.06
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.24
Consensus pattern (30 bp):
CAGCCCGTGTGGCTCACACAACTGAGTGTC
Found at i:22022904 original size:692 final size:692
Alignment explanation
Indices: 22021576--22022961 Score: 2745
Period size: 692 Copynumber: 2.0 Consensus size: 692
22021566 GTTGAAAAGA
*
22021576 AACAGTGTGCGGCTTATCATGTCTCGATATCACATGCTACAAAACAAATGTTGAACAAAACTCTA
1 AACAATGTGCGGCTTATCATGTCTCGATATCACATGCTACAAAACAAATGTTGAACAAAACTCTA
22021641 GTGTGAGTTCTGAATAAGTAGGCTTTATGATGGTGAAAAATCAGTCCCATGGAGCTGTATCAATC
66 GTGTGAGTTCTGAATAAGTAGGCTTTATGATGGTGAAAAATCAGTCCCATGGAGCTGTATCAATC
22021706 AGTGCTAGCATTCTATCAGCTAGATGTATTGTCTGTAATGCTACATAGTTGATGTAATGTCCTAA
131 AGTGCTAGCATTCTATCAGCTAGATGTATTGTCTGTAATGCTACATAGTTGATGTAATGTCCTAA
22021771 ACCCAAGGGTCTCTGCTTAAGAACTTGATATAGGTCCTCGTGAGGGCCCGGTGGAAACCGTAGGC
196 ACCCAAGGGTCTCTGCTTAAGAACTTGATATAGGTCCTCGTGAGGGCCCGGTGGAAACCGTAGGC
22021836 AAGGATGGCGTGTGTCGGAGGTGAGGCCCGAGGAAAAGGTTGTGCTCAGAGTCTTTCACTTTTTT
261 AAGGATGGCGTGTGTCGGAGGTGAGGCCCGAGGAAAAGGTTGTGCTCAGAGTCTTTCACTTTTTT
22021901 GAAGCGGGAACAACAGTCTTAGTCTTACCTCGCATGTTTGTCCTTATATAAAAGCTAATATCGGA
326 GAAGCGGGAACAACAGTCTTAGTCTTACCTCGCATGTTTGTCCTTATATAAAAGCTAATATCGGA
22021966 TAATTGGAAAAATCAGCATAGATAACAAGAAATCGATAGAGAGACAAGTCGACAAATAAAAGAAA
391 TAATTGGAAAAATCAGCATAGATAACAAGAAATCGATAGAGAGACAAGTCGACAAATAAAAGAAA
22022031 ACAACCATTCCAGTCTAATAAATGGCACGGCAGAGTCCAAATCTTAGTTAAAACCTAAACCACAA
456 ACAACCATTCCAGTCTAATAAATGGCACGGCAGAGTCCAAATCTTAGTTAAAACCTAAACCACAA
22022096 GATTGAACAACTAACCTAAAAATAAATTCATCAATACTTAACATGATAAATACAGTAACAACATA
521 GATTGAACAACTAACCTAAAAATAAATTCATCAATACTTAACATGATAAATACAGTAACAACATA
22022161 AAAATAAAAAAAAGAAAATAAAAAACCAATCAAGGCCAATTAATAAAACAACTAACAATAATGAA
586 AAAATAAAAAAAAGAAAATAAAAAACCAATCAAGGCCAATTAATAAAACAACTAACAATAATGAA
22022226 ACACAAAAAACAAATAACAGTATAATAATAAATAAATATAAT
651 ACACAAAAAACAAATAACAGTATAATAATAAATAAATATAAT
22022268 AACAATGTGCGGCTTATCATGTCTCGATATCACATGCTACAAAACAAATGTTGAACAAAACTCTA
1 AACAATGTGCGGCTTATCATGTCTCGATATCACATGCTACAAAACAAATGTTGAACAAAACTCTA
22022333 GTGTGAGTTCTGAATAAGTAGGCTTTATGATGGTGAAAAATCAGTCCCATGGAGCTGTATCAATC
66 GTGTGAGTTCTGAATAAGTAGGCTTTATGATGGTGAAAAATCAGTCCCATGGAGCTGTATCAATC
22022398 AGTGCTAGCATTCTATCAGCTAGATGTATTGTCTGTAATGCTACATAGTTGATGTAATGTCCTAA
131 AGTGCTAGCATTCTATCAGCTAGATGTATTGTCTGTAATGCTACATAGTTGATGTAATGTCCTAA
22022463 ACCCAAGGGTCTCTGCTTAAGAACTTGATATAGGTCCTCGTGAGGGCCCGGTGGAAACCGTAGGC
196 ACCCAAGGGTCTCTGCTTAAGAACTTGATATAGGTCCTCGTGAGGGCCCGGTGGAAACCGTAGGC
22022528 AAGGATGGCGTGTGTCGGAGGTGAGGCCCGAGGAAAAGGTTGTGCTCAGAGTCTTTCACTTTTTT
261 AAGGATGGCGTGTGTCGGAGGTGAGGCCCGAGGAAAAGGTTGTGCTCAGAGTCTTTCACTTTTTT
22022593 GAAGCGGGAACAACAGTCTTAGTCTTACCTCGCATGTTTGTCCTTATATAAAAGCTAATATCGGA
326 GAAGCGGGAACAACAGTCTTAGTCTTACCTCGCATGTTTGTCCTTATATAAAAGCTAATATCGGA
22022658 TAATTGGAAAAATCAGCATAGATAACAAGAAATCGATAGAGAGACAAGTCGACAAATAAAAGAAA
391 TAATTGGAAAAATCAGCATAGATAACAAGAAATCGATAGAGAGACAAGTCGACAAATAAAAGAAA
22022723 ACAACCATTCCAGTCTAATAAATGGCACGGCAGAGTCCAAATCTTAGTTAAAACCTAAACCACAA
456 ACAACCATTCCAGTCTAATAAATGGCACGGCAGAGTCCAAATCTTAGTTAAAACCTAAACCACAA
22022788 GATTGAACAACTAACCTAAAAATAAATTCATCAATACTTAACATGATAAATACAGTAACAACATA
521 GATTGAACAACTAACCTAAAAATAAATTCATCAATACTTAACATGATAAATACAGTAACAACATA
22022853 AAAATAAAAAAAAGAAAATAAAAAACCAATCAAGGCCAATTAATAAAACAACTAACAATAATGAA
586 AAAATAAAAAAAAGAAAATAAAAAACCAATCAAGGCCAATTAATAAAACAACTAACAATAATGAA
* *
22022918 ACACAAAAAACAAATAACAGTATAATACTAAGTAAATATAAT
651 ACACAAAAAACAAATAACAGTATAATAATAAATAAATATAAT
22022960 AA
1 AA
22022962 AAATAATAAT
Statistics
Matches: 691, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
692 691 1.00
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (692 bp):
AACAATGTGCGGCTTATCATGTCTCGATATCACATGCTACAAAACAAATGTTGAACAAAACTCTA
GTGTGAGTTCTGAATAAGTAGGCTTTATGATGGTGAAAAATCAGTCCCATGGAGCTGTATCAATC
AGTGCTAGCATTCTATCAGCTAGATGTATTGTCTGTAATGCTACATAGTTGATGTAATGTCCTAA
ACCCAAGGGTCTCTGCTTAAGAACTTGATATAGGTCCTCGTGAGGGCCCGGTGGAAACCGTAGGC
AAGGATGGCGTGTGTCGGAGGTGAGGCCCGAGGAAAAGGTTGTGCTCAGAGTCTTTCACTTTTTT
GAAGCGGGAACAACAGTCTTAGTCTTACCTCGCATGTTTGTCCTTATATAAAAGCTAATATCGGA
TAATTGGAAAAATCAGCATAGATAACAAGAAATCGATAGAGAGACAAGTCGACAAATAAAAGAAA
ACAACCATTCCAGTCTAATAAATGGCACGGCAGAGTCCAAATCTTAGTTAAAACCTAAACCACAA
GATTGAACAACTAACCTAAAAATAAATTCATCAATACTTAACATGATAAATACAGTAACAACATA
AAAATAAAAAAAAGAAAATAAAAAACCAATCAAGGCCAATTAATAAAACAACTAACAATAATGAA
ACACAAAAAACAAATAACAGTATAATAATAAATAAATATAAT
Found at i:22022970 original size:12 final size:12
Alignment explanation
Indices: 22022951--22023124 Score: 55
Period size: 12 Copynumber: 14.8 Consensus size: 12
22022941 AATACTAAGT
22022951 AAAT-ATAATAA
1 AAATAATAATAA
22022962 AAATAATAAT-A
1 AAATAATAATAA
22022973 AAAT-AT-ATAA
1 AAATAATAATAA
* *
22022983 ATAATAAT-GTATT
1 A-AATAATAATA-A
**
22022996 AAATAGGAATAA
1 AAATAATAATAA
*
22023008 GAATAATAATAA
1 AAATAATAATAA
* *
22023020 GAATTATAA-AA
1 AAATAATAATAA
*
22023031 CAAAGAA-AGATAA
1 -AAATAATA-ATAA
* *
22023044 TATAATAAGAATAT
1 -A-AATAATAATAA
*
22023058 AAATAAAAATCAA
1 AAATAATAAT-AA
* *
22023071 TAATAA-ACTAA
1 AAATAATAATAA
* *
22023082 ATATGATAATAA
1 AAATAATAATAA
*
22023094 AAATTATAAT-A
1 AAATAATAATAA
22023105 AAATAA-AA-AA
1 AAATAATAATAA
22023115 TAAATAATAA
1 -AAATAATAA
22023125 GGTAAATGAA
Statistics
Matches: 120, Mismatches: 27, Indels: 31
0.67 0.15 0.17
Matches are distributed among these distances:
9 2 0.02
10 7 0.06
11 32 0.27
12 58 0.48
13 13 0.11
14 7 0.06
15 1 0.01
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (12 bp):
AAATAATAATAA
Found at i:22027034 original size:19 final size:19
Alignment explanation
Indices: 22027012--22027051 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
22027002 ATTAAATGTG
*
22027012 AATATAAAATTAAAACAAA
1 AATATAAAAATAAAACAAA
*
22027031 AATATAAAAATAAAATAAA
1 AATATAAAAATAAAACAAA
22027050 AA
1 AA
22027052 CGATTAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (19 bp):
AATATAAAAATAAAACAAA
Found at i:22031312 original size:16 final size:16
Alignment explanation
Indices: 22031291--22031326 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
22031281 TTTGGTTCGC
22031291 TGTATTGAATTAGAGG
1 TGTATTGAATTAGAGG
*
22031307 TGTATTGGATTAGAGG
1 TGTATTGAATTAGAGG
22031323 TGTA
1 TGTA
22031327 ATGGAATGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.39
Consensus pattern (16 bp):
TGTATTGAATTAGAGG
Found at i:22031331 original size:16 final size:16
Alignment explanation
Indices: 22031299--22031331 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22031289 GCTGTATTGA
*
22031299 ATTAGAGGTGTATTGG
1 ATTAGAGGTGTAATGG
22031315 ATTAGAGGTGTAATGG
1 ATTAGAGGTGTAATGG
22031331 A
1 A
22031332 ATGAGGCGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.33
Consensus pattern (16 bp):
ATTAGAGGTGTAATGG
Found at i:22037442 original size:22 final size:22
Alignment explanation
Indices: 22037423--22037496 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 22
22037413 AATGGCTAAG
*
22037423 AGCCGTAAACAGGATAGCTATA
1 AGCCATAAACAGGATAGCTATA
* *
22037445 AGCTATAAATAGGATAGCTATA
1 AGCCATAAACAGGATAGCTATA
* * *
22037467 AGCTATAAACAGAAT-GACTACA
1 AGCCATAAACAGGATAG-CTATA
22037489 AGCCATAA
1 AGCCATAA
22037497 GTACAATAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 1 0.02
22 43 0.98
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20
Consensus pattern (22 bp):
AGCCATAAACAGGATAGCTATA
Found at i:22037596 original size:32 final size:32
Alignment explanation
Indices: 22037560--22037626 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
22037550 ACAACCATCG
*
22037560 GTAACGATAATATGATCAGTACAAAGCAATTA
1 GTAACGATAATATGATCAGCACAAAGCAATTA
** *
22037592 GTAACGATAATATGATTGGCACAAAGCCATTA
1 GTAACGATAATATGATCAGCACAAAGCAATTA
22037624 GTA
1 GTA
22037627 GCATCCCAGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.25
Consensus pattern (32 bp):
GTAACGATAATATGATCAGCACAAAGCAATTA
Found at i:22037825 original size:24 final size:24
Alignment explanation
Indices: 22037798--22037852 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
22037788 CCATGCTCAG
22037798 AATCAGTCATACAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
* *
22037822 AATCAGTCATACCAATCATAGACA
1 AATCAGTCATACAAATCACAGACA
22037846 AATCAGT
1 AATCAGT
22037853 TATTTATATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.47, C:0.24, G:0.09, T:0.20
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:22037881 original size:24 final size:24
Alignment explanation
Indices: 22037836--22037882 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
22037826 AGTCATACCA
* *
22037836 ATCATAGACAAATCAGTTATTTAT
1 ATCATAGACAAATCAATCATTTAT
*
22037860 ATCATGGACAAATCAATCATTTA
1 ATCATAGACAAATCAATCATTTA
22037883 CACTCGAGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.34
Consensus pattern (24 bp):
ATCATAGACAAATCAATCATTTAT
Found at i:22037944 original size:27 final size:27
Alignment explanation
Indices: 22037905--22038127 Score: 175
Period size: 27 Copynumber: 8.3 Consensus size: 27
22037895 AAAATAGTCA
* *
22037905 TTTACCCTCTAGGGGCATTACGATCAT
1 TTTACCCTATAGGGGTATTACGATCAT
* * * *
22037932 TTTACCTTATAGGGGTATTTCGGTCAG
1 TTTACCCTATAGGGGTATTACGATCAT
* *
22037959 TTTACCCTATGGGGGTATTACGATTAT
1 TTTACCCTATAGGGGTATTACGATCAT
* * *
22037986 TTTACCCTATAAGGGCATTACGACCAT
1 TTTACCCTATAGGGGTATTACGATCAT
* *
22038013 TTTACCCTAT-GGGGTTTTTC-AGTCAT
1 TTTACCCTATAGGGGTATTACGA-TCAT
* *
22038039 TTTACCCTACAAGGGTATTAC-AGTCAT
1 TTTACCCTATAGGGGTATTACGA-TCAT
* * * * *
22038066 TTTACCTTACAGGGGCATTATGGTCAT
1 TTTACCCTATAGGGGTATTACGATCAT
* * **
22038093 TTGACCCTA-CGAGGGTATTTTGATCAT
1 TTTACCCTATAG-GGGTATTACGATCAT
22038120 TTTACCCT
1 TTTACCCT
22038128 TCGAGGGTAT
Statistics
Matches: 154, Mismatches: 38, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
25 1 0.01
26 19 0.12
27 134 0.87
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (27 bp):
TTTACCCTATAGGGGTATTACGATCAT
Found at i:22038046 original size:26 final size:27
Alignment explanation
Indices: 22037928--22038219 Score: 144
Period size: 27 Copynumber: 10.9 Consensus size: 27
22037918 GGCATTACGA
* * * * *
22037928 TCATTTTACCTTATAGGGGTATTTCGG
1 TCATTTTACCCTACAAGGGTATTACAG
* ***
22037955 TCAGTTTACCCTATGGGGGTATTAC-G
1 TCATTTTACCCTACAAGGGTATTACAG
* * *
22037981 ATTATTTTACCCTATAAGGGCATTAC-G
1 -TCATTTTACCCTACAAGGGTATTACAG
* ** * *
22038008 ACCATTTTACCCTA-TGGGGTTTTTCAG
1 -TCATTTTACCCTACAAGGGTATTACAG
22038035 TCATTTTACCCTACAAGGGTATTACAG
1 TCATTTTACCCTACAAGGGTATTACAG
* * * **
22038062 TCATTTTACCTTACAGGGGCATTATGG
1 TCATTTTACCCTACAAGGGTATTACAG
* * **
22038089 TCATTTGACCCTACGAGGGTATT-TTG
1 TCATTTTACCCTACAAGGGTATTACAG
* * ***
22038115 ATCATTTTACCCTTCGAGGGTATTTTTG
1 -TCATTTTACCCTACAAGGGTATTACAG
* *
22038143 TCATTTTACCC-ATCAAGGGTATTTCAA
1 TCATTTTACCCTA-CAAGGGTATTACAG
* ** * *
22038170 TAATTTTACCCTTTAAGGGCATTTCAG
1 TCATTTTACCCTACAAGGGTATTACAG
* * *
22038197 TAATTTTACCCTTCGAGGGTATT
1 TCATTTTACCCTACAAGGGTATT
22038220 TCGGTAATTT
Statistics
Matches: 211, Mismatches: 47, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
26 21 0.10
27 187 0.89
28 3 0.01
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.39
Consensus pattern (27 bp):
TCATTTTACCCTACAAGGGTATTACAG
Found at i:22038221 original size:27 final size:27
Alignment explanation
Indices: 22038010--22038221 Score: 166
Period size: 27 Copynumber: 7.9 Consensus size: 27
22038000 GCATTACGAC
*
22038010 CATTTTACCCTAT-G-GGGTTTTTCAGT
1 CATTTTACCCT-TCGAGGGTATTTCAGT
* * *
22038036 CATTTTACCCTACAAGGGTATTACAGT
1 CATTTTACCCTTCGAGGGTATTTCAGT
* *
22038063 CATTTTA-CCTTAC-AGGGGCATTAT-GGT
1 CATTTTACCCTT-CGA-GGGTATT-TCAGT
* * *
22038090 CATTTGACCCTACGAGGGTATTT-TGAT
1 CATTTTACCCTTCGAGGGTATTTCAG-T
**
22038117 CATTTTACCCTTCGAGGGTATTTTTGT
1 CATTTTACCCTTCGAGGGTATTTCAGT
* * *
22038144 CATTTTACCCATCAAGGGTATTTCAAT
1 CATTTTACCCTTCGAGGGTATTTCAGT
* ** *
22038171 AATTTTACCCTTTAAGGGCATTTCAGT
1 CATTTTACCCTTCGAGGGTATTTCAGT
*
22038198 AATTTTACCCTTCGAGGGTATTTC
1 CATTTTACCCTTCGAGGGTATTTC
22038222 GGTAATTTGC
Statistics
Matches: 150, Mismatches: 27, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
26 17 0.11
27 127 0.85
28 6 0.04
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (27 bp):
CATTTTACCCTTCGAGGGTATTTCAGT
Found at i:22040019 original size:28 final size:28
Alignment explanation
Indices: 22039984--22040039 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
22039974 CATTGCCATC
22039984 TCTCACAATTCTTTTCTCCTTCTTCTCA
1 TCTCACAATTCTTTTCTCCTTCTTCTCA
22040012 TCTCACAATTCTTTTCTCCTTCTTCTCA
1 TCTCACAATTCTTTTCTCCTTCTTCTCA
22040040 AGGTTTTCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.14, C:0.36, G:0.00, T:0.50
Consensus pattern (28 bp):
TCTCACAATTCTTTTCTCCTTCTTCTCA
Found at i:22043589 original size:57 final size:56
Alignment explanation
Indices: 22043525--22043641 Score: 164
Period size: 57 Copynumber: 2.1 Consensus size: 56
22043515 TCTTTTTCAT
* * *
22043525 TTTTCATTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGATTCC-ATTTCTCCA
1 TTTTCATTTCCATTTTGGAGAAAA--ACAATCATTTCCAAATGATTCCTATTTCACCA
* *
22043582 TTTTCATTTCCATTTTGGAGAAAAATAATCATTTCCAAATGTTTCCTATTTCACCA
1 TTTTCATTTCCATTTTGGAGAAAAACAATCATTTCCAAATGATTCCTATTTCACCA
22043638 TTTT
1 TTTT
22043642 TACCATTTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
55 19 0.35
56 12 0.22
57 23 0.43
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (56 bp):
TTTTCATTTCCATTTTGGAGAAAAACAATCATTTCCAAATGATTCCTATTTCACCA
Found at i:22046661 original size:30 final size:32
Alignment explanation
Indices: 22046622--22046692 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 32
22046612 TAGTTTGCCC
* *
22046622 CCTGAACTTGTCC-AAAAGTACTTAGTTA-TA
1 CCTGAACTTGTCCAAAAAGTACCTAATTAGTA
*
22046652 CCTGCACTTGTCCAAAAAGTACCTAATTAGTA
1 CCTGAACTTGTCCAAAAAGTACCTAATTAGTA
22046684 CCTGAACTT
1 CCTGAACTT
22046693 ATTAAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 12 0.34
31 13 0.37
32 10 0.29
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (32 bp):
CCTGAACTTGTCCAAAAAGTACCTAATTAGTA
Found at i:22054064 original size:211 final size:211
Alignment explanation
Indices: 22053697--22054118 Score: 774
Period size: 211 Copynumber: 2.0 Consensus size: 211
22053687 ATTACAGTTT
22053697 GGTCCTATTTCGTTGTTTTCTTTTATTTTGATCTAGCCCTAAAATTTTACTTTTGTTTCATTTTA
1 GGTCCTATTTCGTTGTTTTCTTTTATTTTGATCTAGCCCTAAAATTTTACTTTTGTTTCATTTTA
* * *
22053762 GTCCCCATTAAAGCGCAGCATTTTGGGCTTTGGGGTATTTAACATTTTGGTCCCCCCTTTTCGGC
66 GTCCCCATCAAAGCGCAGCATTTTGGGCTTCGGGGTATTTAACATTTTGGTCCCCCCTTTTCGAC
22053827 GCGCGTCACAATTTAATCCTTTTTTTGTTTTTTATTTCGATTTCGCCCAATACTTTCGTTTTTAT
131 GCGCGTCACAATTTAATCCTTTTTTTGTTTTTTATTTCGATTTCGCCCAATACTTTCGTTTTTAT
*
22053892 TTTGATTTAGTCCATA
196 TTCGATTTAGTCCATA
22053908 GGTCCTATTTCGTTGTTTTCTTTTATTTTGATCTAGCCCTAAAATTTTACTTTTGTTTCATTTTA
1 GGTCCTATTTCGTTGTTTTCTTTTATTTTGATCTAGCCCTAAAATTTTACTTTTGTTTCATTTTA
* *
22053973 GTCCCCATCAAAGCGCAGCGTTTTGGGGCTTCGGGGTATTTACCATTTTGGTCCCCCCTTTTCGA
66 GTCCCCATCAAAGCGCAGCATTTT-GGGCTTCGGGGTATTTAACATTTTGGTCCCCCCTTTTCGA
22054038 CGCGCGTCACAATTTAATCC-TTTTTTGTTTTTTATTTCGATTTCGCCCAATACTTTCGTTTTTA
130 CGCGCGTCACAATTTAATCCTTTTTTTGTTTTTTATTTCGATTTCGCCCAATACTTTCGTTTTTA
22054102 TTTCGATTTAGTCCATA
195 TTTCGATTTAGTCCATA
22054119 TTTTAGCATT
Statistics
Matches: 204, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
211 147 0.72
212 57 0.28
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (211 bp):
GGTCCTATTTCGTTGTTTTCTTTTATTTTGATCTAGCCCTAAAATTTTACTTTTGTTTCATTTTA
GTCCCCATCAAAGCGCAGCATTTTGGGCTTCGGGGTATTTAACATTTTGGTCCCCCCTTTTCGAC
GCGCGTCACAATTTAATCCTTTTTTTGTTTTTTATTTCGATTTCGCCCAATACTTTCGTTTTTAT
TTCGATTTAGTCCATA
Done.