Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 67 of 79
Found at i:22054134 original size:3 final size:3
Alignment explanation
Indices: 22054126--22054159 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
22054116 ATATTTTAGC
* *
22054126 ATT ATT ATT ATT ATT ATT GTT ATT GTT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
22054160 CCTACTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:22059061 original size:14 final size:14
Alignment explanation
Indices: 22059044--22059070 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22059034 GAAAAAGGAA
22059044 AAAAAAGAGAAAAG
1 AAAAAAGAGAAAAG
22059058 AAAAAAGAGAAAA
1 AAAAAAGAGAAAA
22059071 AAGAGAGGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAAAGAGAAAAG
Found at i:22059072 original size:16 final size:16
Alignment explanation
Indices: 22059022--22059074 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
22059012 CAATAAAACT
*
22059022 AAAA-AAAAAAGGGAA
1 AAAAGAAAAAAGAGAA
* * *
22059037 AAAGGAAAAAAAAGAG
1 AAAAGAAAAAAGAGAA
22059053 AAAAGAAAAAAGAGAA
1 AAAAGAAAAAAGAGAA
22059069 AAAAGA
1 AAAAGA
22059075 GAGGCCAAGG
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
15 3 0.10
16 27 0.90
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAGAGAA
Found at i:22060359 original size:44 final size:44
Alignment explanation
Indices: 22060309--22060531 Score: 133
Period size: 44 Copynumber: 5.1 Consensus size: 44
22060299 AGACACAAAC
22060309 CTTGCCTCTCTCGGTTGTAACAGAGCTGGTTGAAGACAACAGAT
1 CTTGCCTCTCTCGGTTGTAACAGAGCTGGTTGAAGACAACAGAT
* * * * * * *
22060353 CTTGCCT-TC-CTGCATTG-ACAGCAAAACAT-ATCGAAGAC-ACAAAC
1 CTTGCCTCTCTC-G-GTTGTA-A-CAGAGC-TGGTTGAAGACAACAGAT
* *
22060397 CTTACCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGAT
1 CTTGCCTCTCTCGGTTGTAACAGAGCTGGTTGAAGACAACAGAT
* * * * * *
22060441 CTTGCCT-TC-CTGAATTG--ACAGCGAAACAGATTGAAGAC-ACAAAC
1 CTTGCCTCTCTC-G-GTTGTAACA--G-AGCTGGTTGAAGACAACAGAT
* *
22060485 CTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
1 CTTGCCTCTCTCGGTTGTAACAGAGCTGGTTGAAGACAACAGAT
22060529 CTT
1 CTT
22060532 ACCTTCCTGC
Statistics
Matches: 127, Mismatches: 32, Indels: 40
0.64 0.16 0.20
Matches are distributed among these distances:
42 5 0.04
43 29 0.23
44 60 0.47
45 29 0.23
46 4 0.03
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (44 bp):
CTTGCCTCTCTCGGTTGTAACAGAGCTGGTTGAAGACAACAGAT
Found at i:22060665 original size:44 final size:44
Alignment explanation
Indices: 22060617--22060755 Score: 120
Period size: 44 Copynumber: 3.2 Consensus size: 44
22060607 GACAACAGAT
22060617 CTTGCCTTCCTGAATCGACAGCGAAGCGGATCGAAGACACAAGC
1 CTTGCCTTCCTGAATCGACAGCGAAGCGGATCGAAGACACAAGC
* * * * * * * * ** *
22060661 CTTGCCTCCCTCAGTTG-TAGTGGAGCTGG-TTGAAGACAGTAGAT
1 CTTGCCTTCCTGAATCGACAGCGAAGC-GGATCGAAGACACAAG-C
* * *
22060705 CTTGCCTTCCTGCATCGACAACGAAGCGGATCGAAGATACAAGC
1 CTTGCCTTCCTGAATCGACAGCGAAGCGGATCGAAGACACAAGC
22060749 CTTGCCT
1 CTTGCCT
22060756 CCCTCTGTTT
Statistics
Matches: 66, Mismatches: 25, Indels: 8
0.67 0.25 0.08
Matches are distributed among these distances:
43 16 0.24
44 36 0.55
45 14 0.21
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.22
Consensus pattern (44 bp):
CTTGCCTTCCTGAATCGACAGCGAAGCGGATCGAAGACACAAGC
Found at i:22061478 original size:88 final size:88
Alignment explanation
Indices: 22060296--22061460 Score: 1625
Period size: 88 Copynumber: 13.2 Consensus size: 88
22060286 AACAGATCAG
***
22060296 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAACAGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * *
22060361 CCTGCATTGACAGCAAAACATAT
66 CCTGCATTGACAGCGAAGCAGAT
* **
22060384 CGAAGACACAAACCTTACCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
22060449 CCTGAATTGACAGCGAAACAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * *
22060472 TGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTACCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
22060537 CCTGCATTGACAGTGAAACAGAT
66 CCTGCATTGACAGCGAAGCAGAT
*
22060560 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGATGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * *
22060625 CCTGAATCGACAGCGAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * **
22060648 CGAAGACACAAGCCTTGCCTCCCTCAGTTGTAGTGGAGCTGGTTGAAGACAGTAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * *
22060713 CCTGCATCGACAACGAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * * * * * *
22060736 CGAAGATACAAGCCTTGCCTCCCTCTGTTTTAGTGGAGCTAGTTGAAGATAGCAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
22060801 CCTGCATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* **
22060824 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTAGTTGAAGACAGTAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
22060889 CCTGGATTGACAGC-AATGCAGAT
66 CCTGCATTGACAGCGAA-GCAGAT
* **
22060912 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTAGTTGAAGACAGTAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
22060977 CCTGGATTGACAGC-AATGCAGAT
66 CCTGCATTGACAGCGAA-GCAGAT
*
22061000 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
22061065 CCTGCATTGACAGC-AATGCAGAT
66 CCTGCATTGACAGCGAA-GCAGAT
* * *
22061088 CGAAGACACAAACCTTGCCTCTCTCAGTTGTAATGGAGCTGGTTGAAGACAACAAATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
22061153 CCTGCATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* *
22061176 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGATGACAACAGATCTTGACTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * * *
22061241 TCTGAATCGACAGCGAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * **
22061264 CGAAGACACAAGCCTTGCCTCCCTCAGTTGTAGTGGAGCTGGTTGAAGACAGTAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * *
22061329 CCTGTATCGACAGCGAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* ** * * * * *
22061352 CAAAGGTACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATTTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
22061417 CCTGCATCGACAGGGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
*
22061440 CGAAGACACAAGCCTTGCCTC
1 CGAAGACACAAACCTTGCCTC
22061461 CCTCAGCAGT
Statistics
Matches: 990, Mismatches: 85, Indels: 4
0.92 0.08 0.00
Matches are distributed among these distances:
87 2 0.00
88 986 1.00
89 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (88 bp):
CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
CCTGCATTGACAGCGAAGCAGAT
Found at i:22061636 original size:116 final size:116
Alignment explanation
Indices: 22061494--22061714 Score: 363
Period size: 116 Copynumber: 1.9 Consensus size: 116
22061484 GTAGATAGTG
* *
22061494 AATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGCCATTAGTTCTATCTCCCTAAGCAGT
1 AATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAAT
* * **
22061559 AGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA-CCCTAAGTCGAAGATGGT
66 ACTGGAATAGGTCAAAGATTGCAGATTCTGT-ATCCCTAAGTCGAAGATGGT
22061610 AATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAAT
1 AATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAAT
*
22061675 ACTGGAATAGGTCAAAGATTGTAGATTCTGTATCCCTAAG
66 ACTGGAATAGGTCAAAGATTGCAGATTCTGTATCCCTAAG
22061715 CAGTAGTGGA
Statistics
Matches: 97, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
115 1 0.01
116 96 0.99
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (116 bp):
AATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAAT
ACTGGAATAGGTCAAAGATTGCAGATTCTGTATCCCTAAGTCGAAGATGGT
Found at i:22061904 original size:99 final size:99
Alignment explanation
Indices: 22061733--22062231 Score: 675
Period size: 99 Copynumber: 5.0 Consensus size: 99
22061723 GAGCAAATCA
*
22061733 ACAACGGCGAATCTTACTTCCAAGCGATGCAGC-AGAACAGATTGAAGTCACAACGGCGAATCTT
1 ACAACGGCGAATCTTACTTCCAAGCGATGCAGCGA-AACAGATTGAAGTCACAACGGTGAATCTT
* * *
22061797 GTGTCCCCGACATTGTAATTCAGAAGATTGAAGCC
65 GCGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
* *
22061832 ACAACGGCAAATCTTACTTCCAAGCGATGCAGCGAAATAGATTGAAGTCACAACGGTGAATCTTG
1 ACAACGGCGAATCTTACTTCCAAGCGATGCAGCGAAACAGATTGAAGTCACAACGGTGAATCTTG
* *
22061897 CATCCCCGACATTGCAATTCAAAAGATTGAAGCT
66 CGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
22061931 ACAACGGCGAATCTTACTTCCAAGCGATGCAGCGGAAA-AGATTGAAGTCACAACGGTGAATCTT
1 ACAACGGCGAATCTTACTTCCAAGCGATGCAGC-GAAACAGATTGAAGTCACAACGGTGAATCTT
22061995 GCGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
65 GCGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
* * *
22062030 ACCACGGCGAATCTTACTTCCCAGGCGATGCAGCGAAACAGATTGAAG-CTACGACGGTGAATCT
1 ACAACGGCGAATCTTACTT-CCAAGCGATGCAGCGAAACAGATTGAAGTC-ACAACGGTGAATCT
* * *
22062094 CGCTTCCCCGACATTGCAATTCAAAATATTGAAGCC
64 TGCGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
* * * * * *
22062130 ACAACGGTGAATCTTACCTTCCCAGGCGGTGCCGTGAAACAGATTGAAG-CTACGACGGTGAATC
1 ACAACGGCGAATCTTA-CTT-CCAAGCGATGCAGCGAAACAGATTGAAGTC-ACAACGGTGAATC
* * * *
22062194 TTACTTCCCCGACATTGTAGTT-AAACAGATTGAAGCC
63 TTGCGTCCCCGACATTGCAATTCAAA-AGATTGAAGCC
22062231 A
1 A
22062232 ATAATTCTAT
Statistics
Matches: 366, Mismatches: 27, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
99 203 0.55
100 90 0.25
101 73 0.20
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (99 bp):
ACAACGGCGAATCTTACTTCCAAGCGATGCAGCGAAACAGATTGAAGTCACAACGGTGAATCTTG
CGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
Found at i:22062224 original size:50 final size:49
Alignment explanation
Indices: 22061771--22062229 Score: 306
Period size: 50 Copynumber: 9.2 Consensus size: 49
22061761 GCAGCAGAAC
* * * * *
22061771 AGATTGAAG-TCACAACGGCGAATCTT-GTGTCCCCGACATTGTAATTCAGA
1 AGATTGAAGCT-ACAACGGTGAATCTTACT-TCCCCGACATTGCAGTT-AAA
* ** ** **
22061821 AGATTGAAGCCACAACGGCAAATCTTACTTCCAAG-CGA-TGCAGCGAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGAC-ATTGCAGTTAAA
* * *
22061869 TAGATTGAAG-TCACAACGGTGAATCTTGCATCCCCGACATTGCAATTCAAA
1 -AGATTGAAGCT-ACAACGGTGAATCTTACTTCCCCGACATTGCAGTT-AAA
* ** **
22061920 AGATTGAAGCTACAACGGCGAATCTTACTTCCAAG-CGA-TGCAGCGGAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGAC-ATTGCAG-TTAAA
* * *
22061969 AGATTGAAG-TCACAACGGTGAATCTTGCGTCCCCGACATTGCAATTCAAA
1 AGATTGAAGCT-ACAACGGTGAATCTTACTTCCCCGACATTGCAGTT-AAA
* * * * * **
22062019 AGATTGAAGCCACCACGGCGAATCTTACTTCCCAGGCGA-TGCAGCGAAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGAC-ATTGCAGTTAAA
* ** *
22062068 CAGATTGAAGCTACGACGGTGAATCTCGCTTCCCCGACATTGCAATTCAAA
1 -AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAGTT-AAA
* * * * ** * *
22062119 ATATTGAAGCCACAACGGTGAATCTTACCTTCCCAGGCGGTGCCGTGAAA
1 AGATTGAAGCTACAACGGTGAATCTTA-CTTCCCCGACATTGCAGTTAAA
* *
22062169 CAGATTGAAGCTACGACGGTGAATCTTACTTCCCCGACATTGTAGTTAAA
1 -AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAGTTAAA
22062219 CAGATTGAAGC
1 -AGATTGAAGC
22062230 CAATAATTCT
Statistics
Matches: 309, Mismatches: 78, Indels: 44
0.72 0.18 0.10
Matches are distributed among these distances:
48 3 0.01
49 73 0.24
50 188 0.61
51 45 0.15
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (49 bp):
AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAGTTAAA
Found at i:22062419 original size:44 final size:43
Alignment explanation
Indices: 22062239--22062549 Score: 130
Period size: 44 Copynumber: 7.2 Consensus size: 43
22062229 CCAATAATTC
* * *
22062239 TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTTAGATCT
1 TATCTCCCTGGTT-GCAGTGGAGTAGATTGAAGATGTCAGATCT
* ** * * * * *
22062283 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGA-ATTT
1 TATCTCCCT-GGTTGCAGTGGAGTAGATTGAAGAT-GTCAGATCT
* * * *
22062327 TACCTCCCTGTGGTTACAGTAGAGTACATTGAAGCCA-GT-A-AT-T
1 TATCTCCC--TGGTTGCAGTGGAGTAGATTGAAG--ATGTCAGATCT
*
22062370 CTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGTCAGATCT
1 -TATCTCCCTGGTT-GCAGTGGAGTAGATTGAAGATGTCAGATCT
* * * * *
22062415 TATCTCCC----T-AAGTGGAGCAGATTGAACATGACAGATTT
1 TATCTCCCTGGTTGCAGTGGAGTAGATTGAAGATGTCAGATCT
* * *
22062453 TACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCA-GT-A-AT-T
1 TATCTCCCTG-G-TTGCAGTGGAGTAGATTGAAG--ATGTCAGATCT
* * *
22062496 CAATCTCCCTGGTTGGCAGTGGAATAGATTGAAGAT-TACAGATCC
1 -TATCTCCCTGGTT-GCAGTGGAGTAGATTGAAGATGT-CAGATCT
22062541 TATCTCCCT
1 TATCTCCCT
22062550 AAACAGTAGT
Statistics
Matches: 195, Mismatches: 44, Indels: 56
0.66 0.15 0.19
Matches are distributed among these distances:
38 30 0.15
40 1 0.01
41 3 0.02
42 9 0.05
43 36 0.18
44 77 0.39
45 35 0.18
46 2 0.01
47 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (43 bp):
TATCTCCCTGGTTGCAGTGGAGTAGATTGAAGATGTCAGATCT
Found at i:22062423 original size:132 final size:130
Alignment explanation
Indices: 22062222--22062562 Score: 496
Period size: 126 Copynumber: 2.6 Consensus size: 130
22062212 AGTTAAACAG
* *
22062222 ATTGAAGCCAATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTTAGATCTTATC
1 ATTGAAGCCAGTAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGA-TTCAGATCTTATC
* ** *
22062287 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATG-GTGAATTTTACCTCCCTGTGGTTACAGTAGAG
65 TCCCTAA-CAGTAGTGGAGCAGATCGAACATGACAG-ATTTTACCTCCCTGTGATTACAGTAGAG
22062351 TAC
128 TAC
22062354 ATTGAAGCCAGTAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGTCAGATCTTATC
1 ATTGAAGCCAGTAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGAT-TCAGATCTTATC
* *
22062419 TCCCT---A--AGTGGAGCAGATTGAACATGACAGATTTTACCTCCCTGTGATTACAGTGGAGTA
65 TCCCTAACAGTAGTGGAGCAGATCGAACATGACAGATTTTACCTCCCTGTGATTACAGTAGAGTA
22062479 C
130 C
* *
22062480 ATTGAAGCCAGTAATTCAATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCCTATC
1 ATTGAAGCCAGTAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATT-CAGATCTTATC
22062545 TCCCTAAACAGTAGTGGA
65 TCCCT-AACAGTAGTGGA
22062563 ATAGGTCAAA
Statistics
Matches: 190, Mismatches: 10, Indels: 18
0.87 0.05 0.08
Matches are distributed among these distances:
125 1 0.01
126 113 0.59
127 1 0.01
128 1 0.01
130 1 0.01
131 1 0.01
132 72 0.38
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (130 bp):
ATTGAAGCCAGTAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTCAGATCTTATCT
CCCTAACAGTAGTGGAGCAGATCGAACATGACAGATTTTACCTCCCTGTGATTACAGTAGAGTAC
Found at i:22062575 original size:44 final size:44
Alignment explanation
Indices: 22062513--22062619 Score: 106
Period size: 44 Copynumber: 2.4 Consensus size: 44
22062503 CCTGGTTGGC
** *
22062513 AGTGGAATAGATTGAAGATTACAGATCCTATCTCCCTAAACAGT
1 AGTGGAATAGATCAAAGATTACAAATCCTATCTCCCTAAACAGT
* * * * * *
22062557 AGTGGAATAGGTCAAAGATTGCAAATTCTGTCTCCTTAAGCAGT
1 AGTGGAATAGATCAAAGATTACAAATCCTATCTCCCTAAACAGT
***
22062601 AGTGGTGCAGATCAAAGAT
1 AGTGGAATAGATCAAAGAT
22062620 GGTGAATCTT
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (44 bp):
AGTGGAATAGATCAAAGATTACAAATCCTATCTCCCTAAACAGT
Found at i:22064445 original size:18 final size:17
Alignment explanation
Indices: 22064422--22064460 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
22064412 TGCTTTAATT
*
22064422 TTTTATTTGTTTATTTAC
1 TTTTATTTGTTGATTT-C
22064440 TTTTATTTGTTGATTTC
1 TTTTATTTGTTGATTTC
22064457 TTTT
1 TTTT
22064461 CATTATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.13, C:0.05, G:0.08, T:0.74
Consensus pattern (17 bp):
TTTTATTTGTTGATTTC
Found at i:22064766 original size:110 final size:110
Alignment explanation
Indices: 22064576--22064833 Score: 439
Period size: 110 Copynumber: 2.4 Consensus size: 110
22064566 ACGAAAAATT
22064576 TTTC-AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* * * *
22064640 CGATTTTTCTCGTTCAATCAAATGGCTTAATATCCTTTTAAAAAA
66 CGATTTTTCTCATTCAACCAAACGGCTAAATATCCTTTTAAAAAA
*
22064685 TTT-AAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCTTAAGGTGCTGGGTG
1 TTTCAAAATAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
*
22064749 TCGATTTTTCTCATTCAACCAAACGGCTAAATATCTTTTTAAAAAA
65 TCGATTTTTCTCATTCAACCAAACGGCTAAATATCCTTTTAAAAAA
22064795 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG
22064834 GAACGTGACC
Statistics
Matches: 140, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
109 26 0.19
110 90 0.64
111 24 0.17
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34
Consensus pattern (110 bp):
TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
CGATTTTTCTCATTCAACCAAACGGCTAAATATCCTTTTAAAAAA
Found at i:22065285 original size:18 final size:18
Alignment explanation
Indices: 22065262--22065310 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 18
22065252 TATTTGATTT
22065262 TATTCATTTTTATTATTG
1 TATTCATTTTTATTATTG
*
22065280 TATTCA-TTATATTATTG
1 TATTCATTTTTATTATTG
22065297 ---TCATTTTTATTATT
1 TATTCATTTTTATTATT
22065311 TATGGCATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
14 3 0.11
15 9 0.32
17 10 0.36
18 6 0.21
ACGTcount: A:0.24, C:0.06, G:0.04, T:0.65
Consensus pattern (18 bp):
TATTCATTTTTATTATTG
Found at i:22073590 original size:94 final size:93
Alignment explanation
Indices: 22073429--22074219 Score: 701
Period size: 94 Copynumber: 8.4 Consensus size: 93
22073419 GGTGACTCCC
* * * ** * * *
22073429 ATATCCCTGAAGGTGCAGTGGAT-CAGATCAAAGTTACAAGGGCGAGTCTTATCTCTCTGAAGTT
1 ATATCCCTGAAGTTGCAGTGGATGGA-ATGAAA-TTACAATAGCAAATCTTATCTCCCTGAAGTT
* * *
22073493 GTAGTGGAGCAAGACGAATCTACAAATTCT
64 GTAGTGGAGCAAGATGAAGCTACAAATCCT
* * ** *
22073523 ATATCCCTGAAGTTGCAGTGGAATGGATTGAAATTACAGTAGCAAAT-TCTATCTAACTGAAATT
1 ATATCCCTGAAGTTGCAGTGG-ATGGAATGAAATTACAATAGCAAATCT-TATCTCCCTGAAGTT
* *
22073587 GTAGTGGAGCAAGGTAAAGCTACAAATCCT
64 GTAGTGGAGCAAGATGAAGCTACAAATCCT
** * * * * * * * *
22073617 ATATCTTTGAAGATGCAGTGAATCGAATCAAAGTTTCAATGGCGAATTTTATCTCCCTGAAGTTG
1 ATATCCCTGAAGTTGCAGTGGATGGAATGAAA-TTACAATAGCAAATCTTATCTCCCTGAAGTTG
* * * * *
22073682 CAATGAAGCAAGATGAAGCTATAAATCAT
65 TAGTGGAGCAAGATGAAGCTACAAATCCT
* * * * * * * *
22073711 ATACCCCTAAAGTTGTAGCGGGTTGGAATGAAACTACAATAGCAAACCTTATCTCCCTAAAGTTG
1 ATATCCCTGAAGTTGCAG-TGGATGGAATGAAATTACAATAGCAAATCTTATCTCCCTGAAGTTG
* * * *
22073776 CAGTGGAGCAAGGTAAAGCTACAAATCCA
65 TAGTGGAGCAAGATGAAGCTACAAATCCT
* * * **
22073805 ATATCCCTGAAGATGCAGTGGATCGG-ATCAAAGTTACAATGGTGAATCTTATCTCCCTGAAGTT
1 ATATCCCTGAAGTTGCAGTGGAT-GGAATGAAA-TTACAATAGCAAATCTTATCTCCCTGAAGTT
22073869 GTAGTGGAGCAAGATGAAGCTACAAATCCT
64 GTAGTGGAGCAAGATGAAGCTACAAATCCT
* * * * **
22073899 ATACCCCTGAAGTTGCAGTAGGTTGGAATGAAACTATAATAGCAAATCTTATCTCTATGAAGTTG
1 ATATCCCTGAAGTTGCAGT-GGATGGAATGAAATTACAATAGCAAATCTTATCTCCCTGAAGTTG
* *
22073964 TAGTGGAGCAAAATGAAGCTACATATCCT
65 TAGTGGAGCAAGATGAAGCTACAAATCCT
* * * * * *
22073993 ATA-CCCTTGAAGTTGTAGTGGGTCGGAA-GAAAGCTACAATGGTAAATCTTATCTCTCTGAAGT
1 ATATCCC-TGAAGTTGCAGTGGAT-GGAATGAAA-TTACAATAGCAAATCTTATCTCCCTGAAGT
* *
22074056 TGCAATGGAGCAAGATGAAGCTACAAATCCT
63 TGTAGTGGAGCAAGATGAAGCTACAAATCCT
* * * * * * * *
22074087 ATACCCCTGAAGTTGTAGTGGGTCGGAATAAAACTATAATGGAAAATCTTATCTCCCTGAAGTTG
1 ATATCCCTGAAGTTGCAGTGGAT-GGAATGAAATTACAATAGCAAATCTTATCTCCCTGAAGTTG
*
22074152 TAGTGGAGCAAGATGAAGCTACAAGTCCT
65 TAGTGGAGCAAGATGAAGCTACAAATCCT
* * * * *
22074181 ATACCCCTGAAGTTGTAGTGGGTCAGAATAAAATTACAA
1 ATATCCCTGAAGTTGCAGTGGAT-GGAATGAAATTACAA
22074220 ATCCTATATC
Statistics
Matches: 569, Mismatches: 113, Indels: 30
0.80 0.16 0.04
Matches are distributed among these distances:
93 27 0.05
94 511 0.90
95 30 0.05
96 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (93 bp):
ATATCCCTGAAGTTGCAGTGGATGGAATGAAATTACAATAGCAAATCTTATCTCCCTGAAGTTGT
AGTGGAGCAAGATGAAGCTACAAATCCT
Found at i:22073783 original size:188 final size:188
Alignment explanation
Indices: 22073429--22074219 Score: 872
Period size: 188 Copynumber: 4.2 Consensus size: 188
22073419 GGTGACTCCC
* * * * *
22073429 ATATCCCTGAAGGTGCAGTGGATC-AGATCAAAGTTACAAGGGCGAGTCTTATCTCTCTGAAGTT
1 ATATCCTTGAAGATGCAGTGGATCGA-ATCAAAGTTACAATGGCGAATCTTATCTCCCTGAAGTT
* * * * * * ** * *
22073493 GTAGTGGAGCAAGACGAATCTACAAATTCTATATCCCTGAAGTTGCAGTGGAATGGATTGAAATT
65 GCAATGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAACT
* ** *
22073558 ACAGTAGCAAAT-TCTATCTAACTGAAA-TTGTAGTGGAGCAAGGTAAAGCTACAAATCCT
130 ACAATAGCAAATCT-TATCTCCCT-AAAGTTGTAGTGGAGCAAGATAAAGCTACAAATCCT
* * * *
22073617 ATATCTTTGAAGATGCAGTGAATCGAATCAAAGTTTCAATGGCGAATTTTATCTCCCTGAAGTTG
1 ATATCCTTGAAGATGCAGTGGATCGAATCAAAGTTACAATGGCGAATCTTATCTCCCTGAAGTTG
* * * * * *
22073682 CAATGAAGCAAGATGAAGCTATAAATCATATACCCCTAAAGTTGTAGCGGGTTGGAATGAAACTA
66 CAATGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAACTA
* * * *
22073747 CAATAGCAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAAGGTAAAGCTACAAATCCA
131 CAATAGCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAAGATAAAGCTACAAATCCT
* * *
22073805 ATATCCCTGAAGATGCAGTGGATCGGATCAAAGTTACAATGGTGAATCTTATCTCCCTGAAGTTG
1 ATATCCTTGAAGATGCAGTGGATCGAATCAAAGTTACAATGGCGAATCTTATCTCCCTGAAGTTG
* * *
22073870 TAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTAGGTTGGAATGAAACTA
66 CAATGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAACTA
* ** * * * *
22073935 TAATAGCAAATCTTATCTCTATGAAGTTGTAGTGGAGCAAAATGAAGCTACATATCCT
131 CAATAGCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAAGATAAAGCTACAAATCCT
* * * * * * ** *
22073993 ATACCCTTGAAGTTGTAGTGGGTCGGAA-GAAAGCTACAATGGTAAATCTTATCTCTCTGAAGTT
1 ATATCCTTGAAGATGCAGTGGATC-GAATCAAAGTTACAATGGCGAATCTTATCTCCCTGAAGTT
* * *
22074057 GCAATGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCGGAATAAAACT
65 GCAATGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAACT
* * * * * *
22074122 ATAATGGAAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAGTCCT
130 ACAATAGCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAAGATAAAGCTACAAATCCT
* * * * * *
22074181 ATACCCCTGAAGTTGTAGTGGGTCAGAAT-AAAATTACAA
1 ATATCCTTGAAGATGCAGTGGATC-GAATCAAAGTTACAA
22074220 ATCCTATATC
Statistics
Matches: 513, Mismatches: 85, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
187 3 0.01
188 506 0.99
189 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (188 bp):
ATATCCTTGAAGATGCAGTGGATCGAATCAAAGTTACAATGGCGAATCTTATCTCCCTGAAGTTG
CAATGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAACTA
CAATAGCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAAGATAAAGCTACAAATCCT
Found at i:22073893 original size:50 final size:48
Alignment explanation
Indices: 22073758--22074175 Score: 170
Period size: 50 Copynumber: 8.9 Consensus size: 48
22073748 AATAGCAAAC
* * * *
22073758 CTTATCTCCCTAAAGTTGCAGTGGAGCAAGGTAAAGCTAC-A---AAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAATGTAAT
** * * * * * * *
22073802 CCAATATCCCTGAAGATGCAGTGGATC-GGATCAAAGTTACAATGGTGAAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAAGAT-GAAGCTACAAT-GT-AAT
22073852 CTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTAC-A---AAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAATGTAAT
* * * * * * *
22073896 CCTATAC-CCCTGAAGTTGCAGTAGGTTG-GA-ATGAAACTATAATAGCAAAT
1 CTTAT-CTCCCTGAAGTTGTAGT-GG-AGCAAGATGAAGCTACAAT-G-TAAT
** *
22073946 CTTATCTCTATGAAGTTGTAGTGGAGCAAAATGAAGCTAC-A--T-AT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAATGTAAT
* *
22073990 CCTATAC-CCTTGAAGTTGTAGTGG-GTCGGAAGA--AAGCTACAATGGTAAAT
1 CTTAT-CTCCCTGAAGTTGTAGTGGAG-C--AAGATGAAGCTACAAT-GT-AAT
* * *
22074040 CTTATCTCTCTGAAGTTGCAATGGAGCAAGATGAAGCTAC-A---AAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAATGTAAT
* * * * * *
22074084 CCTATAC-CCCTGAAGTTGTAGTGG-GTC-GGAATAAAACTATAATGGAAAAT
1 CTTAT-CTCCCTGAAGTTGTAGTGGAG-CAAG-ATGAAGCTACAAT-G-TAAT
22074134 CTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAA
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAA
22074176 GTCCTATACC
Statistics
Matches: 273, Mismatches: 55, Indels: 86
0.66 0.13 0.21
Matches are distributed among these distances:
43 5 0.02
44 115 0.42
45 10 0.04
46 4 0.01
48 6 0.02
49 9 0.03
50 118 0.43
51 6 0.02
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (48 bp):
CTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAATGTAAT
Found at i:22073982 original size:282 final size:280
Alignment explanation
Indices: 22073476--22074200 Score: 819
Period size: 282 Copynumber: 2.6 Consensus size: 280
22073466 AAGGGCGAGT
* * * *
22073476 CTTATCTCTCTGAAGTTGTAGTGGAGCAAGACGAATCTACAAATTCTATATCCCTGAAGTTGCAG
1 CTTATCTCTCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTGAAGTTGCAG
* * * ** * * *
22073541 TGGAAT-GGATTGAAATTACAGTAGCAAAT-TCTATCTAACTGAAATTGTAGTGGAGCAAGGTAA
66 TGG-ATCGGA-T-AAATTACAATGGAAAATCT-TATCTCCCTGAAGTTGTAGTGGAGCAAGATGA
* ** * * * * * *
22073604 AGCTACAAATCCTATATCTTTGAAGATGCAGTGAATCGAATCAAAGTTTCAATGGCGAATTTTAT
127 AGCTACAAATCCTATACCCCTGAAGTTGCAGTGAATCGAATCAAACTATCAATAGCAAATCTTAT
* * *
22073669 CTCCCTGAAGTTGCAATGAAGCAAGATGAAGCTATAAATCATATACCCCTAAAGTTGTAGCGGGT
192 CTCCATGAAGTTGCAATGAAGCAAAATGAAGCTACAAATCATATACCCCTAAAGTTGTAGCGGGT
*
22073734 TGGAATGAAA-CTACAATAGCAAAC
257 CGGAA-GAAAGCTACAATAGCAAAC
* * * * * *
22073758 CTTATCTCCCTAAAGTTGCAGTGGAGCAAGGTAAAGCTACAAATCCAATATCCCTGAAGATGCAG
1 CTTATCTCTCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTGAAGTTGCAG
**
22073823 TGGATCGGATCAAAGTTACAATGGTGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAG
66 TGGATCGGAT-AAA-TTACAATGGAAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAG
** * *
22073888 CTACAAATCCTATACCCCTGAAGTTGCAGTAGGTTGGAATGAAACTAT-AATAGCAAATCTTATC
129 CTACAAATCCTATACCCCTGAAGTTGCAGT-GAATCGAATCAAACTATCAATAGCAAATCTTATC
* * * * * * * * *
22073952 TCTATGAAGTTGTAGTGGAGCAAAATGAAGCTACATATCCTATACCCTTGAAGTTGTAGTGGGTC
193 TCCATGAAGTTGCAATGAAGCAAAATGAAGCTACAAATCATATACCCCTAAAGTTGTAGCGGGTC
* * *
22074017 GGAAGAAAGCTACAATGGTAAAT
258 GGAAGAAAGCTACAATAGCAAAC
* * *
22074040 CTTATCTCTCTGAAGTTGCAATGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGTAG
1 CTTATCTCTCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTGAAGTTGCAG
* * *
22074105 TGGGTCGGAATAAAACTATAATGGAAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAG
66 TGGATCGG-AT-AAATTACAATGGAAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAG
* *
22074170 CTACAAGTCCTATACCCCTGAAGTTGTAGTG
129 CTACAAATCCTATACCCCTGAAGTTGCAGTG
22074201 GGTCAGAATA
Statistics
Matches: 371, Mismatches: 66, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
281 11 0.03
282 343 0.92
283 17 0.05
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (280 bp):
CTTATCTCTCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTGAAGTTGCAG
TGGATCGGATAAATTACAATGGAAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCT
ACAAATCCTATACCCCTGAAGTTGCAGTGAATCGAATCAAACTATCAATAGCAAATCTTATCTCC
ATGAAGTTGCAATGAAGCAAAATGAAGCTACAAATCATATACCCCTAAAGTTGTAGCGGGTCGGA
AGAAAGCTACAATAGCAAAC
Found at i:22074099 original size:44 final size:44
Alignment explanation
Indices: 22073859--22074201 Score: 186
Period size: 44 Copynumber: 7.4 Consensus size: 44
22073849 AATCTTATCT
22073859 CCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATAC
1 CCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATAC
* * *
22073903 CCCTGAAGTTGCAGTAGGTTGGAATGAAACTAT-AA--TAGCAAATCTTAT-C
1 CCCTGAAGTT---GTA-G-TGG-A-GCAA-GATGAAGCTA-CAAATCCTATAC
** * *
22073952 TCTATGAAGTTGTAGTGGAGCAAAATGAAGCTACATATCCTATAC
1 -CCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATAC
* *
22073997 CCTTGAAGTTGTAGTGG-GTCGGAAGA--AAGCTACAATGGTAAATCTTAT-C
1 CCCTGAAGTTGTAGTGGAG-C--AAGATGAAGCTAC------AAATCCTATAC
* * *
22074046 TCTCTGAAGTTGCAATGGAGCAAGATGAAGCTACAAATCCTATAC
1 -CCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATAC
* * * * *
22074091 CCCTGAAGTTGTAGTGG-GTC-GGAATAAAACTATAATGGAAAATCTTAT-C
1 CCCTGAAGTTGTAGTGGAG-CAAG-ATGAAGC--T-A---CAAATCCTATAC
*
22074140 TCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAGTCCTATAC
1 -CCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATAC
22074185 CCCTGAAGTTGTAGTGG
1 CCCTGAAGTTGTAGTGG
22074202 GTCAGAATAA
Statistics
Matches: 226, Mismatches: 33, Indels: 80
0.67 0.10 0.24
Matches are distributed among these distances:
42 2 0.01
43 8 0.04
44 94 0.42
45 8 0.04
46 5 0.02
47 8 0.04
48 6 0.03
49 8 0.04
50 77 0.34
51 8 0.04
52 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (44 bp):
CCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATAC
Found at i:22074219 original size:44 final size:44
Alignment explanation
Indices: 22074077--22074232 Score: 138
Period size: 44 Copynumber: 3.4 Consensus size: 44
22074067 AAGATGAAGC
*
22074077 TACAAATCCTATACCCCTGAAGTTGTAGTGGGTCGGAATAAAACT
1 TACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGAATAAAA-T
* * * **
22074122 ATAATGGAAAATCTTAT-CTCCCTGAAGTTGTAGTGGAG-CA-AGATGAAGC
1 -T-A---CAAATCCTATAC-CCCTGAAGTTGTAGTGG-GTCAGA-ATAAAAT
*
22074171 TACAAGTCCTATACCCCTGAAGTTGTAGTGGGTCAGAATAAAAT
1 TACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGAATAAAAT
*
22074215 TACAAATCCTATATCCCT
1 TACAAATCCTATACCCCT
22074233 AAAATTATAG
Statistics
Matches: 86, Mismatches: 14, Indels: 22
0.70 0.11 0.18
Matches are distributed among these distances:
43 1 0.01
44 46 0.53
45 2 0.02
46 1 0.01
47 2 0.02
48 1 0.01
49 2 0.02
50 30 0.35
51 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (44 bp):
TACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGAATAAAAT
Found at i:22077494 original size:2 final size:2
Alignment explanation
Indices: 22077487--22077516 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22077477 TAACTCAAAT
22077487 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22077517 ATAACATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22078790 original size:30 final size:30
Alignment explanation
Indices: 22078754--22078810 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
22078744 GGTGAGATGG
*
22078754 GAAGGGAATAAAAGTATTAGGGGAAAAGTT
1 GAAGGGAATAAAAATATTAGGGGAAAAGTT
* * *
22078784 GAAGGGAGTAAAAATTTTGGGGGAAAA
1 GAAGGGAATAAAAATATTAGGGGAAAA
22078811 TAAAAGGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.35, T:0.19
Consensus pattern (30 bp):
GAAGGGAATAAAAATATTAGGGGAAAAGTT
Found at i:22079901 original size:18 final size:17
Alignment explanation
Indices: 22079870--22079904 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
22079860 GATTTAGGGT
22079870 TTAAATTTTTTAATTAA
1 TTAAATTTTTTAATTAA
22079887 TTAAATTTATTTAATTAA
1 TTAAATTT-TTTAATTAA
22079905 AAATCAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTAAATTTTTTAATTAA
Found at i:22080194 original size:19 final size:19
Alignment explanation
Indices: 22080170--22080210 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
22080160 TATGATTTTA
22080170 AATTATTA-AAAATAATATT
1 AATTATTATAAAA-AATATT
*
22080189 AATTATTATAAAAATTATT
1 AATTATTATAAAAAATATT
22080208 AAT
1 AAT
22080211 AAAACTTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AATTATTATAAAAAATATT
Found at i:22102739 original size:18 final size:19
Alignment explanation
Indices: 22102716--22102751 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
22102706 CCCTCGTTTT
22102716 CTTTTCTTTTT-TTCTTTC
1 CTTTTCTTTTTCTTCTTTC
22102734 CTTTTCTTTTTCTTCTTT
1 CTTTTCTTTTTCTTCTTT
22102752 TCAATCTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (19 bp):
CTTTTCTTTTTCTTCTTTC
Found at i:22113441 original size:17 final size:18
Alignment explanation
Indices: 22113419--22113460 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
22113409 GTTTAGAAAT
22113419 TATTTTTATCA-T-ACTAA
1 TATTTTTAT-AGTAACTAA
22113436 TATTTTTTATAGTAACTAA
1 TA-TTTTTATAGTAACTAA
22113455 TATTTT
1 TATTTT
22113461 AAAAAATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.14
18 12 0.55
19 7 0.32
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.57
Consensus pattern (18 bp):
TATTTTTATAGTAACTAA
Found at i:22116591 original size:5 final size:5
Alignment explanation
Indices: 22116581--22116609 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
22116571 TCTTGTAAAT
22116581 ATTTG ATTTG ATTTG ATTTG ATTTG ATTT
1 ATTTG ATTTG ATTTG ATTTG ATTTG ATTT
22116610 AATGTAACGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.17, T:0.62
Consensus pattern (5 bp):
ATTTG
Found at i:22123148 original size:54 final size:55
Alignment explanation
Indices: 22123075--22123180 Score: 142
Period size: 54 Copynumber: 1.9 Consensus size: 55
22123065 AACAGGGGCA
* * * *
22123075 TGTGTCCAGACCATGTAACTCTTTGACTTCAGTCACACGAGCATGTGTCAGGCCG
1 TGTGTCCAGACCATATAACTCTCTGACTTCAGTCACACGACCATGTGCCAGGCCG
* **
22123130 TGTG-CCAGACCGTATAACTCTCTGACTTGGGTCACACGACCATGTGCCAGG
1 TGTGTCCAGACCATATAACTCTCTGACTTCAGTCACACGACCATGTGCCAGG
22123181 AAATGTGAGG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
54 40 0.91
55 4 0.09
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (55 bp):
TGTGTCCAGACCATATAACTCTCTGACTTCAGTCACACGACCATGTGCCAGGCCG
Found at i:22123783 original size:22 final size:22
Alignment explanation
Indices: 22123757--22123801 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
22123747 GGGGTTAAGA
* *
22123757 CTCTGAATCTGAATTTGATATG
1 CTCTGAATCTAAATCTGATATG
* *
22123779 CTCTGTATTTAAATCTGATATG
1 CTCTGAATCTAAATCTGATATG
22123801 C
1 C
22123802 ACTACATTCG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.42
Consensus pattern (22 bp):
CTCTGAATCTAAATCTGATATG
Found at i:22125919 original size:42 final size:42
Alignment explanation
Indices: 22125859--22125968 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
22125849 CATGACCAGG
* * * * * *
22125859 GACATGGACGTGTGCCCAAGCCGTGTGGGCCATATGGGCAAA
1 GACATGGGCGTGTTCCCAAGCTGTGTGAGCCATACGAGCAAA
** *
22125901 GACATGGGCGTGTTCCCAAGCTGCATGAGCCATACGAGCAAG
1 GACATGGGCGTGTTCCCAAGCTGTGTGAGCCATACGAGCAAA
22125943 GACATGGGCGTGTGT-CCAAGCTGTGT
1 GACATGGGCGTGT-TCCCAAGCTGTGT
22125969 AACTCACTAT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 55 0.98
43 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.35, T:0.19
Consensus pattern (42 bp):
GACATGGGCGTGTTCCCAAGCTGTGTGAGCCATACGAGCAAA
Found at i:22126017 original size:146 final size:146
Alignment explanation
Indices: 22125752--22126031 Score: 391
Period size: 146 Copynumber: 1.9 Consensus size: 146
22125742 CCACACGAAA
* ** * *
22125752 AAAGACATGGACGTGTGCCCAGGCCGTGTGAGCCACACGGGCAAGGACATGGGCCTGTGTCCAGG
1 AAAGACATGGACGTGTGCCCAAGCCGCATGAGCCACACGAGCAAGGACATGGGCCTGTGTCCAAG
* * *
22125817 CTGTATAACTCACTATTTATGATTTCAGACCACATGACCAGGGACATGGACGTGTGCCCAAGCCG
66 CTGTATAACTCACTATTTATGATTTAAGACCACACGACCAAGGACATGGACGTGTGCCCAAGCCG
22125882 TGTGGGCCATATGGGC
131 TGTGGGCCATATGGGC
* * * * *
22125898 AAAGACATGGGCGTGTTCCCAAGCTGCATGAGCCATACGAGCAAGGACATGGGCGTGTGTCCAAG
1 AAAGACATGGACGTGTGCCCAAGCCGCATGAGCCACACGAGCAAGGACATGGGCCTGTGTCCAAG
* * * *
22125963 CTGTGTAACTCACTATTTATGATTTAAGACCACACGACTAAGGACATAGG-CGTGTGCCCAGGTC
66 CTGTATAACTCACTATTTATGATTTAAGACCACACGACCAAGGACAT-GGACGTGTGCCCAAGCC
22126027 GTGTG
130 GTGTG
22126032 AACCACACAA
Statistics
Matches: 116, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
146 114 0.98
147 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.30, T:0.21
Consensus pattern (146 bp):
AAAGACATGGACGTGTGCCCAAGCCGCATGAGCCACACGAGCAAGGACATGGGCCTGTGTCCAAG
CTGTATAACTCACTATTTATGATTTAAGACCACACGACCAAGGACATGGACGTGTGCCCAAGCCG
TGTGGGCCATATGGGC
Found at i:22129819 original size:27 final size:27
Alignment explanation
Indices: 22129780--22130235 Score: 516
Period size: 27 Copynumber: 17.2 Consensus size: 27
22129770 AGAGGTCAAT
* *
22129780 AAATGATCGAAATACCCCCATAAGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
22129807 AAATGACCAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
22129834 AAATGACCGAAA-ACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
22129860 AAATTATCGAAATACCCCCATAGGATA
1 AAATGACCGAAATACCCCCATAGGGTA
*
22129887 AAATGATCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
22129914 AAATGACCAAAATACCCCCATAGAGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
22129941 AAATGACTGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
22129968 AAATGACCAAAATACCCCCATAAGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* ** * *
22129995 AAATAATTGAAATACTCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
**
22130022 AAATGACCGAAATATTCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * * * * *
22130049 AAATAATCAAAATACCTCCATAAGTTA
1 AAATGACCGAAATACCCCCATAGGGTA
22130076 AAATGACCGAAATA-----A-A--GTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
22130095 AAATGACTGAAATACCCCCATAGGATA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
22130122 AAATAACTGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
22130149 AAATAACCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
22130176 GAATAACCGAAATACCCCAATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
22130203 AAATGATCGAAACACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
22130230 AAATGA
1 AAATGA
22130236 TTGTTATACC
Statistics
Matches: 362, Mismatches: 58, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
19 15 0.04
21 1 0.00
22 1 0.00
24 1 0.00
25 1 0.00
26 23 0.06
27 320 0.88
ACGTcount: A:0.45, C:0.21, G:0.15, T:0.19
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCATAGGGTA
Found at i:22130143 original size:73 final size:73
Alignment explanation
Indices: 22130019--22130162 Score: 191
Period size: 73 Copynumber: 2.0 Consensus size: 73
22130009 CTCTCATAGG
** * * * *
22130019 GTAAAATGACCGAAATATTCCCATAGGGTAAAATAATCAAAATACCTCCATAAGTTAAAATGACC
1 GTAAAATGACCGAAATACCCCCATAGGATAAAATAATCAAAATACCCCCATAAGGTAAAATAACC
22130084 GAAATAAA
66 GAAATAAA
* * *
22130092 GTAAAATGACTGAAATACCCCCATAGGATAAAATAA-CTGAAATACCCCCATAGGGTAAAATAAC
1 GTAAAATGACCGAAATACCCCCATAGGATAAAATAATC-AAAATACCCCCATAAGGTAAAATAAC
22130156 CGAAATA
65 CGAAATA
22130163 CCCCCATAGG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
72 1 0.02
73 60 0.98
ACGTcount: A:0.49, C:0.18, G:0.13, T:0.20
Consensus pattern (73 bp):
GTAAAATGACCGAAATACCCCCATAGGATAAAATAATCAAAATACCCCCATAAGGTAAAATAACC
GAAATAAA
Found at i:22130160 original size:127 final size:127
Alignment explanation
Indices: 22129965--22130214 Score: 342
Period size: 127 Copynumber: 2.0 Consensus size: 127
22129955 CCCTCATAGG
* * * *
22129965 GTAAAATGACCAAAATACCCCCATAAGGTAAAATAATTGAAATACTCTCATAGGGTAAAATGACC
1 GTAAAATGACCAAAATACCCCCATAAGGTAAAATAACTGAAATACCCCCATAGGGTAAAATAACC
** * *
22130030 GAAATATTCCCATAGGGTAAAATAATCAAAATACCTCC-ATAAGTTAAAATGACCGAAATAAA
66 GAAATACCCCCATAGGGTAAAATAACCAAAATACC-CCAATAAGGTAAAATGACCGAAATAAA
**
22130092 GTAAAATGACTGAAATACCCCCAT-AGGATAAAATAACTGAAATACCCCCATAGGGTAAAATAAC
1 GTAAAATGACCAAAATACCCCCATAAGG-TAAAATAACTGAAATACCCCCATAGGGTAAAATAAC
* * * *
22130156 CGAAATACCCCCATAGGGTAGAATAACCGAAATACCCCAATAGGGTAAAATGATCGAAA
65 CGAAATACCCCCATAGGGTAAAATAACCAAAATACCCCAATAAGGTAAAATGACCGAAA
22130215 CACCCCCATA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
126 5 0.05
127 102 0.95
ACGTcount: A:0.47, C:0.19, G:0.14, T:0.20
Consensus pattern (127 bp):
GTAAAATGACCAAAATACCCCCATAAGGTAAAATAACTGAAATACCCCCATAGGGTAAAATAACC
GAAATACCCCCATAGGGTAAAATAACCAAAATACCCCAATAAGGTAAAATGACCGAAATAAA
Found at i:22130170 original size:100 final size:100
Alignment explanation
Indices: 22129987--22130189 Score: 253
Period size: 100 Copynumber: 2.0 Consensus size: 100
22129977 AAATACCCCC
* * * * * * **
22129987 ATAAGGTAAAATAATTGAAATACTCTCATAGGGTAAAATGACCGAAATATTCCCATAGGGTAAAA
1 ATAAAGTAAAATAACTGAAATACCCCCATAGGATAAAATAACCGAAATACCCCCATAGGGTAAAA
* * * *
22130052 TAATCAAAATACCTCCATAAGTTAAAATGACCGAA
66 TAACCAAAATACCCCCATAAGGTAAAATAACCGAA
* *
22130087 ATAAAGTAAAATGACTGAAATACCCCCATAGGATAAAATAACTGAAATACCCCCATAGGGTAAAA
1 ATAAAGTAAAATAACTGAAATACCCCCATAGGATAAAATAACCGAAATACCCCCATAGGGTAAAA
* * *
22130152 TAACCGAAATACCCCCATAGGGTAGAATAACCGAA
66 TAACCAAAATACCCCCATAAGGTAAAATAACCGAA
22130187 ATA
1 ATA
22130190 CCCCAATAGG
Statistics
Matches: 86, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
100 86 1.00
ACGTcount: A:0.47, C:0.18, G:0.14, T:0.21
Consensus pattern (100 bp):
ATAAAGTAAAATAACTGAAATACCCCCATAGGATAAAATAACCGAAATACCCCCATAGGGTAAAA
TAACCAAAATACCCCCATAAGGTAAAATAACCGAA
Found at i:22133694 original size:85 final size:86
Alignment explanation
Indices: 22133590--22133784 Score: 202
Period size: 85 Copynumber: 2.3 Consensus size: 86
22133580 ATACAATGCG
* * * ** *
22133590 ATATCCCATATATGGTCTTACATGTTATCACATATCGAT-CTCAATAG-CCCAG-CTATGGTCTT
1 ATATCCCAGACATGGTCTTACACGAAATCACATAACGATGC-CAAT-GTCCCAGAC-ATGGTCTT
* *
22133652 GCACG-AAT-CATATATCGATGCTA
63 ACACGTAATACATATACCGATG-TA
* *
22133675 ATGTCCCAGACATGGTCTTACACGAAATCACATAACGATGCCAATGTCCCAGACATGGTCTTACT
1 ATATCCCAGACATGGTCTTACACGAAATCACATAACGATGCCAATGTCCCAGACATGGTCTTACA
*
22133740 CGTAATCACATATACCGATGTC
66 CGTAAT-ACATATACCGATGTA
*
22133762 ATATCCCAGATATGGTCTTACAC
1 ATATCCCAGACATGGTCTTACAC
22133785 AAAGTCTCAT
Statistics
Matches: 91, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
84 1 0.01
85 52 0.57
86 5 0.05
87 22 0.24
88 11 0.12
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (86 bp):
ATATCCCAGACATGGTCTTACACGAAATCACATAACGATGCCAATGTCCCAGACATGGTCTTACA
CGTAATACATATACCGATGTA
Found at i:22133781 original size:44 final size:43
Alignment explanation
Indices: 22133590--22133835 Score: 205
Period size: 43 Copynumber: 5.7 Consensus size: 43
22133580 ATACAATGCG
* * ** *
22133590 ATATCCCATATATGGTCTTACATGTTATCACATAT-CGATCTC
1 ATATCCCAGATATGGTCTTACACGAAATCACATATACGATGTC
* * * * *
22133632 AATAGCCCAGCTATGGTCTTGCACG-AATCATATAT-CGATGCTA
1 -ATATCCCAGATATGGTCTTACACGAAATCACATATACGATG-TC
* * *
22133675 ATGTCCCAGACATGGTCTTACACGAAATCACATA-ACGATGCC
1 ATATCCCAGATATGGTCTTACACGAAATCACATATACGATGTC
* * * *
22133717 AATGTCCCAGACATGGTCTTACTCGTAATCACATATACCGATGTC
1 -ATATCCCAGATATGGTCTTACACGAAATCACATATA-CGATGTC
*
22133762 ATATCCCAGATATGGTCTTACAC-AAAGTCTCATATATCGATGTC
1 ATATCCCAGATATGGTCTTACACGAAA-TCACATATA-CGATGTC
* * * *
22133806 ATAGCCTAGCTATGGTCTTATACGAAATCA
1 ATATCCCAGATATGGTCTTACACGAAATCA
22133836 TGTAATGCCA
Statistics
Matches: 164, Mismatches: 31, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
42 31 0.19
43 67 0.41
44 57 0.35
45 9 0.05
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (43 bp):
ATATCCCAGATATGGTCTTACACGAAATCACATATACGATGTC
Found at i:22138996 original size:22 final size:22
Alignment explanation
Indices: 22138971--22139019 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
22138961 GGGGTTTGGA
** *
22138971 CTCTGAATCTGAATTTGATATG
1 CTCTGAATAAGAATCTGATATG
*
22138993 CTCTGGATAAGAATCTGATATG
1 CTCTGAATAAGAATCTGATATG
22139015 CTCTG
1 CTCTG
22139020 CATTTGTACC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (22 bp):
CTCTGAATAAGAATCTGATATG
Found at i:22145784 original size:45 final size:45
Alignment explanation
Indices: 22145690--22145808 Score: 125
Period size: 45 Copynumber: 2.6 Consensus size: 45
22145680 AGAAAATGAT
**** *
22145690 TAAGACCATAGTTGAAAGACACTATGGCACTATATTGGAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAACAAA
* * *
22145735 TAAGACCATGGTTGAAAGACACTATGGCACCT-TACCAAAAACGAG
1 TAAGACCATAGTTGAAAGACACTATGGCA-CTATACCAAAAACAAA
*
22145780 TAAGACCATAGTT-AAAGGACATTATGGCA
1 TAAGACCATAGTTGAAA-GACACTATGGCA
22145809 TCACAATTCT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 3 0.05
45 57 0.92
46 2 0.03
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAACAAA
Found at i:22145826 original size:45 final size:45
Alignment explanation
Indices: 22145777--22145874 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 45
22145767 TACCAAAAAC
* *
22145777 GAGTAAGACCATAGTTAA-AGGACATTATGGCATCACAATTCTAAT-
1 GAGTAAGAACATAGCTAAGA-GACATTATGGCATCACAATTCT-ATG
* * **
22145822 GAGTAAGAACATAGCTGAGAGACGTTATGGCATCATGATTCTATG
1 GAGTAAGAACATAGCTAAGAGACATTATGGCATCACAATTCTATG
22145867 GAGTAAGA
1 GAGTAAGA
22145875 TTATAGCAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 2 0.04
45 42 0.93
46 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (45 bp):
GAGTAAGAACATAGCTAAGAGACATTATGGCATCACAATTCTATG
Found at i:22145881 original size:45 final size:45
Alignment explanation
Indices: 22145801--22145918 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 45
22145791 TTAAAGGACA
* *
22145801 TTATGGCATCACAATTCTAATGAGTAAGAACATAGCTGAGAGACG
1 TTATGGCATCACAATTCTAATGAGTAAGAACATAGCAGAAAGACG
** **
22145846 TTATGGCATCATGATTCT-ATGGAGTAAGATTATAGCAGAAAGACG
1 TTATGGCATCACAATTCTAAT-GAGTAAGAACATAGCAGAAAGACG
* * * * *
22145891 CTATGACATCACAAGTCAAATGAATAAG
1 TTATGGCATCACAATTCTAATGAGTAAG
22145919 GCCATAGTTA
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
44 2 0.03
45 54 0.93
46 2 0.03
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.25
Consensus pattern (45 bp):
TTATGGCATCACAATTCTAATGAGTAAGAACATAGCAGAAAGACG
Found at i:22145959 original size:45 final size:46
Alignment explanation
Indices: 22145908--22146067 Score: 171
Period size: 46 Copynumber: 3.5 Consensus size: 46
22145898 ATCACAAGTC
* * *
22145908 AAATGAATAAGGCCATAGTT-AAAAACACTATGGCAATACGACGAA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACACGACGAA
* * * * *
22145953 AAATGAATAAGATCATAGTTGAAAGACACTATGACAACATGATGGA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACACGACGAA
* * * *
22145999 AAATGAATAAGACCATGGTTGAAAGACACTATGGCATCAAGTCG-A
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACACGACGAA
* * *
22146044 GAATAAATAAGACCATGGTTGAAA
1 AAATGAATAAGACCATAGTTGAAA
22146068 AACATCATGG
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
45 41 0.42
46 56 0.58
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (46 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACACGACGAA
Found at i:22148959 original size:6 final size:7
Alignment explanation
Indices: 22148942--22148967 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
22148932 AGATGAACTA
22148942 TTTTTTC
1 TTTTTTC
22148949 TTTTTTC
1 TTTTTTC
22148956 TTTTTTC
1 TTTTTTC
22148963 TTTTT
1 TTTTT
22148968 GCGTTGAGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:22152875 original size:35 final size:35
Alignment explanation
Indices: 22152824--22153027 Score: 182
Period size: 35 Copynumber: 5.9 Consensus size: 35
22152814 CATTTAATAT
* *
22152824 CGTCGGTTTATCCAACTAGCGCTGGGCGCAACTTC
1 CGTCAGTTTATCCGACTAGCGCTGGGCGCAACTTC
* * * *
22152859 CGTCAGTTTATCCAACTATCGCTAGGCGTAACTTC
1 CGTCAGTTTATCCGACTAGCGCTGGGCGCAACTTC
* * * *
22152894 TGTCAGTTTATCTGACTAGTGCTGGGCACATA-TT-
1 CGTCAGTTTATCCGACTAGCGCTGGGCGCA-ACTTC
* *
22152928 CGTCAATTTATCCGACTAGCGCTAGGCGCAACTTC
1 CGTCAGTTTATCCGACTAGCGCTGGGCGCAACTTC
* * * *
22152963 CATCAGTTTATCTGACTAGTGCTGGGCAC-ACATT-
1 CGTCAGTTTATCCGACTAGCGCTGGGCGCAAC-TTC
* * * *
22152997 CTTCGGTTTATCCGACTAGCGTTGGACGCAA
1 CGTCAGTTTATCCGACTAGCGCTGGGCGCAA
22153028 ACCCTTTTGC
Statistics
Matches: 133, Mismatches: 31, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
33 1 0.01
34 50 0.38
35 81 0.61
36 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.30
Consensus pattern (35 bp):
CGTCAGTTTATCCGACTAGCGCTGGGCGCAACTTC
Found at i:22152953 original size:69 final size:69
Alignment explanation
Indices: 22152859--22153017 Score: 237
Period size: 69 Copynumber: 2.3 Consensus size: 69
22152849 GCGCAACTTC
* * * **
22152859 CGTCAGTTTATCCAACTATCGCTAGGCGTAACTTCTGTCAGTTTATCTGACTAGTGCTGGGCACA
1 CGTCAGTTTATCCGACTAGCGCTAGGCGCAACTTCCATCAGTTTATCTGACTAGTGCTGGGCACA
*
22152924 TATT
66 CATT
*
22152928 CGTCAATTTATCCGACTAGCGCTAGGCGCAACTTCCATCAGTTTATCTGACTAGTGCTGGGCACA
1 CGTCAGTTTATCCGACTAGCGCTAGGCGCAACTTCCATCAGTTTATCTGACTAGTGCTGGGCACA
22152993 CATT
66 CATT
* *
22152997 CTTCGGTTTATCCGACTAGCG
1 CGTCAGTTTATCCGACTAGCG
22153018 TTGGACGCAA
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 80 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (69 bp):
CGTCAGTTTATCCGACTAGCGCTAGGCGCAACTTCCATCAGTTTATCTGACTAGTGCTGGGCACA
CATT
Found at i:22167856 original size:34 final size:34
Alignment explanation
Indices: 22167767--22167864 Score: 90
Period size: 35 Copynumber: 2.9 Consensus size: 34
22167757 GAAAATATTA
* * * *
22167767 AATGTGAGCCAAGCTCTAGTTGGATAAACCAACG
1 AATGTGTGCCTAGCACTAGTCGGATAAACCAACG
* * * *
22167801 -ATGTTTGCGCGTAGCATTAGTCGGATAAATCGACG
1 AATGTGTGC-C-TAGCACTAGTCGGATAAACCAACG
*
22167836 AATGTGTGCCTAGCACTAGTCAGATAAAC
1 AATGTGTGCCTAGCACTAGTCGGATAAAC
22167865 TGACGGAAGT
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
33 6 0.12
34 17 0.35
35 19 0.39
36 7 0.14
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.24
Consensus pattern (34 bp):
AATGTGTGCCTAGCACTAGTCGGATAAACCAACG
Found at i:22167924 original size:35 final size:35
Alignment explanation
Indices: 22167844--22167934 Score: 101
Period size: 35 Copynumber: 2.6 Consensus size: 35
22167834 CGAATGTGTG
* ** **
22167844 CCTAGCACTAGTCAGATAAACTGACGGAAGTTGTG
1 CCTAGCGCTAGTTGGATAAACTGACGGAAGTTGCA
* * * *
22167879 CCTGGTGCTAGTTGGATAAATTGATGGAAGTTGCA
1 CCTAGCGCTAGTTGGATAAACTGACGGAAGTTGCA
22167914 CCTAGCGCTAGTTGGATAAAC
1 CCTAGCGCTAGTTGGATAAAC
22167935 CGATGAATGT
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (35 bp):
CCTAGCGCTAGTTGGATAAACTGACGGAAGTTGCA
Found at i:22171070 original size:25 final size:25
Alignment explanation
Indices: 22170988--22171081 Score: 95
Period size: 25 Copynumber: 3.8 Consensus size: 25
22170978 CATGTACATA
*
22170988 TATGCTCAT-ACGAGCTGTAAATCGG
1 TATGCTC-TCACGAGCTATAAATCGG
* * *
22171013 TATGCTTACTCA--AGCTGTAGATTGG
1 TATGC-T-CTCACGAGCTATAAATCGG
22171038 TATGCTCTCACGAGCTATAAATCGG
1 TATGCTCTCACGAGCTATAAATCGG
*
22171063 TATGCTCTCACGAGTTATA
1 TATGCTCTCACGAGCTATA
22171082 GAGTATACAC
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
23 4 0.07
24 1 0.02
25 49 0.84
26 2 0.03
27 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (25 bp):
TATGCTCTCACGAGCTATAAATCGG
Found at i:22171240 original size:17 final size:17
Alignment explanation
Indices: 22171214--22171248 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
22171204 GCAATCATGT
22171214 AAATTAATAATAATTCA
1 AAATTAATAATAATTCA
*
22171231 AAATTCATAATAATTCA
1 AAATTAATAATAATTCA
22171248 A
1 A
22171249 TATAAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATTAATAATAATTCA
Found at i:22171833 original size:9 final size:9
Alignment explanation
Indices: 22171816--22171852 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
22171806 TGAGTTTTCG
22171816 AATTCGAAT
1 AATTCGAAT
*
22171825 AACTCGAAT
1 AATTCGAAT
22171834 AATTCGAAT
1 AATTCGAAT
22171843 AATTCGAAT
1 AATTCGAAT
22171852 A
1 A
22171853 TCATACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:22171959 original size:29 final size:29
Alignment explanation
Indices: 22171903--22171959 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
22171893 ACCTTTTTAC
* * ** *
22171903 TTTTCCCTCAGAACTTTTATTCCTTCCCA
1 TTTTCCCCCAAAACTTTTACCCCCTCCCA
22171932 TTTTCCCCCAAAACTTTTACCCCCTCCC
1 TTTTCCCCCAAAACTTTTACCCCCTCCC
22171960 CTCCCAACCC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.18, C:0.42, G:0.02, T:0.39
Consensus pattern (29 bp):
TTTTCCCCCAAAACTTTTACCCCCTCCCA
Found at i:22187758 original size:21 final size:21
Alignment explanation
Indices: 22187706--22187745 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
22187696 AACATTTGTT
22187706 TATCAACTCTTGCAACTGTGA
1 TATCAACTCTTGCAACTGTGA
22187727 TATCAACTCTTGCAACTGT
1 TATCAACTCTTGCAACTGT
22187746 TCTTTCAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (21 bp):
TATCAACTCTTGCAACTGTGA
Found at i:22190100 original size:25 final size:25
Alignment explanation
Indices: 22190059--22190150 Score: 96
Period size: 25 Copynumber: 3.7 Consensus size: 25
22190049 CCATTTTCAC
*
22190059 AGCTCGT-ATGAGCATACTAATTTAT
1 AGCTCGTGA-GAGTATACTAATTTAT
* *
22190084 AGCTTGTGAGAGTATACTGATTTAT
1 AGCTCGTGAGAGTATACTAATTTAT
* * * *
22190109 AGCTCATGAGAGCATACCAATTTAC
1 AGCTCGTGAGAGTATACTAATTTAT
*
22190134 AGCTCGTGTGAGTATAC
1 AGCTCGTGAGAGTATAC
22190151 ATGTACAAGA
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
25 53 0.98
26 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (25 bp):
AGCTCGTGAGAGTATACTAATTTAT
Found at i:22200697 original size:17 final size:17
Alignment explanation
Indices: 22200672--22200704 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22200662 TGTTAGTGCA
22200672 TATTATCATTGCATTTC
1 TATTATCATTGCATTTC
*
22200689 TATTGTCATTGCATTT
1 TATTATCATTGCATTT
22200705 TAATTTTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.15, G:0.09, T:0.55
Consensus pattern (17 bp):
TATTATCATTGCATTTC
Found at i:22206871 original size:27 final size:26
Alignment explanation
Indices: 22206841--22206915 Score: 82
Period size: 25 Copynumber: 2.9 Consensus size: 26
22206831 GAGTAGGCAC
*
22206841 ATTTTCATAGTTCGTGTGAGCATACCG
1 ATTTTCA-AGCTCGTGTGAGCATACCG
* * *
22206868 ATTTAC-AGCTCGTGAGTGCATACCG
1 ATTTTCAAGCTCGTGTGAGCATACCG
*
22206893 ATTTACAA-CTCGTGTGAGCATAC
1 ATTTTCAAGCTCGTGTGAGCATAC
22206916 ATGTACATGA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 35 0.85
26 1 0.02
27 5 0.12
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
ATTTTCAAGCTCGTGTGAGCATACCG
Found at i:22206888 original size:25 final size:25
Alignment explanation
Indices: 22206852--22206915 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
22206842 TTTTCATAGT
* *
22206852 TCGTGTGAGCATACCGATTTACAGC
1 TCGTGAGAGCATACCGATTTACAAC
*
22206877 TCGTGAGTGCATACCGATTTACAAC
1 TCGTGAGAGCATACCGATTTACAAC
*
22206902 TCGTGTGAGCATAC
1 TCGTGAGAGCATAC
22206916 ATGTACATGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
TCGTGAGAGCATACCGATTTACAAC
Found at i:22210103 original size:26 final size:26
Alignment explanation
Indices: 22210067--22210118 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22210057 GTTTAAACAA
*
22210067 AAGCGGATCCTCCCAAAGATAATACC
1 AAGCAGATCCTCCCAAAGATAATACC
22210093 AAGCAGATCCTCCCAAAGATAATACC
1 AAGCAGATCCTCCCAAAGATAATACC
22210119 GACTATCATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.31, G:0.13, T:0.15
Consensus pattern (26 bp):
AAGCAGATCCTCCCAAAGATAATACC
Found at i:22223117 original size:27 final size:27
Alignment explanation
Indices: 22223087--22223141 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
22223077 AAAAAACAAA
22223087 ACAAAG-GAAATAAAACTAAAGAAACCT
1 ACAAAGAGAAATAAAA-TAAAGAAACCT
* * *
22223114 ACAAAGAGAGATTAAATAATGAAACCT
1 ACAAAGAGAAATAAAATAAAGAAACCT
22223141 A
1 A
22223142 ACCTCAGTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.60, C:0.13, G:0.13, T:0.15
Consensus pattern (27 bp):
ACAAAGAGAAATAAAATAAAGAAACCT
Found at i:22223224 original size:13 final size:15
Alignment explanation
Indices: 22223191--22223229 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
22223181 GAAAGCCAAA
*
22223191 AAAGGAAGAAAAGTG
1 AAAGGAACAAAAGTG
22223206 AAAGGAACAAAA-T-
1 AAAGGAACAAAAGTG
22223219 AAAGGAACAAA
1 AAAGGAACAAA
22223230 CAGCTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 1 0.04
15 11 0.48
ACGTcount: A:0.67, C:0.05, G:0.23, T:0.05
Consensus pattern (15 bp):
AAAGGAACAAAAGTG
Found at i:22225062 original size:22 final size:23
Alignment explanation
Indices: 22225025--22225067 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
22225015 CTACGTTCAG
22225025 TCTGAGTACCAACTAAACTGTAGC
1 TCTGAGTACCAACTAAA-TGTAGC
22225049 TCTGA-TACC-ACTAAATGTA
1 TCTGAGTACCAACTAAATGTA
22225068 ACACCTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
22 6 0.32
23 4 0.21
24 5 0.26
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (23 bp):
TCTGAGTACCAACTAAATGTAGC
Found at i:22225338 original size:19 final size:19
Alignment explanation
Indices: 22225311--22225348 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
22225301 GGGGTGACAC
*
22225311 AGCCGTGTGACATAACCCA
1 AGCCATGTGACATAACCCA
*
22225330 AGCCATGTGACATAGCCCA
1 AGCCATGTGACATAACCCA
22225349 GGCCGTGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.32, G:0.21, T:0.16
Consensus pattern (19 bp):
AGCCATGTGACATAACCCA
Found at i:22228301 original size:577 final size:578
Alignment explanation
Indices: 22227197--22228351 Score: 2303
Period size: 577 Copynumber: 2.0 Consensus size: 578
22227187 AACTAAAAAA
22227197 TATAAAAATCATGAAAAACGAGTTGAAAAACACTTACCGTGCACTAAAACAAGCTTAACCGAACC
1 TATAAAAATCATGAAAAACGAGTTGAAAAACACTTACCGTGCACTAAAACAAGCTTAACCGAACC
22227262 AAGAGTTCAACAATGGTGTTCTTTTCCCCTTAAAATCGGTTAAAGATGAAAAATAAAAGATGATA
66 AAGAGTTCAACAATGGTGTTCTTTTCCCCTTAAAATCGGTTAAAGATGAAAAATAAAAGATGATA
22227327 CATGCTTTAATTTCTTTTGTTTTAAATTTAATTTCTAAATTTCCATTTTAACCTTATTATTAACC
131 CATGCTTTAATTTCTTTTGTTTTAAATTTAATTTCTAAATTTCCATTTTAACCTTATTATTAACC
22227392 AAAAATTTCATTAAAACCTATCCATAAACATCTACTAACTCTTTAATTGGTATATTTATCACTCA
196 AAAAATTTCATTAAAACCTATCCATAAACATCTACTAACTCTTTAATTGGTATATTTATCACTCA
22227457 AGTCCATTAAATTTAATTTTCATAGCTATTTGACCCCTTTAACTAATAAAACTTGACTTTTTCAC
261 AGTCCATTAAATTTAATTTTCATAGCTATTTGACCCCTTTAACTAATAAAACTTGACTTTTTCAC
22227522 CTTTTACATTTTAGTCCTTTTTACCTAATTAACCATTTAATCATCAAAATTTTTTAACAAAATTT
326 CTTTTACATTTTAGTCCTTTTTACCTAATTAACCATTTAATCATCAAAATTTTTTAACAAAATTT
22227587 TAATACAACCTTAGTATAATCTTGTAGAAATTAAATAAATATTAAAATACTAATTCACTTATCAA
391 TAATACAACCTTAGTATAATCTTGTAGAAATTAAATAAATATTAAAATACTAATTCACTTATCAA
22227652 AATCGTGGTCCCAAAACCACTATTTTCAACATCACTGAAAATGGGTTGTTATAGGGCTAGGATGC
456 AATCGTGGTCCCAAAACCACTATTTTCAACATCACTGAAAATGGGTTGTTATAGGGCTAGGATGC
22227717 ATGCTAATGCTAGAAAGGAAAGTGGTAACTTATGCTTCTAGGCAGATGAAGGTTCATG
521 ATGCTAATGCTAGAAAGGAAAGTGGTAACTTATGCTTCTAGGCAGATGAAGGTTCATG
22227775 TATAAAAATC-TGAAAAACGAGTTGAAAAACACTTACCGTGCACTAAAACAAGCTTAACCGAACC
1 TATAAAAATCATGAAAAACGAGTTGAAAAACACTTACCGTGCACTAAAACAAGCTTAACCGAACC
22227839 AAGAGTTCAACAATGGTGTTCTTTTCCCCTTAAAATCGGTTAAAGATGAAAAATAAAAGATGATA
66 AAGAGTTCAACAATGGTGTTCTTTTCCCCTTAAAATCGGTTAAAGATGAAAAATAAAAGATGATA
22227904 CATGCTTTAATTTCTTTTGTTTTAAATTTAATTTCTAAATTTCCATTTTAACCTTATTATTAACC
131 CATGCTTTAATTTCTTTTGTTTTAAATTTAATTTCTAAATTTCCATTTTAACCTTATTATTAACC
22227969 AAAAATTTCATTAAAACCTATCCATAAACATCTACTAACTCTTTAATTGGTATATTTATCACTCA
196 AAAAATTTCATTAAAACCTATCCATAAACATCTACTAACTCTTTAATTGGTATATTTATCACTCA
22228034 AGTCCATTAAATTTAATTTTCATAGCTATTTGACCCCTTTAACTAATAAAACTTGACTTTTTCAC
261 AGTCCATTAAATTTAATTTTCATAGCTATTTGACCCCTTTAACTAATAAAACTTGACTTTTTCAC
22228099 CTTTTACATTTTAGTCCTTTTTACCTAATTAACCATTTAATCATCAAAATTTTTTAACAAAATTT
326 CTTTTACATTTTAGTCCTTTTTACCTAATTAACCATTTAATCATCAAAATTTTTTAACAAAATTT
22228164 TAATACAACCTTAGTATAATCTTGTAGAAATTAAATAAATATTAAAATACTAATTCACTTATCAA
391 TAATACAACCTTAGTATAATCTTGTAGAAATTAAATAAATATTAAAATACTAATTCACTTATCAA
22228229 AATCGTGGTCCCAAAACCACTATTTTCAACATCACTGAAAATGGGTTGTTATAGGGCTAGGATGC
456 AATCGTGGTCCCAAAACCACTATTTTCAACATCACTGAAAATGGGTTGTTATAGGGCTAGGATGC
22228294 ATGCTAATGCTAGAAAGGAAAGTGGTAACTTATGCTTCTAGGCAGATGAAGGTTCATG
521 ATGCTAATGCTAGAAAGGAAAGTGGTAACTTATGCTTCTAGGCAGATGAAGGTTCATG
22228352 AGTGAAACTA
Statistics
Matches: 577, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
577 567 0.98
578 10 0.02
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (578 bp):
TATAAAAATCATGAAAAACGAGTTGAAAAACACTTACCGTGCACTAAAACAAGCTTAACCGAACC
AAGAGTTCAACAATGGTGTTCTTTTCCCCTTAAAATCGGTTAAAGATGAAAAATAAAAGATGATA
CATGCTTTAATTTCTTTTGTTTTAAATTTAATTTCTAAATTTCCATTTTAACCTTATTATTAACC
AAAAATTTCATTAAAACCTATCCATAAACATCTACTAACTCTTTAATTGGTATATTTATCACTCA
AGTCCATTAAATTTAATTTTCATAGCTATTTGACCCCTTTAACTAATAAAACTTGACTTTTTCAC
CTTTTACATTTTAGTCCTTTTTACCTAATTAACCATTTAATCATCAAAATTTTTTAACAAAATTT
TAATACAACCTTAGTATAATCTTGTAGAAATTAAATAAATATTAAAATACTAATTCACTTATCAA
AATCGTGGTCCCAAAACCACTATTTTCAACATCACTGAAAATGGGTTGTTATAGGGCTAGGATGC
ATGCTAATGCTAGAAAGGAAAGTGGTAACTTATGCTTCTAGGCAGATGAAGGTTCATG
Found at i:22230946 original size:25 final size:25
Alignment explanation
Indices: 22230911--22230978 Score: 111
Period size: 25 Copynumber: 2.7 Consensus size: 25
22230901 GGTGGGATCT
*
22230911 GTGAAATCAATTAAAACGGTGCGTG
1 GTGAAATCAATTGAAACGGTGCGTG
22230936 GTGGAAA-CAATTGAAACGGTGCGTG
1 GT-GAAATCAATTGAAACGGTGCGTG
22230961 GTGAAATCAATTGAAACG
1 GTGAAATCAATTGAAACG
22230979 AAATGGTCAG
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
24 4 0.10
25 32 0.80
26 4 0.10
ACGTcount: A:0.37, C:0.12, G:0.29, T:0.22
Consensus pattern (25 bp):
GTGAAATCAATTGAAACGGTGCGTG
Found at i:22231453 original size:52 final size:53
Alignment explanation
Indices: 22231351--22231455 Score: 140
Period size: 52 Copynumber: 2.0 Consensus size: 53
22231341 CAATTAAGAA
* * *
22231351 GTCTAACTTAATAACATGCATTGATACTGTTTGAACTAGAGCATAGTTAATAG
1 GTCTAACTTAATAACATGCATTGATACTGTCTGAACTAGAACATACTTAATAG
* * * *
22231404 GTCTGACTTAA-AACCTGCATTGATGCTGTCTGAATTAGAACATACTTAATAG
1 GTCTAACTTAATAACATGCATTGATACTGTCTGAACTAGAACATACTTAATAG
22231456 ACATAAATCA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 35 0.78
53 10 0.22
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (53 bp):
GTCTAACTTAATAACATGCATTGATACTGTCTGAACTAGAACATACTTAATAG
Found at i:22232090 original size:86 final size:86
Alignment explanation
Indices: 22231933--22232097 Score: 213
Period size: 86 Copynumber: 1.9 Consensus size: 86
22231923 CTTTAGCCCG
* * * *
22231933 CACATCTGAGGCACCAAGGTACCGATGCTACTCGAGGCACTCGTACATCCAACGTCCTAGGTTGC
1 CACATCTGAAGCACCAAGGTACCGATGCTACTCAAGGCACTCGCACATCCAACGTCCTAGGCTGC
* *
22231998 CGATGGTGTCCGAGGCTCCCC
66 CAATGGTGCCCGAGGCTCCCC
* * * * * *
22232019 CACATCTGAAGCACTAGGGTTCTGATGCTGCTCAAGGCACTCGCACATCCAACGTCTTAGGCTGC
1 CACATCTGAAGCACCAAGGTACCGATGCTACTCAAGGCACTCGCACATCCAACGTCCTAGGCTGC
*
22232084 TAATGGTGCCCGAG
66 CAATGGTGCCCGAG
22232098 TTTCCAGCAT
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
86 66 1.00
ACGTcount: A:0.22, C:0.32, G:0.25, T:0.21
Consensus pattern (86 bp):
CACATCTGAAGCACCAAGGTACCGATGCTACTCAAGGCACTCGCACATCCAACGTCCTAGGCTGC
CAATGGTGCCCGAGGCTCCCC
Found at i:22232271 original size:85 final size:83
Alignment explanation
Indices: 22232108--22232458 Score: 314
Period size: 85 Copynumber: 4.2 Consensus size: 83
22232098 TTTCCAGCAT
* * * * * * *
22232108 GACCAAGGGCTTAGGTTACCGACGGTGTCCTAGG-TCCCGTATATCCAAGCACCAAGGTACCGAT
1 GACCAAGGGCCTAGGTTATCGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGT-GCGAT
*
22232172 AGTGCCCGAA-GCTCCCGTAC
65 -GTGCCC-AAGGCTCCTGTAC
* *
22232192 GACCAAGGGCCTAGGTTATCGATGGTGTTCAAGGCTCCCGCACATCCAAGCACCAAGTTGTCGAT
1 GACCAAGGGCCTAGGTTATCGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTG-CGAT
* **
22232257 GCTACCCAAGGCTCCTACAC
65 G-TGCCCAAGGCTCCTGTAC
* *
22232277 GACCAAGGGCCTATGTT-GCTGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCTGA
1 GACCAAGGGCCTAGGTTATC-GATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGC-GA
* * *
22232341 TGGTGCTCGAGGCTTCTGTAC
64 T-GTGCCCAAGGCTCCTGTAC
* * * * * * * * *
22232362 CACCAATGTCCTAGGTTTTCGATGGTGTCCAAGGCTTCCACACATCAAAGCACCAAGGTTCAATG
1 GACCAAGGGCCTAGGTTATCGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCGAT-
** *
22232427 GTGCCCAATTCT-CTAGAAC
65 GTGCCCAAGGCTCCT-GTAC
22232446 GACCAAGGGCCTA
1 GACCAAGGGCCTA
22232459 TGGTGCCAGT
Statistics
Matches: 217, Mismatches: 41, Indels: 18
0.79 0.15 0.07
Matches are distributed among these distances:
83 2 0.01
84 58 0.27
85 155 0.71
86 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (83 bp):
GACCAAGGGCCTAGGTTATCGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCGATG
TGCCCAAGGCTCCTGTAC
Found at i:22232326 original size:43 final size:43
Alignment explanation
Indices: 22232194--22232326 Score: 128
Period size: 43 Copynumber: 3.1 Consensus size: 43
22232184 TCCCGTACGA
* * *
22232194 CCAAGGGCCTAGGTTATCGATGGTGTTCAAGGCTCCCGCACAT
1 CCAAGGGCCTAAGTTGTCGATGGTGTCCAAGGCTCCCGCACAT
** * ** **
22232237 CCAAGCACC-AAGTTGTCGATGCTACCCAAGGCTCCTACACGA-
1 CCAAGGGCCTAAGTTGTCGATGGTGTCCAAGGCTCCCGCAC-AT
*
22232279 CCAAGGGCCTATGTTG-CTGATGGTGTCCAAGGCTCCCGCACAT
1 CCAAGGGCCTAAGTTGTC-GATGGTGTCCAAGGCTCCCGCACAT
22232322 CCAAG
1 CCAAG
22232327 CACCAAGGTG
Statistics
Matches: 68, Mismatches: 18, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
42 32 0.47
43 36 0.53
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (43 bp):
CCAAGGGCCTAAGTTGTCGATGGTGTCCAAGGCTCCCGCACAT
Found at i:22232332 original size:170 final size:169
Alignment explanation
Indices: 22232108--22232418 Score: 406
Period size: 170 Copynumber: 1.8 Consensus size: 169
22232098 TTTCCAGCAT
* * * *
22232108 GACCAAGGGCTTAGGTTACCGACGGTGTCCTAGGTCCCGTATATCCAAGCACCAAGGTACCGATA
1 GACCAAGGGCCTAGGTTACCGACGGTGTCCAAGGTCCCGCACATCCAAGCACCAAGGTACCGATA
* * *
22232173 GTGCCCGAAGCTCCCGTACGACCAAGGGCCTAGGTTATCGATGGTGTTCAAGGCTCCCGCACATC
66 GTGCCCGAAGCTCCCGTACCACCAAGGGCCTAGGTTATCGATGGTGTCCAAGGCTCCCACACATC
*
22232238 CAAGCACCAAGTTGTCGATGCTACCCAAGGCTCCTACAC
131 AAAGCACCAAGTTGTCGATGCTACCCAAGGCTCCTACAC
* * * * * *
22232277 GACCAAGGGCCTATGTTGCTGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCTGAT
1 GACCAAGGGCCTAGGTTACCGACGGTGTCCAAGG-TCCCGCACATCCAAGCACCAAGGTACCGAT
* * * * * * * * *
22232342 GGTGCTCGAGGCTTCTGTACCACCAATGTCCTAGGTTTTCGATGGTGTCCAAGGCTTCCACACAT
65 AGTGCCCGAAGCTCCCGTACCACCAAGGGCCTAGGTTATCGATGGTGTCCAAGGCTCCCACACAT
22232407 CAAAGCACCAAG
130 CAAAGCACCAAG
22232419 GTTCAATGGT
Statistics
Matches: 118, Mismatches: 23, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
169 28 0.24
170 90 0.76
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (169 bp):
GACCAAGGGCCTAGGTTACCGACGGTGTCCAAGGTCCCGCACATCCAAGCACCAAGGTACCGATA
GTGCCCGAAGCTCCCGTACCACCAAGGGCCTAGGTTATCGATGGTGTCCAAGGCTCCCACACATC
AAAGCACCAAGTTGTCGATGCTACCCAAGGCTCCTACAC
Found at i:22232354 original size:42 final size:43
Alignment explanation
Indices: 22232150--22232354 Score: 118
Period size: 42 Copynumber: 4.8 Consensus size: 43
22232140 GGTCCCGTAT
* * * * *
22232150 ATCCAAGCACCAAGGTACCGATAGTGCCCGAA-GCTCCCGTACG
1 ATCCAAGCACCAAGGTGCTGATGGTGCTC-AAGGCTCCCGCACG
** * ** *
22232193 A-CCAAGGGCCTAGGTTATCGATGGTGTTCAAGGCTCCCGCAC-
1 ATCCAAGCACCAAGGTGCT-GATGGTGCTCAAGGCTCCCGCACG
* * * * **
22232235 ATCCAAGCACCAAGTTG-TCGATGCTACCCAAGGCTCCTACACG
1 ATCCAAGCACCAAGGTGCT-GATGGTGCTCAAGGCTCCCGCACG
** * *
22232278 A-CCAAGGGCCTATGTTGCTGATGGTG-TCCAAGGCTCCCGCAC-
1 ATCCAAGCACC-AAGGTGCTGATGGTGCT-CAAGGCTCCCGCACG
*
22232320 ATCCAAGCACCAAGGTGCTGATGGTGCTCGAGGCT
1 ATCCAAGCACCAAGGTGCTGATGGTGCTCAAGGCT
22232355 TCTGTACCAC
Statistics
Matches: 119, Mismatches: 34, Indels: 19
0.69 0.20 0.11
Matches are distributed among these distances:
42 60 0.50
43 58 0.49
44 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (43 bp):
ATCCAAGCACCAAGGTGCTGATGGTGCTCAAGGCTCCCGCACG
Found at i:22232421 original size:43 final size:42
Alignment explanation
Indices: 22232295--22232422 Score: 100
Period size: 42 Copynumber: 3.0 Consensus size: 42
22232285 GCCTATGTTG
* * * *
22232295 CTGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTG
1 CTGATGGTGTCCAAGGCTTCCACACATCAAAGCACCAAGGTT
* * * * * *
22232337 CTGATGGTG-CTCGAGGCTTCTGTAC-CACCAATG-TCCTAGGTT
1 CTGATGGTGTC-CAAGGCTTC--CACACATCAAAGCACCAAGGTT
*
22232379 TTCGATGGTGTCCAAGGCTTCCACACATCAAAGCACCAAGGTT
1 CT-GATGGTGTCCAAGGCTTCCACACATCAAAGCACCAAGGTT
22232422 C
1 C
22232423 AATGGTGCCC
Statistics
Matches: 61, Mismatches: 18, Indels: 13
0.66 0.20 0.14
Matches are distributed among these distances:
41 3 0.05
42 29 0.48
43 27 0.44
44 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (42 bp):
CTGATGGTGTCCAAGGCTTCCACACATCAAAGCACCAAGGTT
Found at i:22232505 original size:170 final size:169
Alignment explanation
Indices: 22232152--22232508 Score: 373
Period size: 170 Copynumber: 2.1 Consensus size: 169
22232142 TCCCGTATAT
* * * * * * * * * *
22232152 CCAAGCACCAAGGTACCGATAGTGCCCGAAGCTCCCGTACGACCAAGGGCCTAGGTTATCGATGG
1 CCAAGCACCAAGGTGCTGATGGTGCTCGAGGCTTCTGTACCACCAATGTCCTAGGTTATCGATGG
* * * * * *
22232217 TGTTCAAGGCTCCCGCACATCCAAGCACCAAGTTGTCGATGCTACCCAAGGCTCCTACACGACCA
66 TGTCCAAGGCTCCCACACATCAAAGCACCAAGGTGTCAATGCTACCCAAGGCTCCTAAACGACCA
* * * * *
22232282 AGGGCCTATGTTGCTGATGGTGTCCAAGGCTCCCGCACAT
131 AGGGCCTATGGTGCAGATGGAGT-CAAGGCTACCGCACAA
*
22232322 CCAAGCACCAAGGTGCTGATGGTGCTCGAGGCTTCTGTACCACCAATGTCCTAGGTTTTCGATGG
1 CCAAGCACCAAGGTGCTGATGGTGCTCGAGGCTTCTGTACCACCAATGTCCTAGGTTATCGATGG
* * * **
22232387 TGTCCAAGGCTTCCACACATCAAAGCACCAAGGT-TCAATGGTGCCCAATTCT-CTAGAACGACC
66 TGTCCAAGGCTCCCACACATCAAAGCACCAAGGTGTCAATGCTACCCAAGGCTCCTA-AACGACC
22232450 AAGGGCCTATGGTGCCAG-TGGAGT-AAGGGGCTACCGCACAA
130 AAGGGCCTATGGTG-CAGATGGAGTCAA--GGCTACCGCACAA
22232491 CCAAGGGC-CCAAGGTGCT
1 CCAA--GCACCAAGGTGCT
22232509 AGAGGCTCTT
Statistics
Matches: 154, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
167 2 0.01
168 3 0.02
169 52 0.34
170 95 0.62
171 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (169 bp):
CCAAGCACCAAGGTGCTGATGGTGCTCGAGGCTTCTGTACCACCAATGTCCTAGGTTATCGATGG
TGTCCAAGGCTCCCACACATCAAAGCACCAAGGTGTCAATGCTACCCAAGGCTCCTAAACGACCA
AGGGCCTATGGTGCAGATGGAGTCAAGGCTACCGCACAA
Found at i:22243687 original size:42 final size:42
Alignment explanation
Indices: 22243639--22243749 Score: 150
Period size: 42 Copynumber: 2.6 Consensus size: 42
22243629 TGCTCCAGGT
* * * *
22243639 TACCGATGGTGTCCGAGGCTCCCGTACATCTAAGCACCAAGG
1 TACCGATGCTGCCCGAGGCTCCCGCACATCCAAGCACCAAGG
22243681 TACCGATGCTGCCCGAGGCTCCCGCACATCCAAGCACCAAGG
1 TACCGATGCTGCCCGAGGCTCCCGCACATCCAAGCACCAAGG
** * *
22243723 TGTCGATGCTACTCGAGGCTCCCGCAC
1 TACCGATGCTGCCCGAGGCTCCCGCAC
22243750 GACCAAGGGC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.22, C:0.36, G:0.25, T:0.17
Consensus pattern (42 bp):
TACCGATGCTGCCCGAGGCTCCCGCACATCCAAGCACCAAGG
Found at i:22246277 original size:41 final size:41
Alignment explanation
Indices: 22246218--22246303 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
22246208 TGAATTACCT
* *
22246218 AAAAGTTTACAAGCAAACTAAAAGCATCCAAATAAGCATTC
1 AAAAGTTTACAAGAAAACTAAAAGCATCCAAATAAACATTC
22246259 AAAAGTTTACAAGAAAACTAAAAGCATCCAAATAAACATTC
1 AAAAGTTTACAAGAAAACTAAAAGCATCCAAATAAACATTC
22246300 AAAA
1 AAAA
22246304 AGAGCATTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.56, C:0.17, G:0.08, T:0.19
Consensus pattern (41 bp):
AAAAGTTTACAAGAAAACTAAAAGCATCCAAATAAACATTC
Found at i:22253786 original size:27 final size:27
Alignment explanation
Indices: 22253756--22253808 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
22253746 AAAGCAAAAT
22253756 AAAGCAGAAAAAAGAAACAAAA-AGAAC
1 AAAG-AGAAAAAAGAAACAAAAGAGAAC
* * *
22253783 AAAGGGAAAAAGGTAACAAAAGAGAA
1 AAAGAGAAAAAAGAAACAAAAGAGAA
22253809 AGAAACATGC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.70, C:0.08, G:0.21, T:0.02
Consensus pattern (27 bp):
AAAGAGAAAAAAGAAACAAAAGAGAAC
Found at i:22259313 original size:19 final size:20
Alignment explanation
Indices: 22259289--22259327 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
22259279 TTTGAATAAC
22259289 TTTTTGAAAA-ACATATTAA
1 TTTTTGAAAACACATATTAA
*
22259308 TTTTTGAAAACACATCTTAA
1 TTTTTGAAAACACATATTAA
22259328 ACAATTTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (20 bp):
TTTTTGAAAACACATATTAA
Found at i:22261087 original size:47 final size:45
Alignment explanation
Indices: 22260898--22261153 Score: 167
Period size: 45 Copynumber: 5.6 Consensus size: 45
22260888 GAAGGAAACA
* * * * * * *
22260898 AATAAGACCATAGTTGAAAGATACTATGGCA-CTATATCGAAACTA
1 AATAAGACCATGGTTGAAAGACACTATGGAATCAAGA-CGAAAATG
* * * * * * * *
22260943 AATAAGACTATAGTTGAGAGACAATATGGCATCATA-CCGGAAACG
1 AATAAGACCATGGTTGAAAGACACTATGGAATCA-AGACGAAAATG
* * * ** * * ***
22260988 AATAAGATCATAGCTGAAAGATGCTATGAAATCATGAATTAAATG
1 AATAAGACCATGGTTGAAAGACACTATGGAATCAAGACGAAAATG
* *
22261033 AATAAGACCATGGTTGAAAGACACTATGGAAAT-ATGATGTAAAAATG
1 AATAAGACCATGGTTGAAAGACACTATGG-AATCAAGACG--AAAATG
* * *
22261080 TATAAGACCATGGTTGAAAGACACTATGGCATCAAGACGAGAATG
1 AATAAGACCATGGTTGAAAGACACTATGGAATCAAGACGAAAATG
*
22261125 AATATGACCATGGTTGAAAGACACTATGG
1 AATAAGACCATGGTTGAAAGACACTATGG
22261154 CATCCTTCAA
Statistics
Matches: 163, Mismatches: 41, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
45 119 0.73
46 6 0.04
47 38 0.23
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.23
Consensus pattern (45 bp):
AATAAGACCATGGTTGAAAGACACTATGGAATCAAGACGAAAATG
Found at i:22261153 original size:45 final size:46
Alignment explanation
Indices: 22261028--22261157 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 46
22261018 ATCATGAATT
* * *
22261028 AAATGAATAAGACCATGGTTGAAAGACACTATGGAAAT-ATGATGTAA
1 AAATGAATAAGACCATGGTTGAAAGACACTATGG-CATCAAGACG-AA
*
22261075 AAATGTATAAGACCATGGTTGAAAGACACTATGGCATCAAGACG-A
1 AAATGAATAAGACCATGGTTGAAAGACACTATGGCATCAAGACGAA
* *
22261120 GAATGAATATGACCATGGTTGAAAGACACTATGGCATC
1 AAATGAATAAGACCATGGTTGAAAGACACTATGGCATC
22261158 CTTCAATCAT
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
45 36 0.48
46 2 0.03
47 37 0.49
ACGTcount: A:0.42, C:0.13, G:0.22, T:0.22
Consensus pattern (46 bp):
AAATGAATAAGACCATGGTTGAAAGACACTATGGCATCAAGACGAA
Found at i:22268301 original size:29 final size:26
Alignment explanation
Indices: 22268264--22268334 Score: 90
Period size: 29 Copynumber: 2.6 Consensus size: 26
22268254 AATTATAATA
22268264 ATTATCTCTTAAATTTTAAAATAATTATT
1 ATTA-CTCTTAAATTTT-AAA-AATTATT
22268293 ATTAGCTCTTAAAATTTTAAAAATTATT
1 ATTA-CTCTT-AAATTTTAAAAATTATT
22268321 ATTA-TCTTAAATTT
1 ATTACTCTTAAATTT
22268335 ACCATAAAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
25 6 0.15
26 4 0.10
28 11 0.28
29 12 0.30
30 7 0.17
ACGTcount: A:0.41, C:0.07, G:0.01, T:0.51
Consensus pattern (26 bp):
ATTACTCTTAAATTTTAAAAATTATT
Found at i:22268322 original size:31 final size:29
Alignment explanation
Indices: 22268253--22268325 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 29
22268243 ACAAAAAAGT
* * *
22268253 AAATTATAATAATTATCTCTTAAATTTTA
1 AAATTATTATTATTAGCTCTTAAATTTTA
*
22268282 AAATAATTATTATTAGCTCTTAAAATTTTAA
1 AAATTATTATTATTAGCTCTT-AAATTTT-A
22268313 AAATTATTATTAT
1 AAATTATTATTAT
22268326 CTTAAATTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 17 0.46
30 7 0.19
31 13 0.35
ACGTcount: A:0.45, C:0.05, G:0.01, T:0.48
Consensus pattern (29 bp):
AAATTATTATTATTAGCTCTTAAATTTTA
Found at i:22274520 original size:89 final size:89
Alignment explanation
Indices: 22274404--22274568 Score: 260
Period size: 89 Copynumber: 1.9 Consensus size: 89
22274394 TTCAGATATT
* * * * *
22274404 GATATATTAGTTATTCTAGAGCTTTCAACTAGTCTTGTACAACCAAATATTGCAATAATATTGGT
1 GATATATTAGTCATTCTAGAGCTTTCAACTAGTCTTGTACAACCAAATATCGCAATAACACTAGT
22274469 TTGTTTCAATACCACAATAGGTAC
66 TTGTTTCAATACCACAATAGGTAC
*
22274493 GATATATTAGCTCATT-TAGAGCTTTCAACTAGTTTTGTACAACCAAATATCGCAATAACACTAG
1 GATATATTAG-TCATTCTAGAGCTTTCAACTAGTCTTGTACAACCAAATATCGCAATAACACTAG
22274557 TTTGTTTCAATA
65 TTTGTTTCAATA
22274569 TTTCAACAGA
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
89 65 0.94
90 4 0.06
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (89 bp):
GATATATTAGTCATTCTAGAGCTTTCAACTAGTCTTGTACAACCAAATATCGCAATAACACTAGT
TTGTTTCAATACCACAATAGGTAC
Found at i:22279723 original size:12 final size:12
Alignment explanation
Indices: 22279698--22279729 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
22279688 ATAAATAAGC
22279698 ATGCCAAC-CAA
1 ATGCCAACTCAA
22279709 ATGCCAACTCAA
1 ATGCCAACTCAA
22279721 ATGCCAACT
1 ATGCCAACT
22279730 AAGCACTCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.41, C:0.34, G:0.09, T:0.16
Consensus pattern (12 bp):
ATGCCAACTCAA
Found at i:22280149 original size:14 final size:15
Alignment explanation
Indices: 22280130--22280162 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22280120 CATAATTTCG
22280130 TTAATTAA-ATAAAT
1 TTAATTAAGATAAAT
*
22280144 TTAATTAAGATTAAT
1 TTAATTAAGATAAAT
22280159 TTAA
1 TTAA
22280163 GTATATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (15 bp):
TTAATTAAGATAAAT
Found at i:22283995 original size:36 final size:35
Alignment explanation
Indices: 22283955--22284030 Score: 98
Period size: 35 Copynumber: 2.1 Consensus size: 35
22283945 AATCCCTCCA
*
22283955 AAACACACCAAATGCTCACAAGAGCTAGTCTAACCG
1 AAACACACC-AATGCTCACAAGAGCTAGTCCAACCG
** * *
22283991 AAACATGCCAATGCTCATAAGAGCTAGTCCAACGG
1 AAACACACCAATGCTCACAAGAGCTAGTCCAACCG
22284026 AAACA
1 AAACA
22284031 TGCCAAACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
35 28 0.80
36 7 0.20
ACGTcount: A:0.42, C:0.28, G:0.16, T:0.14
Consensus pattern (35 bp):
AAACACACCAATGCTCACAAGAGCTAGTCCAACCG
Found at i:22284004 original size:35 final size:35
Alignment explanation
Indices: 22283965--22284036 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
22283955 AAACACACCA
*
22283965 AATGCTCACAAGAGCTAGTCTAACCGAAACATGCC
1 AATGCTCACAAGAGCTAGTCCAACCGAAACATGCC
* *
22284000 AATGCTCATAAGAGCTAGTCCAACGGAAACATGCC
1 AATGCTCACAAGAGCTAGTCCAACCGAAACATGCC
22284035 AA
1 AA
22284037 ACAAAGAGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.26, G:0.18, T:0.17
Consensus pattern (35 bp):
AATGCTCACAAGAGCTAGTCCAACCGAAACATGCC
Found at i:22287025 original size:2 final size:2
Alignment explanation
Indices: 22287018--22287045 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22287008 ATTGAGTTAG
22287018 GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT
22287046 TTTATTTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:22290322 original size:15 final size:14
Alignment explanation
Indices: 22290276--22290328 Score: 61
Period size: 15 Copynumber: 3.6 Consensus size: 14
22290266 ACTTTTGATT
22290276 AAACTTAATTAATC
1 AAACTTAATTAATC
* *
22290290 AAAATTAATTAATT
1 AAACTTAATTAATC
*
22290304 AAACTTTAATTAACC
1 AAAC-TTAATTAATC
22290319 AAACCTTAAT
1 AAA-CTTAAT
22290329 CTTAATTAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
14 15 0.47
15 16 0.50
16 1 0.03
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (14 bp):
AAACTTAATTAATC
Found at i:22290551 original size:7 final size:7
Alignment explanation
Indices: 22290532--22290566 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
22290522 CAACTCCATA
22290532 AATATTT
1 AATATTT
22290539 -ATATTT
1 AATATTT
22290545 AATATTT
1 AATATTT
22290552 AATATTT
1 AATATTT
22290559 AATATTT
1 AATATTT
22290566 A
1 A
22290567 TAGACTCGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AATATTT
Found at i:22302128 original size:70 final size:70
Alignment explanation
Indices: 22302047--22302186 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
22302037 GATCTACCTT
22302047 GTAAAATAAAAATTATGAATTGGAGGGTAATAGCTATTTGCCTACCAAATATAATCTATACCAAA
1 GTAAAATAAAAATTATGAATTGGAGGGTAATAGCTATTTGCCTACCAAATATAATCTATACCAAA
22302112 AGAGG
66 AGAGG
22302117 GTAAAATAAAAATTATGAATTGGAGGGTAATAGCTATTTGCCTACCAAATATAATCTATACCAAA
1 GTAAAATAAAAATTATGAATTGGAGGGTAATAGCTATTTGCCTACCAAATATAATCTATACCAAA
22302182 AGAGG
66 AGAGG
22302187 TTAGTAGGAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.27
Consensus pattern (70 bp):
GTAAAATAAAAATTATGAATTGGAGGGTAATAGCTATTTGCCTACCAAATATAATCTATACCAAA
AGAGG
Found at i:22310882 original size:8 final size:8
Alignment explanation
Indices: 22310869--22310896 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
22310859 GTTACAATGA
22310869 AGTAGGTG
1 AGTAGGTG
22310877 AGTAGGTG
1 AGTAGGTG
22310885 AGTAGGTG
1 AGTAGGTG
22310893 AGTA
1 AGTA
22310897 ATCCAAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.46, T:0.25
Consensus pattern (8 bp):
AGTAGGTG
Found at i:22311899 original size:51 final size:51
Alignment explanation
Indices: 22311815--22311920 Score: 142
Period size: 51 Copynumber: 2.1 Consensus size: 51
22311805 ATAGGACCGA
*
22311815 TGTCGTGACATCGGAGGCAATATTGTCACACTCAAGGTAGCTTCAGGGGTG
1 TGTCGTGACATCAGAGGCAATATTGTCACACTCAAGGTAGCTTCAGGGGTG
* ** * *
22311866 TGTCGTGACATTAGAGGCAATA-TGCTCGTACTCAATGTAGCTTTAGGGGTG
1 TGTCGTGACATCAGAGGCAATATTG-TCACACTCAAGGTAGCTTCAGGGGTG
22311917 TGTC
1 TGTC
22311921 ACAACATCCT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
50 2 0.04
51 46 0.96
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (51 bp):
TGTCGTGACATCAGAGGCAATATTGTCACACTCAAGGTAGCTTCAGGGGTG
Found at i:22313838 original size:18 final size:18
Alignment explanation
Indices: 22313815--22313849 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22313805 CAATTTTTAT
22313815 ACTCAAGCTCGAACTTGA
1 ACTCAAGCTCGAACTTGA
*
22313833 ACTCAAGCTCGAGCTTG
1 ACTCAAGCTCGAACTTG
22313850 GCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (18 bp):
ACTCAAGCTCGAACTTGA
Found at i:22314148 original size:19 final size:19
Alignment explanation
Indices: 22314110--22314150 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
22314100 TAAAAGTCCT
*
22314110 AAAAATTTTAAAAATGTAA
1 AAAAATTTAAAAAATGTAA
22314129 AAAAATTATAAAAAAT-TAA
1 AAAAATT-TAAAAAATGTAA
22314148 AAA
1 AAA
22314151 TGTAAATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAATTTAAAAAATGTAA
Found at i:22317985 original size:18 final size:18
Alignment explanation
Indices: 22317962--22317996 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22317952 CAAGAATAGT
22317962 AAGCATCAAAATAGTTTC
1 AAGCATCAAAATAGTTTC
*
22317980 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
22317997 GGCACATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:22318899 original size:19 final size:19
Alignment explanation
Indices: 22318877--22318917 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
22318867 AGAAAAGCAT
22318877 AAAAAGTTAAAACAAATTG
1 AAAAAGTTAAAACAAATTG
22318896 AAAAAGTTAAAACAAATTG
1 AAAAAGTTAAAACAAATTG
22318915 AAA
1 AAA
22318918 TAAATTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.66, C:0.05, G:0.10, T:0.20
Consensus pattern (19 bp):
AAAAAGTTAAAACAAATTG
Found at i:22327458 original size:29 final size:29
Alignment explanation
Indices: 22327421--22327476 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
22327411 TTCCACACGG
* *
22327421 CCTAGCCACACAGCCGTGTGGCGCACAGA
1 CCTAACCACACAGCCATGTGGCGCACAGA
*
22327450 CCTAACCACACAGCCATGTGGCTCACA
1 CCTAACCACACAGCCATGTGGCGCACA
22327477 TGGCCTAGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.27, C:0.39, G:0.21, T:0.12
Consensus pattern (29 bp):
CCTAACCACACAGCCATGTGGCGCACAGA
Found at i:22327488 original size:29 final size:28
Alignment explanation
Indices: 22327414--22327495 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 28
22327404 TTGGTGATTC
*
22327414 CACACGGCCTAGCCACACAGCCGTGTGGCG
1 CACA-GGCCTAG-CACACAGCCATGTGGCG
* * *
22327444 CACAGACCTAACCACACAGCCATGTGGCT
1 CACAGGCCT-AGCACACAGCCATGTGGCG
*
22327473 CACATGGCCTAGCACATAGCCAT
1 CACA-GGCCTAGCACACAGCCAT
22327496 ATATTTTTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
29 34 0.79
30 9 0.21
ACGTcount: A:0.27, C:0.38, G:0.22, T:0.13
Consensus pattern (28 bp):
CACAGGCCTAGCACACAGCCATGTGGCG
Found at i:22327588 original size:6 final size:6
Alignment explanation
Indices: 22327579--22327608 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
22327569 GTTTTATATT
22327579 TTTTTG TTTTTG TTTTTG TTTTTGG TTTTT
1 TTTTTG TTTTTG TTTTTG TTTTT-G TTTTT
22327609 TTATTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (6 bp):
TTTTTG
Found at i:22330612 original size:6 final size:6
Alignment explanation
Indices: 22330598--22330631 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
22330588 TTCTACATTG
* *
22330598 GTTGTT GTTGCT GTTGCT GTTGCT GTTGTT GTTG
1 GTTGCT GTTGCT GTTGCT GTTGCT GTTGCT GTTG
22330632 ATGGTTCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.09, G:0.35, T:0.56
Consensus pattern (6 bp):
GTTGCT
Found at i:22330618 original size:12 final size:12
Alignment explanation
Indices: 22330598--22330631 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
22330588 TTCTACATTG
22330598 GTTGTTGTTGCT
1 GTTGTTGTTGCT
*
22330610 GTTGCTGTTGCT
1 GTTGTTGTTGCT
22330622 GTTGTTGTTG
1 GTTGTTGTTG
22330632 ATGGTTCCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.09, G:0.35, T:0.56
Consensus pattern (12 bp):
GTTGTTGTTGCT
Found at i:22340536 original size:27 final size:27
Alignment explanation
Indices: 22340477--22341232 Score: 762
Period size: 27 Copynumber: 28.4 Consensus size: 27
22340467 CCCTAAAAAA
* *
22340477 GGTAAAATGACCAAAATA-CCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
**
22340503 GGTAAAATGACCGAAATACCTGCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* **
22340530 GATAAAATGACCGAAATACCGTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
22340557 GGTAAAATGACCG-AATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
22340583 GGTAAAATGACCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
22340610 GGTAAAATGACTGAAATACCCCAATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*** *
22340637 GGTAAAATGACC-AAATTACCTGAATAA
1 GGTAAAATGACCGAAA-TACCCCCATAG
* *
22340664 GGTAGAATGACCGAAATACCGCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* ** *
22340691 GGTAAAATCACCGAAATA-CCCGGTAC
1 GGTAAAATGACCGAAATACCCCCATAG
*
22340717 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
22340744 GGTAGAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
22340771 GGTAACATGACCGAAATACTCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
22340798 GGTAAAATGACTGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
22340825 GGTAAAATGACTGAAATACCCCTATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
22340852 GATAAAATAACTGAAATACCCCCATGG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * * *
22340879 GGTAGAATGATCGAAATAACCCTATAA
1 GGTAAAATGACCGAAATACCCCCATAG
*
22340906 GGTAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
22340933 GGTAAAATGATCGAAATATCCTCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
** *
22340960 GGTAAAATGA-TTATTATA---CC----
1 GGTAAAATGACCGA-AATACCCCCATAG
22340980 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
22341007 GATAGAATGGCCGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
22341034 GGTAGAATGACCGGAATACTCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
22341061 GATAAAATGACCGAAATGCCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* ** *
22341088 GATAAAATGACTAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
22341115 GGTATAATAACCGAAATACACCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
22341142 GATAAAATGACCGAAATACCTCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
22341169 GGTAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
22341196 GGTAAAATGATCGAAATATCCTCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
22341223 GGTAAAATGA
1 GGTAAAATGA
22341233 TTATTATACC
Statistics
Matches: 599, Mismatches: 117, Indels: 27
0.81 0.16 0.04
Matches are distributed among these distances:
20 13 0.02
21 1 0.00
23 2 0.00
24 1 0.00
26 65 0.11
27 514 0.86
28 3 0.01
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAG
Found at i:22344397 original size:70 final size:70
Alignment explanation
Indices: 22344284--22344423 Score: 208
Period size: 70 Copynumber: 2.0 Consensus size: 70
22344274 CTAATACAAA
* ** * **
22344284 GTTTACAATAACAAGTGAGTTTAAATAAGCTAATAGTAATAATAAAATAATTACAACCTGGCTTA
1 GTTTACAAGAACAAGTGAGCATAAATAAGCTAAAAACAATAATAAAATAATTACAACCTGGCTTA
22344349 ATCTT
66 ATCTT
* *
22344354 GTTTACAAGAACAAGTTAGCATAAATAAGCTAAAAACAATAATAAAATAATTACAACTTGGCTTA
1 GTTTACAAGAACAAGTGAGCATAAATAAGCTAAAAACAATAATAAAATAATTACAACCTGGCTTA
22344419 ATCTT
66 ATCTT
22344424 ACAACTTGAT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.31
Consensus pattern (70 bp):
GTTTACAAGAACAAGTGAGCATAAATAAGCTAAAAACAATAATAAAATAATTACAACCTGGCTTA
ATCTT
Found at i:22344636 original size:17 final size:17
Alignment explanation
Indices: 22344614--22344650 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
22344604 CGTCACAAGT
*
22344614 TTGGTGAGCTTGCAGTC
1 TTGGTGAGCTCGCAGTC
*
22344631 TTGGTGAGCTCGTAGTC
1 TTGGTGAGCTCGCAGTC
22344648 TTG
1 TTG
22344651 ATGAACTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.16, G:0.35, T:0.38
Consensus pattern (17 bp):
TTGGTGAGCTCGCAGTC
Found at i:22349044 original size:17 final size:17
Alignment explanation
Indices: 22348999--22349048 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
22348989 AGTGCGTCAC
*
22348999 AGATTTGGTGAACTCGT
1 AGATTTGGTGAGCTCGT
**
22349016 AG-TCTTCATGAGCTCGT
1 AGAT-TTGGTGAGCTCGT
22349033 AGATTTGGTGAGCTCG
1 AGATTTGGTGAGCTCG
22349049 CAGACTTGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
16 1 0.04
17 24 0.92
18 1 0.04
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (17 bp):
AGATTTGGTGAGCTCGT
Found at i:22350333 original size:26 final size:26
Alignment explanation
Indices: 22350291--22350349 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 26
22350281 ACTTATGAAC
22350291 TTTTTAATATTTGTTTAATTTTAAAA
1 TTTTTAATATTTGTTTAATTTTAAAA
*
22350317 TTTTTGAATATTT-TTTAATTTTCAAA
1 TTTTT-AATATTTGTTTAATTTTAAAA
22350343 TTATTTA
1 TT-TTTA
22350350 CTGACGTTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (26 bp):
TTTTTAATATTTGTTTAATTTTAAAA
Found at i:22350545 original size:2 final size:2
Alignment explanation
Indices: 22350538--22350566 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22350528 TATCAAATTA
22350538 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22350567 AACATTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22350623 original size:23 final size:22
Alignment explanation
Indices: 22350597--22350654 Score: 75
Period size: 23 Copynumber: 2.7 Consensus size: 22
22350587 CCATTATACC
22350597 AAAACAATAATAATGAGAAAAGA
1 AAAACAATAATAATGA-AAAAGA
*
22350620 AAAACAATAATAA-CAAAAAGA
1 AAAACAATAATAATGAAAAAGA
*
22350641 AAAA-AAAAATAATG
1 AAAACAATAATAATG
22350655 GGAGGATCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 7 0.23
21 10 0.32
22 1 0.03
23 13 0.42
ACGTcount: A:0.74, C:0.05, G:0.09, T:0.12
Consensus pattern (22 bp):
AAAACAATAATAATGAAAAAGA
Found at i:22351239 original size:13 final size:13
Alignment explanation
Indices: 22351221--22351247 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22351211 TTTTCATTTT
22351221 TATTATTAAATTA
1 TATTATTAAATTA
22351234 TATTATTAAATTA
1 TATTATTAAATTA
22351247 T
1 T
22351248 GTAATTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTATTAAATTA
Found at i:22352403 original size:13 final size:14
Alignment explanation
Indices: 22352376--22352404 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22352366 AAAGATTTGA
22352376 TTATTAAATTATTC
1 TTATTAAATTATTC
22352390 TTATTAAA-TATTC
1 TTATTAAATTATTC
22352403 TT
1 TT
22352405 GTAATTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTAAATTATTC
Found at i:22355518 original size:21 final size:21
Alignment explanation
Indices: 22355432--22355544 Score: 131
Period size: 21 Copynumber: 5.4 Consensus size: 21
22355422 ACACGCCAAA
*
22355432 AGAAGCTCGTAAGAGCTAAAC
1 AGAAGCTCGTAAGAGCTGAAC
*
22355453 AGGAA-CTTGTAAGAGCTGAAC
1 A-GAAGCTCGTAAGAGCTGAAC
* * *
22355474 AGGAGCTTGTAAGAGTTGAAC
1 AGAAGCTCGTAAGAGCTGAAC
*
22355495 AGAAGCTCGTAAGAGCTTAAC
1 AGAAGCTCGTAAGAGCTGAAC
*
22355516 AGAAGCTC-AATAGAGCTGAAC
1 AGAAGCTCGTA-AGAGCTGAAC
22355537 AGAAGCTC
1 AGAAGCTC
22355545 AAAAGAGTTG
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
20 3 0.04
21 73 0.92
22 3 0.04
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.18
Consensus pattern (21 bp):
AGAAGCTCGTAAGAGCTGAAC
Found at i:22355545 original size:21 final size:21
Alignment explanation
Indices: 22355485--22355551 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
22355475 GGAGCTTGTA
* *
22355485 AGAGTTGAACAGAAGCTC-GT
1 AGAGCTGAACAGAAGCTCAAT
*
22355505 AAGAGCTTAACAGAAGCTCAAT
1 -AGAGCTGAACAGAAGCTCAAT
*
22355527 AGAGCTGAACAGAAGCTCAAA
1 AGAGCTGAACAGAAGCTCAAT
22355548 AGAG
1 AGAG
22355552 TTGATCCACC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 39 0.98
22 1 0.03
ACGTcount: A:0.43, C:0.16, G:0.25, T:0.15
Consensus pattern (21 bp):
AGAGCTGAACAGAAGCTCAAT
Found at i:22355551 original size:63 final size:63
Alignment explanation
Indices: 22355432--22355555 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
22355422 ACACGCCAAA
** * ***
22355432 AGAAGCTCGTAAGAGCTAAACAGGAACTTGTAAGAGCTGAACAGGAGCTTGTAAGAGTTGAAC
1 AGAAGCTCGTAAGAGCTAAACAGGAACTAATAAGAGCTGAACAGAAGCTCAAAAGAGTTGAAC
*
22355495 AGAAGCTCGTAAGAGCTTAACA-GAAGCTCAAT-AGAGCTGAACAGAAGCTCAAAAGAGTTGA
1 AGAAGCTCGTAAGAGCTAAACAGGAA-CT-AATAAGAGCTGAACAGAAGCTCAAAAGAGTTGA
22355556 TCCACCCGAA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 3 0.06
63 48 0.92
64 1 0.02
ACGTcount: A:0.40, C:0.15, G:0.27, T:0.18
Consensus pattern (63 bp):
AGAAGCTCGTAAGAGCTAAACAGGAACTAATAAGAGCTGAACAGAAGCTCAAAAGAGTTGAAC
Found at i:22363283 original size:31 final size:31
Alignment explanation
Indices: 22363246--22363306 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
22363236 TTGGTCATTG
*
22363246 AACTATTCAAAAGTTTTCT-TTTAAGTCACTA
1 AACTATTCAAAAGTTTT-TATTTAAGCCACTA
22363277 AACTATTCAAAAGTTTTTATTTAAGCCACT
1 AACTATTCAAAAGTTTTTATTTAAGCCACT
22363307 GGGTTGTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 1 0.04
31 27 0.96
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.41
Consensus pattern (31 bp):
AACTATTCAAAAGTTTTTATTTAAGCCACTA
Found at i:22384983 original size:50 final size:50
Alignment explanation
Indices: 22384929--22385082 Score: 155
Period size: 50 Copynumber: 3.1 Consensus size: 50
22384919 GTGATGTCGA
* * * *
22384929 GGAAGCAAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTACACCGCCTG
1 GGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCAACGCCTG
* * * ** * * *
22384979 GGAAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAACTGCAATGTCGG
1 GGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCAACGCCTG
* * * *
22385029 GGAAGCAAGATTCACTGATGTGGCTTTAATCTGTTCCACTGCATCGCCTAG
1 GGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCAACGCCT-G
22385080 GGA
1 GGA
22385083 GTAAGAATTG
Statistics
Matches: 79, Mismatches: 24, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
50 75 0.95
51 4 0.05
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (50 bp):
GGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCAACGCCTG
Found at i:22385026 original size:100 final size:100
Alignment explanation
Indices: 22384896--22385097 Score: 273
Period size: 100 Copynumber: 2.0 Consensus size: 100
22384886 GATTTGTAAC
** ** *
22384896 TTGTAGCTTTAATCTGTTTAACTGTGATGTCGAGGAAGCAAGATTCGTTGTTGTAGCTTCAATCT
1 TTGTAGCTTTAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCACTGATGTAGCTTCAATCT
22384961 GTTCCACTACACCGCCT-GGGAAGTAAG-ATTCGCTA
66 GTTCCACTACACCGCCTAGGG-AGTAAGAATT-GCTA
* * * *
22384996 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACTGATGTGGCTTTAATCT
1 TTGTAGCTTTAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCACTGATGTAGCTTCAATCT
* *
22385061 GTTCCACTGCATCGCCTAGGGAGTAAGAATTGCTA
66 GTTCCACTACACCGCCTAGGGAGTAAGAATTGCTA
22385096 TT
1 TT
22385098 CTCAGTCTAC
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
100 83 0.93
101 6 0.07
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (100 bp):
TTGTAGCTTTAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCACTGATGTAGCTTCAATCT
GTTCCACTACACCGCCTAGGGAGTAAGAATTGCTA
Found at i:22385294 original size:132 final size:132
Alignment explanation
Indices: 22385143--22385663 Score: 803
Period size: 132 Copynumber: 3.9 Consensus size: 132
22385133 ACTTGTAATT
* * * *
22385143 TTCAACCTACTACACTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATA
1 TTCAACTTACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
* *
22385208 TTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTACAA
66 TTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
22385273 TC
131 TC
* ** *
22385275 TTCAACTTACTCTGCTGCTGCTCAAAGAGACAAGGTTCGATGGCTTAAATCTGCTTCCCACTATC
1 TTCAACTTACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
* *
22385340 TTGGAAAGATAATATTTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
66 TTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
22385405 TC
131 TC
* * * *
22385407 TTCAACCTACTCCACCGCTACTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
1 TTCAACTTACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
22385472 TTGGAAAGAT-AGTATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACA
66 TTGGAAAGATAAG-ATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACA
22385536 ATC
130 ATC
* * *
22385539 TTCTAA-TCAACTCCGCTGCTGCTCAGGGAGACAAGATTCGGTGGTTTAAATCTGCTTCCCACTA
1 TTC-AACT-TACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTA
* * *
22385603 TCTTGGAAAGATAAGATTTGCCGTCTTTGATTTGCTCCACTACTTCTTAGGTAGATAAGAT
64 TCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
22385664 TTGCTATCTT
Statistics
Matches: 353, Mismatches: 32, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
131 1 0.00
132 243 0.69
133 107 0.30
134 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
TTCAACTTACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
TTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
TC
Found at i:22398514 original size:145 final size:148
Alignment explanation
Indices: 22398307--22398608 Score: 504
Period size: 145 Copynumber: 2.1 Consensus size: 148
22398297 GAGGAAAACT
* *
22398307 AAATTT-ATATTAAATTAAAATTGATTTCAAATCGAAAAAGACCAAACCAGTAATTAAGCACAAA
1 AAATTTAAAATTAAATTAAAATTGATTTCAAATCGAAAAAGACCAAACCAGCAATTAAGCACAAA
22398371 TATTGAGATAATCCAAATCAAATCAAAGAAACGACACTGTTTAAGCTGGGATCTAAATGAATACA
66 TATTGAGATAATCCAAATCAAATCAAAGAAACGACACTGTTTAAGCTGGGATCTAAATGAATACA
22398436 GAACCAAATGTGTGGTAC
131 GAACCAAATGTGTGGTAC
* * * *
22398454 AAA-TTAAAATTAAATT-AAATTTATTTCAAATCG-GAAGGACCAAACCAGCAATTGAGCACAAA
1 AAATTTAAAATTAAATTAAAATTGATTTCAAATCGAAAAAGACCAAACCAGCAATTAAGCACAAA
*
22398516 TATTGAGATAATCCAAATCAAATCACAGAAACGACACTGTTTAAGCTGGGATCTAAATGAATACA
66 TATTGAGATAATCCAAATCAAATCAAAGAAACGACACTGTTTAAGCTGGGATCTAAATGAATACA
*
22398581 GAACTAAATGTGTGGTAC
131 GAACCAAATGTGTGGTAC
22398599 AAATTTAAAA
1 AAATTTAAAA
22398609 AAAAAAGCAC
Statistics
Matches: 145, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
145 109 0.75
146 24 0.17
147 12 0.08
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.25
Consensus pattern (148 bp):
AAATTTAAAATTAAATTAAAATTGATTTCAAATCGAAAAAGACCAAACCAGCAATTAAGCACAAA
TATTGAGATAATCCAAATCAAATCAAAGAAACGACACTGTTTAAGCTGGGATCTAAATGAATACA
GAACCAAATGTGTGGTAC
Found at i:22402976 original size:29 final size:30
Alignment explanation
Indices: 22402930--22402991 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
22402920 ACTTGTTTTA
*
22402930 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTAATTTAGAGGCAT
22402960 TTGTTAA-TTTGTTATTAATTTAGAGGCAT
1 TTGTTAATTTTGTTATTAATTTAGAGGCAT
22402989 TTG
1 TTG
22402992 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 24 0.77
30 7 0.23
ACGTcount: A:0.24, C:0.03, G:0.18, T:0.55
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTAATTTAGAGGCAT
Found at i:22404199 original size:19 final size:18
Alignment explanation
Indices: 22404176--22404215 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
22404166 CATCTCTCTT
*
22404176 CTTTAAATACATCTTTTC
1 CTTTTAATACATCTTTTC
* *
22404194 CTTTTAGTACCTCTTTTC
1 CTTTTAATACATCTTTTC
22404212 CTTT
1 CTTT
22404216 CATAAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.25, G:0.03, T:0.55
Consensus pattern (18 bp):
CTTTTAATACATCTTTTC
Found at i:22405325 original size:19 final size:18
Alignment explanation
Indices: 22405302--22405341 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
22405292 CATCTCTCTT
*
22405302 CTTTAAATACATCTTTTC
1 CTTTTAATACATCTTTTC
* *
22405320 CTTTTAGTACCTCTTTTC
1 CTTTTAATACATCTTTTC
22405338 CTTT
1 CTTT
22405342 CATAAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.25, G:0.03, T:0.55
Consensus pattern (18 bp):
CTTTTAATACATCTTTTC
Done.