Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 68 of 79
Found at i:22407561 original size:5 final size:5
Alignment explanation
Indices: 22407546--22407609 Score: 56
Period size: 5 Copynumber: 12.8 Consensus size: 5
22407536 CATACCAGAA
* * * * * * *
22407546 CATAT CTTAT CATAT CACAA CGTAT CATAT TATAT CATAC CATAT CAGAT
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT
*
22407596 CAGAT CATAT CATA
1 CATAT CATAT CATA
22407610 ACATGTCCTA
Statistics
Matches: 45, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.34
Consensus pattern (5 bp):
CATAT
Found at i:22411141 original size:33 final size:34
Alignment explanation
Indices: 22411083--22411171 Score: 90
Period size: 34 Copynumber: 2.6 Consensus size: 34
22411073 TTTTGATATG
*
22411083 ATATGACATTTTGATATGATATATG-TTCTGGAA
1 ATATGACATTCTGATATGATATATGTTTCTGGAA
* * * *
22411116 ATATGATATTCTGATTTGATGTATGTTTCTGGTA
1 ATATGACATTCTGATATGATATATGTTTCTGGAA
* * * *
22411150 TTGTGTCATTCTGATCTGATAT
1 ATATGACATTCTGATATGATAT
22411172 TTGTATGTAT
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
33 21 0.48
34 23 0.52
ACGTcount: A:0.26, C:0.08, G:0.19, T:0.47
Consensus pattern (34 bp):
ATATGACATTCTGATATGATATATGTTTCTGGAA
Found at i:22415351 original size:11 final size:11
Alignment explanation
Indices: 22415335--22415359 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22415325 GCGATTATTG
22415335 TATTTATTGTA
1 TATTTATTGTA
22415346 TATTTATTGTA
1 TATTTATTGTA
22415357 TAT
1 TAT
22415360 AAATGGACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (11 bp):
TATTTATTGTA
Found at i:22418688 original size:85 final size:86
Alignment explanation
Indices: 22418543--22418723 Score: 346
Period size: 85 Copynumber: 2.1 Consensus size: 86
22418533 ATGATATAGA
22418543 ATATAATATAAATGTAATGAAATTACTGATAGAAGTTCTATATCTCTATACAAAAGTTGGATATA
1 ATATAATATAAA-GTAATGAAATTACTGATAGAAGTTCTATATCTCTATACAAAAGTTGGATATA
22418608 TCTATATAATCAATCTATATCT
65 TCTATATAATCAATCTATATCT
22418630 ATATAATATAAA-TAATGAAATTACTGATAGAAGTTCTATATCTCTATACAAAAGTTGGATATAT
1 ATATAATATAAAGTAATGAAATTACTGATAGAAGTTCTATATCTCTATACAAAAGTTGGATATAT
22418694 CTATATAATCAATCTATATCT
66 CTATATAATCAATCTATATCT
22418715 ATATAATAT
1 ATATAATAT
22418724 TAAAATTTAG
Statistics
Matches: 94, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
85 82 0.87
87 12 0.13
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (86 bp):
ATATAATATAAAGTAATGAAATTACTGATAGAAGTTCTATATCTCTATACAAAAGTTGGATATAT
CTATATAATCAATCTATATCT
Found at i:22418798 original size:23 final size:19
Alignment explanation
Indices: 22418751--22418809 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
22418741 ATATCTATGG
22418751 ATTAATAATACTCTATATA
1 ATTAATAATACTCTATATA
22418770 ATTAATAATACTCTATATA
1 ATTAATAATACTCTATATA
* *
22418789 GATAAATAATAATCTATATA
1 -ATTAATAATACTCTATATA
22418809 A
1 A
22418810 CATAATCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 20 0.54
20 17 0.46
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (19 bp):
ATTAATAATACTCTATATA
Found at i:22418816 original size:14 final size:14
Alignment explanation
Indices: 22418797--22418825 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22418787 TAGATAAATA
22418797 ATAATCTATATAAC
1 ATAATCTATATAAC
22418811 ATAATCTATATAAC
1 ATAATCTATATAAC
22418825 A
1 A
22418826 AAGTCAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:22420104 original size:652 final size:657
Alignment explanation
Indices: 22418840--22420152 Score: 2422
Period size: 652 Copynumber: 2.0 Consensus size: 657
22418830 CAAAAAGGGC
22418840 TTTTTTCAAGCCTTTCTTTTTGCGTGCTGTAACATAGTAATTATCTTTTCTCAATTAGGAGAGAT
1 TTTTTTCAAGCCTTTCTTTTTGCGTGCTGTAACATAGTAATTATCTTTTCTCAATTAGGAGAGAT
22418905 GGCTGAGTGGACTAAAGCGTCGGATTGCTAATCCGTTGTGCGAGTTATTCATACCGAGGGTTCGA
66 GGCTGAGTGGACTAAAGCGTCGGATTGCTAATCCGTTGTGCGAGTTATTCATACCGAGGGTTCGA
22418970 ATCCCTCTCTTTTCGTTTCAGCTTTTGGTAGTGGAATAGATCAAATCCTAATACCATTTCTAAAA
131 ATCCCTCTCTTTTCGTTTCAGCTTTTGGTAGTGGAATAGATCAAATCCTAATACCATTTCTAAAA
*
22419035 ATGAAGCAAGGAACTCTCCCTTTTTTATTCTTCGCGTCCAGGATTACGTCCCGGATCATTAGATA
196 ATGAAGCAAGGAACTCTCCCTTTTTTA-T-TTC-CGT-CAGGATTACGTCCCGAATCATTAGATA
* *
22419100 GAAATCCGAAGATGAAGAGAGAAACAAAGAATATTACTACGGTGTAAACAAAGAGTTTAAGAGTA
257 GAAATCCAAAGATGAAGAGAGAAACAAAGAATATTACTACAGTGTAAACAAAGAGTTTAAGAGTA
*
22419165 AGCATTACACAATCTCCAAGAGCATTTTTTTGGAAAAAGAAGAGAATAGATTCCCCGTTTTTATA
322 AGCATTACACAATCTCCAAGAGCATTTTTTTGGAAAAAGAAGAGAATAGATTCCCCGTTTCTATA
22419230 CCACATATCCTATTTTGTTTTGATTTTGACACCAAGAAATAAAGTGATTTCTAGAATTTCTAGAA
387 CCACATATCCTATTTTGTTTTGATTTTGACACCAAGAAATAAAGTGATTTCTAGAATTTCTAGAA
*
22419295 ATCGAAAAGAATTTTCAGAAATTCACTTGTAATAAGAGTTGAGTTTTTCATTACAAAAAAAATTC
452 ATCAAAAAGAATTTTCAGAAATTCACTTGTAATAAGAGTTGAGTTTTTCATTACAAAAAAAATTC
22419360 TTTCATACCAACAATTATATATTGTGGCGGACTCTAATCTAAATAGGGTTCTTCGGCGAAAAGGG
517 TTTCATACCAACAATTATATATTGTGGCGGACTCTAATCTAAATAGGGTTCTTCGGCGAAAAGGG
* *
22419425 TCAGAATGAGGAAATGGGATGATCCAGATTTATCAGGGCTATCCAAGAATTTGAATCTTTGAATT
582 TCAGAATGAGGAAATGGGATGATCCAGATTTATCAGGGCTATACAAGAATTTCAATCTTTGAATT
22419490 GAGGGTTCGTT
647 GAGGGTTCGTT
*
22419501 TTTTATTCAAGTCTTTCTTTTTGCGTGCTGTAACATAGTAATTATCTTTTCTCAATTAGGAGAGA
1 TTTT-TTCAAGCCTTTCTTTTTGCGTGCTGTAACATAGTAATTATCTTTTCTCAATTAGGAGAGA
22419566 TGGCTGAGTGGACTAAAGCGTCGGATTGCTAATCCGTTGTGCGAGTTATTCATACCGAGGGTTCG
65 TGGCTGAGTGGACTAAAGCGTCGGATTGCTAATCCGTTGTGCGAGTTATTCATACCGAGGGTTCG
22419631 AATCCCTCTCTTTTCGTTTCAGCTTTTGGTAGTGGAATAGATCAAATCCTAATACCATTTCTAAA
130 AATCCCTCTCTTTTCGTTTCAGCTTTTGGTAGTGGAATAGATCAAATCCTAATACCATTTCTAAA
* *
22419696 AATGAAGCAAGGAACTCTCCCTTTTTTA-TT-C-T-A-GATTACGTTCCGAATCATTAGATAGGA
195 AATGAAGCAAGGAACTCTCCCTTTTTTATTTCCGTCAGGATTACGTCCCGAATCATTAGATAGAA
*
22419756 ATCCAAAGATGAAGAGAGAAACAAAGAATATTACTACAGTGTAAACAAAGAGTTTAAGAGTACGC
260 ATCCAAAGATGAAGAGAGAAACAAAGAATATTACTACAGTGTAAACAAAGAGTTTAAGAGTAAGC
22419821 ATTACACAATCTCCAAGAGCA-TTTTTTGGAAAAAGAAGAGAATAGATTCCCCGTTTCTATACCA
325 ATTACACAATCTCCAAGAGCATTTTTTTGGAAAAAGAAGAGAATAGATTCCCCGTTTCTATACCA
* *
22419885 TATATCCTATTTTGTTTTTATTTTGACACCAAGAAATAAAGTGATTTCTAGAATTTCTAGAAATC
390 CATATCCTATTTTGTTTTGATTTTGACACCAAGAAATAAAGTGATTTCTAGAATTTCTAGAAATC
22419950 AAAAAGAATTTTCAGAAATTCACTTGTAATAAGAGTTGAGTTTTTCATTACAAAAAAAATTCTTT
455 AAAAAGAATTTTCAGAAATTCACTTGTAATAAGAGTTGAGTTTTTCATTACAAAAAAAATTCTTT
22420015 CATACCAACAATTATATATTGTGGCGGACTCTAATCTAAATAGGGTTCTTCGGCGAAAAGGGTCA
520 CATACCAACAATTATATATTGTGGCGGACTCTAATCTAAATAGGGTTCTTCGGCGAAAAGGGTCA
22420080 GAATGAGGAAATGGGATGATCCAGATTTATCAGGGCTATACAAGAATTTCAATCTTTGAATTGAG
585 GAATGAGGAAATGGGATGATCCAGATTTATCAGGGCTATACAAGAATTTCAATCTTTGAATTGAG
22420145 GGTTCGTT
650 GGTTCGTT
22420153 CATAGTGTAA
Statistics
Matches: 638, Mismatches: 13, Indels: 11
0.96 0.02 0.02
Matches are distributed among these distances:
652 305 0.48
653 107 0.17
654 1 0.00
656 1 0.00
657 1 0.00
659 2 0.00
661 4 0.01
662 217 0.34
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (657 bp):
TTTTTTCAAGCCTTTCTTTTTGCGTGCTGTAACATAGTAATTATCTTTTCTCAATTAGGAGAGAT
GGCTGAGTGGACTAAAGCGTCGGATTGCTAATCCGTTGTGCGAGTTATTCATACCGAGGGTTCGA
ATCCCTCTCTTTTCGTTTCAGCTTTTGGTAGTGGAATAGATCAAATCCTAATACCATTTCTAAAA
ATGAAGCAAGGAACTCTCCCTTTTTTATTTCCGTCAGGATTACGTCCCGAATCATTAGATAGAAA
TCCAAAGATGAAGAGAGAAACAAAGAATATTACTACAGTGTAAACAAAGAGTTTAAGAGTAAGCA
TTACACAATCTCCAAGAGCATTTTTTTGGAAAAAGAAGAGAATAGATTCCCCGTTTCTATACCAC
ATATCCTATTTTGTTTTGATTTTGACACCAAGAAATAAAGTGATTTCTAGAATTTCTAGAAATCA
AAAAGAATTTTCAGAAATTCACTTGTAATAAGAGTTGAGTTTTTCATTACAAAAAAAATTCTTTC
ATACCAACAATTATATATTGTGGCGGACTCTAATCTAAATAGGGTTCTTCGGCGAAAAGGGTCAG
AATGAGGAAATGGGATGATCCAGATTTATCAGGGCTATACAAGAATTTCAATCTTTGAATTGAGG
GTTCGTT
Found at i:22421122 original size:18 final size:18
Alignment explanation
Indices: 22421101--22421135 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22421091 TTATTTATAA
*
22421101 TATTCGTGATATTATTAG
1 TATTCGTAATATTATTAG
*
22421119 TATTTGTAATATTATTA
1 TATTCGTAATATTATTA
22421136 TTAATGATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.03, G:0.11, T:0.54
Consensus pattern (18 bp):
TATTCGTAATATTATTAG
Found at i:22422614 original size:27 final size:27
Alignment explanation
Indices: 22422579--22422657 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
22422569 CAAGGTCACA
*
22422579 ATCAATAGCGTCACTATCATCAATAGC
1 ATCAATAGCATCACTATCATCAATAGC
* * * *
22422606 GTCACTAGCATCAATATCATCATTAGC
1 ATCAATAGCATCACTATCATCAATAGC
*
22422633 ATCAATATCATCACTATCATCAATA
1 ATCAATAGCATCACTATCATCAATA
22422658 TCGATATCAT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (27 bp):
ATCAATAGCATCACTATCATCAATAGC
Found at i:22422626 original size:9 final size:9
Alignment explanation
Indices: 22422579--22422659 Score: 72
Period size: 9 Copynumber: 9.0 Consensus size: 9
22422569 CAAGGTCACA
*
22422579 ATCAATAGC
1 ATCAATATC
* *
22422588 GTCACTATC
1 ATCAATATC
*
22422597 ATCAATAGC
1 ATCAATATC
* * *
22422606 GTCACTAGC
1 ATCAATATC
22422615 ATCAATATC
1 ATCAATATC
* *
22422624 ATCATTAGC
1 ATCAATATC
22422633 ATCAATATC
1 ATCAATATC
*
22422642 ATCACTATC
1 ATCAATATC
22422651 ATCAATATC
1 ATCAATATC
22422660 GATATCATCT
Statistics
Matches: 55, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
9 55 1.00
ACGTcount: A:0.37, C:0.26, G:0.07, T:0.30
Consensus pattern (9 bp):
ATCAATATC
Found at i:22422658 original size:18 final size:18
Alignment explanation
Indices: 22422579--22422659 Score: 99
Period size: 18 Copynumber: 4.5 Consensus size: 18
22422569 CAAGGTCACA
* * *
22422579 ATCAATAGCGTCACTATC
1 ATCAATATCATCACTAGC
* *
22422597 ATCAATAGCGTCACTAGC
1 ATCAATATCATCACTAGC
*
22422615 ATCAATATCATCATTAGC
1 ATCAATATCATCACTAGC
*
22422633 ATCAATATCATCACTATC
1 ATCAATATCATCACTAGC
22422651 ATCAATATC
1 ATCAATATC
22422660 GATATCATCT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.37, C:0.26, G:0.07, T:0.30
Consensus pattern (18 bp):
ATCAATATCATCACTAGC
Found at i:22426834 original size:18 final size:19
Alignment explanation
Indices: 22426802--22426841 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
22426792 TTCATGCTAG
* *
22426802 AAATCCCAAATTAAAATCC
1 AAATCCCAAAATAAAACCC
22426821 AAAT-CCAAAATAAAACCC
1 AAATCCCAAAATAAAACCC
22426839 AAA
1 AAA
22426842 AGTTCAGAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.60, C:0.25, G:0.00, T:0.15
Consensus pattern (19 bp):
AAATCCCAAAATAAAACCC
Found at i:22437677 original size:35 final size:35
Alignment explanation
Indices: 22437638--22437709 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
22437628 CTAGCAGTAG
22437638 AAAAGTTTTACACTCATACGAAGGGTGTGTTTGAT
1 AAAAGTTTTACACTCATACGAAGGGTGTGTTTGAT
22437673 AAAAGTTTTACACTCATACGAAGGGTGTGTTTGAT
1 AAAAGTTTTACACTCATACGAAGGGTGTGTTTGAT
22437708 AA
1 AA
22437710 TGCTTAATGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (35 bp):
AAAAGTTTTACACTCATACGAAGGGTGTGTTTGAT
Found at i:22441458 original size:31 final size:31
Alignment explanation
Indices: 22441417--22441549 Score: 109
Period size: 31 Copynumber: 4.4 Consensus size: 31
22441407 TTAATATAAT
*
22441417 ATTTGATACTTGAAA-TTGACATTTTTTCCTA
1 ATTTGGTACTT-AAACTTGACATTTTTTCCTA
22441448 ATTTGGTACTTAAACTT----TTTTTGTCC-A
1 ATTTGGTACTTAAACTTGACATTTTT-TCCTA
* * *
22441475 ATTTCGTA-TCCAAACTTGACACTTTTTCCTA
1 ATTTGGTACT-TAAACTTGACATTTTTTCCTA
* * *
22441506 ATTTGGTACCTAACCTTGACATTTTTTCTTA
1 ATTTGGTACTTAAACTTGACATTTTTTCCTA
* *
22441537 AGTTGATACTTAA
1 ATTTGGTACTTAA
22441550 TCTTTTTTGG
Statistics
Matches: 80, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
26 1 0.01
27 19 0.24
28 3 0.04
30 6 0.08
31 51 0.64
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (31 bp):
ATTTGGTACTTAAACTTGACATTTTTTCCTA
Found at i:22441576 original size:60 final size:60
Alignment explanation
Indices: 22441505--22441617 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 60
22441495 ACTTTTTCCT
* * *
22441505 AATTTGGTACCT-AACCTTGACAT-TTTTTCTTAAGTTGATACTTAATCTTTTTTGGGGTCC
1 AATTTGATACCTGAA-CTTGAC-TCTTTTTCTTAAGTTGACACGTAATCTTTTTTGGGGTCC
* *
22441565 AATTTGATACCTGAACTTGACTCTTTTTCTTAATTTGGCACGTAATCTTTTTT
1 AATTTGATACCTGAACTTGACTCTTTTTCTTAAGTTGACACGTAATCTTTTTT
22441618 TGTTCGGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 1 0.02
60 43 0.93
61 2 0.04
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (60 bp):
AATTTGATACCTGAACTTGACTCTTTTTCTTAAGTTGACACGTAATCTTTTTTGGGGTCC
Found at i:22441599 original size:91 final size:89
Alignment explanation
Indices: 22441432--22441602 Score: 220
Period size: 89 Copynumber: 1.9 Consensus size: 89
22441422 ATACTTGAAA
* * *
22441432 TTGACATTTTTTCCTAATTTGGTACTTAAACTTTTTTTGTCCAATTTCGTATCCAAACTTGACAC
1 TTGACATTTTTTCCTAAGTTGATACTTAAACTTTTTTGGTCCAATTTCGTATCCAAACTTGACAC
22441497 TTTTTCCTAATTTGGTACCTAACC
66 TTTTTCCTAATTTGGTACCTAACC
* * *
22441521 TTGACATTTTTTCTTAAGTTGATACTTAATCTTTTTTGGGGTCCAATTT-G-ATACCTGAACTTG
1 TTGACATTTTTTCCTAAGTTGATACTTAAACTTTTTT--GGTCCAATTTCGTAT-CC-AAACTTG
* *
22441584 ACTCTTTTTCTTAATTTGG
62 ACACTTTTTCCTAATTTGG
22441603 CACGTAATCT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
89 35 0.50
90 3 0.04
91 32 0.46
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.48
Consensus pattern (89 bp):
TTGACATTTTTTCCTAAGTTGATACTTAAACTTTTTTGGTCCAATTTCGTATCCAAACTTGACAC
TTTTTCCTAATTTGGTACCTAACC
Found at i:22443121 original size:29 final size:29
Alignment explanation
Indices: 22443077--22443141 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
22443067 AGACCGTGTG
** *
22443077 GGCACACAGTTGTGTGGCTCATATGGTCT
1 GGCACACAGTCATGTGGCTCATACGGTCT
22443106 GGCACACAGTCATGTGGCTCATACGGTCT
1 GGCACACAGTCATGTGGCTCATACGGTCT
22443135 GGCACAC
1 GGCACAC
22443142 GACTGTCTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (29 bp):
GGCACACAGTCATGTGGCTCATACGGTCT
Found at i:22460642 original size:25 final size:25
Alignment explanation
Indices: 22460614--22460664 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
22460604 ATCACTTTAA
* *
22460614 TATTAAATTAATATAATATTTATCT
1 TATTAAAATAATAGAATATTTATCT
*
22460639 TATTAAAATAATAGATTATTTATCT
1 TATTAAAATAATAGAATATTTATCT
22460664 T
1 T
22460665 TATATTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (25 bp):
TATTAAAATAATAGAATATTTATCT
Found at i:22460661 original size:20 final size:20
Alignment explanation
Indices: 22460620--22460661 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
22460610 TTAATATTAA
* *
22460620 ATTAATATAATATTTATCTT
1 ATTAAAATAATAATTATCTT
22460640 ATTAAAATAATAGATTAT-TT
1 ATTAAAATAATA-ATTATCTT
22460660 AT
1 AT
22460662 CTTTATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (20 bp):
ATTAAAATAATAATTATCTT
Found at i:22460757 original size:31 final size:29
Alignment explanation
Indices: 22460704--22460802 Score: 81
Period size: 29 Copynumber: 3.1 Consensus size: 29
22460694 ATTTATCTAC
22460704 AAGATAAACATTAAATTTAATTTAATATT
1 AAGATAAACATTAAATTTAATTTAATATT
* *
22460733 AAGATAATCACTTTAATATTAATTTAATAAAATACTATT
1 AAGATAAACA-TTAAAT-TTAA-TT--T---A-A-TATT
*
22460772 AAGATAAATATTAAATTTAATTTAATATT
1 AAGATAAACATTAAATTTAATTTAATATT
22460801 AA
1 AA
22460803 ACTATTAACA
Statistics
Matches: 55, Mismatches: 5, Indels: 20
0.69 0.06 0.25
Matches are distributed among these distances:
29 15 0.27
30 6 0.11
31 5 0.09
32 2 0.04
34 2 0.04
36 2 0.04
37 5 0.09
38 6 0.11
39 12 0.22
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (29 bp):
AAGATAAACATTAAATTTAATTTAATATT
Found at i:22460798 original size:37 final size:37
Alignment explanation
Indices: 22460729--22460820 Score: 107
Period size: 37 Copynumber: 2.4 Consensus size: 37
22460719 TTTAATTTAA
*
22460729 TATTAAGATAATCACTTTAATATTAATTTAATA-AAATAC
1 TATTAAGATAAT-A-TTAAATATTAATTTAATATAAA-AC
*
22460768 TATTAAGATAAATATTAAAT-TTAATTTAATATTAAAC
1 TATTAAGAT-AATATTAAATATTAATTTAATATAAAAC
*
22460805 TATTAACATAATATTA
1 TATTAAGATAATATTA
22460821 TTTTTGGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
36 7 0.15
37 21 0.44
38 7 0.15
39 10 0.21
40 3 0.06
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42
Consensus pattern (37 bp):
TATTAAGATAATATTAAATATTAATTTAATATAAAAC
Found at i:22462445 original size:15 final size:15
Alignment explanation
Indices: 22462421--22462452 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
22462411 TATGCATACA
*
22462421 AAATATAAAAGACAT
1 AAATACAAAAGACAT
22462436 AAATACAAAAGACAT
1 AAATACAAAAGACAT
22462451 AA
1 AA
22462453 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:22468754 original size:23 final size:22
Alignment explanation
Indices: 22468712--22468755 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
22468702 AATATTAAAA
22468712 ATATTTTTTATTAACTATTTTAT
1 ATATTTTTTATTAAC-ATTTTAT
22468735 ATATTTTTATAATTAA-ATTTT
1 ATATTTTT-T-ATTAACATTTT
22468756 TAAAATCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 13 0.68
24 1 0.05
25 5 0.26
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
ATATTTTTTATTAACATTTTAT
Found at i:22473843 original size:9 final size:9
Alignment explanation
Indices: 22473829--22473888 Score: 59
Period size: 9 Copynumber: 6.4 Consensus size: 9
22473819 ATTGTTTTAG
22473829 AAAATTTTT
1 AAAATTTTT
22473838 AAAA-TTTT
1 AAAATTTTT
*
22473846 AAATTTTTT
1 AAAATTTTT
*
22473855 ATATATTTTTT
1 A-A-AATTTTT
*
22473866 AGAATTTTT
1 AAAATTTTT
22473875 ATAAATTTTT
1 A-AAATTTTT
22473885 AAAA
1 AAAA
22473889 AATATAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
8 7 0.16
9 19 0.44
10 9 0.21
11 8 0.19
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (9 bp):
AAAATTTTT
Found at i:22473885 original size:10 final size:10
Alignment explanation
Indices: 22473830--22473885 Score: 57
Period size: 10 Copynumber: 5.9 Consensus size: 10
22473820 TTGTTTTAGA
22473830 AAATTTTTA-
1 AAATTTTTAT
22473839 AAA-TTTTA-
1 AAATTTTTAT
*
22473847 AATTTTTTAT
1 AAATTTTTAT
*
22473857 ATATTTTT-T
1 AAATTTTTAT
22473866 AGAATTTTTAT
1 A-AATTTTTAT
22473877 AAATTTTTA
1 AAATTTTTA
22473886 AAAAATATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
8 7 0.18
9 10 0.26
10 20 0.51
11 2 0.05
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (10 bp):
AAATTTTTAT
Found at i:22473891 original size:11 final size:10
Alignment explanation
Indices: 22473823--22473889 Score: 50
Period size: 10 Copynumber: 6.9 Consensus size: 10
22473813 AAAATTATTG
22473823 TTTTAGAAAAT
1 TTTTA-AAAAT
22473834 TTTT-AAAA-
1 TTTTAAAAAT
*
22473842 TTTT-AAATT
1 TTTTAAAAAT
* *
22473851 TTTTATATAT
1 TTTTAAAAAT
* *
22473861 TTTTTAGAAT
1 TTTTAAAAAT
*
22473871 TTTTATAAAT
1 TTTTAAAAAT
22473881 TTTTAAAAA
1 TTTTAAAAA
22473890 ATATAAAATT
Statistics
Matches: 42, Mismatches: 12, Indels: 5
0.71 0.20 0.08
Matches are distributed among these distances:
8 7 0.17
9 8 0.19
10 23 0.55
11 4 0.10
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (10 bp):
TTTTAAAAAT
Found at i:22473927 original size:18 final size:19
Alignment explanation
Indices: 22473906--22473944 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
22473896 AATTTGAAAC
* *
22473906 TTTTATAAA-TATTTTGAA
1 TTTTAAAAATTATTTTAAA
22473924 TTTTAAAAATTATTTTAAA
1 TTTTAAAAATTATTTTAAA
22473943 TT
1 TT
22473945 ATTTTTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (19 bp):
TTTTAAAAATTATTTTAAA
Found at i:22476222 original size:19 final size:18
Alignment explanation
Indices: 22476198--22476249 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
22476188 TTCATGCCAT
22476198 TTTTTAAATTTTTATGAAA
1 TTTTTAAATTTTTATG-AA
22476217 TTTTTATATATTTTT-TGAA
1 TTTTTA-A-ATTTTTATGAA
*
22476236 TTTTAAAATTTTTA
1 TTTTTAAATTTTTA
22476250 ATACCTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
17 6 0.21
18 1 0.03
19 13 0.45
20 3 0.10
21 6 0.21
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (18 bp):
TTTTTAAATTTTTATGAA
Found at i:22476229 original size:10 final size:10
Alignment explanation
Indices: 22476196--22476249 Score: 53
Period size: 9 Copynumber: 5.7 Consensus size: 10
22476186 ACTTCATGCC
22476196 ATTTTT-TAA
1 ATTTTTATAA
22476205 ATTTTTATGAA
1 ATTTTTAT-AA
*
22476216 ATTTTTATAT
1 ATTTTTATAA
*
22476226 ATTTTT-TGA
1 ATTTTTATAA
22476235 A-TTTTA-AA
1 ATTTTTATAA
22476243 ATTTTTA
1 ATTTTTA
22476250 ATACCTTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 6 0.16
9 13 0.35
10 8 0.22
11 10 0.27
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (10 bp):
ATTTTTATAA
Found at i:22477826 original size:91 final size:90
Alignment explanation
Indices: 22477651--22477815 Score: 221
Period size: 91 Copynumber: 1.8 Consensus size: 90
22477641 CAGTTATTTA
*
22477651 CAAACACTAGTGGTTTATCTACAAACTTACTGGCAACTTTTATTTGCAAACCTGTGTGCATTCAC
1 CAAACACTAGTGGTTTATCTACAAACTTACTGGCAACTTTTATTTGCAAACCCGTGTGCATTCAC
22477716 AACCTACTGACAACATATTAGCCTG
66 AACCTACTGACAACATATTAGCCTG
* * *
22477741 CAAACACTGGTGGTTTAT-T-CACAACTTTTACTTGCAACTTTTATCTT-CAAACCCGTTGTGTA
1 CAAACACTAGTGGTTTATCTACA-AAC--TTACTGGCAACTTTTAT-TTGCAAACCCG-TGTGCA
22477803 TTCACAA-CTACTG
61 TTCACAACCTACTG
22477816 GCAGCGTATT
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
88 2 0.03
89 4 0.06
90 17 0.26
91 29 0.44
92 14 0.21
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (90 bp):
CAAACACTAGTGGTTTATCTACAAACTTACTGGCAACTTTTATTTGCAAACCCGTGTGCATTCAC
AACCTACTGACAACATATTAGCCTG
Found at i:22480191 original size:43 final size:43
Alignment explanation
Indices: 22480063--22480192 Score: 149
Period size: 43 Copynumber: 3.0 Consensus size: 43
22480053 CATAGGATTC
22480063 CGTTATGTG-TTATCATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTTATGTGATTA-CATGTAAGACCACGTCTAGGACGTTGGCAT
* * * * **
22480106 CGACT-TGTGACTTACGTGTAAGACC-CTGTTTGGGACAATGGCAT
1 CG-TTATGTGA-TTACATGTAAGACCAC-GTCTAGGACGTTGGCAT
22480150 CGTTATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTTATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
22480193 TGTACGAAAT
Statistics
Matches: 69, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
43 34 0.49
44 32 0.46
45 3 0.04
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTTATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
Found at i:22480606 original size:22 final size:21
Alignment explanation
Indices: 22480564--22480606 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
22480554 CTTATTTCGG
* *
22480564 TTTGAATAGATTAATTTTTTT
1 TTTGAATAGATTAAATGTTTT
*
22480585 TTTGTATATGATTAAATGTTTT
1 TTTGAATA-GATTAAATGTTTT
22480607 CGTTGCTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (21 bp):
TTTGAATAGATTAAATGTTTT
Found at i:22484022 original size:3 final size:3
Alignment explanation
Indices: 22484014--22484075 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
22484004 TAAACTAAAT
22484014 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
22484062 AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AA
22484076 TAATAATTGT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:22486225 original size:3 final size:3
Alignment explanation
Indices: 22486217--22486252 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
22486207 AATTTTGGGG
22486217 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
22486253 GGTATTTGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:22486848 original size:13 final size:14
Alignment explanation
Indices: 22486826--22486863 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
22486816 AAATTCAACC
*
22486826 CTTAATTTTTTAATA
1 CTTAA-TTTTTAACA
22486841 CTT-ATTTTTAACA
1 CTTAATTTTTAACA
22486854 CTTAATTTTT
1 CTTAATTTTT
22486864 CAATTTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 11 0.52
14 7 0.33
15 3 0.14
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (14 bp):
CTTAATTTTTAACA
Found at i:22487095 original size:16 final size:16
Alignment explanation
Indices: 22487074--22487104 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22487064 ATGATCCCAA
22487074 AATATATTTTGAAAAG
1 AATATATTTTGAAAAG
*
22487090 AATATATTTTTAAAA
1 AATATATTTTGAAAA
22487105 ATTAATTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (16 bp):
AATATATTTTGAAAAG
Found at i:22489031 original size:43 final size:43
Alignment explanation
Indices: 22488968--22489150 Score: 305
Period size: 43 Copynumber: 4.3 Consensus size: 43
22488958 CTAACGTTAT
* *
22488968 AAACGCCGCTAAATGTCATGTTCTTTAGCGGCGCTTTTCCCTA-
1 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCC-AC
* *
22489011 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCCTTTCCTAC
1 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
22489054 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
*
22489097 AAACGCCGCTAAAGGCCATGTTCTTTAGCTGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
22489140 AAACGCCGCTA
1 AAACGCCGCTA
22489151 TTGTTTGGTG
Statistics
Matches: 132, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
42 1 0.01
43 131 0.99
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
Found at i:22489691 original size:25 final size:25
Alignment explanation
Indices: 22489657--22489722 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
22489647 TATTTTAAAA
* *
22489657 TTATTAAGTTATGTAAATGTATGAG
1 TTATTAAGTTATGTAAATATATAAG
* *
22489682 TTATTAAGTTATGCATATATATAAG
1 TTATTAAGTTATGTAAATATATAAG
22489707 TTATTAAGTTATGTAA
1 TTATTAAGTTATGTAA
22489723 GTTATTATGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.45
Consensus pattern (25 bp):
TTATTAAGTTATGTAAATATATAAG
Found at i:22489723 original size:17 final size:17
Alignment explanation
Indices: 22489657--22489729 Score: 62
Period size: 17 Copynumber: 4.4 Consensus size: 17
22489647 TATTTTAAAA
*
22489657 TTATTAAGTTATGTAAA
1 TTATTAAGTTATGTAAG
*
22489674 TGTA-TGAGTTAT-TAAG
1 T-TATTAAGTTATGTAAG
** *
22489690 TTATGCA-TATATATAAG
1 TTATTAAGT-TATGTAAG
22489707 TTATTAAGTTATGTAAG
1 TTATTAAGTTATGTAAG
22489724 TTATTA
1 TTATTA
22489730 TGTGAGTTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
15 3 0.07
16 8 0.18
17 30 0.68
18 3 0.07
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.47
Consensus pattern (17 bp):
TTATTAAGTTATGTAAG
Found at i:22489844 original size:17 final size:17
Alignment explanation
Indices: 22489822--22489881 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
22489812 ACATATTTTA
22489822 AAATTATTAAGTTATGT
1 AAATTATTAAGTTATGT
* *
22489839 AAATTATGTGAGTTGT-T
1 AAATTAT-TAAGTTATGT
*
22489856 AAGTTATTAAGTTATGT
1 AAATTATTAAGTTATGT
*
22489873 AAGTTATTA
1 AAATTATTA
22489882 TGTGAATTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
16 6 0.17
17 24 0.67
18 6 0.17
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47
Consensus pattern (17 bp):
AAATTATTAAGTTATGT
Found at i:22489867 original size:34 final size:36
Alignment explanation
Indices: 22489825--22489908 Score: 118
Period size: 34 Copynumber: 2.3 Consensus size: 36
22489815 TATTTTAAAA
* *
22489825 TTATTAAGTTATGTAA-ATTATGTGAGTTGT-TAAG
1 TTATTAAGTTATGTAATATTATGTGAATTATATAAG
22489859 TTATTAAGTTATGTAAGTTATTATGTGAATTATATAAG
1 TTATTAAGTTATGTAA--TATTATGTGAATTATATAAG
22489897 TTATTAAGTTAT
1 TTATTAAGTTAT
22489909 ATGGTATGAC
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
34 16 0.36
37 12 0.27
38 16 0.36
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.49
Consensus pattern (36 bp):
TTATTAAGTTATGTAATATTATGTGAATTATATAAG
Found at i:22489877 original size:9 final size:8
Alignment explanation
Indices: 22489825--22489881 Score: 60
Period size: 9 Copynumber: 6.8 Consensus size: 8
22489815 TATTTTAAAA
22489825 TTATTAAG
1 TTATTAAG
*
22489833 TTATGTAAA
1 TTAT-TAAG
*
22489842 TTATGTGAG
1 TTAT-TAAG
*
22489851 TTGTTAAG
1 TTATTAAG
22489859 TTATTAAG
1 TTATTAAG
22489867 TTATGTAAG
1 TTAT-TAAG
22489876 TTATTA
1 TTATTA
22489882 TGTGAATTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 20 0.49
9 21 0.51
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (8 bp):
TTATTAAG
Found at i:22489910 original size:17 final size:17
Alignment explanation
Indices: 22489825--22489910 Score: 66
Period size: 17 Copynumber: 4.8 Consensus size: 17
22489815 TATTTTAAAA
* *
22489825 TTATTAAGTTATGTAAA
1 TTATTAAGTTATATAAG
* *
22489842 TTATGTGAGTTGT-TAAG
1 TTAT-TAAGTTATATAAG
*
22489859 TTATTAAGTTATGTAAG
1 TTATTAAGTTATATAAG
*
22489876 TTATTATGTGAATTATATAAG
1 TTATTA----AGTTATATAAG
22489897 TTATTAAGTTATAT
1 TTATTAAGTTATAT
22489911 GGTATGACAT
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
16 6 0.11
17 28 0.51
18 6 0.11
21 15 0.27
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (17 bp):
TTATTAAGTTATATAAG
Found at i:22490863 original size:8 final size:8
Alignment explanation
Indices: 22490847--22490877 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
22490837 ATTCGGGCCT
*
22490847 ACAATGCA
1 ACAAGGCA
22490855 ACAAGGCA
1 ACAAGGCA
22490863 ACAAGGCA
1 ACAAGGCA
22490871 ACAAGGC
1 ACAAGGC
22490878 CTTCATGAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
ACAAGGCA
Found at i:22492365 original size:21 final size:21
Alignment explanation
Indices: 22492341--22492387 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
22492331 TTAACTATTT
* *
22492341 AAATTAGTTAATGATATTGTA
1 AAATTAGATAATGAAATTGTA
* *
22492362 AAATTAGATGATTAAATTGTA
1 AAATTAGATAATGAAATTGTA
22492383 AAATT
1 AAATT
22492388 TCAAATTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (21 bp):
AAATTAGATAATGAAATTGTA
Found at i:22493733 original size:47 final size:48
Alignment explanation
Indices: 22493670--22493768 Score: 146
Period size: 47 Copynumber: 2.1 Consensus size: 48
22493660 CATAGTTTTG
* * **
22493670 TTTAGGTAATATTTATAAAAATTAGATAAAATTATCAATTTTAGT-TT
1 TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAATTTTAGTGTT
*
22493717 TTTAAGTAATATTTATAAAAATTAGGTAAAAATAAAAATTTTAGTGTT
1 TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAATTTTAGTGTT
22493765 TTTA
1 TTTA
22493769 TTTCTTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
47 40 0.87
48 6 0.13
ACGTcount: A:0.44, C:0.01, G:0.09, T:0.45
Consensus pattern (48 bp):
TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAATTTTAGTGTT
Found at i:22493806 original size:9 final size:9
Alignment explanation
Indices: 22493792--22493840 Score: 73
Period size: 9 Copynumber: 5.4 Consensus size: 9
22493782 TTTCTTTTAT
*
22493792 TTTTTATAA
1 TTTTTACAA
22493801 TTTTTACAA
1 TTTTTACAA
22493810 TTTTTTACAA
1 -TTTTTACAA
22493820 -TTTTACAA
1 TTTTTACAA
22493828 TTTTTACAA
1 TTTTTACAA
22493837 TTTT
1 TTTT
22493841 AAATTATTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
8 8 0.22
9 20 0.54
10 9 0.24
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTTTACAA
Found at i:22493812 original size:19 final size:18
Alignment explanation
Indices: 22493790--22493845 Score: 80
Period size: 17 Copynumber: 3.2 Consensus size: 18
22493780 TTTTTCTTTT
*
22493790 ATTTTTTATAATTTTTACA
1 ATTTTTTACAA-TTTTACA
22493809 ATTTTTTACAATTTTACA
1 ATTTTTTACAATTTTACA
22493827 A-TTTTTACAATTTTA-A
1 ATTTTTTACAATTTTACA
22493843 ATT
1 ATT
22493846 ATTATATTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
16 2 0.06
17 15 0.43
18 8 0.23
19 10 0.29
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTTTACAATTTTACA
Found at i:22493813 original size:8 final size:8
Alignment explanation
Indices: 22493802--22493845 Score: 54
Period size: 8 Copynumber: 5.2 Consensus size: 8
22493792 TTTTTATAAT
22493802 TTTTACAA
1 TTTTACAA
22493810 TTTTTTACAA
1 --TTTTACAA
22493820 TTTTACAA
1 TTTTACAA
22493828 TTTTTACAA
1 -TTTTACAA
22493837 TTTTA-AA
1 TTTTACAA
22493844 TT
1 TT
22493846 ATTATATTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
7 4 0.12
8 13 0.39
9 8 0.24
10 8 0.24
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (8 bp):
TTTTACAA
Found at i:22493859 original size:21 final size:20
Alignment explanation
Indices: 22493834--22493888 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 20
22493824 ACAATTTTTA
22493834 CAATTTTAAATTATT-ATATT
1 CAATTTTAAATTATTCATA-T
*
22493854 CAAATTATTATA-TATTGCATAT
1 C-AATT-TTAAATTATT-CATAT
22493876 CAATTTTAAATTA
1 CAATTTTAAATTA
22493889 ATAATCTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
20 5 0.18
21 14 0.50
22 6 0.21
23 3 0.11
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.49
Consensus pattern (20 bp):
CAATTTTAAATTATTCATAT
Found at i:22494413 original size:80 final size:81
Alignment explanation
Indices: 22494278--22494441 Score: 249
Period size: 80 Copynumber: 2.0 Consensus size: 81
22494268 TTTTAAATCC
* * * *
22494278 TTGAGCATTAGCGGCGCATCCTTAAAAACGCCGCTAAATCCTCGAAAGCTAAGAAAACGACGTCG
1 TTGAGCATTAGCGGCGCATACTTAAAAACGCCACCAAATCCCCGAAAGCTAAGAAAACGACGTCG
22494343 TTGGGCTTAGGT-TTT
66 TTGGGCTTAGGTATTT
* * * *
22494358 TTGAGCATTATCGGTGCTTACTTAAAAACGCCACCAAATCCCCGAAAGCTCAGAAAACGACGTCG
1 TTGAGCATTAGCGGCGCATACTTAAAAACGCCACCAAATCCCCGAAAGCTAAGAAAACGACGTCG
22494423 TTGGGCTTAGGTATTT
66 TTGGGCTTAGGTATTT
22494439 TTG
1 TTG
22494442 CGGCACTTTC
Statistics
Matches: 75, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 69 0.92
81 6 0.08
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (81 bp):
TTGAGCATTAGCGGCGCATACTTAAAAACGCCACCAAATCCCCGAAAGCTAAGAAAACGACGTCG
TTGGGCTTAGGTATTT
Found at i:22494492 original size:41 final size:41
Alignment explanation
Indices: 22494441--22494554 Score: 147
Period size: 41 Copynumber: 2.8 Consensus size: 41
22494431 AGGTATTTTT
*
22494441 GCGGCACTTTCCCAAAAACGCCGCTAAAGCCTTGAGCATTA
1 GCGGCGCTTTCCCAAAAACGCCGCTAAAGCCTTGAGCATTA
* * * * * *
22494482 GCGGCGCTTTCACAGAAACGTCGCTAAATCCCTGGGCATTA
1 GCGGCGCTTTCCCAAAAACGCCGCTAAAGCCTTGAGCATTA
* *
22494523 GTGGCGCTTTCCCAAAAATGCCGCTAAAGCCT
1 GCGGCGCTTTCCCAAAAACGCCGCTAAAGCCT
22494555 CGAAAGCTCA
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (41 bp):
GCGGCGCTTTCCCAAAAACGCCGCTAAAGCCTTGAGCATTA
Found at i:22495112 original size:114 final size:114
Alignment explanation
Indices: 22494912--22495562 Score: 893
Period size: 114 Copynumber: 5.8 Consensus size: 114
22494902 CGCTAAAGCA
*
22494912 CGCTTACTTAAAAACGCCACTAAATCCCTGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTAT
1 CGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTAT
* *
22494977 TTTTGCGGCGCTTTCCCAAAAATGCCGCTAAATCCCTGAGCATTAGCGG
66 TTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGG
* * *
22495026 CGCTTACTTAAAAAAGCCACTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCCTAGGTAT
1 CGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTAT
22495091 TTTTGCGGCGCTTTCCCAAAAACGCCGCT-AA------AGC--T-----
66 TTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGG
* ** * *
22495126 CGCTTACTTAAAAACGCCACTAAATCCTCGAAAGCTCAGAAAACGGCGTTATTGGGCTTACGTGT
1 CGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTAT
*
22495191 TTTTGCGACGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGG
66 TTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGG
* * *
22495240 CGCTTACTTAAAAACGCCACAAAATCCCTGAAAGCTCAGAAAACGACGTCGTTGGGCTTAGGTAT
1 CGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTAT
22495305 TTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGG
66 TTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGG
* *
22495354 CGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAATGGCGTCGTTGGGCTTAGGTTT
1 CGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTAT
* * *
22495419 TTTTGTGGCGCTTTCTCAAAAACGCTGCTAAAGCCCTGAGCATTAGCGG
66 TTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGG
* * * * * *
22495468 CGCTTTCTTAAAAATGCCGCTAAATCCCCGAAAGCTC-GAAAAACGACATTGTTGGGCTTAGGTA
1 CGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAG-AAAACGGCGTCGTTGGGCTTAGGTA
* * * ***
22495532 -CTTTGCGACACTTTCTGGAAAACGCCGCTAA
65 TTTTTGCGGCGCTTTCCCAAAAACGCCGCTAA
22495563 TGCTTATTTT
Statistics
Matches: 476, Mismatches: 46, Indels: 31
0.86 0.08 0.06
Matches are distributed among these distances:
100 85 0.18
101 2 0.00
105 1 0.00
107 6 0.01
109 1 0.00
113 27 0.06
114 354 0.74
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (114 bp):
CGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTAT
TTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGG
Found at i:22495183 original size:214 final size:213
Alignment explanation
Indices: 22494808--22495562 Score: 992
Period size: 214 Copynumber: 3.5 Consensus size: 213
22494798 ATCAGATTTG
* * * *
22494808 GCGGCGCTTCCTTAAAAACGCCATTAAATCCTCGAAAGCTTAGAAAACGGCATCGTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCTTAG
* * *
22494873 GTTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAAGCACGCTTACTTAAAAACGCCACTAAATC
66 GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCTCGCTTACTTAAAAACGCCACTAAATC
*
22494938 CCTGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAATGCC
131 CC-GAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCC
*
22495003 GCTAAATCCCTGAGCATTA
195 GCTAAAGCCCTGAGCATTA
* *
22495022 GCGGCGCTTACTTAAAAAAGCCACTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCCTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCTTAG
22495087 GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCTCGCTTACTTAAAAACGCCACTAAATC
66 GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCTCGCTTACTTAAAAACGCCACTAAATC
** * * *
22495152 CTCGAAAGCTCAGAAAACGGCGTTATTGGGCTTACGTGTTTTTGCGACGCTTTCCCAAAAACGCC
131 C-CGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCC
22495217 GCTAAAGCCCTGAGCATTA
195 GCTAAAGCCCTGAGCATTA
* * * *
22495236 GCGGCGCTTACTTAAAAACGCCACAAAATCCCTGAAAGCTCAGAAAACGACGTCGTTGGGCTTAG
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCTTAG
22495301 GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAA
66 GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCT-AA------AGC--T-----CGCTTACTTAAA
* * *
22495366 AACGCCACTAAATCCCCGAAAGCTCAGAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCT
117 AACGCCACTAAAT-CCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTTGCGGCGCT
* *
22495431 TTCTCAAAAACGCTGCTAAAGCCCTGAGCATTA
181 TTCCCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * * * * * *
22495464 GCGGCGCTTTCTTAAAAATGCCGCTAAATCCCCGAAAGC-TCGAAAAACGACATTGTTGGGCTTA
1 GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTTAG-AAAACGGCGTCGTTGGGCTTA
* * * ***
22495528 GGTA-CTTTGCGACACTTTCTGGAAAACGCCGCTAA
65 GGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAA
22495563 TGCTTATTTT
Statistics
Matches: 478, Mismatches: 46, Indels: 22
0.88 0.08 0.04
Matches are distributed among these distances:
214 288 0.60
215 3 0.01
221 3 0.01
223 1 0.00
226 2 0.00
227 24 0.05
228 155 0.32
229 2 0.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (213 bp):
GCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCTTAG
GTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCTCGCTTACTTAAAAACGCCACTAAATC
CCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCCG
CTAAAGCCCTGAGCATTA
Found at i:22500086 original size:25 final size:25
Alignment explanation
Indices: 22500058--22500106 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
22500048 GCAAACATGT
* * *
22500058 AAACATGAAGCTCTTTTGAGCCATA
1 AAACAGGAAGCTCATGTGAGCCATA
*
22500083 AAACGGGAAGCTCATGTGAGCCAT
1 AAACAGGAAGCTCATGTGAGCCAT
22500107 GTAACGAGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (25 bp):
AAACAGGAAGCTCATGTGAGCCATA
Found at i:22500112 original size:25 final size:24
Alignment explanation
Indices: 22500064--22500146 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 24
22500054 ATGTAAACAT
* * *
22500064 GAAGCTCTTTTGAGCCATAAAACGG
1 GAAGCTCATGTGAGCCAT-TAACGG
*
22500089 GAAGCTCATGTGAGCCATGTAACGA
1 GAAGCTCATGTGAGCCAT-TAACGG
**
22500114 GAAGCTC-TAGAAAGCCATTAACGG
1 GAAGCTCAT-GTGAGCCATTAACGG
22500138 GAAGCTCAT
1 GAAGCTCAT
22500147 ACTAGCTAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
24 13 0.27
25 35 0.73
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (24 bp):
GAAGCTCATGTGAGCCATTAACGG
Found at i:22504707 original size:393 final size:393
Alignment explanation
Indices: 22503982--22504769 Score: 1576
Period size: 393 Copynumber: 2.0 Consensus size: 393
22503972 CACAACTAGT
22503982 TTAGAATCAACCATTATAAAATTCAAGAATTTAACAACTAAAAACTTTTTAGCTCCAGCATCTTT
1 TTAGAATCAACCATTATAAAATTCAAGAATTTAACAACTAAAAACTTTTTAGCTCCAGCATCTTT
22504047 GGTTTTGTATTTATGGTCCAATGACGTCCATAATTCATTAGCCATCTTATTGACACTGTATACTT
66 GGTTTTGTATTTATGGTCCAATGACGTCCATAATTCATTAGCCATCTTATTGACACTGTATACTT
22504112 CGTACAATGCATCCATCAACCCATTTAGGATTTAATTTTGACACAGGAAATCAGAAATGCTCCCA
131 CGTACAATGCATCCATCAACCCATTTAGGATTTAATTTTGACACAGGAAATCAGAAATGCTCCCA
22504177 AGCTTTAACTGCAGTGAAGACGATAACATCATCTACCTCACCCTCTTTAATAGTAGGAAGGTCAT
196 AGCTTTAACTGCAGTGAAGACGATAACATCATCTACCTCACCCTCTTTAATAGTAGGAAGGTCAT
22504242 CATTCAAAAATTTGGCTAAGTTCAACATGGTCAAATAAACCAACATCTTCTGTTTCCATGTCTTG
261 CATTCAAAAATTTGGCTAAGTTCAACATGGTCAAATAAACCAACATCTTCTGTTTCCATGTCTTG
22504307 AAATTTTGTTAAGAGAATTTCACAGGCTTCTCGTTGTGGTTACAACCACCGACAACATTGAGTCT
326 AAATTTTGTTAAGAGAATTTCACAGGCTTCTCGTTGTGGTTACAACCACCGACAACATTGAGTCT
22504372 TGA
391 TGA
22504375 TTAGAATCAACCATTATAAAATTCAAGAATTTAACAACTAAAAACTTTTTAGCTCCAGCATCTTT
1 TTAGAATCAACCATTATAAAATTCAAGAATTTAACAACTAAAAACTTTTTAGCTCCAGCATCTTT
22504440 GGTTTTGTATTTATGGTCCAATGACGTCCATAATTCATTAGCCATCTTATTGACACTGTATACTT
66 GGTTTTGTATTTATGGTCCAATGACGTCCATAATTCATTAGCCATCTTATTGACACTGTATACTT
22504505 CGTACAATGCATCCATCAACCCATTTAGGATTTAATTTTGACACAGGAAATCAGAAATGCTCCCA
131 CGTACAATGCATCCATCAACCCATTTAGGATTTAATTTTGACACAGGAAATCAGAAATGCTCCCA
22504570 AGCTTTAACTGCAGTGAAGACGATAACATCATCTACCTCACCCTCTTTAATAGTAGGAAGGTCAT
196 AGCTTTAACTGCAGTGAAGACGATAACATCATCTACCTCACCCTCTTTAATAGTAGGAAGGTCAT
22504635 CATTCAAAAATTTGGCTAAGTTCAACATGGTCAAATAAACCAACATCTTCTGTTTCCATGTCTTG
261 CATTCAAAAATTTGGCTAAGTTCAACATGGTCAAATAAACCAACATCTTCTGTTTCCATGTCTTG
22504700 AAATTTTGTTAAGAGAATTTCACAGGCTTCTCGTTGTGGTTACAACCACCGACAACATTGAGTCT
326 AAATTTTGTTAAGAGAATTTCACAGGCTTCTCGTTGTGGTTACAACCACCGACAACATTGAGTCT
22504765 TGA
391 TGA
22504768 TT
1 TT
22504770 CAAAGCTTGA
Statistics
Matches: 395, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
393 395 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (393 bp):
TTAGAATCAACCATTATAAAATTCAAGAATTTAACAACTAAAAACTTTTTAGCTCCAGCATCTTT
GGTTTTGTATTTATGGTCCAATGACGTCCATAATTCATTAGCCATCTTATTGACACTGTATACTT
CGTACAATGCATCCATCAACCCATTTAGGATTTAATTTTGACACAGGAAATCAGAAATGCTCCCA
AGCTTTAACTGCAGTGAAGACGATAACATCATCTACCTCACCCTCTTTAATAGTAGGAAGGTCAT
CATTCAAAAATTTGGCTAAGTTCAACATGGTCAAATAAACCAACATCTTCTGTTTCCATGTCTTG
AAATTTTGTTAAGAGAATTTCACAGGCTTCTCGTTGTGGTTACAACCACCGACAACATTGAGTCT
TGA
Found at i:22505221 original size:78 final size:77
Alignment explanation
Indices: 22505044--22505222 Score: 223
Period size: 78 Copynumber: 2.3 Consensus size: 77
22505034 TAAATGGAAG
* * * * *
22505044 GAATAAAATCCTGAAGCATAATTATTCAATTGATTTCTATTTGAAACAAAAAATTGAACAAATCC
1 GAATAAAATCATGAAACAGAATTACTCAATTGATTTCTATTTGAAACAAAAAATCGAACAAATCC
*
22505109 TGTTAAACGACA
66 TATTAAACGACA
* * * * *
22505121 GAAATAAAATCTTAAAACAGAATTACTCAGTTGATTTTTGTTTGAAACAAAAAATCGAACAAATC
1 G-AATAAAATCATGAAACAGAATTACTCAATTGATTTCTATTTGAAACAAAAAATCGAACAAATC
*
22505186 CTATTAAATGACAA
65 CTATTAAACGAC-A
*
22505200 GAATAAAATCATGAAATAGAATT
1 GAATAAAATCATGAAACAGAATT
22505223 GTTTAGTTTT
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
77 1 0.01
78 83 0.97
79 2 0.02
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.29
Consensus pattern (77 bp):
GAATAAAATCATGAAACAGAATTACTCAATTGATTTCTATTTGAAACAAAAAATCGAACAAATCC
TATTAAACGACA
Found at i:22513365 original size:10 final size:10
Alignment explanation
Indices: 22513346--22513378 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
22513336 TGGGCCAAGT
22513346 GGGC-CACAC
1 GGGCACACAC
22513355 GGGCACACAC
1 GGGCACACAC
22513365 GGGCACACAC
1 GGGCACACAC
22513375 GGGC
1 GGGC
22513379 GAGTGAGCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.17
10 19 0.83
ACGTcount: A:0.24, C:0.39, G:0.36, T:0.00
Consensus pattern (10 bp):
GGGCACACAC
Found at i:22518980 original size:27 final size:27
Alignment explanation
Indices: 22518950--22519004 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
22518940 GCTAACCCCA
22518950 GTGTGCGAACCTATGTGTGAAACCCTT
1 GTGTGCGAACCTATGTGTGAAACCCTT
* * * *
22518977 GTGTGCGAGCTTGTGTGTGAACCCCTT
1 GTGTGCGAACCTATGTGTGAAACCCTT
22519004 G
1 G
22519005 CTTGTGAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.16, C:0.22, G:0.31, T:0.31
Consensus pattern (27 bp):
GTGTGCGAACCTATGTGTGAAACCCTT
Found at i:22522815 original size:17 final size:17
Alignment explanation
Indices: 22522793--22522825 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22522783 TAGAACTGGG
22522793 TTGAGAAAATTATTTAA
1 TTGAGAAAATTATTTAA
*
22522810 TTGAGAAATTTATTTA
1 TTGAGAAAATTATTTA
22522826 TTTAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (17 bp):
TTGAGAAAATTATTTAA
Found at i:22525630 original size:111 final size:110
Alignment explanation
Indices: 22525436--22525653 Score: 382
Period size: 111 Copynumber: 2.0 Consensus size: 110
22525426 TCTCTATCCG
* *
22525436 TGTGGACGAAAATAGTCCATTTTATAAGCCATTTTTTCACCCAGTTTGGCATGCACCTACAACCA
1 TGTGGACGAAAATAGGCCATTTTATAAGCCATTTTTTCACCCAATTTGGCATGCACCTACAACCA
*
22525501 AAATTTCACATATTTACAAGCTATAATAAGGCACCAAAATCCCCA
66 AAATTTCACATATATACAAGCTATAATAAGGCACCAAAATCCCCA
*
22525546 TGTGGATGAAAATAGGCCATTTTATAAGCCATTTTTCTCACCCAATTTGGCATGCACCTACAACC
1 TGTGGACGAAAATAGGCCATTTTATAAGCCATTTTT-TCACCCAATTTGGCATGCACCTACAACC
*
22525611 AAAATTTCACATATATACAAGCTATCATAAGGCACCAAAATCC
65 AAAATTTCACATATATACAAGCTATAATAAGGCACCAAAATCC
22525654 TGCATATTCT
Statistics
Matches: 102, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
110 34 0.33
111 68 0.67
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (110 bp):
TGTGGACGAAAATAGGCCATTTTATAAGCCATTTTTTCACCCAATTTGGCATGCACCTACAACCA
AAATTTCACATATATACAAGCTATAATAAGGCACCAAAATCCCCA
Found at i:22528110 original size:23 final size:23
Alignment explanation
Indices: 22528080--22528134 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
22528070 CCCTGCTAGG
22528080 CACAAAGCCCAAATAATTACCGA
1 CACAAAGCCCAAATAATTACCGA
*
22528103 CACAAAGCCCAAATAATTACCGG
1 CACAAAGCCCAAATAATTACCGA
*
22528126 CAAAAAGCC
1 CACAAAGCC
22528135 TGCTAGGCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.47, C:0.31, G:0.11, T:0.11
Consensus pattern (23 bp):
CACAAAGCCCAAATAATTACCGA
Found at i:22528172 original size:39 final size:39
Alignment explanation
Indices: 22528103--22528280 Score: 232
Period size: 39 Copynumber: 4.6 Consensus size: 39
22528093 TAATTACCGA
* * * * *
22528103 CACAAAGCCCAAATAATTACCGGCAAAAAGCCTGCTAGG
1 CACATAGCCCGAATAATCACCGACACAAAGCCTGCTAGG
22528142 CACATAGCCCGAATAATCACCGACACAAAGCCTGCTAGG
1 CACATAGCCCGAATAATCACCGACACAAAGCCTGCTAGG
* * *
22528181 CACTTAGCCTGAATAATCACC-AGCACAAAGCCTGCTAGA
1 CACATAGCCCGAATAATCACCGA-CACAAAGCCTGCTAGG
* * **
22528220 CACTTAGCCCGAATAATCATCGGTACAAAGCCTGCTAGG
1 CACATAGCCCGAATAATCACCGACACAAAGCCTGCTAGG
22528259 CACATAGCCCGAATAATCACCG
1 CACATAGCCCGAATAATCACCG
22528281 TATTTCTACT
Statistics
Matches: 122, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
38 1 0.01
39 121 0.99
ACGTcount: A:0.36, C:0.31, G:0.17, T:0.16
Consensus pattern (39 bp):
CACATAGCCCGAATAATCACCGACACAAAGCCTGCTAGG
Found at i:22528641 original size:17 final size:18
Alignment explanation
Indices: 22528611--22528652 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
22528601 TCGAAATTCA
*
22528611 TCAAATTAACTAATTT-TC
1 TCAAA-TAAATAATTTATC
22528629 TCAAATAAATAATTTATC
1 TCAAATAAATAATTTATC
22528647 -CAAATA
1 TCAAATA
22528653 TTATAAGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (18 bp):
TCAAATAAATAATTTATC
Found at i:22535786 original size:21 final size:22
Alignment explanation
Indices: 22535762--22535819 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 22
22535752 TTAGGGTCAT
22535762 AAATAATTAATTAAAGTAT-TA
1 AAATAATTAATTAAAGTATATA
*
22535783 AAATAATATAA-T-AATTATATA
1 AAATAAT-TAATTAAAGTATATA
22535804 AAATTATATTAATTAA
1 AAA-TA-ATTAATTAA
22535820 TCTAAAACGA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
20 5 0.17
21 13 0.43
22 8 0.27
23 3 0.10
24 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
AAATAATTAATTAAAGTATATA
Found at i:22546984 original size:20 final size:20
Alignment explanation
Indices: 22546951--22546998 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
22546941 TAGAGCACTA
* * *
22546951 AAGTGAAAATAGAGGCATCG
1 AAGTGCAAACAGAGGCACCG
*
22546971 AAGTGCAAACAGAGTCACCG
1 AAGTGCAAACAGAGGCACCG
22546991 AAGTGCAA
1 AAGTGCAA
22546999 CCCCATACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.44, C:0.17, G:0.27, T:0.12
Consensus pattern (20 bp):
AAGTGCAAACAGAGGCACCG
Found at i:22549719 original size:15 final size:14
Alignment explanation
Indices: 22549692--22549721 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
22549682 TAGCTAGCTT
22549692 TTTCTTTTCTTTTC
1 TTTCTTTTCTTTTC
22549706 TTTCTTTGTCTTTTC
1 TTTCTTT-TCTTTTC
22549721 T
1 T
22549722 GCAAGATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTCTTTTCTTTTC
Found at i:22554487 original size:84 final size:84
Alignment explanation
Indices: 22554371--22554726 Score: 489
Period size: 84 Copynumber: 4.2 Consensus size: 84
22554361 GGCCGTGTGT
* * * * *
22554371 CCAAA-ACACATGCCCATGTAGGATCCCCAAATCACCAAGTTGGCCACATGGTCGTGTGGCATCA
1 CCAAACACACACGCCCGTGTGGGATCCCTAAATCACCAAGTTGGCCACACGGTCGTGTGGCATCA
*
22554435 AATCACATAACCCTAACTC
66 AATCACATAACCCTAATTC
* *
22554454 CCAAACACACACGCCCGTGTGGGATCCTTAAATCTCCAAGTTGGCCACACGGTCGTGTGGCATCA
1 CCAAACACACACGCCCGTGTGGGATCCCTAAATCACCAAGTTGGCCACACGGTCGTGTGGCATCA
*
22554519 AATCATATAACCCTAATTC
66 AATCACATAACCCTAATTC
* ** * * ** *
22554538 CCTAACACACATACCCCTGTGGGATCCCTAAATCACCAAGTTGGCCAAACGACCGTGTGGAATCA
1 CCAAACACACACGCCCGTGTGGGATCCCTAAATCACCAAGTTGGCCACACGGTCGTGTGGCATCA
22554603 AATCACATAACCCTAATTC
66 AATCACATAACCCTAATTC
* * * * * * *
22554622 CCGAACACACACACTCGTATAGGATCCCTAAATCCCCAAGTTGGCCACACGGTTGTGTGGCATCA
1 CCAAACACACACGCCCGTGTGGGATCCCTAAATCACCAAGTTGGCCACACGGTCGTGTGGCATCA
22554687 AATCACATAACCCTAATTC
66 AATCACATAACCCTAATTC
22554706 CCAAACACACACGCCCGTGTG
1 CCAAACACACACGCCCGTGTG
22554727 AGAAAGGGAC
Statistics
Matches: 235, Mismatches: 37, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
83 5 0.02
84 230 0.98
ACGTcount: A:0.31, C:0.33, G:0.16, T:0.20
Consensus pattern (84 bp):
CCAAACACACACGCCCGTGTGGGATCCCTAAATCACCAAGTTGGCCACACGGTCGTGTGGCATCA
AATCACATAACCCTAATTC
Found at i:22555418 original size:6 final size:6
Alignment explanation
Indices: 22555407--22555448 Score: 50
Period size: 6 Copynumber: 6.7 Consensus size: 6
22555397 TTTTCATATC
22555407 AAAAAT AAAAAT AAAAAT AAGAAA- AAATGAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AA-AAAT AAA--AAT AAAAAT AAAA
22555449 TCTAACCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
5 1 0.03
6 23 0.72
7 5 0.16
8 3 0.09
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:22557717 original size:41 final size:41
Alignment explanation
Indices: 22557660--22557813 Score: 254
Period size: 41 Copynumber: 3.8 Consensus size: 41
22557650 TAAAAAGCTT
* *
22557660 TTAGCGGCGCTTTTTCAAAAACGCTGCTAAATCCTAGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAATCCCAGAGCA
*
22557701 TTAGCGGCGCTATTTCAAAAACGCCGCTAAATCCCAGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAATCCCAGAGCA
* *
22557742 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAATCCCAGAGCA
*
22557783 TTAGCGGCGCTTTTTCAAAAATGCCGCTAAA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
22557814 GCCCCAAAAA
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 106 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAATCCCAGAGCA
Found at i:22568554 original size:34 final size:34
Alignment explanation
Indices: 22568444--22568557 Score: 129
Period size: 34 Copynumber: 3.4 Consensus size: 34
22568434 TCGAATAATG
** * * * *
22568444 ATAAGCATGTCTTTTGCTACTATATTGATTTGTT
1 ATAAGCATGTCAATTACTACCATATTGATCTATT
* * * *
22568478 ATAAGCATATCTATTCCTACCGTATTGATCTATT
1 ATAAGCATGTCAATTACTACCATATTGATCTATT
*
22568512 ATAAGCATGTCAATTACTACCATTTTGATCTATT
1 ATAAGCATGTCAATTACTACCATATTGATCTATT
22568546 ATAAGCATGTCA
1 ATAAGCATGTCA
22568558 TAATGCATTG
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 68 1.00
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (34 bp):
ATAAGCATGTCAATTACTACCATATTGATCTATT
Found at i:22573085 original size:45 final size:45
Alignment explanation
Indices: 22573029--22573162 Score: 128
Period size: 45 Copynumber: 3.0 Consensus size: 45
22573019 CTGTTTGTCT
* * * *
22573029 ACAACGTACTAGTAGCTTTTAT-TTTCACTGATGAGTGATTTATCC
1 ACAACATACTAGCAGCTTTTATATGT-ACTAATGAGTGATTTATCC
** * *
22573074 ACAATTTACTAGCAGATTTTATATGTACTAATGAGTGGTTTATCC
1 ACAACATACTAGCAGCTTTTATATGTACTAATGAGTGATTTATCC
* * * *
22573119 ACAACATACTAGCAACTTTTATCA-GCACCAATGAGTGGTTTATC
1 ACAACATACTAGCAGCTTTTAT-ATGTACTAATGAGTGATTTATC
22573163 AAAATCGTAC
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
45 71 0.96
46 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (45 bp):
ACAACATACTAGCAGCTTTTATATGTACTAATGAGTGATTTATCC
Found at i:22573738 original size:67 final size:67
Alignment explanation
Indices: 22573567--22573811 Score: 341
Period size: 66 Copynumber: 3.7 Consensus size: 67
22573557 AACATAAAGC
* *
22573567 GTCCTCCAAGACATTAAACATGGGGTATGATGTGTAAGACTATAGCTCGGTTATGGTAATATACA
1 GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACA
22573632 GA
66 GA
*
22573634 GT-CCCCAAGACATTGAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACA
1 GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACA
22573698 GA
66 GA
* * * * *
22573700 GTCCCCCAAGACATTGAACATGGGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATAGA
1 GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACA
22573765 GA
66 GA
* * * * * * *
22573767 GTTCACTAGGACATTAAACAT-GTGTATGATTTATAAGACCATAGC
1 GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGC
22573812 ACGACTATGA
Statistics
Matches: 162, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
66 84 0.52
67 78 0.48
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (67 bp):
GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACA
GA
Found at i:22573768 original size:133 final size:133
Alignment explanation
Indices: 22573567--22573811 Score: 348
Period size: 133 Copynumber: 1.8 Consensus size: 133
22573557 AACATAAAGC
* * * * *
22573567 GTCCTCCAAGACATTAAACATGGGGTATGATGTGTAAGACTATAGCTCGGTTATGGTAATATACA
1 GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATACA
* * *
22573632 GAG-TCCCCAAGACATTGAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATA
66 GAGTTCACCAAGACATTAAACAT-GGGTATGATGTATAAGACCATAGCTCGGTTATGGTAATATA
22573696 CAGA
130 CAGA
* *
22573700 GTCCCCCAAGACATTGAACATGGGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATAGA
1 GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATACA
* * * *
22573765 GAGTTCACTAGGACATTAAACATGTGTATGATTTATAAGACCATAGC
66 GAGTTCACCAAGACATTAAACATGGGTATGATGTATAAGACCATAGC
22573812 ACGACTATGA
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
133 82 0.85
134 15 0.15
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (133 bp):
GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATACA
GAGTTCACCAAGACATTAAACATGGGTATGATGTATAAGACCATAGCTCGGTTATGGTAATATAC
AGA
Found at i:22573828 original size:66 final size:67
Alignment explanation
Indices: 22573522--22573954 Score: 223
Period size: 67 Copynumber: 6.5 Consensus size: 67
22573512 GGGCTATAAT
* * * *** * * * *
22573522 GGGTATGATGTGTAAAATCATAGCTTAACTATAGCAACATAAAGCGTCCT-CCAAGACATTAAAC
1 GGGTATGATGTATAAGACCATAGCACGACTATGGCAACATAAAGAG-CCTACTAGGACATTAAAC
22573586 ATG
65 ATG
* * * ** * * * * * *
22573589 GGGTATGATGTGTAAGACTATAGCTCGGTTATGGTAATATACAGAGTCC--CCAAGACATTGAAC
1 GGGTATGATGTATAAGACCATAGCACGACTATGGCAACATAAAGAG-CCTACTAGGACATTAAAC
22573652 ATG
65 ATG
* * ** * * * * * * *
22573655 GGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACAGAGTCC-CCCAAGACATTGAAC
1 GGGTATGATGTATAAGACCATAGCACGACTATGGCAACATAAAGAG-CCTACTAGGACATTAAAC
22573719 ATG
65 ATG
* * * * *
22573722 GGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATAGAGAG-TTCACTAGGACATTAAAC
1 GGGTATGATGTATAAGACCATAGCACGACTATGGCAACATAAAGAGCCT-ACTAGGACATTAAAC
22573786 AT-
65 ATG
* * * * *
22573788 GTGTATGATTTATAAGACCATAGCACGACTATGATC-ACATAAAGAGCCTACTAGGATATTAAAA
1 GGGTATGATGTATAAGACCATAGCACGACTATG-GCAACATAAAGAGCCTACTAGGACATTAAAC
*
22573852 ATA
65 ATG
* * * * ** * * * * ** *
22573855 GGGCATGATGTGTAAAAACATAGCTTGGCTATGGCCACATAGAGAGACTGTTAGGATATTAAACA
1 GGGTATGATGTATAAGACCATAGCACGACTATGGCAACATAAAGAGCCTACTAGGACATTAAACA
22573920 TG
66 TG
* * * * *
22573922 GGGAATTATGTGTAAGACCATAGCTCAACTATG
1 GGGTATGATGTATAAGACCATAGCACGACTATG
22573955 ACAGATCATA
Statistics
Matches: 303, Mismatches: 56, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
66 117 0.39
67 186 0.61
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (67 bp):
GGGTATGATGTATAAGACCATAGCACGACTATGGCAACATAAAGAGCCTACTAGGACATTAAACA
TG
Found at i:22573954 original size:67 final size:66
Alignment explanation
Indices: 22573579--22573954 Score: 270
Period size: 67 Copynumber: 5.7 Consensus size: 66
22573569 CCTCCAAGAC
* ** ** * * * * *
22573579 ATTAAACATGGGGTATGATGTGTAAGACTATAGCTCGGTTATGGTAATATACAGAG-TCCCCAAG
1 ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCCACATAGAGAGCT-ACTAGG
*
22573643 AC
65 AT
* ** ** * * ** * *
22573645 ATTGAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACAGAGTCCCCCAAG
1 ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCCACATAGAGAG-CTACTAGG
*
22573710 AC
65 AT
* * * *
22573712 ATTGAACATGGGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATAGAGAGTTCACTAGG
1 ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCCACATAGAGAGCT-ACTAGG
*
22573777 AC
65 AT
* * * * ** *
22573779 ATTAAACAT-GTGTATGATTTATAAGACCATAGCACGACTATGATCACATAAAGAGCCTACTAGG
1 ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCCACATAGAGAG-CTACTAGG
22573843 AT
65 AT
* * * * * * * **
22573845 ATTAAAAATAGGGCATGATGTGTAAAAACATAGCTTGGCTATGGCCACATAGAGAGACTGTTAGG
1 ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCCACATAGAGAG-CTACTAGG
22573910 AT
65 AT
* * *
22573912 ATTAAACATGGGGAATTATGTGTAAGACCATAGCTCAACTATG
1 ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATG
22573955 ACAGATCATA
Statistics
Matches: 256, Mismatches: 49, Indels: 9
0.82 0.16 0.03
Matches are distributed among these distances:
66 106 0.41
67 150 0.59
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.26
Consensus pattern (66 bp):
ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCCACATAGAGAGCTACTAGGA
T
Found at i:22578669 original size:67 final size:67
Alignment explanation
Indices: 22578561--22578864 Score: 393
Period size: 67 Copynumber: 4.6 Consensus size: 67
22578551 AGGTTGTAAT
*
22578561 AGGTATAATGTGTAAGACCATAGCTCGACTAT-AGCAACATAGAAAGTCTGTCAGGACATTAAAC
1 AGGTATGATGTGTAAGACCATAGCTCGACTATGA-CAACATAGAAAGTCTGTCAGGACATTAAAC
22578625 ATG
65 ATG
* * * * **
22578628 AGGTATGATATGTAAGACCATAACTCAACTATGGCAACATAGGGAGTCTGTCAGGACATTAAACA
1 AGGTATGATGTGTAAGACCATAGCTCGACTATGACAACATAGAAAGTCTGTCAGGACATTAAACA
22578693 TG
66 TG
* *
22578695 GGGTATGATGTGTAAGACCATAGCTCGATTATGACAACATAGAGAA-TCTG-CTAGGACATTAAA
1 AGGTATGATGTGTAAGACCATAGCTCGACTATGACAACATAGA-AAGTCTGTC-AGGACATTAAA
22578758 CATG
64 CATG
* * * * * *
22578762 -GTGTATGATGTGTAAGACCATAGCTCG-GTATGACCACATAGAGAGTCTGTGAGAATATTAAAC
1 AG-GTATGATGTGTAAGACCATAGCTCGACTATGACAACATAGAAAGTCTGTCAGGACATTAAAC
22578825 ATG
65 ATG
*
22578828 GGGTATGATGTGTAAGACCATAGCTCGACTATGACAA
1 AGGTATGATGTGTAAGACCATAGCTCGACTATGACAA
22578865 ATACAGAGTT
Statistics
Matches: 206, Mismatches: 23, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
65 1 0.00
66 57 0.28
67 147 0.71
68 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (67 bp):
AGGTATGATGTGTAAGACCATAGCTCGACTATGACAACATAGAAAGTCTGTCAGGACATTAAACA
TG
Found at i:22596193 original size:6 final size:6
Alignment explanation
Indices: 22596176--22596219 Score: 70
Period size: 6 Copynumber: 7.2 Consensus size: 6
22596166 ACCCTTCTTC
*
22596176 TCCCCTT TCCCCT TCCCCT TCCCCT TCCCTT TCCCCT TCCCCT T
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT T
22596220 GGGTTGAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 30 0.86
7 5 0.14
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (6 bp):
TCCCCT
Found at i:22596307 original size:25 final size:25
Alignment explanation
Indices: 22596279--22596328 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
22596269 CAGGTAAGGC
*
22596279 TCCTTCTCCTTCTTCCATTCTTCAT
1 TCCTTCTCCTTCTTCCATTCATCAT
* * *
22596304 TCCTTTTTCTTCTTCCGTTCATCAT
1 TCCTTCTCCTTCTTCCATTCATCAT
22596329 CTTCTCTTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.08, C:0.36, G:0.02, T:0.54
Consensus pattern (25 bp):
TCCTTCTCCTTCTTCCATTCATCAT
Found at i:22600078 original size:21 final size:21
Alignment explanation
Indices: 22600054--22600095 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
22600044 ATCTCACTAT
*
22600054 TACAGTATCCAATCTCACCGC
1 TACAGTAACCAATCTCACCGC
*
22600075 TACAGTAACTAATCTCACCGC
1 TACAGTAACCAATCTCACCGC
22600096 CACCGTTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.36, G:0.10, T:0.24
Consensus pattern (21 bp):
TACAGTAACCAATCTCACCGC
Found at i:22621846 original size:21 final size:21
Alignment explanation
Indices: 22621822--22621876 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
22621812 CTTTACTTTA
*
22621822 TGTTTAGCTCTTTCGAGCTTC
1 TGTTTAGCTCTTACGAGCTTC
22621843 TGTTTAGCTCTTACGAGCTTC
1 TGTTTAGCTCTTACGAGCTTC
*
22621864 TGTTTAACTCTTA
1 TGTTTAGCTCTTA
22621877 TCAGTTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.15, C:0.22, G:0.16, T:0.47
Consensus pattern (21 bp):
TGTTTAGCTCTTACGAGCTTC
Found at i:22625886 original size:21 final size:24
Alignment explanation
Indices: 22625862--22625907 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
22625852 TGCTTTTAAC
22625862 TAATCA-TTTTAAAT-TA-AATTA
1 TAATCATTTTTAAATGTATAATTA
*
22625883 TAATTATTTTTAAATGTATAATTA
1 TAATCATTTTTAAATGTATAATTA
22625907 T
1 T
22625908 CACAATTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 5 0.24
22 8 0.38
23 2 0.10
24 6 0.29
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
TAATCATTTTTAAATGTATAATTA
Found at i:22626024 original size:77 final size:77
Alignment explanation
Indices: 22625938--22626091 Score: 290
Period size: 77 Copynumber: 2.0 Consensus size: 77
22625928 ATTATCAAAC
22625938 TTTTTAACTAATATTTTTAAATTAAATTACAAATATTTGTAAACGTCAATTTAATAATACAATAA
1 TTTTTAACTAATATTTTTAAATTAAATTACAAATATTTGTAAACGTCAATTTAATAATACAATAA
22626003 AAAAATAAAAGG
66 AAAAATAAAAGG
* *
22626015 TTTTTAACTAATATTTTTAAATTAAATTACAAATATTTGTAAATGTCAATTTAATAATACGATAA
1 TTTTTAACTAATATTTTTAAATTAAATTACAAATATTTGTAAACGTCAATTTAATAATACAATAA
22626080 AAAAATAAAAGG
66 AAAAATAAAAGG
22626092 CTTTCTCATT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (77 bp):
TTTTTAACTAATATTTTTAAATTAAATTACAAATATTTGTAAACGTCAATTTAATAATACAATAA
AAAAATAAAAGG
Found at i:22627134 original size:20 final size:20
Alignment explanation
Indices: 22627073--22627137 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 20
22627063 ATAACGGTAA
22627073 ATTAAATTATAATTATTTTT
1 ATTAAATTATAATTATTTTT
* * **
22627093 AAATATGTAATTATCACAATTTTT
1 --AT-T-AAATTATAATTATTTTT
22627117 ATTAAATTATAATTATTTTT
1 ATTAAATTATAATTATTTTT
22627137 A
1 A
22627138 AATTTATAAC
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
20 14 0.42
21 1 0.03
22 4 0.12
23 1 0.03
24 13 0.39
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.54
Consensus pattern (20 bp):
ATTAAATTATAATTATTTTT
Found at i:22627138 original size:17 final size:18
Alignment explanation
Indices: 22627118--22627151 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22627108 ACAATTTTTA
*
22627118 TTAAA-TTATAATTATTT
1 TTAAATTTATAACTATTT
22627135 TTAAATTTATAACTATT
1 TTAAATTTATAACTATT
22627152 ACTCCTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAAATTTATAACTATTT
Found at i:22635600 original size:24 final size:24
Alignment explanation
Indices: 22635555--22635600 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
22635545 TATATGAAAT
* *
22635555 ATAAATTTTAAATTTTTTTAAACA
1 ATAAATATTAAATTTTTATAAACA
22635579 ATAAATATT-AATTATTTATAAA
1 ATAAATATTAAATT-TTTATAAA
22635601 ATTTAATTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
ATAAATATTAAATTTTTATAAACA
Found at i:22638593 original size:18 final size:17
Alignment explanation
Indices: 22638557--22638601 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
22638547 TTATTAATAT
**
22638557 AAAATTCATTTTTTTTA
1 AAAATTCATTTTTGATA
22638574 AAAATTCATTTTTGGATA
1 AAAATTCATTTTT-GATA
22638592 AAAA-TCATTT
1 AAAATTCATTT
22638602 AAAAGTGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 19 0.76
18 6 0.24
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (17 bp):
AAAATTCATTTTTGATA
Found at i:22638738 original size:28 final size:29
Alignment explanation
Indices: 22638707--22638776 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 29
22638697 TTTTCTCTTT
* * *
22638707 TCAA-TTTTTAGATTTAGAATTAAATTGA
1 TCAATTTTTTAAAATTAGAACTAAATTGA
22638735 TCAATTTTTTAAAATTAGAACTAAATT-A
1 TCAATTTTTTAAAATTAGAACTAAATTGA
* *
22638763 TAAATATTTTAAAA
1 TCAATTTTTTAAAA
22638777 ATGTTTCAGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
28 17 0.47
29 19 0.53
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (29 bp):
TCAATTTTTTAAAATTAGAACTAAATTGA
Found at i:22638867 original size:62 final size:63
Alignment explanation
Indices: 22638739--22638867 Score: 154
Period size: 64 Copynumber: 2.0 Consensus size: 63
22638729 AATTGATCAA
* ** * * *
22638739 TTTTTTAAAATTAGAACTAAATTATAAATATTTTAAAAATGTTTCAGGTTAAATTTATTGATTT
1 TTTTTTAAAATTAGAACTAAATGATAAATATTTTAAAAA-GTTGAAGGCTAAATTTATTAAATT
* *
22638803 TTTTTTAAAATTAGAACTAAATGATAAAT-TTTGTAAACA-TTGAAGGCTAAATTTGTTAAATT
1 TTTTTTAAAATTAGAACTAAATGATAAATATTT-TAAAAAGTTGAAGGCTAAATTTATTAAATT
22638865 TTT
1 TTT
22638868 AGATTTAAGA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
62 20 0.36
63 3 0.05
64 33 0.59
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (63 bp):
TTTTTTAAAATTAGAACTAAATGATAAATATTTTAAAAAGTTGAAGGCTAAATTTATTAAATT
Found at i:22647257 original size:3 final size:3
Alignment explanation
Indices: 22647249--22647302 Score: 54
Period size: 3 Copynumber: 17.0 Consensus size: 3
22647239 TGTTAAATTG
* **
22647249 TTA TTA TTA CTGTA TTA TTA TTA GTA TTTA TTA TTA TTA TTA TGG TTA
1 TTA TTA TTA -T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
22647297 TTA TTA
1 TTA TTA
22647303 CCATTTTAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
3 36 0.86
4 4 0.10
5 2 0.05
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:22647472 original size:18 final size:18
Alignment explanation
Indices: 22647435--22647468 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22647425 TACATATATT
*
22647435 TACATTTTATAATATTTA
1 TACATTTTACAATATTTA
22647453 TACATTTT-CAATATTT
1 TACATTTTACAATATTT
22647469 TATAATCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (18 bp):
TACATTTTACAATATTTA
Found at i:22647615 original size:51 final size:51
Alignment explanation
Indices: 22647558--22647661 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
22647548 TTTCATATAT
22647558 TTTTACATATACCTATATGCCCATATTTTCATAATTATTAATATATTATGC
1 TTTTACATATACCTATATGCCCATATTTTCATAATTATTAATATATTATGC
*
22647609 TTTTACATATACGTATATGCCCATATTTTCATAATTATTAATATATTATGC
1 TTTTACATATACCTATATGCCCATATTTTCATAATTATTAATATATTATGC
22647660 TT
1 TT
22647662 ACATTTTTAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.33, C:0.14, G:0.05, T:0.48
Consensus pattern (51 bp):
TTTTACATATACCTATATGCCCATATTTTCATAATTATTAATATATTATGC
Found at i:22648653 original size:31 final size:33
Alignment explanation
Indices: 22648594--22648654 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 33
22648584 GGTTTTGACA
* *
22648594 TATATCATATTTTTATGTCTTTTTAAATTAAAT
1 TATATCATATTTTTAAGTCTTTTAAAATTAAAT
*
22648627 TATAT-ATTTTTTTAAGT-TTTTAAAATTA
1 TATATCATATTTTTAAGTCTTTTAAAATTA
22648655 TAGAAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 10 0.40
32 10 0.40
33 5 0.20
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (33 bp):
TATATCATATTTTTAAGTCTTTTAAAATTAAAT
Found at i:22656802 original size:16 final size:16
Alignment explanation
Indices: 22656781--22656816 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
22656771 CTTTTTTGTA
* *
22656781 AATTTATAATAAATTC
1 AATTTATAAGAAATGC
22656797 AATTTATAAGAAATGC
1 AATTTATAAGAAATGC
22656813 AATT
1 AATT
22656817 ACTTAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (16 bp):
AATTTATAAGAAATGC
Found at i:22661312 original size:5 final size:5
Alignment explanation
Indices: 22661302--22661332 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
22661292 TGAGCATTCG
*
22661302 ATCGA ATCGA ATCGA ATCGA ATTGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
22661333 AATTTTCGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (5 bp):
ATCGA
Found at i:22662139 original size:9 final size:9
Alignment explanation
Indices: 22662122--22662158 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
22662112 TATAGTTTGA
*
22662122 TATTTGAAT
1 TATTCGAAT
22662131 TATTCGAAT
1 TATTCGAAT
*
22662140 TATTCGAGT
1 TATTCGAAT
22662149 TATTCGAAT
1 TATTCGAAT
22662158 T
1 T
22662159 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:22673960 original size:4 final size:4
Alignment explanation
Indices: 22673951--22673992 Score: 61
Period size: 4 Copynumber: 11.0 Consensus size: 4
22673941 TAGAAATTAT
*
22673951 ATAA ATAA ATAA ATAA ATAA ATAA AT-A A-AA ATAA ATCA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
22673993 CATGCAAAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 4 0.12
4 30 0.88
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:22674213 original size:32 final size:30
Alignment explanation
Indices: 22674124--22674222 Score: 103
Period size: 28 Copynumber: 3.3 Consensus size: 30
22674114 ACAAAATATA
* * *
22674124 TACATGTACATATATAAAAAAAATTAT-A-
1 TACATATATATATATAAAAAAAATAATAAT
* * * *
22674152 TACATATATATAGATTATAAAAATGATAAT
1 TACATATATATATATAAAAAAAATAATAAT
22674182 TACATATATATATATAAACAAATAATAATAAT
1 TACATATATATATATAAA-AAA-AATAATAAT
22674214 TACATATAT
1 TACATATAT
22674223 TAAAATTAAT
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
28 21 0.37
29 1 0.02
30 15 0.26
31 3 0.05
32 17 0.30
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (30 bp):
TACATATATATATATAAAAAAAATAATAAT
Found at i:22675744 original size:44 final size:45
Alignment explanation
Indices: 22675596--22675759 Score: 137
Period size: 44 Copynumber: 3.8 Consensus size: 45
22675586 TTGCTTTCTT
* *
22675596 TAATCCTCTCCACTGCAACTTCAGGGAGATAAGA-CTA-GA--TGC
1 TAATCCACTCCACTGCAACTTCAGAGAGATAAGATCTATGAGCT-C
* * * ** *
22675638 -GATCTACT-CTCTGCAACTTCAGAGAGATAAGATCTATGATTTT
1 TAATCCACTCCACTGCAACTTCAGAGAGATAAGATCTATGAGCTC
*
22675681 TAATCCACTCCACTGCAACTTCAGAGAGATAGGAT-TATTG-GCTC
1 TAATCCACTCCACTGCAACTTCAGAGAGATAAGATCTA-TGAGCTC
** * *
22675725 TAATCTGCTCCACTGCAACTTCAGGGAGATGAGAT
1 TAATCCACTCCACTGCAACTTCAGAGAGATAAGAT
22675760 TTGTCGTCTT
Statistics
Matches: 97, Mismatches: 18, Indels: 12
0.76 0.14 0.09
Matches are distributed among these distances:
40 22 0.23
41 8 0.08
42 2 0.02
44 40 0.41
45 25 0.26
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (45 bp):
TAATCCACTCCACTGCAACTTCAGAGAGATAAGATCTATGAGCTC
Found at i:22675987 original size:44 final size:45
Alignment explanation
Indices: 22675812--22676319 Score: 396
Period size: 44 Copynumber: 11.6 Consensus size: 45
22675802 GACTGGATAT
* * * * * *
22675812 GATCTGCTATTTTTGATCTACTTCACTGCCAATACATGAATACAA
1 GATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAA
** * * * * * * *
22675857 GATCTATTTTCTTCGATCTACTTCGCCACTAGTATGGGAAGATAA
1 GATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAA
* * * *
22675902 GATCTGCTATCTTCAATCCACTTCGCTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAA
* * * * * *
22675947 GATTTGCTTTCTTCGATCTATTTCAC-GCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAA
* * * *
22675991 GATCTAC-ATCTTCGATCCACTTCGCTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAA
* * *
22676035 GATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAA
* ** * * *
22676079 GATTTAATTTCTTCGATCTACTTCACTACCAGTATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAA
* * *
22676124 GATCTAC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAA
* * * * *
22676167 GACCTGCTATATTCGATCTACTTCA-TGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAA
* * * * * *
22676211 TATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGAC-A
1 GATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAA
* *
22676255 -A---G--ATCTTCGATCCACTTC-CTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAA
* * * *
22676293 GATCTACTATTTTCAATCTACTCCACT
1 GATCTGCTATCTTCGATCTACTTCACT
22676320 GCTGCTCAGG
Statistics
Matches: 350, Mismatches: 99, Indels: 28
0.73 0.21 0.06
Matches are distributed among these distances:
37 16 0.05
38 13 0.04
39 1 0.00
40 1 0.00
43 37 0.11
44 150 0.43
45 132 0.38
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (45 bp):
GATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAA
Found at i:22676164 original size:132 final size:132
Alignment explanation
Indices: 22675866--22676314 Score: 527
Period size: 132 Copynumber: 3.4 Consensus size: 132
22675856 AGATCTATTT
* * * * * * * * * *
22675866 TCTTCGATCTACTTCGCCACTAGTATGGGAAGATAAGATCTGCTATCTTCAATCCACTTCGCTAC
1 TCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTCAATCTACTTCAC-GC
* * * * * ***
22675931 CAATATAGGAAGACAGGATTTGCTTTCTTCGATCTATTTCACGCCAATACATGAAGACAAGATCT
65 CAATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTCACACCAATATGGGAAGACAAGATCT
22675996 ACA
130 ACA
*
22675999 TCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCC
1 TCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTCAATCTACTTCACGCC
** *
22676064 AATACATGAAGACAAGATTTAATTTCTTCGATCTACTTCACTACCAGTATGGGAAGACAAGATCT
66 AATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTCAC-ACCAATATGGGAAGACAAGATCT
22676129 ACA
130 ACA
* * * *
22676132 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGACCTGCTATATTCGATCTACTTCATGCC
1 TCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTCAATCTACTTCACGCC
* * * *
22676196 AATACATGAAGACAATATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGACAAG----
66 AATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTC-ACACCAATATGGGAAGACAAGATCT
22676257 --A
130 ACA
* *
22676258 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTACTATTTTCAATCTACT
1 TCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTCAATCTACT
22676315 CCACTGCTGC
Statistics
Matches: 278, Mismatches: 36, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
126 54 0.19
132 135 0.49
133 89 0.32
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (132 bp):
TCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTCAATCTACTTCACGCC
AATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTCACACCAATATGGGAAGACAAGATCTA
CA
Found at i:22676281 original size:37 final size:38
Alignment explanation
Indices: 22676220--22676297 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 38
22676210 ATATCTGCTT
* * *
22676220 TCTTTGATCTACTTCGCCACCAATATGGGAAGACAAGA
1 TCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGA
* *
22676258 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGA
1 TCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGA
22676295 TCT
1 TCT
22676298 ACTATTTTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
37 22 0.63
38 13 0.37
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (38 bp):
TCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGA
Found at i:22677188 original size:25 final size:26
Alignment explanation
Indices: 22677150--22677198 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
22677140 GTGTCTTGAA
22677150 AAGAAAAAGATATT-CAAGAACAATG
1 AAGAAAAAGATATTACAAGAACAATG
22677175 AAGAATAAAG-TATTACAAGAACAA
1 AAGAA-AAAGATATTACAAGAACAA
22677199 ATATATGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.61, C:0.08, G:0.14, T:0.16
Consensus pattern (26 bp):
AAGAAAAAGATATTACAAGAACAATG
Found at i:22696162 original size:25 final size:26
Alignment explanation
Indices: 22696110--22696191 Score: 73
Period size: 25 Copynumber: 3.2 Consensus size: 26
22696100 ATACACTGTA
* *
22696110 GCTC-TTATGAGCGTCCCGA-TATATG
1 GCTCTTTATGAGCTTCCCGATTA-AAG
22696135 GCT-TTT-TGGAGCTTCCCGATTAAAG
1 GCTCTTTAT-GAGCTTCCCGATTAAAG
* *
22696160 GCTCTTTCATGAGCTTCCTGATTAATG
1 GCTCTTT-ATGAGCTTCCCGATTAAAG
22696187 GCTCT
1 GCTCT
22696192 CCGGAGCTTC
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
24 1 0.02
25 20 0.43
26 5 0.11
27 20 0.43
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
GCTCTTTATGAGCTTCCCGATTAAAG
Found at i:22696269 original size:25 final size:25
Alignment explanation
Indices: 22696241--22696310 Score: 61
Period size: 25 Copynumber: 2.8 Consensus size: 25
22696231 TATGACTTTT
*
22696241 ATGAGCTTCTTATTACATGGCTCAC
1 ATGAGCTTCCTATTACATGGCTCAC
* * *
22696266 ATGAGTTTCCTGTTATATGGCTCGA-
1 ATGAGCTTCCTATTACATGGCTC-AC
* *
22696291 AAGAGCTTCCCATTTACATG
1 ATGAGCTTCCTA-TTACATG
22696311 TTTGCATGAG
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
25 27 0.79
26 7 0.21
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (25 bp):
ATGAGCTTCCTATTACATGGCTCAC
Found at i:22698693 original size:20 final size:20
Alignment explanation
Indices: 22698668--22698710 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
22698658 CCATTAAATA
* *
22698668 TTATTTATAAGATTATAATT
1 TTATTTACAAAATTATAATT
*
22698688 TTATTTACAAAATTATTATT
1 TTATTTACAAAATTATAATT
22698708 TTA
1 TTA
22698711 ATAAATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (20 bp):
TTATTTACAAAATTATAATT
Found at i:22703866 original size:14 final size:14
Alignment explanation
Indices: 22703834--22703876 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
22703824 ATGATTATTT
22703834 AATTAT-CATAAAA
1 AATTATACATAAAA
*
22703847 ACATTATACATAATA
1 A-ATTATACATAAAA
22703862 AATTATA-ATAAAA
1 AATTATACATAAAA
22703875 AA
1 AA
22703877 AGATTTAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 8 0.31
14 11 0.42
15 7 0.27
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (14 bp):
AATTATACATAAAA
Found at i:22707764 original size:30 final size:30
Alignment explanation
Indices: 22707686--22707769 Score: 100
Period size: 29 Copynumber: 2.8 Consensus size: 30
22707676 GGGTAACTTC
* **
22707686 GATATAATGCCAACTTGTGTGAGCAACTTT
1 GATATAATGTCAACTTGTGTGAGCAACCCT
*
22707716 GTTA-AATGT-AAGCTTGTGTGAGCAACCCT
1 GATATAATGTCAA-CTTGTGTGAGCAACCCT
*
22707745 GATATATTGTCAACTTGTGTGAGCA
1 GATATAATGTCAACTTGTGTGAGCA
22707770 TTATATTCCA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
28 2 0.04
29 22 0.49
30 19 0.42
31 2 0.04
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (30 bp):
GATATAATGTCAACTTGTGTGAGCAACCCT
Found at i:22717062 original size:19 final size:20
Alignment explanation
Indices: 22717040--22717082 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
22717030 TTTAACCATT
* *
22717040 TTTTATTTTTTGTATT-TAA
1 TTTTATTTGTTCTATTCTAA
22717059 TTTTATTTGTTCTATTCTAA
1 TTTTATTTGTTCTATTCTAA
22717079 TTTT
1 TTTT
22717083 TTTCGTTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.72
Consensus pattern (20 bp):
TTTTATTTGTTCTATTCTAA
Found at i:22732804 original size:12 final size:12
Alignment explanation
Indices: 22732787--22732819 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
22732777 CTTTTGAATT
22732787 AAAAAAAATTTG
1 AAAAAAAATTTG
22732799 AAAAAAAA-TTG
1 AAAAAAAATTTG
22732810 AAAGAAAAAT
1 AAA-AAAAAT
22732820 AAATAAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 6 0.32
12 13 0.68
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (12 bp):
AAAAAAAATTTG
Found at i:22738930 original size:6 final size:6
Alignment explanation
Indices: 22738919--22738957 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
22738909 NNNNNNNNNN
22738919 TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT TTT
1 TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT TTT
22738958 TTATTTCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTGTT
Found at i:22753537 original size:21 final size:21
Alignment explanation
Indices: 22753483--22753539 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 21
22753473 TTCAAAATTT
* *
22753483 TATAAAAA-ATTAATTTTTTC
1 TATAAAAATATTAAATTTCTC
**
22753503 TAT-AAAATCCTAAATTTCTC
1 TATAAAAATATTAAATTTCTC
*
22753523 TATAAAAATGTTAAATT
1 TATAAAAATATTAAATT
22753540 ATCAAATCAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.46, C:0.09, G:0.02, T:0.44
Consensus pattern (21 bp):
TATAAAAATATTAAATTTCTC
Found at i:22759222 original size:36 final size:36
Alignment explanation
Indices: 22759175--22759243 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
22759165 TCATAAGAGA
22759175 AGTATGGTGGGTGAATTGTCAGACTTTCTTAGGATG
1 AGTATGGTGGGTGAATTGTCAGACTTTCTTAGGATG
* * *
22759211 AGTATGGTGGGTGAATTGTTATACTTTTTTAGG
1 AGTATGGTGGGTGAATTGTCAGACTTTCTTAGG
22759244 TTCCAAATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.22, C:0.06, G:0.32, T:0.41
Consensus pattern (36 bp):
AGTATGGTGGGTGAATTGTCAGACTTTCTTAGGATG
Found at i:22771010 original size:17 final size:17
Alignment explanation
Indices: 22770976--22771010 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
22770966 TTAAATATTT
*
22770976 ATATTATTATTTAAAAA
1 ATATTATTATTAAAAAA
22770993 ATATTATTATTAAAAAA
1 ATATTATTATTAAAAAA
22771010 A
1 A
22771011 GCACTACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATTATTATTAAAAAA
Found at i:22773902 original size:102 final size:103
Alignment explanation
Indices: 22773711--22773945 Score: 364
Period size: 102 Copynumber: 2.3 Consensus size: 103
22773701 NNNNNNNNCA
* * *
22773711 ATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAGGGGGTTGCTAAGTGCTGA
1 ATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAAGGGGGTTGCTAAGTGCTGA
* *
22773776 TTCCCCCGAGGGGTTGCTAAGTGCTAATTCCCCTATTC
66 TTCCCCCAAGGGGTTGCTAAGTGCTAATTCCCCGATTC
22773814 ATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTG-AAGGGGGTTGCTAAGTGCTGA
1 ATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAAGGGGGTTGCTAAGTGCTGA
** *
22773878 TTCCCCCAAGGGGTTGCTGTGTGCTGATTCCCCGATTC
66 TTCCCCCAAGGGGTTGCTAAGTGCTAATTCCCCGATTC
* * *
22773916 ATTGGTGGCTGCTAAGTGCGGAATCCACCG
1 ATTGGTGGTTGCTAAGTGCTGATTCCACCG
22773946 ATAACGATTA
Statistics
Matches: 121, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
102 81 0.67
103 40 0.33
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (103 bp):
ATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAAGGGGGTTGCTAAGTGCTGA
TTCCCCCAAGGGGTTGCTAAGTGCTAATTCCCCGATTC
Found at i:22777181 original size:24 final size:25
Alignment explanation
Indices: 22777144--22777190 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
22777134 ATTGTGCCAT
*
22777144 CTTATGTTGCATGTTT-TGAAATGG
1 CTTATGTGGCATGTTTGTGAAATGG
*
22777168 CTTATGTGGTATGTTTGTGAAAT
1 CTTATGTGGCATGTTTGTGAAAT
22777191 CTTGAATGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.21, C:0.06, G:0.26, T:0.47
Consensus pattern (25 bp):
CTTATGTGGCATGTTTGTGAAATGG
Found at i:22784372 original size:23 final size:23
Alignment explanation
Indices: 22784337--22784387 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
22784327 ACCTACTTTC
* * *
22784337 TTACTGTAATAATTTTTGGGGTA
1 TTACAGTAATAATTTTTGAGATA
*
22784360 TTACAGTAGTAATTTTTGAGATA
1 TTACAGTAATAATTTTTGAGATA
22784383 TTACA
1 TTACA
22784388 TTTCTCTCCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.31, C:0.06, G:0.18, T:0.45
Consensus pattern (23 bp):
TTACAGTAATAATTTTTGAGATA
Found at i:22785670 original size:50 final size:54
Alignment explanation
Indices: 22785595--22785719 Score: 195
Period size: 56 Copynumber: 2.4 Consensus size: 54
22785585 CTTTTAGGTA
22785595 TCCCAGACATGGTCTTACATGGGACCTCTC-ATCTC-A-G-TGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCAATCTCAATGATGCCAATGCCATG
22785645 TCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTC--AATCTCAATGATGCCAATGCCATG
*
22785701 TCCCAAACATGGTCTTACA
1 TCCCAGACATGGTCTTACA
22785720 CTGGCTCAAA
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
50 30 0.44
53 5 0.07
54 1 0.01
55 1 0.01
56 31 0.46
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (54 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCAATCTCAATGATGCCAATGCCATG
Found at i:22786584 original size:168 final size:170
Alignment explanation
Indices: 22786294--22786631 Score: 619
Period size: 168 Copynumber: 2.0 Consensus size: 170
22786284 TAATTTTTTT
22786294 TCAGCATTATTGGAAACAACTCGGTTAGAAGTCATCTCTGTCTTACAAAACAATTTCATTGGAGT
1 TCAGCATTATTGGAAACAACTCGGTTAGAAGTCATCTCTGTCTTACAAAACAATTTCATTGGAGT
*
22786359 CGGAAGATATTACATTATCACGAGTAATAATATGGCATGTATAGCTAAACTCACATACACTATGT
66 CGGAAGATATTACATTATCACGAGTAAAAATATGGCATGTATAGCTAAACTCACATACACTATGT
22786424 TAGTCCGAGAA-TCAACTAAACCATAGCTCTGATACCACTA
131 TAGTCCGAGAACT-AACTAAACCATAGCTCTGATACCACTA
22786464 TCAGCATTA-T-GAAACAACTCGGTTAGAAGTCATCTCTGTCTTACAAAACAATTTCATTGGAGT
1 TCAGCATTATTGGAAACAACTCGGTTAGAAGTCATCTCTGTCTTACAAAACAATTTCATTGGAGT
*
22786527 CGGAAGATATTACATTATCACGAGTAAAAATATGGCATGTATAGCTAAACTCACATACGCTATGT
66 CGGAAGATATTACATTATCACGAGTAAAAATATGGCATGTATAGCTAAACTCACATACACTATGT
*
22786592 TAGTCCGAGAACTGACTAAACCATAGCTCTGATACCACTA
131 TAGTCCGAGAACTAACTAAACCATAGCTCTGATACCACTA
22786632 AATGTAACAC
Statistics
Matches: 164, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
168 153 0.93
169 2 0.01
170 9 0.05
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (170 bp):
TCAGCATTATTGGAAACAACTCGGTTAGAAGTCATCTCTGTCTTACAAAACAATTTCATTGGAGT
CGGAAGATATTACATTATCACGAGTAAAAATATGGCATGTATAGCTAAACTCACATACACTATGT
TAGTCCGAGAACTAACTAAACCATAGCTCTGATACCACTA
Done.