Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26558743
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1281270 characters in sequence are not A, C, G, or T
File 78 of 79
Found at i:26137026 original size:2 final size:2
Alignment explanation
Indices: 26137021--26137045 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26137011 CCTCACTTAC
26137021 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
26137046 ATAAAAGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26144181 original size:203 final size:204
Alignment explanation
Indices: 26143832--26144238 Score: 807
Period size: 203 Copynumber: 2.0 Consensus size: 204
26143822 GTACGGAATT
26143832 TGGGTTTGGATTTCTTAAGGCCCATATATGTTTGTTGGAAAGGCTAATATGGGCTCCTAATGAAT
1 TGGGTTTGGATTTCTTAAGGCCCATATATGTTTGTTGGAAAGGCTAATATGGGCTCCTAATGAAT
26143897 TCTTTTAGAAAAGTATAATGGAAAATTTAATCCCTAATCTTTGGATATGATTTAAGGGTTAGTAG
66 TCTTTTAGAAAAGTATAATGGAAAATTTAATCCCTAATCTTTGGATATGATTTAAGGGTTAGTAG
26143962 CTCGCCTAGTCCAGTCCGATTTGGGTTGGGTTTGGACAATGATTTTTATACTTAGCGCAAATT-A
131 CTCGCCTAGTCCAGTCCGATTTGGGTTGGGTTTGGACAATGATTTTTATACTTAGCGCAAATTCA
26144026 ATTTAAATG
196 ATTTAAATG
26144035 TGGGTTTGGATTTCTTAAGGCCCATATATGTTTGTTGGAAAGGCTAATATGGGCTCCTAATGAAT
1 TGGGTTTGGATTTCTTAAGGCCCATATATGTTTGTTGGAAAGGCTAATATGGGCTCCTAATGAAT
26144100 TCTTTTAGAAAAGTATAATGGAAAATTTAATCCCTAATCTTTGGATATGATTTAAGGGTTAGTAG
66 TCTTTTAGAAAAGTATAATGGAAAATTTAATCCCTAATCTTTGGATATGATTTAAGGGTTAGTAG
26144165 CTCGCCTAGTCCAGTCCGATTTGGGTTGGGTTTGGACAATGATTTTTATACTTAGCGCAAATTCA
131 CTCGCCTAGTCCAGTCCGATTTGGGTTGGGTTTGGACAATGATTTTTATACTTAGCGCAAATTCA
26144230 ATTTAAATG
196 ATTTAAATG
26144239 ATAAAAAATT
Statistics
Matches: 203, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
203 193 0.95
204 10 0.05
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (204 bp):
TGGGTTTGGATTTCTTAAGGCCCATATATGTTTGTTGGAAAGGCTAATATGGGCTCCTAATGAAT
TCTTTTAGAAAAGTATAATGGAAAATTTAATCCCTAATCTTTGGATATGATTTAAGGGTTAGTAG
CTCGCCTAGTCCAGTCCGATTTGGGTTGGGTTTGGACAATGATTTTTATACTTAGCGCAAATTCA
ATTTAAATG
Found at i:26149042 original size:147 final size:148
Alignment explanation
Indices: 26148775--26149069 Score: 583
Period size: 147 Copynumber: 2.0 Consensus size: 148
26148765 ATCGTGAATG
26148775 TACTATAATTTAATATTATTTGTAATTGTACTCGTAAACTTCTTAAACATATTTCTTTATAGAAT
1 TACTATAATTTAATATTATTTGTAATTGTACTCGTAAACTTCTTAAACATATTTCTTTATAGAAT
26148840 AAAATATAATATTAGATTCGTTTATATTGATTATAAAAGTTATTTATTTGGATTTTTTAAAATTT
66 AAAATATAATATTAGATTCGTTTATATTGATTATAAAAGTTATTTATTTGGATTTTTTAAAATTT
26148905 AATG-AAAATATATAATT
131 AATGAAAAATATATAATT
26148922 TACTATAATTTAATATTATTTGTAATTGTACTCGTAAACTTCTTAAACATATTTCTTTATAGAAT
1 TACTATAATTTAATATTATTTGTAATTGTACTCGTAAACTTCTTAAACATATTTCTTTATAGAAT
26148987 AAAATATAATATTAGATTCGTTTATATTGATTATAAAAGTTATTTATTTGGATTTTTTAAAATTT
66 AAAATATAATATTAGATTCGTTTATATTGATTATAAAAGTTATTTATTTGGATTTTTTAAAATTT
26149052 AATGAAAAATATATAATT
131 AATGAAAAATATATAATT
26149070 AAAAAATAAA
Statistics
Matches: 147, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
147 134 0.91
148 13 0.09
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.47
Consensus pattern (148 bp):
TACTATAATTTAATATTATTTGTAATTGTACTCGTAAACTTCTTAAACATATTTCTTTATAGAAT
AAAATATAATATTAGATTCGTTTATATTGATTATAAAAGTTATTTATTTGGATTTTTTAAAATTT
AATGAAAAATATATAATT
Found at i:26149206 original size:22 final size:22
Alignment explanation
Indices: 26149181--26149225 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
26149171 TCAAAAGGAA
26149181 CCTTAAATAAACCCACTTTGTG
1 CCTTAAATAAACCCACTTTGTG
26149203 CCTTAAATAAACCCACTTTGTG
1 CCTTAAATAAACCCACTTTGTG
26149225 C
1 C
26149226 AAAGCAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (22 bp):
CCTTAAATAAACCCACTTTGTG
Found at i:26153839 original size:72 final size:74
Alignment explanation
Indices: 26153683--26153840 Score: 230
Period size: 72 Copynumber: 2.1 Consensus size: 74
26153673 CTTCGATGCT
* * *
26153683 TCGTCTTTCTTGAGATATTTGTGTTCGATTTTCAATTCATTCTTGGGATTCTTTAACCTCGGCTT
1 TCGTCCTTCTTGAGATACTTGTGTTCGATTTTCAATTCA-TC-TGAGATTCTTTAACCTCGGCTT
* *
26153748 TCTTCGAGGCT
64 TCTTCAAGGCC
*
26153759 TCGTCCTTCTTGAGATACTTGTGTTCGATTTTCAGTTC-TC-GAGATTCTTTAACCTCGGCTTTC
1 TCGTCCTTCTTGAGATACTTGTGTTCGATTTTCAATTCATCTGAGATTCTTTAACCTCGGCTTTC
26153822 TTCAAGGCC
66 TTCAAGGCC
26153831 TCGTCCTTCT
1 TCGTCCTTCT
26153841 CGAGTTTGTC
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
72 39 0.51
74 2 0.03
76 35 0.46
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (74 bp):
TCGTCCTTCTTGAGATACTTGTGTTCGATTTTCAATTCATCTGAGATTCTTTAACCTCGGCTTTC
TTCAAGGCC
Found at i:26153862 original size:72 final size:72
Alignment explanation
Indices: 26153729--26153863 Score: 180
Period size: 72 Copynumber: 1.9 Consensus size: 72
26153719 TCATTCTTGG
* * * ** * *
26153729 GATTCTTTAACCTCGGCTTTCTTCGAGGCTTCGTCCTTCTTGAGATACTTGTGTTCGATTTTCAG
1 GATTCTTTAACCTCGGCTTTCTTCAAGGCCTCGTCCTTCTCGAGATACTCCTCTTCCATTTTCAG
26153794 TTCTCGA
66 TTCTCGA
* **
26153801 GATTCTTTAACCTCGGCTTTCTTCAAGGCCTCGTCCTTCTCGAGTTTGTCCTCTTCCATTTTC
1 GATTCTTTAACCTCGGCTTTCTTCAAGGCCTCGTCCTTCTCGAGATACTCCTCTTCCATTTTC
26153864 CTCTGTTTTA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
72 53 1.00
ACGTcount: A:0.13, C:0.27, G:0.17, T:0.43
Consensus pattern (72 bp):
GATTCTTTAACCTCGGCTTTCTTCAAGGCCTCGTCCTTCTCGAGATACTCCTCTTCCATTTTCAG
TTCTCGA
Found at i:26158190 original size:53 final size:53
Alignment explanation
Indices: 26158110--26158261 Score: 223
Period size: 53 Copynumber: 2.9 Consensus size: 53
26158100 AAGGATCGGA
* * * *
26158110 TTTTGGAGGACGTATTCCGCGTCTCGAATGTGAGAGTCGAGCCAATGACCGAC
1 TTTTGGAGGACGAATTTCGTGTCTCGAATGTGAGCGTCGAGCCAATGACCGAC
* * * *
26158163 TTTTGGAGGATGAATTTCGTGTCTCGAATGTGAGCGTTGAGCCAACGACCGGC
1 TTTTGGAGGACGAATTTCGTGTCTCGAATGTGAGCGTCGAGCCAATGACCGAC
*
26158216 TTTTGGAGGACGAATTTCGTGTCTCGAATGTGAGCGTCAAGCCAAT
1 TTTTGGAGGACGAATTTCGTGTCTCGAATGTGAGCGTCGAGCCAAT
26158262 CGGTTAAAAA
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 87 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (53 bp):
TTTTGGAGGACGAATTTCGTGTCTCGAATGTGAGCGTCGAGCCAATGACCGAC
Found at i:26162831 original size:4 final size:4
Alignment explanation
Indices: 26162822--26162880 Score: 118
Period size: 4 Copynumber: 14.8 Consensus size: 4
26162812 AACCAAAGAA
26162822 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
26162870 ATAC ATAC ATA
1 ATAC ATAC ATA
26162881 GCGTCACAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 55 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:26163060 original size:16 final size:16
Alignment explanation
Indices: 26163039--26163070 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
26163029 TAGACGAAAT
26163039 AAATACATAAAGCAAC
1 AAATACATAAAGCAAC
26163055 AAATACATAAAGCAAC
1 AAATACATAAAGCAAC
26163071 GGAGTCATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.19, G:0.06, T:0.12
Consensus pattern (16 bp):
AAATACATAAAGCAAC
Found at i:26164201 original size:29 final size:29
Alignment explanation
Indices: 26164151--26164207 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
26164141 TTTATTTTAA
** *
26164151 TTTAATTTTATATACTTAAAATATATTTT
1 TTTAATTTTATATAAATAAAATAAATTTT
26164180 TTTAATTTTATATTAAAT-AAATAAATTT
1 TTTAATTTTATA-TAAATAAAATAAATTT
26164208 ACCTATTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 21 0.88
30 3 0.12
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (29 bp):
TTTAATTTTATATAAATAAAATAAATTTT
Found at i:26167638 original size:39 final size:39
Alignment explanation
Indices: 26167606--26168261 Score: 737
Period size: 39 Copynumber: 17.1 Consensus size: 39
26167596 CTTCTCACTT
* * * **
26167606 TCTTCTAGTTCACGTGCCTCCTTCTCTTTCTTCTCTTTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
*
26167645 TCTTCTCGTTCAC--G-TGCC-TC-----CTTCTCTTTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
* *
26167675 TCTTCTCGTTCACGAGCTTCCTTCAATCTCTTCTCATTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
* *
26167714 TCTTCTCGTTCACGAGCTTCCTTCAATCTCTTCTCGTTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
* * *
26167753 TCTTCTTGTTCACGAGCTTCTTTCAACTTCTTCTCTTTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
* **
26167792 TCTTCTCGTTCACGTA-CCTCCTTCTCTTTCTTCTCTTTC
1 TCTTCTCGTTCACG-AGCTTCCTTCAATTTCTTCTCTTTC
* **
26167831 TCTTCTCGTTCACGAGCTTCCTTCAATCTCTTCTCAATC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
** * * *
26167870 TCTTCTCGTTCACGAATTTCCTTCAATCTCCTCTCATTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
26167909 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
*
26167948 TCTTCTAGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
* * * * *
26167987 TCTTCTCGTCCATGTGCCTCCTTC---TCCTTCTCTTTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
* * * * *
26168023 TCTTCTCGCTCACGAGCCTCCCTCAATCTCTTCTCATTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
*
26168062 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTATC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
* * * * *
26168101 TCTTCTCGTTCACGAGCCTCCCTCAATCTCCTCTCATTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
* * *
26168140 TCTTCTCGTTCATGAGCTTCCTTCAATTTTTTCTCCTTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
* * ** **
26168179 TCTTCTAGTTCACGTGCCACCTTCTCTTTCTTC-CTTCTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTT-TC
*
26168218 TCTTCTCGTTCATGAGCTTCCTTCAATTTCTTCTCTTTC
1 TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
26168257 TCTTC
1 TCTTC
26168262 CTGCTGAACA
Statistics
Matches: 519, Mismatches: 82, Indels: 32
0.82 0.13 0.05
Matches are distributed among these distances:
30 23 0.04
32 1 0.00
33 3 0.01
34 2 0.00
35 2 0.00
36 32 0.06
37 1 0.00
38 3 0.01
39 448 0.86
40 4 0.01
ACGTcount: A:0.10, C:0.36, G:0.08, T:0.46
Consensus pattern (39 bp):
TCTTCTCGTTCACGAGCTTCCTTCAATTTCTTCTCTTTC
Found at i:26167671 original size:30 final size:30
Alignment explanation
Indices: 26167635--26167698 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
26167625 CCTTCTCTTT
*
26167635 CTTCTCTTTCTCTTCTCGTTCACGTGCCTC
1 CTTCTCTTTCTCTTCTCGTTCACGAGCCTC
*
26167665 CTTCTCTTTCTCTTCTCGTTCACGAGCTTC
1 CTTCTCTTTCTCTTCTCGTTCACGAGCCTC
26167695 CTTC
1 CTTC
26167699 AATCTCTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.05, C:0.39, G:0.09, T:0.47
Consensus pattern (30 bp):
CTTCTCTTTCTCTTCTCGTTCACGAGCCTC
Found at i:26179921 original size:32 final size:32
Alignment explanation
Indices: 26179879--26179949 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
26179869 TTCAAATTAT
26179879 TTTAAATTATTTC-AGATTTG-TGTATTTTTAGA
1 TTTAAATTATTTCGAG-TTTGAT-TATTTTTAGA
* *
26179911 TTTAATTTATTTCGAGTTTGAATTATTTTTATA
1 TTTAAATTATTTCGAGTTTG-ATTATTTTTAGA
26179944 TTTAAA
1 TTTAAA
26179950 ATTCGACATA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
32 16 0.48
33 16 0.48
34 1 0.03
ACGTcount: A:0.30, C:0.03, G:0.10, T:0.58
Consensus pattern (32 bp):
TTTAAATTATTTCGAGTTTGATTATTTTTAGA
Found at i:26183801 original size:393 final size:392
Alignment explanation
Indices: 26182790--26183802 Score: 1427
Period size: 393 Copynumber: 2.6 Consensus size: 392
26182780 GAGACGAAGC
*
26182790 AATCAGAAAGTTCAACAAGATACAAAACTGGGAACTTTTACATCAATATCATTTTCAATAGGAAC
1 AATCAGAAAGTTCAACAAGATACAAAACTGGGAACTTTTACATCAATCTCATTTTCAATAGGAAC
* * *
26182855 AACAAAAATGGATGGATCAAGG---TTCGGTCATGAA-TTCTGAAGTCTTGTATCACTTTGAGAG
66 AACAAAAATGGATGGATCAAGGTTCTTCGGTCATGAATTTCTGAAGTCTCGTATTACTTCGAGAG
* * *
26182916 CTAGATAGTTACTAACCTATGAGATTCATATTTTCATTTATCATAAAAGCAACATGATCCAAAAT
131 CTAGATAATTACTAACCTATGAGATTCATATTTTTATTTATCATAAAAGCAACATGATCCAACAT
* * * *
26182981 GTAGTGAATTATAGCTTGTATTAAATGAACATACCAGTTTTGGTCATTAATCATACAAAATATAT
196 GTAGTGAATTATAGCTTATGTTAAATGAACATACCAGTTTTGGTCATTAATCATACAAAAGATAG
* * ** * *
26183046 TTTCATTATAAGTTTCTAGCGAATTCCAGCACTGTCACACAAAAAATTCTTAATTCTGAAGTTGC
261 TTTCATCATAAGTTTCTAGCGAACTCCAGCACCATCACACAAAAAATTCTTAATTCTGAACTTAC
* * *
26183111 ACAGAAAATTCAATTTAACCTCCTAACACACACATATGACGGAACAAAGGGAAGAGTCGAAGCAA
326 ACAGAAAATCCAATTTAACCTCCTAACACACACATATGACGGAACAAAGGGAAGAGACAAAGCAA
26183176 CT
391 CT
* * *
26183178 AATCAGAAAGTTTAACACGATACAGAAA-TGGGAAATTTTTTACATCAATCTCATTTTCAATAGG
1 AATCAGAAAGTTCAACAAGATACA-AAACTGGG-AA-CTTTTACATCAATCTCATTTTCAATAGG
* *
26183242 AACAACAAAAATGAATGGATCAAGGTTCGTTCGGTCATGAATTTCTGAAGTCTCTTATTACTTCG
63 AACAACAAAAATGGATGGATCAAGGTTC-TTCGGTCATGAATTTCTGAAGTCTCGTATTACTTCG
* * * *
26183307 AGAGCTAGATAATTACTAGA--TATGAGATGCATATTTTTATTCATCATGAGAGCAACATGATCC
127 AGAGCTAGATAATTACTA-ACCTATGAGATTCATATTTTTATTTATCATAAAAGCAACATGATCC
* * *
26183370 AACACGTAGTGAATTATAGCTTATGTTAAATGAACATACC-GCTTTTGGTCATTGATCATACACA
191 AACATGTAGTGAATTATAGCTTATGTTAAATGAACATACCAG-TTTTGGTCATTAATCATACAAA
* * *
26183434 AGATAGTTTCATCATAAGTTTCTAGCGAACTCCAGCCCCATCGCTC-AAAAATTCTTAATTCTGA
255 AGATAGTTTCATCATAAGTTTCTAGCGAACTCCAGCACCATCACACAAAAAATTCTTAATTCTGA
* * * *
26183498 ACTTACACAGAAACTCCAATTTAACTTGCTAACACACATATATGA-GAGAACAAAGGGAAGAGAC
320 ACTTACACAGAAAATCCAATTTAACCTCCTAACACACACATATGACG-GAACAAAGGGAAGAGAC
*
26183562 AAAGCAATT
384 AAAGCAACT
* ** *
26183571 ATTCAGAAAGTTCAACAAGATACAAAACT-GGAAGCTTTTACATTGATCTCATTTTCAGTAGGAA
1 AATCAGAAAGTTCAACAAGATACAAAACTGGGAA-CTTTTACATCAATCTCATTTTCAATAGGAA
*
26183635 CAACAAAAATGGATGGATCAAGGTTCATTCGGTCATGAATTTCTGAAGTCTCGTATTACTTCAAG
65 CAACAAAAATGGATGGATCAAGGTTC-TTCGGTCATGAATTTCTGAAGTCTCGTATTACTTCGAG
** *
26183700 AGCTAGATAATTACTAACCTATGAGATTCATATTTTTATTTGCCATAAAAGCAAACATAATCCAA
129 AGCTAGATAATTACTAACCTATGAGATTCATATTTTTATTTATCATAAAAGC-AACATGATCCAA
26183765 CATGTAGTGAATTATAGCTTATGTTAAATGAACATACC
193 CATGTAGTGAATTATAGCTTATGTTAAATGAACATACC
26183803 TTTAATCATA
Statistics
Matches: 550, Mismatches: 60, Indels: 25
0.87 0.09 0.04
Matches are distributed among these distances:
388 26 0.05
389 5 0.01
390 51 0.09
391 105 0.19
392 33 0.06
393 150 0.27
394 143 0.26
395 36 0.07
396 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (392 bp):
AATCAGAAAGTTCAACAAGATACAAAACTGGGAACTTTTACATCAATCTCATTTTCAATAGGAAC
AACAAAAATGGATGGATCAAGGTTCTTCGGTCATGAATTTCTGAAGTCTCGTATTACTTCGAGAG
CTAGATAATTACTAACCTATGAGATTCATATTTTTATTTATCATAAAAGCAACATGATCCAACAT
GTAGTGAATTATAGCTTATGTTAAATGAACATACCAGTTTTGGTCATTAATCATACAAAAGATAG
TTTCATCATAAGTTTCTAGCGAACTCCAGCACCATCACACAAAAAATTCTTAATTCTGAACTTAC
ACAGAAAATCCAATTTAACCTCCTAACACACACATATGACGGAACAAAGGGAAGAGACAAAGCAA
CT
Found at i:26194759 original size:15 final size:15
Alignment explanation
Indices: 26194739--26194770 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
26194729 ATGATGTAGT
26194739 ATCTTAAATGTAAAG
1 ATCTTAAATGTAAAG
26194754 ATCTTAAATGTAAAG
1 ATCTTAAATGTAAAG
26194769 AT
1 AT
26194771 ATTGCTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.34
Consensus pattern (15 bp):
ATCTTAAATGTAAAG
Found at i:26198840 original size:249 final size:250
Alignment explanation
Indices: 26198407--26198863 Score: 693
Period size: 249 Copynumber: 1.8 Consensus size: 250
26198397 ATAGATCGAA
* * * * *
26198407 ATTCTTTGTTCTTGAAAGGAAATGTATATTCCCGAAATGCAGCTTAGGTACAACAATCTCAACTT
1 ATTCTTTGTTCATAAAAGGAAATCTATATTCCCAAAATGCAGCTTAGGT--AACAATCTCAACTC
* * * *
26198472 TAAACTGCCCTATGTGAACAAAACCTAGTTATGGTCCAACAATAGTTTGGTCTTAATCTAAGACA
64 TAAACAGCCCTATGTGAACAAAACCTAGTTACGGTCCAACAATAGGTTGGTCTTAAACTAAGACA
**
26198537 AAACACATAATTTCTCAGCTAAAGACTGCCCTATGTATTTTCCAACCGTGCCATGTCTGGAAATT
129 AAACACA-AATTTCTCAGCTAAAGACTGCCCTATGTATTTTCCAACCGTGCCATGTCCAGAAATT
26198602 GTATCCGTCCGGCAAAAAACCAAAATTAAGCCAAAGGAAATCCCAAGAATATAGAAAT
193 GTATCCGTCCGGCAAAAAACCAAAATTAAGCCAAAGGAAATCCCAAGAATATAGAAAT
* *
26198660 ATTCTTTGTTCATAAAAGGAATTCTATATTTCCAAAATGCAGCTTAGGT-ACAATCTCAACTCTA
1 ATTCTTTGTTCATAAAAGGAAATCTATATTCCCAAAATGCAGCTTAGGTAACAATCTCAACTCTA
* * *
26198724 GACAGCCCTATGTGAAACAAAACCTAGTTACGGTCCAACAATAGGTTGGTCTTAAACTAAGATAG
66 AACAGCCCTATGTG-AACAAAACCTAGTTACGGTCCAACAATAGGTTGGTCTTAAACTAAGACAA
* * *
26198789 AACAC-AATTTCTCAGCTAAAGATTGCCCTATGTATTTTCCGACCGTGCCATGTCCAGATATTGT
130 AACACAAATTTCTCAGCTAAAGACTGCCCTATGTATTTTCCAACCGTGCCATGTCCAGAAATTGT
26198853 ATCCGTCCGGC
195 ATCCGTCCGGC
26198864 TTGAATGGCA
Statistics
Matches: 184, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
249 65 0.35
250 26 0.14
251 50 0.27
253 43 0.23
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (250 bp):
ATTCTTTGTTCATAAAAGGAAATCTATATTCCCAAAATGCAGCTTAGGTAACAATCTCAACTCTA
AACAGCCCTATGTGAACAAAACCTAGTTACGGTCCAACAATAGGTTGGTCTTAAACTAAGACAAA
ACACAAATTTCTCAGCTAAAGACTGCCCTATGTATTTTCCAACCGTGCCATGTCCAGAAATTGTA
TCCGTCCGGCAAAAAACCAAAATTAAGCCAAAGGAAATCCCAAGAATATAGAAAT
Found at i:26199123 original size:203 final size:202
Alignment explanation
Indices: 26198678--26199167 Score: 541
Period size: 203 Copynumber: 2.4 Consensus size: 202
26198668 TTCATAAAAG
* * *
26198678 GAATTCTATATTTCCAAAATGCAGCTTAGGT---ACAATCTCAACTCTAGACA-G-CCCTATGTG
1 GAATTCTATATTCCCAAAATGCAGCTTAAGTACAACAATCTCAACTATAGA-ATGTCCC-ATGTG
* * * * *
26198738 AAACAAAACCTAGTTACGGTCCAACAATAGGTTGGTCTTAAACTAAGATAGAACACAATTTCTCA
64 -AATAAAACCTAGTTATGAT-C--C-A-A--TTGGCCTTAAACTAAGACAGAACACAATTTCTCA
* *
26198803 GCTAAAGATTGCCCTATGTATTTTCCGACCGTGCCATGTCCAGATATTGTATCCGTCCGGCTTGA
121 GCTAAAGACTGCCCTATCTATTTTCCGACCGTGCCATGTCCAGATATTGTATCCGTCCGGCTTGA
** *
26198868 ATGGCAATCTCTTCCCA
186 ACAGCAATCTCTTCCAA
* * * * *
26198885 GAATTCTATATTCCCAACATGCAGCTTAAGTACAACAATCTCAATTCTAGACTTTCCCATGTGAA
1 GAATTCTATATTCCCAAAATGCAGCTTAAGTACAACAATCTCAACTATAGAATGTCCCATGTGAA
* *
26198950 TAAAA-CTGAGTTATGATCCAATTGGCCTTAATCTAAGACAGAACACACAATTTCTTTA-CTAAA
66 TAAAACCT-AGTTATGATCCAATTGGCCTTAAACTAAGACAG-A-ACACAATTTC-TCAGCTAAA
* *
26199013 GACTGCTCTATCTATTTTCCG-CCTGTGCCATGTCCAGATATTGTAT-CGTCCGGCTTGAACAGT
127 GACTGCCCTATCTATTTTCCGACC-GTGCCATGTCCAGATATTGTATCCGTCCGGCTTGAACAGC
26199076 AATCTC-TCCAAA
191 AATCTCTTCC-AA
* * *
26199088 GAATTCTCTATTCCCAAAATGCAGCTTAGGTACAACAATCTCAACTATAGAATGTCCTATGTGAA
1 GAATTCTATATTCCCAAAATGCAGCTTAAGTACAACAATCTCAACTATAGAATGTCCCATGTGAA
26199153 TAAAACCTAGTTATG
66 TAAAACCTAGTTATG
26199168 GACCAACTGG
Statistics
Matches: 243, Mismatches: 28, Indels: 28
0.81 0.09 0.09
Matches are distributed among these distances:
202 20 0.08
203 93 0.38
204 58 0.24
205 3 0.01
206 1 0.00
207 28 0.12
208 3 0.01
209 13 0.05
210 21 0.09
211 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (202 bp):
GAATTCTATATTCCCAAAATGCAGCTTAAGTACAACAATCTCAACTATAGAATGTCCCATGTGAA
TAAAACCTAGTTATGATCCAATTGGCCTTAAACTAAGACAGAACACAATTTCTCAGCTAAAGACT
GCCCTATCTATTTTCCGACCGTGCCATGTCCAGATATTGTATCCGTCCGGCTTGAACAGCAATCT
CTTCCAA
Found at i:26204968 original size:2 final size:2
Alignment explanation
Indices: 26204955--26204996 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
26204945 AAGTACCTTG
* *
26204955 AT AT AA AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26204996 A
1 A
26204997 AAAATAAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26205879 original size:25 final size:26
Alignment explanation
Indices: 26205827--26205880 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
26205817 CAAATTTTAG
* *
26205827 AAGGACTAAAGCCTGAATTAAACCAA
1 AAGGACTAAAACCAGAATTAAACCAA
26205853 AAGGACTAAAACCAGAA-TAAACCAA
1 AAGGACTAAAACCAGAATTAAACCAA
26205878 AAG
1 AAG
26205881 TTTCAGAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.56, C:0.19, G:0.15, T:0.11
Consensus pattern (26 bp):
AAGGACTAAAACCAGAATTAAACCAA
Found at i:26215667 original size:29 final size:30
Alignment explanation
Indices: 26215602--26215668 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
26215592 AATTTTATAT
26215602 TTAAAAAAATAAAAGGACTAAATTCATAAA
1 TTAAAAAAATAAAAGGACTAAATTCATAAA
*
26215632 --AATAAAAGTATAAA-GACTAAATTCA-AAA
1 TTAA-AAAAATA-AAAGGACTAAATTCATAAA
26215660 TTAAAAAAA
1 TTAAAAAAA
26215669 AAGTAAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
28 5 0.16
29 21 0.68
30 5 0.16
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.22
Consensus pattern (30 bp):
TTAAAAAAATAAAAGGACTAAATTCATAAA
Found at i:26217676 original size:267 final size:272
Alignment explanation
Indices: 26217219--26217714 Score: 711
Period size: 267 Copynumber: 1.8 Consensus size: 272
26217209 TTTCTTTTTT
* **
26217219 AAAAAAACTCTTTAAACTCCTAAAATTTTTGGAAATTTTAGTTAGGCCCTCTGAAACTTAATCTC
1 AAAAAAACTCTTTAAACTCCTAAAATTTTTGAAAATTTTAGTTAGGCCCTCCAAAACTTAATCTC
* *
26217284 ATTATCTGCCATTGAATATATATTATTGAAGGACTTTTGATTCTTTTGAGAAAAGTTGGACACAA
66 ATGATCTGCCATTG---A-ATATTATTGAAGGACTTTCGATTCTTTTGAGAAAAGTTGGACACAA
* *
26217349 AAACCTGTTGAGTATTTACCTCTCAAAATGTCCGATATTTCTTTTCGGCAGAGATTTAATCACAA
127 AAACCTGTTGAGTATTTACCTCTCAAAATGTCCGATATTTATTTTCGACAGAGATTTAATCACAA
*** *
26217414 TGTTGGGCCTGTTG-AGAGATTCATCGACTTCAAATAAACAATGCTCTTAAAAAGTTAATTAGAC
192 TGTTAAACCTATTGAAG-GATTCATCGACTTCAAATAAACAATGCTCTTAAAAAGTTAATTAGAC
26217478 CCCCAAAATTATTTAGA
256 CCCCAAAATTATTTAGA
* * **
26217495 AAAAAAATTCTTTAAACT-CTTAAATTTTATGAAAATTTTAGTTAGGCTTTCCAAAACTTAATCT
1 AAAAAAACTCTTTAAACTCCTAAAATTTT-TGAAAATTTTAGTTAGGCCCTCCAAAACTTAATCT
*
26217559 CGTGATCTGCCATTG-A-A-TA-T-AAGGACTTTCGATTCTTTTGAGAAAAGTTGGACACGAAAA
65 CATGATCTGCCATTGAATATTATTGAAGGACTTTCGATTCTTTTGAGAAAAGTTGGACAC-AAAA
* *
26217619 GCC-GTTGAGTATTTACCTCTCAAAATGTCCGATATTTATTTTCGATAGAGATTTAATCACAATG
129 ACCTGTTGAGTATTTACCTCTCAAAATGTCCGATATTTATTTTCGACAGAGATTTAATCACAATG
26217683 TTAAACCTATTGAAGGATTCATCGACTTCAAA
194 TTAAACCTATTGAAGGATTCATCGACTTCAAA
26217715 AAAATAATAC
Statistics
Matches: 199, Mismatches: 18, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
267 117 0.59
268 9 0.05
269 2 0.01
270 1 0.01
271 1 0.01
275 9 0.05
276 60 0.30
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (272 bp):
AAAAAAACTCTTTAAACTCCTAAAATTTTTGAAAATTTTAGTTAGGCCCTCCAAAACTTAATCTC
ATGATCTGCCATTGAATATTATTGAAGGACTTTCGATTCTTTTGAGAAAAGTTGGACACAAAAAC
CTGTTGAGTATTTACCTCTCAAAATGTCCGATATTTATTTTCGACAGAGATTTAATCACAATGTT
AAACCTATTGAAGGATTCATCGACTTCAAATAAACAATGCTCTTAAAAAGTTAATTAGACCCCCA
AAATTATTTAGA
Found at i:26221381 original size:16 final size:17
Alignment explanation
Indices: 26221348--26221385 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26221338 GAAACATTTA
*
26221348 TTTTAATGTTTTAGTAT
1 TTTTAATGTATTAGTAT
*
26221365 TTTTTATGTATTA-TAT
1 TTTTAATGTATTAGTAT
26221381 TTTTA
1 TTTTA
26221386 TAAAAATTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (17 bp):
TTTTAATGTATTAGTAT
Found at i:26225170 original size:13 final size:13
Alignment explanation
Indices: 26225152--26225193 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
26225142 TATATTTTAT
26225152 GTTTAAATATTTC
1 GTTTAAATATTTC
26225165 GTTTAAGA-ATTAT-
1 GTTTAA-ATATT-TC
26225178 GTTTAAATATTTC
1 GTTTAAATATTTC
26225191 GTT
1 GTT
26225194 GATTTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 2 0.08
13 21 0.84
14 2 0.08
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.52
Consensus pattern (13 bp):
GTTTAAATATTTC
Found at i:26232396 original size:27 final size:27
Alignment explanation
Indices: 26232366--26232417 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
26232356 GGCCAATCAC
26232366 ATTGGCGGCACCAAAGGAGCCAAAGAG
1 ATTGGCGGCACCAAAGGAGCCAAAGAG
* *
26232393 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAAAGGAGCCAAAG
26232418 GACTAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.23, G:0.33, T:0.12
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGAGCCAAAGAG
Found at i:26233350 original size:27 final size:27
Alignment explanation
Indices: 26233309--26233360 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
26233299 CATTTTAGTC
26233309 CTTTGGCACCATTGGTGCCGCCAATCT
1 CTTTGGCACCATTGGTGCCGCCAATCT
*
26233336 CTTTGGCACCTTTGGTGCCGCCAAT
1 CTTTGGCACCATTGGTGCCGCCAAT
26233361 GTGATTGGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.33, G:0.23, T:0.31
Consensus pattern (27 bp):
CTTTGGCACCATTGGTGCCGCCAATCT
Found at i:26233368 original size:27 final size:27
Alignment explanation
Indices: 26233311--26233369 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
26233301 TTTTAGTCCT
*
26233311 TTGGCACCATTGGTGCCGCCAATCTCT
1 TTGGCACCATTGGTGCCGCCAATCTCA
* * *
26233338 TTGGCACCTTTGGTGCCGCCAATGTGA
1 TTGGCACCATTGGTGCCGCCAATCTCA
26233365 TTGGC
1 TTGGC
26233370 CTGATCAGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.14, C:0.29, G:0.27, T:0.31
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCTCA
Found at i:26233449 original size:26 final size:27
Alignment explanation
Indices: 26233420--26233482 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
26233410 TTTTTTTGGT
*
26233420 ATATTTTGGTAAAT-AAAAAATTTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
**
26233446 ATATTTTGACAAATAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
26233473 ATATTTTGGT
1 ATATTTTGGT
26233483 TATTTTTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
26 12 0.39
27 19 0.61
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.41
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTATA
Found at i:26247552 original size:6 final size:6
Alignment explanation
Indices: 26247543--26247577 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
26247533 ATGTATATGT
*
26247543 ATATAG ATATAG AAATAG ATATAG ATATAG ATATA
1 ATATAG ATATAG ATATAG ATATAG ATATAG ATATA
26247578 TACCTTTGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.54, C:0.00, G:0.14, T:0.31
Consensus pattern (6 bp):
ATATAG
Found at i:26250311 original size:20 final size:20
Alignment explanation
Indices: 26250281--26250318 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26250271 TATTTCGATT
26250281 ATTTATTTATTTTAGTTTTTC
1 ATTTATTTATTTTA-TTTTTC
26250302 ATTT-TTTATTTTATTTT
1 ATTTATTTATTTTATTTT
26250319 ATAATTACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (20 bp):
ATTTATTTATTTTATTTTTC
Found at i:26266484 original size:41 final size:41
Alignment explanation
Indices: 26266427--26266510 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
26266417 AAACCTTGTA
26266427 CACGAACTTAAAATATCTCGAAATTTAAAATGACATAAACC
1 CACGAACTTAAAATATCTCGAAATTTAAAATGACATAAACC
26266468 CACGAACTTAAAATATCTCGAAATTTAAAATGACATAAACC
1 CACGAACTTAAAATATCTCGAAATTTAAAATGACATAAACC
26266509 CA
1 CA
26266511 TAATGATCCG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (41 bp):
CACGAACTTAAAATATCTCGAAATTTAAAATGACATAAACC
Found at i:26269951 original size:2 final size:2
Alignment explanation
Indices: 26269944--26269978 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
26269934 GCTTTCACCG
*
26269944 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26269979 AAGGTGTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26271352 original size:18 final size:17
Alignment explanation
Indices: 26271320--26271353 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26271310 TAAATTTAAT
26271320 TAAAAAAATTATATAAA
1 TAAAAAAATTATATAAA
*
26271337 TAAAGAAATATATATAA
1 TAAAAAAAT-TATATAA
26271354 TTATTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (17 bp):
TAAAAAAATTATATAAA
Found at i:26274535 original size:124 final size:124
Alignment explanation
Indices: 26274392--26274652 Score: 330
Period size: 124 Copynumber: 2.1 Consensus size: 124
26274382 AACACTTTGT
* * * * *
26274392 TAATGAATTAATTTGATAATGGAT-AAAAGTTAAAGTTTTATGAAATTTTTTATCCTAAAGTTTT
1 TAATTAATTAATTTGATAATAGATGAAAA-TCAAAATTTTATGAAATTTTGTATCCTAAAGTTTT
* * * * **
26274456 TAATTTTTCATTAATCTT-AACAATTTAATAAGTAAGAAA-TTCAAATTTATAAAAAAAACC
65 AAAATTTTCATTAATCTTAAAAAAATTAATAAACAAGAAACTT-AAATTTAT-AAAAAAACC
* *
26274516 TAATTAATTAATTTGATAATAGATGACAATCAAAATTTTATGAAATTTTGTATCTTAAAGTTTTA
1 TAATTAATTAATTTGATAATAGATGAAAATCAAAATTTTATGAAATTTTGTATCCTAAAGTTTTA
* * *
26274581 AAATTTTCATTAATCTTAAAAAAATTAATAAACAAGAAACTTAAATTTATCAAAACACT
66 AAATTTTCATTAATCTTAAAAAAATTAATAAACAAGAAACTTAAATTTATAAAAAAACC
26274640 TAATTAATTAATT
1 TAATTAATTAATT
26274653 AATTAATTTG
Statistics
Matches: 118, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
124 88 0.75
125 28 0.24
126 2 0.02
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.41
Consensus pattern (124 bp):
TAATTAATTAATTTGATAATAGATGAAAATCAAAATTTTATGAAATTTTGTATCCTAAAGTTTTA
AAATTTTCATTAATCTTAAAAAAATTAATAAACAAGAAACTTAAATTTATAAAAAAACC
Found at i:26275408 original size:26 final size:26
Alignment explanation
Indices: 26275379--26275429 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26275369 AAAATTAACA
26275379 TTTA-TATATGATTTTATTCATTATTT
1 TTTATTATATGA-TTTATTCATTATTT
*
26275405 TTTATTCTATGATTTATTCATTATT
1 TTTATTATATGATTTATTCATTATT
26275430 GGGAATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.65
Consensus pattern (26 bp):
TTTATTATATGATTTATTCATTATTT
Found at i:26276512 original size:140 final size:141
Alignment explanation
Indices: 26276359--26276650 Score: 568
Period size: 140 Copynumber: 2.1 Consensus size: 141
26276349 TTGGTGAGAG
26276359 AGAAAAAAAAGCGAGCGATAGTGAACCCAAAGAAAAACATATGTAACTTTAGAAACTAATAAATA
1 AGAAAAAAAAGCGAGCGATAGTGAACCCAAAGAAAAACATATGTAACTTTAGAAACTAATAAATA
26276424 TTAAAATTTAATAAATTAAATTAAAATTTTTATTCAATGAAATAAAAACTTGAAAAATAAGAATA
66 TTAAAATTTAATAAATTAAATTAAAATTTTTATTCAATGAAATAAAAACTTGAAAAATAAGAATA
26276489 CAT-TATCATA
131 CATATATCATA
26276499 AGAAAAAAAAGCGAGCGATAGTGAACCCAAAGAAAAACATATGTAACTTTAGAAACTAATAAATA
1 AGAAAAAAAAGCGAGCGATAGTGAACCCAAAGAAAAACATATGTAACTTTAGAAACTAATAAATA
26276564 TTAAAATTTAATAAATTAAATTAAAATTTTTATTCAATGAAATAAAAACTTGAAAAATAAGAATA
66 TTAAAATTTAATAAATTAAATTAAAATTTTTATTCAATGAAATAAAAACTTGAAAAATAAGAATA
26276629 CATATATCATA
131 CATATATCATA
*
26276640 AGATAAAAAAG
1 AGAAAAAAAAG
26276651 GTAAATTTTA
Statistics
Matches: 150, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
140 133 0.89
141 17 0.11
ACGTcount: A:0.56, C:0.08, G:0.10, T:0.26
Consensus pattern (141 bp):
AGAAAAAAAAGCGAGCGATAGTGAACCCAAAGAAAAACATATGTAACTTTAGAAACTAATAAATA
TTAAAATTTAATAAATTAAATTAAAATTTTTATTCAATGAAATAAAAACTTGAAAAATAAGAATA
CATATATCATA
Found at i:26282503 original size:34 final size:34
Alignment explanation
Indices: 26282448--26282513 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
26282438 CAAACACCAG
*
26282448 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTAC-GAAAAGT
*
26282483 AAAACATTTTCCCG-AAATCATTTTACGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACGAAAA
26282514 ATATTTTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.41
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.32
Consensus pattern (34 bp):
AAAACATTTTCCAGTAAATCATTTTACGAAAAGT
Found at i:26289909 original size:8 final size:7
Alignment explanation
Indices: 26289885--26289915 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
26289875 TTGACATAGA
26289885 TTTTCCT
1 TTTTCCT
26289892 TTTTCCT
1 TTTTCCT
26289899 TTTTCCT
1 TTTTCCT
*
26289906 TTTTTCT
1 TTTTCCT
26289913 TTT
1 TTT
26289916 AAATAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTCCT
Found at i:26289934 original size:2 final size:2
Alignment explanation
Indices: 26289922--26289982 Score: 81
Period size: 2 Copynumber: 31.5 Consensus size: 2
26289912 TTTTAAATAA
* * *
26289922 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AC GT GT AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26289962 AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A
26289983 AAAATATACA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
1 2 0.04
2 51 0.96
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:26306439 original size:18 final size:18
Alignment explanation
Indices: 26306416--26306451 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26306406 GTCGTGTTCG
*
26306416 TTAATAATTTAATTAATT
1 TTAATAATTTAATCAATT
*
26306434 TTAATATTTTAATCAATT
1 TTAATAATTTAATCAATT
26306452 ACATAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAATAATTTAATCAATT
Found at i:26312131 original size:26 final size:27
Alignment explanation
Indices: 26312088--26312195 Score: 87
Period size: 26 Copynumber: 3.9 Consensus size: 27
26312078 CTTCCATGTT
**
26312088 TAATTTGGTACCCAAG-TTTTCCTTTC
1 TAATTTGGTACCTGAGTTTTTCCTTTC
* *
26312114 TAATTTGGTACTTGAGTTTGACTTCAATGTTC
1 TAATTTGGTACCTGAGTTT---TTC-CT-TTC
**
26312146 -AATTTGGTACCTGAGTTTTTTTTTTC
1 TAATTTGGTACCTGAGTTTTTCCTTTC
*
26312172 TAATTTGGTACTTGAG-TTTTCCTT
1 TAATTTGGTACCTGAGTTTTTCCTT
26312196 CCATGTTCAA
Statistics
Matches: 65, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
26 22 0.34
27 17 0.26
28 2 0.03
30 3 0.05
31 18 0.28
32 3 0.05
ACGTcount: A:0.19, C:0.15, G:0.16, T:0.51
Consensus pattern (27 bp):
TAATTTGGTACCTGAGTTTTTCCTTTC
Found at i:26312150 original size:57 final size:54
Alignment explanation
Indices: 26312074--26312259 Score: 205
Period size: 58 Copynumber: 3.4 Consensus size: 54
26312064 TTTGGTGAAT
* *
26312074 TTTACTTCCATGTTTAATTTGGTACCCAAGTTTTCCTTTCTAATTTGGTACTTGAG
1 TTTACTTCAATGTTCAATTTGGTACCCAAGTTTT--TTTCTAATTTGGTACTTGAG
**
26312130 TTTGACTTCAATGTTCAATTTGGTACCTGAGTTTTTTTTTTCTAATTTGGTACTTGAG
1 TTT-ACTTCAATGTTCAATTTGGTACCCAAG---TTTTTTTCTAATTTGGTACTTGAG
* * ** *
26312188 TTTTCCTTCCATGTTCAATTTGGTACCCAAGTTTTTTTCCCATTTGGTACATGAG
1 -TTTACTTCAATGTTCAATTTGGTACCCAAGTTTTTTTCTAATTTGGTACTTGAG
*
26312243 --TACTTTAATGTTCAATT
1 TTTACTTCAATGTTCAATT
26312260 CGTTACTTTA
Statistics
Matches: 111, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
52 14 0.13
55 21 0.19
56 3 0.03
57 23 0.21
58 43 0.39
59 3 0.03
60 4 0.04
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (54 bp):
TTTACTTCAATGTTCAATTTGGTACCCAAGTTTTTTTCTAATTTGGTACTTGAG
Found at i:26312187 original size:27 final size:28
Alignment explanation
Indices: 26312110--26312191 Score: 87
Period size: 27 Copynumber: 2.9 Consensus size: 28
26312100 CAAGTTTTCC
26312110 TTTCTAATTTGGTACTTGAGTTTGACTTCAAT
1 TTTCTAATTTGGTACTTGAGTTT---TT-AAT
* * *
26312142 GTTC-AATTTGGTACCTGAGTTTTT-TT
1 TTTCTAATTTGGTACTTGAGTTTTTAAT
26312168 TTTCTAATTTGGTACTTGAGTTTT
1 TTTCTAATTTGGTACTTGAGTTTT
26312192 CCTTCCATGT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
26 4 0.09
27 18 0.41
28 2 0.05
31 17 0.39
32 3 0.07
ACGTcount: A:0.18, C:0.11, G:0.17, T:0.54
Consensus pattern (28 bp):
TTTCTAATTTGGTACTTGAGTTTTTAAT
Found at i:26312202 original size:58 final size:58
Alignment explanation
Indices: 26312073--26312225 Score: 227
Period size: 58 Copynumber: 2.7 Consensus size: 58
26312063 ATTTGGTGAA
* **
26312073 TTTTACTTCCATGTTTAATTTGGTACCCAAG-TTTTCCTTTCTAATTTGGTACTTGAG
1 TTTTACTTCCATGTTCAATTTGGTACCCAAGTTTTTTTTTTCTAATTTGGTACTTGAG
* * **
26312130 TTTGACTTCAATGTTCAATTTGGTACCTGAGTTTTTTTTTTCTAATTTGGTACTTGAG
1 TTTTACTTCCATGTTCAATTTGGTACCCAAGTTTTTTTTTTCTAATTTGGTACTTGAG
*
26312188 TTTTCCTTCCATGTTCAATTTGGTACCCAAGTTTTTTT
1 TTTTACTTCCATGTTCAATTTGGTACCCAAGTTTTTTT
26312226 CCCATTTGGT
Statistics
Matches: 83, Mismatches: 12, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
57 26 0.31
58 57 0.69
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.51
Consensus pattern (58 bp):
TTTTACTTCCATGTTCAATTTGGTACCCAAGTTTTTTTTTTCTAATTTGGTACTTGAG
Found at i:26312222 original size:31 final size:30
Alignment explanation
Indices: 26312073--26312214 Score: 104
Period size: 31 Copynumber: 4.9 Consensus size: 30
26312063 ATTTGGTGAA
* **
26312073 TTTTACTTCCATGTTTAATTTGGTACCCAAG
1 TTTTACTT-CATGTTCAATTTGGTACCTGAG
*
26312104 TTTT-C--C-T-TTCTAATTTGGTACTTGAG
1 TTTTACTTCATGTTC-AATTTGGTACCTGAG
*
26312130 TTTGACTTCAATGTTCAATTTGGTACCTGAG
1 TTTTACTTC-ATGTTCAATTTGGTACCTGAG
* *
26312161 TTTT--TT--TTTTCTAATTTGGTACTTGAG
1 TTTTACTTCATGTTC-AATTTGGTACCTGAG
*
26312188 TTTTCCTTCCATGTTCAATTTGGTACC
1 TTTTACTT-CATGTTCAATTTGGTACC
26312215 CAAGTTTTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 26
0.70 0.09 0.21
Matches are distributed among these distances:
25 2 0.02
26 20 0.23
27 20 0.23
29 5 0.06
30 1 0.01
31 32 0.37
32 7 0.08
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (30 bp):
TTTTACTTCATGTTCAATTTGGTACCTGAG
Found at i:26312389 original size:24 final size:24
Alignment explanation
Indices: 26312362--26312416 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
26312352 CAAAGTAAAC
**
26312362 ATTGAAACCAAACTCAAATACCAA
1 ATTGAAAAAAAACTCAAATACCAA
*
26312386 ATTGGAAAAAAAACTCAAGTACCAA
1 ATT-GAAAAAAAACTCAAATACCAA
26312411 ATTGAA
1 ATTGAA
26312417 TATTAAAGTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.55, C:0.18, G:0.09, T:0.18
Consensus pattern (24 bp):
ATTGAAAAAAAACTCAAATACCAA
Found at i:26326226 original size:31 final size:31
Alignment explanation
Indices: 26326191--26326250 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
26326181 AACAACTCAA
26326191 TGACTTAAATAAAAACTTTCAAATAGTTCAG
1 TGACTTAAATAAAAACTTTCAAATAGTTCAG
* * **
26326222 TGACTTAAATGAAAGCTTTTGAATAGTTC
1 TGACTTAAATAAAAACTTTCAAATAGTTC
26326251 GAAGAACATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTCAAATAGTTCAG
Found at i:26330666 original size:37 final size:36
Alignment explanation
Indices: 26330613--26330699 Score: 124
Period size: 37 Copynumber: 2.4 Consensus size: 36
26330603 NNNNNNNNNN
26330613 ACAAAGTGATAAGTGGCTACACTTATCTT-ATCAAGAA
1 ACAAAGTGATAAGTGGCTACACTTAT-TTAATC-AGAA
* *
26330650 ACAAAGTGATAGGTGGCTACACTTATTTAATCAGAG
1 ACAAAGTGATAAGTGGCTACACTTATTTAATCAGAA
26330686 AC-AAGTGATAAGTG
1 ACAAAGTGATAAGTG
26330700 ATCATACGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
35 11 0.24
36 7 0.15
37 28 0.61
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (36 bp):
ACAAAGTGATAAGTGGCTACACTTATTTAATCAGAA
Found at i:26335462 original size:15 final size:16
Alignment explanation
Indices: 26335432--26335465 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
26335422 AATATGTAAT
26335432 TTTATCATTTTAATAA
1 TTTATCATTTTAATAA
*
26335448 TTTAT-ATTTTTATAA
1 TTTATCATTTTAATAA
26335463 TTT
1 TTT
26335466 TTATAGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATCATTTTAATAA
Found at i:26336329 original size:29 final size:29
Alignment explanation
Indices: 26336274--26336334 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
26336264 TTTGATTACT
* * * *
26336274 CAATTATGAAAATTTATAGAATAATCATC
1 CAATTATGAAAAGTTACAAAATAATCACC
*
26336303 CAATTATGAAAAGTTACAAAATGATCACC
1 CAATTATGAAAAGTTACAAAATAATCACC
26336332 CAA
1 CAA
26336335 CTATTCAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.49, C:0.15, G:0.08, T:0.28
Consensus pattern (29 bp):
CAATTATGAAAAGTTACAAAATAATCACC
Found at i:26337232 original size:12 final size:13
Alignment explanation
Indices: 26337215--26337247 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
26337205 GCTTGTATTA
*
26337215 ATTTTTTATGT-T
1 ATTTTTTATATAT
26337227 ATTTTTTATATAT
1 ATTTTTTATATAT
26337240 ATTTTTTA
1 ATTTTTTA
26337248 AAAATATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (13 bp):
ATTTTTTATATAT
Found at i:26341656 original size:15 final size:15
Alignment explanation
Indices: 26341636--26341680 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
26341626 AAACCAAGAA
*
26341636 GCTGTTGTTGCTGCT
1 GCTGTTGTTGTTGCT
26341651 GCTGTTGTTGTTGCT
1 GCTGTTGTTGTTGCT
*
26341666 GCTGCTGTTGTTGCT
1 GCTGTTGTTGTTGCT
26341681 CTTGTTCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.00, C:0.18, G:0.33, T:0.49
Consensus pattern (15 bp):
GCTGTTGTTGTTGCT
Found at i:26341661 original size:18 final size:18
Alignment explanation
Indices: 26341638--26341678 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
26341628 ACCAAGAAGC
26341638 TGTTGTTGCTGCTGCTGT
1 TGTTGTTGCTGCTGCTGT
26341656 TGTTGTTGCTGCTGCTGT
1 TGTTGTTGCTGCTGCTGT
26341674 TGTTG
1 TGTTG
26341679 CTCTTGTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.00, C:0.15, G:0.34, T:0.51
Consensus pattern (18 bp):
TGTTGTTGCTGCTGCTGT
Found at i:26345455 original size:21 final size:22
Alignment explanation
Indices: 26345415--26345455 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
26345405 CGACGTGGTA
* *
26345415 TATTTAACTATATTAGATAAAT
1 TATTTAACTATATAAAATAAAT
26345437 TATTTAA-TATATAAAATAA
1 TATTTAACTATATAAAATAA
26345456 GAAAGTACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
TATTTAACTATATAAAATAAAT
Found at i:26360899 original size:31 final size:31
Alignment explanation
Indices: 26360864--26360922 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
26360854 TACAGAATGG
* *
26360864 TTATTGAATTATTTAATAGTTTTTATTTAAT
1 TTATTAAATTATTTAATAATTTTTATTTAAT
26360895 TTATTAAATTATTTAATAATTTTTATTT
1 TTATTAAATTATTTAATAATTTTTATTT
26360923 GACTAAATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (31 bp):
TTATTAAATTATTTAATAATTTTTATTTAAT
Found at i:26361967 original size:7 final size:7
Alignment explanation
Indices: 26361955--26361988 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
26361945 ATTAATATTT
26361955 TTTATAA
1 TTTATAA
26361962 TTTATAA
1 TTTATAA
26361969 TTTATAA
1 TTTATAA
*
26361976 TTTTATAT
1 -TTTATAA
26361984 TTTAT
1 TTTAT
26361989 GAAAATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (7 bp):
TTTATAA
Found at i:26361974 original size:14 final size:15
Alignment explanation
Indices: 26361955--26361988 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26361945 ATTAATATTT
26361955 TTTATAA-TTTATAA
1 TTTATAATTTTATAA
*
26361969 TTTATAATTTTATAT
1 TTTATAATTTTATAA
26361984 TTTAT
1 TTTAT
26361989 GAAAATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTATAATTTTATAA
Found at i:26362211 original size:260 final size:261
Alignment explanation
Indices: 26361750--26362271 Score: 1037
Period size: 260 Copynumber: 2.0 Consensus size: 261
26361740 AACATTTGAA
26361750 TTTTAAATTAATTAAAGTAAATTTAATTAAAAAAATTAATTAAAGGAGATTGTAAATAATTTTGA
1 TTTTAAATTAATTAAAGTAAATTTAATTAAAAAAATTAATTAAAGGAGATTGTAAATAATTTTGA
26361815 GTTTGTTTTTTATTTAGATTACTTTGAGTAAAAATATAAGAGAACCTATATCTCTCTTTTCTTAC
66 GTTTGTTTTTTATTTAGATTACTTTGAGTAAAAATATAAGAGAACCTATATCTCTCTTTTCTTAC
26361880 ATGATGAACATGACTCAAAAATTTTGTTAGATTTTTGAGTTAAAAACTTTTGATTATTTTATGGG
131 ATGATGAACATGACTCAAAAATTTTGTTAGATTTTTGAGTTAAAAACTTTTGATTATTTTATGGG
26361945 ATTAATATTTTTTATAATTTATAATTTATAATTTTATATTTTATGAAAATTTTAT-TATTTATTT
196 ATTAATATTTTTTATAATTTATAATTTATAATTTTATATTTTATGAAAATTTTATATATTTATTT
26362009 C
261 C
26362010 TTTTAAATTAATTAAAGTAAATTTAATTAAAAAAATTAATTAAAGGAGATTGTAAATAATTTTGA
1 TTTTAAATTAATTAAAGTAAATTTAATTAAAAAAATTAATTAAAGGAGATTGTAAATAATTTTGA
26362075 GTTTGTTTTTTATTTAGATTACTTTGAGTAAAAATATAAGAGAACCTATATCTCTCTTTTCTTAC
66 GTTTGTTTTTTATTTAGATTACTTTGAGTAAAAATATAAGAGAACCTATATCTCTCTTTTCTTAC
26362140 ATGATGAACATGACTCAAAAATTTTGTTAGATTTTTGAGTTAAAAACTTTTGATTATTTTATGGG
131 ATGATGAACATGACTCAAAAATTTTGTTAGATTTTTGAGTTAAAAACTTTTGATTATTTTATGGG
26362205 ATTAATATTTTTTATAATTTATAATTTATAATTTTATATTTTATGAAAATTTTATATATTTATTT
196 ATTAATATTTTTTATAATTTATAATTTATAATTTTATATTTTATGAAAATTTTATATATTTATTT
26362270 C
261 C
26362271 T
1 T
26362272 ATTTTTATAA
Statistics
Matches: 261, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
260 250 0.96
261 11 0.04
ACGTcount: A:0.37, C:0.05, G:0.10, T:0.48
Consensus pattern (261 bp):
TTTTAAATTAATTAAAGTAAATTTAATTAAAAAAATTAATTAAAGGAGATTGTAAATAATTTTGA
GTTTGTTTTTTATTTAGATTACTTTGAGTAAAAATATAAGAGAACCTATATCTCTCTTTTCTTAC
ATGATGAACATGACTCAAAAATTTTGTTAGATTTTTGAGTTAAAAACTTTTGATTATTTTATGGG
ATTAATATTTTTTATAATTTATAATTTATAATTTTATATTTTATGAAAATTTTATATATTTATTT
C
Found at i:26362227 original size:7 final size:7
Alignment explanation
Indices: 26362215--26362248 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
26362205 ATTAATATTT
26362215 TTTATAA
1 TTTATAA
26362222 TTTATAA
1 TTTATAA
26362229 TTTATAA
1 TTTATAA
*
26362236 TTTTATAT
1 -TTTATAA
26362244 TTTAT
1 TTTAT
26362249 GAAAATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (7 bp):
TTTATAA
Found at i:26362234 original size:14 final size:15
Alignment explanation
Indices: 26362215--26362267 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
26362205 ATTAATATTT
26362215 TTTATAA-TTTATAA
1 TTTATAATTTTATAA
*
26362229 TTTATAATTTTATAT
1 TTTATAATTTTATAA
26362244 TTTATGAAAATTTTATATA
1 TTTAT---AATTTTATA-A
26362263 TTTAT
1 TTTAT
26362268 TTCTATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 7 0.22
15 11 0.34
18 9 0.28
19 5 0.16
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (15 bp):
TTTATAATTTTATAA
Found at i:26363745 original size:5 final size:5
Alignment explanation
Indices: 26363735--26363761 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26363725 GGGATATTTA
26363735 AAAAG AAAAG AAAAG AAAAG AAAAG AA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AA
26363762 TCTGTGTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:26365730 original size:29 final size:29
Alignment explanation
Indices: 26365680--26365742 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
26365670 TAACTTAGAT
*
26365680 ATTTATAATTTTAAAGGATTAAATTAAAA
1 ATTTATAATTTTAAAGGATTAAAGTAAAA
* ** * *
26365709 ATTTATCATTTTAGGGGGTTAAAGTACAA
1 ATTTATAATTTTAAAGGATTAAAGTAAAA
26365738 ATTTA
1 ATTTA
26365743 ACCATTTACT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.43, C:0.03, G:0.13, T:0.41
Consensus pattern (29 bp):
ATTTATAATTTTAAAGGATTAAAGTAAAA
Found at i:26367776 original size:24 final size:23
Alignment explanation
Indices: 26367748--26367793 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
26367738 ATCCAATCCA
26367748 TTTTCAAGTTTATAATATATTATT
1 TTTTCAAGTTTAT-ATATATTATT
***
26367772 TTTTCTTTTTTATATATATTAT
1 TTTTCAAGTTTATATATATTAT
26367794 GTAATTTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (23 bp):
TTTTCAAGTTTATATATATTATT
Found at i:26371058 original size:13 final size:13
Alignment explanation
Indices: 26371042--26371066 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26371032 ATGTCACACC
26371042 AAAAATTTTAACT
1 AAAAATTTTAACT
26371055 AAAAATTTTAAC
1 AAAAATTTTAAC
26371067 GGGATTAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAAATTTTAACT
Found at i:26372535 original size:21 final size:21
Alignment explanation
Indices: 26372509--26372573 Score: 94
Period size: 24 Copynumber: 3.0 Consensus size: 21
26372499 TTGTTGCTTC
26372509 ACCACTATAAATTGGTCCTGA
1 ACCACTATAAATTGGTCCTGA
*
26372530 ACCACTATAAAATTGTCTTCCTGA
1 ACCACTAT-AAATTG--GTCCTGA
26372554 ACCACTATAAATTGGTCCTG
1 ACCACTATAAATTGGTCCTG
26372574 GTGGCATTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
21 13 0.33
22 6 0.15
23 6 0.15
24 14 0.36
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (21 bp):
ACCACTATAAATTGGTCCTGA
Found at i:26372632 original size:45 final size:45
Alignment explanation
Indices: 26372572--26372657 Score: 163
Period size: 45 Copynumber: 1.9 Consensus size: 45
26372562 AAATTGGTCC
26372572 TGGTGGCATTGGGGATGATGAACTCCATCCATTGCCACCACTTGG
1 TGGTGGCATTGGGGATGATGAACTCCATCCATTGCCACCACTTGG
*
26372617 TGGTGGCATTGGGGATGATGAACTCCATCCATTGCCGCCAC
1 TGGTGGCATTGGGGATGATGAACTCCATCCATTGCCACCAC
26372658 CATAGCCATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.26
Consensus pattern (45 bp):
TGGTGGCATTGGGGATGATGAACTCCATCCATTGCCACCACTTGG
Found at i:26373237 original size:31 final size:31
Alignment explanation
Indices: 26373167--26373237 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
26373157 TTTAACAAGC
* *
26373167 AACATTGAGGGCTAGATTGACATAATATGTA
1 AACATTGAGAGCTAGATTAACATAATATGTA
*
26373198 ATCATTGAGAGCTAGATTAACATAATATGTA
1 AACATTGAGAGCTAGATTAACATAATATGTA
*
26373229 AACTTTGAG
1 AACATTGAG
26373238 GACTAAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (31 bp):
AACATTGAGAGCTAGATTAACATAATATGTA
Found at i:26375460 original size:16 final size:16
Alignment explanation
Indices: 26375439--26375478 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
26375429 CGTTTGGTTC
*
26375439 GCTGTAATTGAATAGA
1 GCTGTAATGGAATAGA
26375455 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
26375471 ACTGTAAT
1 GCTGTAAT
26375479 AGTAATTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:26375511 original size:45 final size:44
Alignment explanation
Indices: 26375460--26375552 Score: 152
Period size: 44 Copynumber: 2.1 Consensus size: 44
26375450 ATAGAGCTGT
26375460 AATGGAATAGAACTGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-ATTC-ATGTGTTTGGTTGAATGG
*
26375505 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATGG
26375549 AATG
1 AATG
26375553 ATGTTGTAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.50
45 22 0.48
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATGG
Found at i:26377833 original size:27 final size:26
Alignment explanation
Indices: 26377775--26377833 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
26377765 GACAAAAAAA
26377775 ACAAAACTATTTAAAAAAATAAACTG
1 ACAAAACTATTTAAAAAAATAAACTG
* * **
26377801 AAAAAACTGTTTAAAAAAAATAATTTG
1 ACAAAACTATTT-AAAAAAATAAACTG
26377828 ACAAAA
1 ACAAAA
26377834 AAAGTGATGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 10 0.37
27 17 0.63
ACGTcount: A:0.63, C:0.08, G:0.05, T:0.24
Consensus pattern (26 bp):
ACAAAACTATTTAAAAAAATAAACTG
Found at i:26377906 original size:27 final size:26
Alignment explanation
Indices: 26377876--26377943 Score: 91
Period size: 27 Copynumber: 2.6 Consensus size: 26
26377866 TGCCTGGGGA
26377876 AGAGGCGGCACCGGTCACGCCTTCCCC
1 AGAGGCGGCACCGGTCACGCCTT-CCC
* **
26377903 AGAGGCGGCATCGGTCATTCCTTCCC
1 AGAGGCGGCACCGGTCACGCCTTCCC
*
26377929 AAAGGCGGCACCGGT
1 AGAGGCGGCACCGGT
26377944 TGCTGCTGCA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 16 0.44
27 20 0.56
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.15
Consensus pattern (26 bp):
AGAGGCGGCACCGGTCACGCCTTCCC
Found at i:26378069 original size:19 final size:19
Alignment explanation
Indices: 26378038--26378075 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
26378028 TAGCTAGTCG
26378038 AAAGAGAGAAAGAAGAAGA
1 AAAGAGAGAAAGAAGAAGA
26378057 AAAGA-AGAGAAGAAGAAGA
1 AAAGAGAGA-AAGAAGAAGA
26378076 GGGAGGGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (19 bp):
AAAGAGAGAAAGAAGAAGA
Found at i:26385816 original size:27 final size:27
Alignment explanation
Indices: 26385745--26385820 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
26385735 GGAGTGGGTG
* * * *
26385745 CCGCCTATGGGGATGGCATCACCGATG
1 CCGCCTATGGGGAAGGCGTGACCGATA
*
26385772 CCGCCTATGGGGAAGGCGTGACCGGTA
1 CCGCCTATGGGGAAGGCGTGACCGATA
*
26385799 CCGCCTATGGGAAAGGCGTGAC
1 CCGCCTATGGGGAAGGCGTGAC
26385821 TAGTGCCGCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.20, C:0.28, G:0.37, T:0.16
Consensus pattern (27 bp):
CCGCCTATGGGGAAGGCGTGACCGATA
Found at i:26385829 original size:27 final size:27
Alignment explanation
Indices: 26385742--26385831 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
26385732 GGGGGAGTGG
* * * *
26385742 GTGCCGCCTATGGGGATGGCATCACC-
1 GTGCCGCCTATGGGAAAGGCGTGACCA
* *
26385768 GATGCCGCCTATGGGGAAGGCGTGACCG
1 G-TGCCGCCTATGGGAAAGGCGTGACCA
* *
26385796 GTACCGCCTATGGGAAAGGCGTGACTA
1 GTGCCGCCTATGGGAAAGGCGTGACCA
26385823 GTGCCGCCT
1 GTGCCGCCT
26385832 CTTCCATAGG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.02
27 52 0.96
28 1 0.02
ACGTcount: A:0.18, C:0.28, G:0.37, T:0.18
Consensus pattern (27 bp):
GTGCCGCCTATGGGAAAGGCGTGACCA
Found at i:26391205 original size:12 final size:12
Alignment explanation
Indices: 26391188--26391237 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
26391178 TACCTCTTCT
26391188 TCCTCATCATCC
1 TCCTCATCATCC
*
26391200 TCCTCATCATCA
1 TCCTCATCATCC
* *
26391212 TCTTCGTCATCC
1 TCCTCATCATCC
* *
26391224 TCATCCTCATCC
1 TCCTCATCATCC
26391236 TC
1 TC
26391238 TACCCCATCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.16, C:0.46, G:0.02, T:0.36
Consensus pattern (12 bp):
TCCTCATCATCC
Found at i:26391211 original size:15 final size:15
Alignment explanation
Indices: 26391191--26391231 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
26391181 CTCTTCTTCC
26391191 TCATCATCCTCCTCA
1 TCATCATCCTCCTCA
* *
26391206 TCATCATCTTCGTCA
1 TCATCATCCTCCTCA
*
26391221 TCCTCATCCTC
1 TCATCATCCTC
26391232 ATCCTCTACC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.17, C:0.44, G:0.02, T:0.37
Consensus pattern (15 bp):
TCATCATCCTCCTCA
Found at i:26391603 original size:15 final size:15
Alignment explanation
Indices: 26391583--26391619 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
26391573 CTGGATCATA
26391583 TTCATCATCATCCTC
1 TTCATCATCATCCTC
* *
26391598 TTCATCTTCCTCCTC
1 TTCATCATCATCCTC
26391613 TTCATCA
1 TTCATCA
26391620 GACTCCGGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.16, C:0.41, G:0.00, T:0.43
Consensus pattern (15 bp):
TTCATCATCATCCTC
Found at i:26393015 original size:26 final size:27
Alignment explanation
Indices: 26392963--26393025 Score: 110
Period size: 26 Copynumber: 2.4 Consensus size: 27
26392953 TAAAAAAATA
26392963 ACCAAAATATTATAATTTTTTTTATTT
1 ACCAAAATATTATAATTTTTTTTATTT
*
26392990 ATCAAAATATTATAA-TTTTTTTATTT
1 ACCAAAATATTATAATTTTTTTTATTT
26393016 ACCAAAATAT
1 ACCAAAATAT
26393026 ACCAAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 20 0.59
27 14 0.41
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (27 bp):
ACCAAAATATTATAATTTTTTTTATTT
Found at i:26393123 original size:27 final size:27
Alignment explanation
Indices: 26393092--26393158 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
26393082 TGCCAAGGTG
*
26393092 ATTGGCGGCACCAAAGGTGTCAAAGCC
1 ATTGGCGGCACCAAAGGTGCCAAAGCC
* *
26393119 ATTGGCGGCACCAAATGTGCCAAAGCT
1 ATTGGCGGCACCAAAGGTGCCAAAGCC
26393146 ATTGGCGGCACCA
1 ATTGGCGGCACCA
26393159 GTGCTATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.28, C:0.27, G:0.28, T:0.16
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAGCC
Found at i:26393229 original size:23 final size:24
Alignment explanation
Indices: 26393203--26393261 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 24
26393193 AGAAGGAGAG
*
26393203 GGAAAGAAAGAA-AGAAAGAAAAA
1 GGAAAGAAAGAAGAGAAAAAAAAA
*
26393226 GGAAAG-GAGAAGAGAAAAAAAAA
1 GGAAAGAAAGAAGAGAAAAAAAAA
*
26393249 AGAAAG-AAGAAGA
1 GGAAAGAAAGAAGA
26393262 AGAGGAAAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 4 0.13
23 27 0.87
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (24 bp):
GGAAAGAAAGAAGAGAAAAAAAAA
Found at i:26393269 original size:16 final size:16
Alignment explanation
Indices: 26393248--26393300 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
26393238 AGAAAAAAAA
26393248 AAGAAAGAAGAAGAAG
1 AAGAAAGAAGAAGAAG
* *
26393264 AGGAAAGGAGAAG-AG
1 AAGAAAGAAGAAGAAG
*
26393279 AAAAAACGAAGAAGAAG
1 AAGAAA-GAAGAAGAAG
26393296 AAGAA
1 AAGAA
26393301 GAGGGAAGGA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 6 0.21
16 17 0.59
17 6 0.21
ACGTcount: A:0.66, C:0.02, G:0.32, T:0.00
Consensus pattern (16 bp):
AAGAAAGAAGAAGAAG
Found at i:26393317 original size:35 final size:39
Alignment explanation
Indices: 26393209--26393326 Score: 151
Period size: 38 Copynumber: 3.2 Consensus size: 39
26393199 AGAGGGAAAG
26393209 AAAGAAAGAAAGAA-AA-AGGAAAGGAGAAGAGAAAAAAA
1 AAAGAAAG-AAGAAGAAGAGGAAAGGAGAAGAGAAAAAAA
*
26393247 AAAGAAAGAAGAAGAAGAGGAAAGGAGAAGAGAAAAAAC
1 AAAGAAAGAAGAAGAAGAGGAAAGGAGAAGAGAAAAAAA
* *
26393286 GAAG-AAGAAGAAGAAGAGGGAA-G-GAAG-G-AAAAAA
1 AAAGAAAGAAGAAGAAGAGGAAAGGAGAAGAGAAAAAAA
26393320 AAAGAAA
1 AAAGAAA
26393327 AAAAGGTAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
34 8 0.11
35 3 0.04
36 4 0.06
37 6 0.08
38 27 0.38
39 24 0.33
ACGTcount: A:0.69, C:0.01, G:0.31, T:0.00
Consensus pattern (39 bp):
AAAGAAAGAAGAAGAAGAGGAAAGGAGAAGAGAAAAAAA
Found at i:26393362 original size:17 final size:19
Alignment explanation
Indices: 26393333--26393369 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
26393323 GAAAAAAAGG
26393333 TAATTTTTATTATAA-ATT
1 TAATTTTTATTATAATATT
26393351 TAATTTTT-TTATAATATT
1 TAATTTTTATTATAATATT
26393369 T
1 T
26393370 GTGTGTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TAATTTTTATTATAATATT
Found at i:26393991 original size:35 final size:35
Alignment explanation
Indices: 26393936--26394006 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 35
26393926 AGGGCAAGGA
26393936 AAGGGTTTTTTTCGGGTTTTTTA-CAAAATATTAC
1 AAGGGTTTTTTTCGGGTTTTTTACCAAAATATTAC
26393970 AAGGGTTTTTTTCGGGTTTTTTACCAAAATATTAC
1 AAGGGTTTTTTTCGGGTTTTTTACCAAAATATTAC
26394005 AA
1 AA
26394007 AAAAAATAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 23 0.64
35 13 0.36
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.45
Consensus pattern (35 bp):
AAGGGTTTTTTTCGGGTTTTTTACCAAAATATTAC
Found at i:26394106 original size:62 final size:65
Alignment explanation
Indices: 26393975--26394106 Score: 200
Period size: 65 Copynumber: 2.1 Consensus size: 65
26393965 ATTACAAGGG
26393975 TTTTTTTCGGGTTTTTTACCAAAATATTACAAAAAAAATAAAAAAAATACCAAAATATTATAAAC
1 TTTTTTTCGGGTTTTTTACCAAAATATTACAAAAAAAATAAAAAAAATACCAAAATATTATAAAC
* * * *
26394040 TTTTTTTCGGGTTTTTTACTAAATTATTA-TAAAAAAAT-AAAAATA-ACCAAAATATTAT-AAC
1 TTTTTTTCGGGTTTTTTACCAAAATATTACAAAAAAAATAAAAAAAATACCAAAATATTATAAAC
26394101 TTTTTT
1 TTTTTT
26394107 ATTTACCAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
61 9 0.14
62 13 0.21
63 6 0.10
64 8 0.13
65 27 0.43
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.40
Consensus pattern (65 bp):
TTTTTTTCGGGTTTTTTACCAAAATATTACAAAAAAAATAAAAAAAATACCAAAATATTATAAAC
Found at i:26394118 original size:26 final size:27
Alignment explanation
Indices: 26394085--26394147 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
26394075 AATAAAAATA
*
26394085 ACCAAAATATTAT-AACTTTTTTATTT
1 ACCAAAATATTATAAAATTTTTTATTT
26394111 ACCAAAATATTATAAAATTTTTTATTT
1 ACCAAAATATTATAAAATTTTTTATTT
26394138 ACCAAAATAT
1 ACCAAAATAT
26394148 ACCAAAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
26 13 0.37
27 22 0.63
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (27 bp):
ACCAAAATATTATAAAATTTTTTATTT
Found at i:26394229 original size:27 final size:27
Alignment explanation
Indices: 26394186--26394248 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
26394176 AAAAAACCTA
*
26394186 TGGCGGCACCAAAGGTGCCAAAGTGAT
1 TGGCGGCACCAAAGGTGCCAAAGAGAT
* *
26394213 TGGCGGCACCGATGGTGCCAAAGAGAT
1 TGGCGGCACCAAAGGTGCCAAAGAGAT
26394240 TGGCGGCAC
1 TGGCGGCAC
26394249 AGGACTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.25, C:0.24, G:0.37, T:0.14
Consensus pattern (27 bp):
TGGCGGCACCAAAGGTGCCAAAGAGAT
Found at i:26394645 original size:16 final size:15
Alignment explanation
Indices: 26394620--26394649 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26394610 GTACTGAAAT
26394620 AATATAAAATAATAA
1 AATATAAAATAATAA
26394635 AATATTAAAATAATA
1 AATA-TAAAATAATA
26394650 TATTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AATATAAAATAATAA
Found at i:26397805 original size:27 final size:27
Alignment explanation
Indices: 26397764--26397824 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
26397754 TTAGTCATGC
* *
26397764 GCCGCCAATCTCTTTGGCACCATCGGT
1 GCCGCCAATCACTTTGACACCATCGGT
* *
26397791 GCCGCCAATCACTTTGACACCTTTGGT
1 GCCGCCAATCACTTTGACACCATCGGT
26397818 GCCGCCA
1 GCCGCCA
26397825 TAAGTTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.16, C:0.38, G:0.21, T:0.25
Consensus pattern (27 bp):
GCCGCCAATCACTTTGACACCATCGGT
Found at i:26397923 original size:26 final size:27
Alignment explanation
Indices: 26397864--26397927 Score: 85
Period size: 28 Copynumber: 2.4 Consensus size: 27
26397854 TATTTTTGGT
***
26397864 ATATTTTGGTAAATAAAATTTTTTTATA
1 ATATTTTGGTAAATAAAA-TAAGTTATA
26397892 ATATTTTGGTAAATAAAA-AAGTTATA
1 ATATTTTGGTAAATAAAATAAGTTATA
26397918 ATATTTTGGT
1 ATATTTTGGT
26397928 TATTTTTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 15 0.45
28 18 0.55
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAATAAGTTATA
Found at i:26398673 original size:3 final size:3
Alignment explanation
Indices: 26398667--26398764 Score: 57
Period size: 3 Copynumber: 34.3 Consensus size: 3
26398657 CCTCCTTTCC
* * *
26398667 TCT TCT TCT TCT TCT TCT TCT T-T TTT TC- TCT TCT CCT T-T CCT T-T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* * * * *
26398711 CCT T-T CCT TCT TTT TCTT TCT T-T T-T TCT TCT CCTT TCC TCT TCT
1 TCT TCT TCT TCT TCT TC-T TCT TCT TCT TCT TCT TC-T TCT TCT TCT
26398755 TCT TCT TCT T
1 TCT TCT TCT T
26398765 TCTTTTTTTT
Statistics
Matches: 72, Mismatches: 15, Indels: 16
0.70 0.15 0.16
Matches are distributed among these distances:
2 11 0.15
3 56 0.78
4 5 0.07
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:26398703 original size:41 final size:40
Alignment explanation
Indices: 26398643--26398835 Score: 188
Period size: 41 Copynumber: 4.8 Consensus size: 40
26398633 TACCTTTTTT
*
26398643 TTCTT-TTTTTTT-TC-CCTCCTTTCCTCTTCTTCTTCTTC
1 TTCTTCTTTTTTTCTCTTCTCCTTTCCT-TTCTTCTTCTTC
*
26398681 TTCTTCTTTTTTTCTCTTCTCCTTTCCTTTCCTT-TCCTTC
1 TTCTTCTTTTTTTCTCTTCTCCTTTCCTTT-CTTCTTCTTC
* *
26398721 TTTTTCTTTCTTTTTTCTTCTCCTTTCCTCTTCTTCTTCTTC
1 TTCTTCTTT-TTTTCTCTTCTCCTTTCCT-TTCTTCTTCTTC
*
26398763 TTTCTTTTTTTTTTTCTCTTCTCCTTTCCTTT-TTCTTTCTTTCC
1 -TTC-TTCTTTTTTTCTCTTCTCCTTTCCTTTCTTC-TTC-TT-C
*
26398807 TT-TTCTTTCTTTC-C-TCTCCTTT-CTTTCTT
1 TTCTTCTTTTTTTCTCTTCTCCTTTCCTTTCTT
26398836 TCTTTCTTTC
Statistics
Matches: 132, Mismatches: 10, Indels: 25
0.79 0.06 0.15
Matches are distributed among these distances:
38 9 0.07
39 17 0.13
40 18 0.14
41 46 0.35
42 12 0.09
43 24 0.18
44 6 0.05
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (40 bp):
TTCTTCTTTTTTTCTCTTCTCCTTTCCTTTCTTCTTCTTC
Found at i:26398708 original size:5 final size:5
Alignment explanation
Indices: 26398700--26398846 Score: 53
Period size: 5 Copynumber: 29.6 Consensus size: 5
26398690 TTTTCTCTTC
* * * *
26398700 TCCTT TCCTT TCCTT TCC-T TCTTT TTCTT TCTTTT TTCTT CTCCTT TCCTCT
1 TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TC-CTT TCCTT -TCCTT TCCT-T
* ** *
26398752 TCTTCTT CTTCTT T-CTT T--TT TTTTT TCTCTT CTCCTT TCCTTT TTCTT
1 TC--CTT -TCCTT TCCTT TCCTT TCCTT TC-CTT -TCCTT TCC-TT TCCTT
* *
26398800 T-CTT TCCTT TTCTT T-CTT TCCTC TCCTT T-CTT T-CTT T-CTT T-CTT
1 TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT
26398844 TCC
1 TCC
26398847 CTCTCCTTCT
Statistics
Matches: 112, Mismatches: 15, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
3 3 0.03
4 31 0.28
5 50 0.45
6 22 0.20
7 3 0.03
8 3 0.03
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (5 bp):
TCCTT
Found at i:26398784 original size:63 final size:62
Alignment explanation
Indices: 26398698--26398842 Score: 147
Period size: 63 Copynumber: 2.4 Consensus size: 62
26398688 TTTTTTCTCT
* * * *
26398698 TCTCCTTTCCTTTCCTTTCCTTCT-TTTTCTTTCTTTTTTC-TTC--TCCTTTCCTCTTC-TTCT
1 TCTCCTTT-CTTT-CTTTCTTTCTCTTCTCTTTCCTTTTTCTTTCTTTCCTTTCCT-TTCTTTCC
* * * *
26398758 TCTTCTTTCTTTTTTTTTTTCTCTTCTCCTTTCCTTTTTCTTTCTTTCCTTTTCTTTCTTTCC
1 TCTCCTTTCTTTCTTTCTTTCTCTTCT-CTTTCCTTTTTCTTTCTTTCCTTTCCTTTCTTTCC
26398821 TCTCCTTTCTTTCTTTCTTTCT
1 TCTCCTTTCTTTCTTTCTTTCT
26398843 TTCCCTCTCC
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
58 7 0.10
59 7 0.10
60 18 0.26
61 3 0.04
62 3 0.04
63 30 0.44
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (62 bp):
TCTCCTTTCTTTCTTTCTTTCTCTTCTCTTTCCTTTTTCTTTCTTTCCTTTCCTTTCTTTCC
Found at i:26398801 original size:85 final size:81
Alignment explanation
Indices: 26398635--26398818 Score: 269
Period size: 82 Copynumber: 2.2 Consensus size: 81
26398625 ATAAAAATTA
* *
26398635 CCTTTTTTTTCTTTTTTTTTTCCCTCCTTTCCTCTTCTTCTTCTTCTTCTTCTTTTTTTCTCTTC
1 CCTTCTTTTTCTTTCTTTTTTCCCTCCTTTCCTCTTCTTCTTCTTCTTCTTCTTTTTTTCTCTTC
26398700 TCCTTTCCTTTCCTTT
66 TCCTTTCCTTTCCTTT
* *
26398716 CCTTCTTTTTCTTTCTTTTTTCTTCTCCTTTCCTCTTCTTCTTCTTCTTTCTTTTTTTTTTTCTC
1 CCTTCTTTTTCTTTCTTTTTTC-CCTCCTTTCCTCTTCTTCTTCTTC-TTC-TTCTTTTTTTCTC
*
26398781 TTCTCCTTTCCTTTTTCTTT
63 TTCTCCTTTCC-TTTCCTTT
* *
26398801 CTTTCCTTTTCTTTCTTT
1 CCTTCTTTTTCTTTCTTT
26398819 CCTCTCCTTT
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
81 20 0.22
82 23 0.25
83 3 0.03
84 23 0.25
85 23 0.25
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (81 bp):
CCTTCTTTTTCTTTCTTTTTTCCCTCCTTTCCTCTTCTTCTTCTTCTTCTTCTTTTTTTCTCTTC
TCCTTTCCTTTCCTTT
Found at i:26398841 original size:36 final size:37
Alignment explanation
Indices: 26398702--26398841 Score: 114
Period size: 36 Copynumber: 3.8 Consensus size: 37
26398692 TTCTCTTCTC
* *
26398702 CTTTCCTTTCCTTTCCTTCTTTTTCTTT-C-TTT-TTT
1 CTTTCCTCTCCTTTCCTT-TCTTTCTTTCCTTTTCTTT
* *
26398737 CTTCTCCTTTCCTCTTCTTCTTC-TTCTTT-CTTTT-TTT
1 CTT-TCCTCTCCT-TTCCT-TTCTTTCTTTCCTTTTCTTT
*
26398774 TTTTCTCTTCTCCTTTCCTTTTTCTTTCTTTCCTTTTCTTT
1 CTTTC-C-TCTCCTTTCC--TTTCTTTCTTTCCTTTTCTTT
26398815 CTTTCCTCTCCTTT-CTTTCTTTCTTTC
1 CTTTCCTCTCCTTTCCTTTCTTTCTTTC
26398842 TTTCCCTCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 21
0.77 0.05 0.18
Matches are distributed among these distances:
35 3 0.03
36 30 0.34
37 17 0.19
38 10 0.11
39 15 0.17
40 6 0.07
41 7 0.08
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (37 bp):
CTTTCCTCTCCTTTCCTTTCTTTCTTTCCTTTTCTTT
Found at i:26398843 original size:85 final size:83
Alignment explanation
Indices: 26398652--26398829 Score: 235
Period size: 85 Copynumber: 2.2 Consensus size: 83
26398642 TTTCTTTTTT
26398652 TTTTCC-CTCCTTT-C-C-TCTTCTTCTTCTTCTTCTTCTTTTTTTCTCTTCTCCTTTCCTTTCC
1 TTTTCCTCTCCTTTCCTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTCTCTTCTCCTTTCCTTTCC
*
26398713 TTTCCTTCTTTTTCTTTC
66 TTTCCTTCCTTTTCTTTC
*
26398731 TTTTTTCTTCTCCTTTCCTCTTCTTCTTCTTCTTTCTT-TT-TTTTTTTCTCTTCTCCTTTCCTT
1 --TTTTCCTCTCCTTTCCTCTTCTTCTTCTTC-TTCTTCTTCTTTTTTTCTCTTCTCCTTTCC-T
* *
26398794 TTTCTTTCTTTCCTTTTCTTTC
62 TTCCTTTCCTTCCTTTTCTTTC
26398816 -TTTCCTCTCCTTTC
1 TTTTCCTCTCCTTTC
26398830 TTTCTTTCTT
Statistics
Matches: 86, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
81 5 0.06
82 20 0.23
83 1 0.01
84 22 0.26
85 33 0.38
86 5 0.06
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (83 bp):
TTTTCCTCTCCTTTCCTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTCTCTTCTCCTTTCCTTTCC
TTTCCTTCCTTTTCTTTC
Found at i:26398844 original size:79 final size:81
Alignment explanation
Indices: 26398635--26398845 Score: 242
Period size: 82 Copynumber: 2.6 Consensus size: 81
26398625 ATAAAAATTA
* *
26398635 CCTTTTTTTTCTTTT-TTT-TTTCC-CTCCTTTCCTCTTCTTC-TTC-TTCTTCTTCTTTTTTTC
1 CCTTTCTTTCCTTTTCTTTCTTTCCTCTCCTTTCCTCTTCTTCTTTCTTTCTTCTTCTTTTTTTC
26398695 TCTTCTCCTTTCCTTT
66 TCTTCTCCTTTCCTTT
* * *
26398711 CCTTTCCTTCTTTTTCTTTCTTTTTTCTTCTCCTTTCCTCTTCTTCTTCTTCTTTCTT-TT-TTT
1 CCTTTCTTTCCTTTTCTTTC---TTTCCTCTCCTTTCCTCTTCTTC-T-TTCTTTCTTCTTCTTT
26398774 TTTTCTCTTCTCCTTTCCTTTT
61 TTTTCTCTTCTCCTTTCC-TTT
*
26398796 TCTTTCTTTCCTTTTCTTTCTTTCCTCTCCTTT-CT-TTCTTTCTTTCTTTC
1 CCTTTCTTTCCTTTTCTTTCTTTCCTCTCCTTTCCTCTTC-TTCTTTCTTTC
26398846 CCTCTCCTTC
Statistics
Matches: 114, Mismatches: 9, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
76 11 0.10
77 3 0.03
79 7 0.06
80 4 0.04
81 9 0.08
82 29 0.25
84 21 0.18
85 25 0.22
86 5 0.04
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (81 bp):
CCTTTCTTTCCTTTTCTTTCTTTCCTCTCCTTTCCTCTTCTTCTTTCTTTCTTCTTCTTTTTTTC
TCTTCTCCTTTCCTTT
Found at i:26399251 original size:2 final size:2
Alignment explanation
Indices: 26399244--26399275 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
26399234 AATTAATTGT
26399244 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26399276 TAAAGAGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:26405665 original size:218 final size:218
Alignment explanation
Indices: 26405287--26406380 Score: 1974
Period size: 218 Copynumber: 5.0 Consensus size: 218
26405277 ATGAATCACC
** * * ** * *
26405287 AAACCTTACACCTTCACCTCC-TACCAGAATTTTGTGAAATGAACATTCCAACCTAATTGCAACA
1 AAACCTTACAGATTCACCCCCAT-CCAAAATTTTGCAAAATAAATATTCCAACCTAATTGCAACA
*
26405351 CCCTGGCAAATGTCACTTAATTGGAGCTTCAAATTCTAGAGGGGAAAAAGCCTAGAAAAAGATTA
65 CCTTGGCAAATGTCACTTAATTGGAGCTTCAAATTCTAGAGGGGAAAAAGCCTAGAAAAAGATTA
26405416 ACTACAGCTTTGACAGAACTGATTTCACCCATCTCTACAGACCAAGAGGCACTTTGCATTCATCA
130 ACTACAGCTTTGACAGAACTGATTTCACCCATCTCTACAGACCAAGAGGCACTTTGCATTCATCA
26405481 TGGTCTAGTGTGGATTATAGAAAA
195 TGGTCTAGTGTGGATTATAGAAAA
26405505 AAACCTTACAGATTCACCCCCATCCAAAATTTTGCAAAATAAATATTCCAACCTAATTGCAACAC
1 AAACCTTACAGATTCACCCCCATCCAAAATTTTGCAAAATAAATATTCCAACCTAATTGCAACAC
26405570 CTTGGCAAATGTCACTTAATTGGAGCTTCAAATTCTAGAGGGGAAAAAGCCTAGAAAAAGATTAA
66 CTTGGCAAATGTCACTTAATTGGAGCTTCAAATTCTAGAGGGGAAAAAGCCTAGAAAAAGATTAA
26405635 CTACAGCTTTGACAGAACTGATTTCACCCATCTCTACAGACCAAGAGGCACTTTGCATTCATCAT
131 CTACAGCTTTGACAGAACTGATTTCACCCATCTCTACAGACCAAGAGGCACTTTGCATTCATCAT
26405700 GGTCTAGTGTGGATTATAGAAAA
196 GGTCTAGTGTGGATTATAGAAAA
26405723 AAACCTTACAGATTCACCCCCATCCAAAATTTTGCAAAATAAATATTCCAACCTAATTGCAACAC
1 AAACCTTACAGATTCACCCCCATCCAAAATTTTGCAAAATAAATATTCCAACCTAATTGCAACAC
26405788 CTTGGCAAATGTCACTTAATTGGAGCTTCAAATTCTAGAGGGGAAAAAGCCTAGAAAAAGATTAA
66 CTTGGCAAATGTCACTTAATTGGAGCTTCAAATTCTAGAGGGGAAAAAGCCTAGAAAAAGATTAA
26405853 CTACAGCTTTGACAGAACTGATTTCACCCATCTCTACAGACCAAGAGGCACTTTGCATTCATCAT
131 CTACAGCTTTGACAGAACTGATTTCACCCATCTCTACAGACCAAGAGGCACTTTGCATTCATCAT
26405918 GGTCTAGTGTGGATTATAGAAAA
196 GGTCTAGTGTGGATTATAGAAAA
26405941 AAACCTTACAGATTCACCCCCATCCAAAATTTTGCAAAATAAATATTCCAACCTAATTGCAACAC
1 AAACCTTACAGATTCACCCCCATCCAAAATTTTGCAAAATAAATATTCCAACCTAATTGCAACAC
26406006 CTTGGCAAATGTCACTTAATTGGAGCTTCAAATTCTAGAGGGGAAAAAGCCTAGAAAAAGATTAA
66 CTTGGCAAATGTCACTTAATTGGAGCTTCAAATTCTAGAGGGGAAAAAGCCTAGAAAAAGATTAA
26406071 CTACAGCTTTGACAGAACTGATTTCACCCATCTCTACAGACCAAGAGGCACTTTGCATTCATCAT
131 CTACAGCTTTGACAGAACTGATTTCACCCATCTCTACAGACCAAGAGGCACTTTGCATTCATCAT
26406136 GGTCTAGTGTGGATTATAGAAAA
196 GGTCTAGTGTGGATTATAGAAAA
26406159 AAACCTTACAGATTCACCCCCATCCAAAATTTTGCAAAATAAATATTCCAACCTAATTGCAACAC
1 AAACCTTACAGATTCACCCCCATCCAAAATTTTGCAAAATAAATATTCCAACCTAATTGCAACAC
* * **
26406224 CTTGGCAAATGTCACTTAATTGGAGCTTCAAACTCTAGAGGGGAAAAATCCCGGAAAAAGATTTA
66 CTTGGCAAATGTCACTTAATTGGAGCTTCAAATTCTAGAGGGGAAAAAGCCTAGAAAAAGA-TTA
* * * *
26406289 ACTACAGCTTTGACAGAACTGATTTCACACACCTCTACAGATCAAGTGGCACTTTGCATTCATCA
130 ACTACAGCTTTGACAGAACTGATTTCACCCATCTCTACAGACCAAGAGGCACTTTGCATTCATCA
* * **
26406354 CGGTCTAGTGTGAATTATTTAAAA
195 TGGTCTAGTGTGGATTATAGAAAA
26406378 AAA
1 AAA
26406381 AAAAAAAAAC
Statistics
Matches: 853, Mismatches: 21, Indels: 3
0.97 0.02 0.00
Matches are distributed among these distances:
218 765 0.90
219 88 0.10
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.26
Consensus pattern (218 bp):
AAACCTTACAGATTCACCCCCATCCAAAATTTTGCAAAATAAATATTCCAACCTAATTGCAACAC
CTTGGCAAATGTCACTTAATTGGAGCTTCAAATTCTAGAGGGGAAAAAGCCTAGAAAAAGATTAA
CTACAGCTTTGACAGAACTGATTTCACCCATCTCTACAGACCAAGAGGCACTTTGCATTCATCAT
GGTCTAGTGTGGATTATAGAAAA
Found at i:26408349 original size:108 final size:110
Alignment explanation
Indices: 26408158--26408389 Score: 432
Period size: 108 Copynumber: 2.1 Consensus size: 110
26408148 AATTATTATA
*
26408158 TAATTTAAAATATTATTTTTTATGAAATTTATTAAATATTTAATTGAATTAATGTTACGAATCAA
1 TAATTTAAAATAATATTTTTTATGAAATTTATTAAATATTTAATTGAATTAATGTTACGAATCAA
26408223 TAACTTTTACTTAAATGACATTTTAGCTGGAAAC-TAAACTTGAT
66 TAACTTTTACTTAAATGACATTTTAGCTGGAAACTTAAACTTGAT
26408267 T-ATTTAAAATAATATTTTTTATGAAATTTATTAAATATTTAATTGAATTAATGTTACGAATCAA
1 TAATTTAAAATAATATTTTTTATGAAATTTATTAAATATTTAATTGAATTAATGTTACGAATCAA
26408331 TAACTTTTACTTAAATGACATTTTAGCTGGAAACTTAAACTTGAT
66 TAACTTTTACTTAAATGACATTTTAGCTGGAAACTTAAACTTGAT
*
26408376 TAATTTAAAGTAAT
1 TAATTTAAAATAAT
26408390 TCACTTTGAT
Statistics
Matches: 119, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
108 96 0.81
109 12 0.10
110 11 0.09
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.44
Consensus pattern (110 bp):
TAATTTAAAATAATATTTTTTATGAAATTTATTAAATATTTAATTGAATTAATGTTACGAATCAA
TAACTTTTACTTAAATGACATTTTAGCTGGAAACTTAAACTTGAT
Found at i:26409229 original size:18 final size:20
Alignment explanation
Indices: 26409188--26409231 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
26409178 AATATAATCA
*
26409188 TATCATATTTATAAATACAT
1 TATCATAATTATAAATACAT
26409208 TATCATAATT-TAAATA-AT
1 TATCATAATTATAAATACAT
26409226 TATCAT
1 TATCAT
26409232 TTATTGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.35
19 6 0.26
20 9 0.39
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (20 bp):
TATCATAATTATAAATACAT
Found at i:26416464 original size:26 final size:26
Alignment explanation
Indices: 26416416--26416465 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
26416406 TGGTAATGTA
*
26416416 TTAAATATTTTTTTCCATTAAATTTG
1 TTAAATATTTTTTTCCATAAAATTTG
*
26416442 TTAAATTTTTTTTTCTCA-AAAATT
1 TTAAATATTTTTTTC-CATAAAATT
26416466 GTTGGATTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.32, C:0.08, G:0.02, T:0.58
Consensus pattern (26 bp):
TTAAATATTTTTTTCCATAAAATTTG
Found at i:26418276 original size:31 final size:31
Alignment explanation
Indices: 26418241--26418306 Score: 91
Period size: 31 Copynumber: 2.1 Consensus size: 31
26418231 ATTTACTTAA
26418241 ATGTATACAAT-TGAATTAAAAGT-AAAGTTTC
1 ATGTATA-AATCTGAATTAAAA-TCAAAGTTTC
*
26418272 ATGTATAAATCTGAATTACAATCAAAGTTTC
1 ATGTATAAATCTGAATTAAAATCAAAGTTTC
26418303 ATGT
1 ATGT
26418307 GTATAATTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 4 0.12
31 28 0.88
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (31 bp):
ATGTATAAATCTGAATTAAAATCAAAGTTTC
Found at i:26428251 original size:156 final size:158
Alignment explanation
Indices: 26427938--26428251 Score: 436
Period size: 159 Copynumber: 2.0 Consensus size: 158
26427928 CTCCAGCACC
* *
26427938 GGCACCGGCTCCACCACCGGCTGGCTTAAATGGAAGTTCTAGCAGTAGTGTTAGCTTGGTTAGCA
1 GGCACCGGCTCCACCACCGGCTGGCTTAAATGGAAGTTCTAGCAGTAGTGTCAGCCTGGTTAGCA
* * *
26428003 GTGGTTGTAGCAGCAGCAGCAGCAGCAGCAGTGTATTTTCGAGCTTATTTACATCCACTACTGTA
66 GTGGTTGTAGCAGCAGCAGCAGCAGCAG-AGTGTATTTGCAAGCTTATTTACATCCACGACTGTA
* *
26428068 TCTGCGAGCATACACCCTCCTCAACCTCT
130 TCTGCAAGCATACAACCTCCTCAACCTCT
* * * *
26428097 GGCACCGGCTCCACCACTGGTTGGCTTAAATGGAAGTTGTAGCGGTAGTGTCAGCCTGGTTAGCA
1 GGCACCGGCTCCACCACCGGCTGGCTTAAATGGAAGTTCTAGCAGTAGTGTCAGCCTGGTTAGCA
* * * * * *
26428162 GTGG-TGCTAGCAGCAGTAGCAGTAG-TG-GTGTATTTGCAAGCTTATTTGCCTCCTCGACTGTA
66 GTGGTTG-TAGCAGCAGCAGCAGCAGCAGAGTGTATTTGCAAGCTTATTTACATCCACGACTGTA
26428224 TCTGCAAGCATACAACCTCCTCAACCTC
130 TCTGCAAGCATACAACCTCCTCAACCTC
26428252 CGGCTTTAAC
Statistics
Matches: 137, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
156 55 0.40
158 3 0.02
159 79 0.58
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.27
Consensus pattern (158 bp):
GGCACCGGCTCCACCACCGGCTGGCTTAAATGGAAGTTCTAGCAGTAGTGTCAGCCTGGTTAGCA
GTGGTTGTAGCAGCAGCAGCAGCAGCAGAGTGTATTTGCAAGCTTATTTACATCCACGACTGTAT
CTGCAAGCATACAACCTCCTCAACCTCT
Found at i:26435579 original size:156 final size:153
Alignment explanation
Indices: 26435269--26435572 Score: 382
Period size: 156 Copynumber: 2.0 Consensus size: 153
26435259 TTAAAGGAGG
* * * * *
26435269 AGGTTGAGGAGGTTGTATGCTTGCAGATACAGTTGAGGAGGCAAATAAACTTGCAAATACACCAC
1 AGGTTGAGGAGGTCGAATGCTTGCAGATACAGTCGAGGAGGCAAATAAACTCGAAAATACACCAC
* **
26435334 TGCTGCTGCTATTGCTAGCACCACTGCTAACCAGGCTGATGCAACCGCTACAACTTCCATTTAAG
66 TGCTGCTGCTA-T-CTA-CACCACTGCTAACCAAGCTGACACAACCGCTACAACTTCCATTTAAG
26435399 CCAGCCGATGGTGGAGCTGGTGCCGT
128 CCAGCCGATGGTGGAGCTGGTGCCGT
* * *
26435425 AGGTTGAGGAGGTCGAATGCTTGCAGATACAGTCGAGGAGGTAAATAAGCTCGAAAATACACCGC
1 AGGTTGAGGAGGTCGAATGCTTGCAGATACAGTCGAGGAGGCAAATAAACTCGAAAATACACCAC
* * ** *
26435490 TGCTGCTGCTA-C-A-ACCACTGCTAATCAAGCTGACACTAGTGCTACAACTTCCATTTAAGCTA
66 TGCTGCTGCTATCTACACCACTGCTAACCAAGCTGACACAACCGCTACAACTTCCATTTAAGCCA
* *
26435552 GCTGGA-GGTGGAGCCGGTGCC
131 GC-CGATGGTGGAGCTGGTGCC
26435573 AGTGCCGGAG
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
150 57 0.44
151 2 0.02
152 1 0.01
153 1 0.01
156 68 0.53
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (153 bp):
AGGTTGAGGAGGTCGAATGCTTGCAGATACAGTCGAGGAGGCAAATAAACTCGAAAATACACCAC
TGCTGCTGCTATCTACACCACTGCTAACCAAGCTGACACAACCGCTACAACTTCCATTTAAGCCA
GCCGATGGTGGAGCTGGTGCCGT
Found at i:26435589 original size:12 final size:12
Alignment explanation
Indices: 26435574--26435609 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
26435564 GCCGGTGCCA
*
26435574 GTGCCGGAGCTG
1 GTGCTGGAGCTG
26435586 GTGCTGGAGCTG
1 GTGCTGGAGCTG
26435598 GTGCTGGAGCTG
1 GTGCTGGAGCTG
26435610 CAGCTTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.08, C:0.19, G:0.50, T:0.22
Consensus pattern (12 bp):
GTGCTGGAGCTG
Found at i:26440322 original size:17 final size:18
Alignment explanation
Indices: 26440300--26440334 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
26440290 ACAAAAACCC
26440300 AAAATCCAAAAT-GAAAA
1 AAAATCCAAAATCGAAAA
*
26440317 AAAATCGAAAATCGAAAA
1 AAAATCCAAAATCGAAAA
26440335 CCGAATCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.69, C:0.11, G:0.09, T:0.11
Consensus pattern (18 bp):
AAAATCCAAAATCGAAAA
Found at i:26444240 original size:83 final size:72
Alignment explanation
Indices: 26444063--26444248 Score: 237
Period size: 83 Copynumber: 2.4 Consensus size: 72
26444053 GCATAGTGCA
*
26444063 CTAAAGATCGATAAAAATTGACCATTGGACACACCCACATAAATACATGCATGCATACATATATA
1 CTAAAGATCGAT-AAAATTGACCATTGGACACACCCACAAAAATACATGCATGCATACATATATA
26444128 TACGCGCG
65 TACGCGCG
26444136 CTAAAGATCGATAAAAGTTGACCATTGGACACACACACACAAAAATGCATGCATGCATGCATACA
1 CTAAAGATCGATAAAA-TTGACCATTGGACACAC-C-CACAAAAAT--A--CATGCATGCATACA
26444201 TATATATACCCACGCGCG
59 TATATAT----ACGCGCG
*
26444219 CTAAAGATTGATAGAAATTGACCATTGGAC
1 CTAAAGATCGATA-AAATTGACCATTGGAC
26444249 CTCATTTGGC
Statistics
Matches: 99, Mismatches: 2, Indels: 14
0.86 0.02 0.12
Matches are distributed among these distances:
72 4 0.04
73 29 0.29
74 1 0.01
75 8 0.08
77 1 0.01
79 21 0.21
83 32 0.32
84 3 0.03
ACGTcount: A:0.40, C:0.23, G:0.16, T:0.22
Consensus pattern (72 bp):
CTAAAGATCGATAAAATTGACCATTGGACACACCCACAAAAATACATGCATGCATACATATATAT
ACGCGCG
Found at i:26446737 original size:24 final size:24
Alignment explanation
Indices: 26446692--26446737 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
26446682 ATATGAGAAG
**
26446692 AGAGAAAAATAAAAGGGAAAAAGA
1 AGAGAAAAATAAAAGAAAAAAAGA
26446716 AGAGAAAAAT-AAAGAAATAAAA
1 AGAGAAAAATAAAAGAAA-AAAA
26446738 AAAAATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.07
Consensus pattern (24 bp):
AGAGAAAAATAAAAGAAAAAAAGA
Found at i:26448703 original size:2 final size:2
Alignment explanation
Indices: 26448696--26448727 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
26448686 ATTTCAGATA
26448696 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26448728 TGAACCTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26451477 original size:19 final size:20
Alignment explanation
Indices: 26451432--26451487 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 20
26451422 TTTTCACCAA
*
26451432 AAAATTTCTAAATTA-TTATT
1 AAAATTT-TAAATAATTTATT
*
26451452 AAGATTTTAAATAATTTA-T
1 AAAATTTTAAATAATTTATT
*
26451471 AAAATTTAAAATTAATT
1 AAAATTTTAAA-TAATT
26451488 GAATCTTCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (20 bp):
AAAATTTTAAATAATTTATT
Found at i:26464293 original size:2 final size:2
Alignment explanation
Indices: 26464286--26464325 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
26464276 AATGCATGAC
*
26464286 TA TA TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26464326 CACCTCGGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26468950 original size:10 final size:10
Alignment explanation
Indices: 26468935--26468960 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
26468925 GTCTAAATAG
26468935 GTATATGTAT
1 GTATATGTAT
26468945 GTATATGTAT
1 GTATATGTAT
26468955 GTATAT
1 GTATAT
26468961 TTGTCCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (10 bp):
GTATATGTAT
Found at i:26478247 original size:27 final size:28
Alignment explanation
Indices: 26478208--26478262 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
26478198 TACAGGTAGC
*
26478208 TAAAAAACATTTACTAATAGTTAAGTGA
1 TAAAAAACATTTACTAATAATTAAGTGA
*
26478236 TAAAAAA-ATTTACTAATAATTGAGTGA
1 TAAAAAACATTTACTAATAATTAAGTGA
26478263 CTATGAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.51, C:0.05, G:0.11, T:0.33
Consensus pattern (28 bp):
TAAAAAACATTTACTAATAATTAAGTGA
Found at i:26483767 original size:14 final size:15
Alignment explanation
Indices: 26483741--26483769 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26483731 TATAAAAACT
26483741 ATAAAATATTCAAAA
1 ATAAAATATTCAAAA
26483756 ATAAAA-ATTCAAAA
1 ATAAAATATTCAAAA
26483770 TTCAAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (15 bp):
ATAAAATATTCAAAA
Found at i:26483790 original size:21 final size:20
Alignment explanation
Indices: 26483734--26483803 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 20
26483724 TAAATAATAT
*
26483734 AAAAACTATAAAATATTCAAA
1 AAAAAATATAAAA-ATTCAAA
*
26483755 AATAAAA-ATTCAAAATTCAAA
1 AA-AAAATA-TAAAAATTCAAA
*
26483776 GAAAAATTATAAAAAGTTCATAA
1 -AAAAAATATAAAAA-TTCA-AA
26483799 AAAAA
1 AAAAA
26483804 GAAAAGAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
21 18 0.46
22 19 0.49
23 2 0.05
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAAAATATAAAAATTCAAA
Found at i:26484248 original size:21 final size:21
Alignment explanation
Indices: 26484224--26484271 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
26484214 TTTAAAATTA
26484224 ATTTTTCATTTTTGGTCCTTG
1 ATTTTTCATTTTTGGTCCTTG
26484245 ATTTTTCATTTTTGGTCCTTG
1 ATTTTTCATTTTTGGTCCTTG
26484266 ATTTTT
1 ATTTTT
26484272 AGAATTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.10, C:0.12, G:0.12, T:0.65
Consensus pattern (21 bp):
ATTTTTCATTTTTGGTCCTTG
Found at i:26495979 original size:263 final size:262
Alignment explanation
Indices: 26495504--26496291 Score: 1188
Period size: 263 Copynumber: 3.0 Consensus size: 262
26495494 ATATAATTAC
* *
26495504 ATTGGATATGTATATTCAGCTGTGAGAATGCATACATTTATTTATATATATGTGTGATGCAATGC
1 ATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTATATATGTGTGTGATGCAATGC
* * *
26495569 TGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCTTATTTCCTAGCAGGTG
66 TGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCCATCTCCATGCTTGTTTCCTAGCAGGTG
* *
26495634 TTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTTCTTTGGACTGA
131 TTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCTGTTTTCTTTGGACCGA
* * *
26495699 GTTCGGCGGTAAATCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTACATTGACAAATGTTT
196 TTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTACATTGACAAATG-TT
26495764 TAA
260 TAA
* *
26495767 ATTGGATATGTAGATTCAGCTGTGAGAATGCATACGTTTATTTATAGATGTGTGTGATGCAATGC
1 ATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTATATATGTGTGTGATGCAATGC
*
26495832 TGTTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCCATCTCCATGCTTGTTTCCTAGCAGGTG
66 TGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCCATCTCCATGCTTGTTTCCTAGCAGGTG
* * * *
26495897 TTGTTGTACTTTAGTTTCTTAAAGTGCTATCCTTATTCTCCCTAATCCTGTTTTCTTTGGACCGA
131 TTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCTGTTTTCTTTGGACCGA
* *
26495962 TTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAGAATATTATTACATTGACAAATG-CT
196 TTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTACATTGACAAATGTTT
26496026 --
261 AA
*
26496026 -TT--ATA---CG-TTCAGCTGTGAGAATGCATACATTTATTTATATATGTGTGTGTGATGCAAT
1 ATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTATATA--TGTGTGTGATGCAAT
* *
26496084 GTTGCTATGTTATTAGTGTTGATTGAATCATTAGCCCCCCATCTCCATGCTTGTTTCCTAGCAGG
64 GCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCCATCTCCATGCTTGTTTCCTAGCAGG
*
26496149 TGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAAT-CTGGTTTTCTTTGGAC
129 TGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCT-GTTTTCTTTGGAC
* * ** *
26496213 CGATTTCGACAATGAATTAGAATTCTTTGTTACCTT--AAAAAAATATTATTACATTGACAAATG
193 CGATTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTACATTGACAAATG
26496276 CTTTAA
258 -TTTAA
26496282 ATTGGATATG
1 ATTGGATATG
26496292 CTTGTTTTTT
Statistics
Matches: 476, Mismatches: 37, Indels: 26
0.88 0.07 0.05
Matches are distributed among these distances:
252 58 0.12
253 3 0.01
254 165 0.35
256 3 0.01
257 2 0.00
258 2 0.00
259 3 0.01
261 1 0.00
263 239 0.50
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (262 bp):
ATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTATATATGTGTGTGATGCAATGC
TGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCCATCTCCATGCTTGTTTCCTAGCAGGTG
TTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCTGTTTTCTTTGGACCGA
TTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTACATTGACAAATGTTT
AA
Found at i:26496174 original size:254 final size:250
Alignment explanation
Indices: 26495781--26496280 Score: 804
Period size: 254 Copynumber: 2.0 Consensus size: 250
26495771 GATATGTAGA
* * *
26495781 TTCAGCTGTGAGAATGCATACGTTTATTTATAGATGTGTGTGATGCAATGCTGTTATGTTCTTAG
1 TTCAGCTGTGAGAATGCATACATTTATTTATATATGTGTGTGATGCAATGCTGCTATGTTCTTAG
26495846 TGTTGATTGAATCATTAGCCCCCCATCTCCATGCTTGTTTCCTAGCAGGTGTTGTTGTACTTTAG
66 TGTTGATTGAATCATTAGCCCCCCATCTCCATGCTTGTTTCCTAGCAGGTGTTGTTGTACTTTAG
* * * * *
26495911 TTTCTTAAAGTGCTATCCTTATTCTCCCTAATCCTGTTTTCTTTGGACCGATTTCGGCGATGAAT
131 TCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTTCTTTGGACCGATTTCGGCGATGAAT
26495976 CGGAACTCTTTGTTACCTTGAAAAAGAATATTATTACATTGACAAATGCTTTATACG
196 CGGAACTCTTTGTTACCTTGAAAAA-AATATTATTACATTGACAAATGCTTTATA-G
* *
26496033 TTCAGCTGTGAGAATGCATACATTTATTTATATATGTGTGTGTGATGCAATGTTGCTATGTTATT
1 TTCAGCTGTGAGAATGCATACATTTATTTATATA--TGTGTGTGATGCAATGCTGCTATGTTCTT
*
26496098 AGTGTTGATTGAATCATTAGCCCCCCATCTCCATGCTTGTTTCCTAGCAGGTGGTGTTGTACTTT
64 AGTGTTGATTGAATCATTAGCCCCCCATCTCCATGCTTGTTTCCTAGCAGGTGTTGTTGTACTTT
* * *
26496163 AGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCTGGTTTTCTTTGGACCGATTTCGACAATGA
129 AGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTTCTTTGGACCGATTTCGGCGATGA
** *
26496228 ATTAGAATTCTTTGTTACCTT-AAAAAAATATTATTACATTGACAAATGCTTTA
194 ATCGGAACTCTTTGTTACCTTGAAAAAAATATTATTACATTGACAAATGCTTTA
26496281 AATTGGATAT
Statistics
Matches: 229, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
252 59 0.26
253 5 0.02
254 165 0.72
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (250 bp):
TTCAGCTGTGAGAATGCATACATTTATTTATATATGTGTGTGATGCAATGCTGCTATGTTCTTAG
TGTTGATTGAATCATTAGCCCCCCATCTCCATGCTTGTTTCCTAGCAGGTGTTGTTGTACTTTAG
TCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTTCTTTGGACCGATTTCGGCGATGAAT
CGGAACTCTTTGTTACCTTGAAAAAAATATTATTACATTGACAAATGCTTTATAG
Found at i:26504370 original size:70 final size:70
Alignment explanation
Indices: 26504257--26504396 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
26504247 CAACCGGAGA
26504257 GCGAAGACAACCCCTTGGGTACTCTAGCAATGACATGCCTCACCGTATTTATGGCGTATCGGTTT
1 GCGAAGACAACCCCTTGGGTACTCTAGCAATGACATGCCTCACCGTATTTATGGCGTATCGGTTT
26504322 TACAT
66 TACAT
26504327 GCGAAGACAACCCCTTGGGTACTCTAGCAATGACATGCCTCACCGTATTTATGGCGTATCGGTTT
1 GCGAAGACAACCCCTTGGGTACTCTAGCAATGACATGCCTCACCGTATTTATGGCGTATCGGTTT
26504392 TACAT
66 TACAT
26504397 TCCGATTTAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (70 bp):
GCGAAGACAACCCCTTGGGTACTCTAGCAATGACATGCCTCACCGTATTTATGGCGTATCGGTTT
TACAT
Done.