Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold448
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 460345
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.30
Warning! 41382 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:273882 original size:18 final size:18
Alignment explanation
Indices: 273859--273896 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
273849 AGAAATAGAT
*
273859 GAAAAATACTTGAA-GAAA
1 GAAAAACACTT-AATGAAA
273877 GAAAAACACTTAATGAAA
1 GAAAAACACTTAATGAAA
273895 GA
1 GA
273897 CTTAATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.61, C:0.08, G:0.16, T:0.16
Consensus pattern (18 bp):
GAAAAACACTTAATGAAA
Found at i:274778 original size:12 final size:12
Alignment explanation
Indices: 274754--274800 Score: 60
Period size: 12 Copynumber: 3.9 Consensus size: 12
274744 ACCAGAGGAG
274754 TATTTTTAT-TTT
1 TATTTTT-TGTTT
274766 TATTTTTTGTTT
1 TATTTTTTGTTT
*
274778 TGTTTTTTGTTT
1 TATTTTTTGTTT
*
274790 TTTTTTTTGTT
1 TATTTTTTGTT
274801 GAAAAGATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
11 1 0.03
12 31 0.97
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (12 bp):
TATTTTTTGTTT
Found at i:274784 original size:19 final size:19
Alignment explanation
Indices: 274762--274800 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
274752 AGTATTTTTA
274762 TTTTTATTTTTTGTTTTGT
1 TTTTTATTTTTTGTTTTGT
* *
274781 TTTTTGTTTTTTTTTTTGT
1 TTTTTATTTTTTGTTTTGT
274800 T
1 T
274801 GAAAAGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (19 bp):
TTTTTATTTTTTGTTTTGT
Found at i:275342 original size:7 final size:6
Alignment explanation
Indices: 275325--275387 Score: 56
Period size: 6 Copynumber: 10.3 Consensus size: 6
275315 ATGTTTCCTG
* * *
275325 TAAAAA TAAAAA TGAAAA T-AAAA TAAAATA GTAAAAA TAATAA TAATAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAA-A -TAAAAA TAAAAA TAAAAA
* *
275374 TAATAA TAATAA TA
1 TAAAAA TAAAAA TA
275388 TAGAAAAATT
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
5 5 0.10
6 40 0.77
7 2 0.04
8 5 0.10
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.25
Consensus pattern (6 bp):
TAAAAA
Found at i:275368 original size:3 final size:3
Alignment explanation
Indices: 275341--275387 Score: 62
Period size: 3 Copynumber: 16.3 Consensus size: 3
275331 TAAAAATGAA
* *
275341 AAT AA- AAT AA- AAT AGT AAA AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
275387 A
1 A
275388 TAGAAAAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:276223 original size:337 final size:337
Alignment explanation
Indices: 275597--276267 Score: 1243
Period size: 337 Copynumber: 2.0 Consensus size: 337
275587 CATGCATTTT
*
275597 CATTTTCCATTTTACCAAAAATTTTTTTTGCATAAAGGAAAAGAAAATTTGGGTTGCCTCCCAAC
1 CATTTTCCATTTTACCAAAAATTTTATTTGCATAAAGGAAAAGAAAATTTGGGTTGCCTCCCAAC
* *
275662 AGCGCTTTGTTTAACGTCGTTAAGCTCGACGACCTGTTATTCAAGCTCTAGGCTCCTCGAGAATA
66 AACGCTTTGTTTAACGTCGTTAAGCTCGACAACCTGTTATTCAAGCTCTAGGCTCCTCGAGAATA
*
275727 ATCTCCTCAACTGTGTGTGTTTAAAATTCTCGTAAAAGGGTTTCAGTCGTTGACCATTCTCCTTA
131 ATCTCCTCAACTGTGTGTGTTTAAAATTCTCGTAAAAGGGTTTCAGCCGTTGACCATTCTCCTTA
275792 AAGCACTTCCGGGTTTCTTCGCTTTGAATTTCCACAGCTAATCGCTTGAGCATTTAATCGATGAA
196 AAGCACTTCCGGGTTTCTTCGCTTTGAATTTCCACAGCTAATCGCTTGAGCATTTAATCGATGAA
*
275857 GGGAAGTGGAAAATGGTATTTTTGGGTAGCTGCATTCAACTTCCTATAATCGATGCAAACCCTCC
261 GGGAAGTGGAAAATGGTATTTTCGGGTAGCTGCATTCAACTTCCTATAATCGATGCAAACCCTCC
275922 ATCCATTCTAGA
326 ATCCATTCTAGA
275934 CATTTTCCATTTTACCAAAAATTTTATTTGCATAAAGGAAAAGAAAATTTGGGTTGCCTCCCAAC
1 CATTTTCCATTTTACCAAAAATTTTATTTGCATAAAGGAAAAGAAAATTTGGGTTGCCTCCCAAC
*
275999 AACGCTTTGTTTAACGTCGTTAAGCTCGACAACCTGTTATTCAAGCTCTGGGCTCCTCGAGAATA
66 AACGCTTTGTTTAACGTCGTTAAGCTCGACAACCTGTTATTCAAGCTCTAGGCTCCTCGAGAATA
*
276064 ATCTCCTCAACTGTGTGTGTTTAAAATTCTTGTAAAAGGGTTTCAGCCGTTGACCATTCTCCTTA
131 ATCTCCTCAACTGTGTGTGTTTAAAATTCTCGTAAAAGGGTTTCAGCCGTTGACCATTCTCCTTA
*
276129 AAGCACTTCCGGGTTTCTTCGCTTTGAATTTCCACAGCTAATCGCTTGAGCATTTGATCGATGAA
196 AAGCACTTCCGGGTTTCTTCGCTTTGAATTTCCACAGCTAATCGCTTGAGCATTTAATCGATGAA
* **
276194 GGGAAGTGGAAAATGGTCTTTTCGGGTAGCTGCATTCAACTTCCTATAATCGATGCAAACTTTCC
261 GGGAAGTGGAAAATGGTATTTTCGGGTAGCTGCATTCAACTTCCTATAATCGATGCAAACCCTCC
276259 ATCCATTCT
326 ATCCATTCT
276268 GGACTCGGGT
Statistics
Matches: 323, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
337 323 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (337 bp):
CATTTTCCATTTTACCAAAAATTTTATTTGCATAAAGGAAAAGAAAATTTGGGTTGCCTCCCAAC
AACGCTTTGTTTAACGTCGTTAAGCTCGACAACCTGTTATTCAAGCTCTAGGCTCCTCGAGAATA
ATCTCCTCAACTGTGTGTGTTTAAAATTCTCGTAAAAGGGTTTCAGCCGTTGACCATTCTCCTTA
AAGCACTTCCGGGTTTCTTCGCTTTGAATTTCCACAGCTAATCGCTTGAGCATTTAATCGATGAA
GGGAAGTGGAAAATGGTATTTTCGGGTAGCTGCATTCAACTTCCTATAATCGATGCAAACCCTCC
ATCCATTCTAGA
Found at i:280009 original size:12 final size:12
Alignment explanation
Indices: 279988--280110 Score: 61
Period size: 12 Copynumber: 9.8 Consensus size: 12
279978 TAAAACGAAA
*
279988 TGATTAAAAACT
1 TGATGAAAAACT
* *
280000 TGATGGAAAATT
1 TGATGAAAAACT
*
280012 TTATGAAAAGACT
1 TGATGAAAA-ACT
*
280025 AGATGAAAAACT
1 TGATGAAAAACT
* *
280037 TTA-AAAAGAACT
1 TGATGAAA-AACT
* *
280049 TGCTGCAAAACT
1 TGATGAAAAACT
280061 TGAT-AGAAAACT
1 TGATGA-AAAACT
*
280073 TGGTAATTAAAAACT
1 T-G--ATGAAAAACT
*
280088 TGATAAAAGAACT
1 TGATGAAA-AACT
*
280101 AGATGAAAAA
1 TGATGAAAAA
280111 TACTTGAAGA
Statistics
Matches: 82, Mismatches: 20, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
11 3 0.04
12 46 0.56
13 22 0.27
14 1 0.01
15 9 0.11
16 1 0.01
ACGTcount: A:0.50, C:0.08, G:0.15, T:0.26
Consensus pattern (12 bp):
TGATGAAAAACT
Found at i:280039 original size:25 final size:24
Alignment explanation
Indices: 279993--280039 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
279983 CGAAATGATT
* * *
279993 AAAAACTTGATGGAAAATTTTATG
1 AAAAACTAGATGAAAAACTTTATG
280017 AAAAGACTAGATGAAAAACTTTA
1 AAAA-ACTAGATGAAAAACTTTA
280040 AAAAGAACTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 4 0.21
25 15 0.79
ACGTcount: A:0.51, C:0.06, G:0.15, T:0.28
Consensus pattern (24 bp):
AAAAACTAGATGAAAAACTTTATG
Found at i:280128 original size:18 final size:18
Alignment explanation
Indices: 280105--280142 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
280095 AGAACTAGAT
*
280105 GAAAAATACTTGAA-GAAA
1 GAAAAACACTT-AATGAAA
280123 GAAAAACACTTAATGAAA
1 GAAAAACACTTAATGAAA
280141 GA
1 GA
280143 CTTAATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.61, C:0.08, G:0.16, T:0.16
Consensus pattern (18 bp):
GAAAAACACTTAATGAAA
Found at i:282944 original size:8 final size:8
Alignment explanation
Indices: 282933--282967 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
282923 TTTTTAATTC
282933 TTTATTAT
1 TTTATTAT
282941 TTTATTAT
1 TTTATTAT
*
282949 TTTATCAT
1 TTTATTAT
282957 TTTATTAT
1 TTTATTAT
282965 TTT
1 TTT
282968 CTTTAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTATTAT
Found at i:284945 original size:90 final size:89
Alignment explanation
Indices: 284784--284962 Score: 270
Period size: 90 Copynumber: 2.0 Consensus size: 89
284774 CATTTTGTTT
* *
284784 AGTGAATTTAGCTAAACAATTAAATGAAAAGAAAGTCAAATATATGTTTGTTTCATTTAAAATAA
1 AGTGAATTTAGCTAAACAATTAAAAGAAAAAAAAGTCAAATATATGTTTGTTTCATTTAAAATAA
284849 CTTTTTTGAAATATTTTCA-AGAA
66 CTTTTTTGAAATATTTTCAGAGAA
* * * *
284872 AGTGAATTTAGCTAAACAATTAAAAGACAAGAAAAATTCAAATGTATGTTTGTTTCGTTTATAAT
1 AGTGAATTTAGCTAAACAATTAAAAGA-AA-AAAAAGTCAAATATATGTTTGTTTCATTTAAAAT
*
284937 AGCTTTTTTGAAATATTTTCAGAGAA
64 AACTTTTTTGAAATATTTTCAGAGAA
284963 TCTACCAAAC
Statistics
Matches: 81, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
88 26 0.32
89 2 0.02
90 49 0.60
91 4 0.05
ACGTcount: A:0.42, C:0.07, G:0.13, T:0.37
Consensus pattern (89 bp):
AGTGAATTTAGCTAAACAATTAAAAGAAAAAAAAGTCAAATATATGTTTGTTTCATTTAAAATAA
CTTTTTTGAAATATTTTCAGAGAA
Found at i:288453 original size:11 final size:10
Alignment explanation
Indices: 288436--288464 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
288426 GTTTTAGAAA
288436 GAAAAAAATC
1 GAAAAAAATC
288446 GAAAAAAATC
1 GAAAAAAATC
288456 GAAAAAAAT
1 GAAAAAAAT
288465 ATTTATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.72, C:0.07, G:0.10, T:0.10
Consensus pattern (10 bp):
GAAAAAAATC
Found at i:288937 original size:20 final size:20
Alignment explanation
Indices: 288914--288966 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
288904 TGATTTCGGG
288914 AAAATGTTTTACTTTTCTGT
1 AAAATGTTTTACTTTTCTGT
288934 AAAATGTTTTACTTTTCTGT
1 AAAATGTTTTACTTTTCTGT
*
288954 AAAATGATTTACT
1 AAAATGTTTTACT
288967 GGAAAATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.51
Consensus pattern (20 bp):
AAAATGTTTTACTTTTCTGT
Found at i:291968 original size:13 final size:13
Alignment explanation
Indices: 291950--291976 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
291940 TCATTATTTC
291950 TTTTATTTTTTAT
1 TTTTATTTTTTAT
291963 TTTTATTTTTTAT
1 TTTTATTTTTTAT
291976 T
1 T
291977 GTTGAAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:293008 original size:71 final size:70
Alignment explanation
Indices: 292870--293039 Score: 175
Period size: 71 Copynumber: 2.4 Consensus size: 70
292860 CAATCAAGTG
* *
292870 CTACTGATACCTTGAAGGCTTCTATCGAAACAAGTCAACTCAATAGGCAAAGTTCAGCATCTCCT
1 CTACTAATACCTTGAAGGCTTCTATCGAAACAAGTCAACTCAATAGCCAAAGTTCA-CATCTCCT
*
292935 GCATTT
65 GCACTT
* * *
292941 CTACTAATACCTTG-AGGACTTCTA-CTGAAACAAGTCAAGTCAGTAGCCAAAGTTCA-ATTTCC
1 CTACTAATACCTTGAAGG-CTTCTATC-GAAACAAGTCAACTCAATAGCCAAAGTTCACATCT-C
293003 TCTGCACTT
63 -CTGCACTT
** * * *
293012 CTACCGATACTTTGATGGGTTCTATCGA
1 CTACTAATACCTTGAAGGCTTCTATCGA
293040 TACCAAATGA
Statistics
Matches: 82, Mismatches: 11, Indels: 12
0.78 0.10 0.11
Matches are distributed among these distances:
69 3 0.04
70 5 0.06
71 71 0.87
72 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (70 bp):
CTACTAATACCTTGAAGGCTTCTATCGAAACAAGTCAACTCAATAGCCAAAGTTCACATCTCCTG
CACTT
Found at i:293212 original size:34 final size:34
Alignment explanation
Indices: 293168--293245 Score: 147
Period size: 34 Copynumber: 2.3 Consensus size: 34
293158 CGAAGCTGCA
*
293168 GACTACATTTAATGCTGATTTTTATTGCTGCAAT
1 GACTCCATTTAATGCTGATTTTTATTGCTGCAAT
293202 GACTCCATTTAATGCTGATTTTTATTGCTGCAAT
1 GACTCCATTTAATGCTGATTTTTATTGCTGCAAT
293236 GACTCCATTT
1 GACTCCATTT
293246 TGTTTCTAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.44
Consensus pattern (34 bp):
GACTCCATTTAATGCTGATTTTTATTGCTGCAAT
Found at i:297172 original size:16 final size:15
Alignment explanation
Indices: 297142--297214 Score: 58
Period size: 16 Copynumber: 4.5 Consensus size: 15
297132 CAAAACTTTC
297142 CCCAAATAC-TAAAAT
1 CCCAAAT-CGTAAAAT
*
297157 CCCAAATTCGTCAAATT
1 CCCAAA-TCGT-AAAAT
*
297174 CCCTAAATCGTAAAAC
1 CCC-AAATCGTAAAAT
*
297190 CTCCAAATCGTGAAAT
1 C-CCAAATCGTAAAAT
297206 CCCCAAATC
1 -CCCAAATC
297215 CATAACATCC
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
15 7 0.15
16 23 0.49
17 14 0.30
18 3 0.06
ACGTcount: A:0.41, C:0.32, G:0.05, T:0.22
Consensus pattern (15 bp):
CCCAAATCGTAAAAT
Found at i:297176 original size:33 final size:33
Alignment explanation
Indices: 297139--297214 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
297129 ATTCAAAACT
*
297139 TTCCCCAAATAC-TAAAATC-CCAAATTCGTCAAA
1 TTCCCCAAAT-CGTAAAACCTCCAAA-TCGTCAAA
* *
297172 TTCCCTAAATCGTAAAACCTCCAAATCGTGAAA
1 TTCCCCAAATCGTAAAACCTCCAAATCGTCAAA
297205 -TCCCCAAATC
1 TTCCCCAAATC
297215 CATAACATCC
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 10 0.27
33 22 0.59
34 5 0.14
ACGTcount: A:0.39, C:0.32, G:0.05, T:0.24
Consensus pattern (33 bp):
TTCCCCAAATCGTAAAACCTCCAAATCGTCAAA
Found at i:298554 original size:14 final size:15
Alignment explanation
Indices: 298522--298554 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
298512 CCAAAACCAG
298522 AATGTTGTAGGCTCAA
1 AATGTTGTAGGC-CAA
298538 AATGTTGTAGG-CAA
1 AATGTTGTAGGCCAA
298552 AAT
1 AAT
298555 ACCTTACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
16 11 0.65
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.30
Consensus pattern (15 bp):
AATGTTGTAGGCCAA
Found at i:301738 original size:33 final size:33
Alignment explanation
Indices: 301664--301741 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
301654 TCTTTCTAGT
* * *
301664 TCACCTTCACCATCAGATTCTACCCATTTATCA
1 TCACCCTCCCCATCAGATTCTACCCATTTAACA
*
301697 TCACCCTCCCCATCA-ATTTCTACCCTTTTAACA
1 TCACCCTCCCCATCAGA-TTCTACCCATTTAACA
301730 TCACCCTCCCCA
1 TCACCCTCCCCA
301742 ACAGTCAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 1 0.03
33 39 0.98
ACGTcount: A:0.24, C:0.44, G:0.01, T:0.31
Consensus pattern (33 bp):
TCACCCTCCCCATCAGATTCTACCCATTTAACA
Found at i:303927 original size:13 final size:13
Alignment explanation
Indices: 303909--303935 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
303899 ATATGAATAC
303909 AAGTAATAGTAAA
1 AAGTAATAGTAAA
303922 AAGTAATAGTAAA
1 AAGTAATAGTAAA
303935 A
1 A
303936 TAAAGTGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.15, T:0.22
Consensus pattern (13 bp):
AAGTAATAGTAAA
Found at i:304563 original size:17 final size:18
Alignment explanation
Indices: 304541--304575 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
304531 ATCCATATTC
304541 AATAA-TAAATATATAAA
1 AATAATTAAATATATAAA
*
304558 AATAATTAAATTTATAAA
1 AATAATTAAATATATAAA
304576 TATTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
AATAATTAAATATATAAA
Found at i:314260 original size:13 final size:13
Alignment explanation
Indices: 314242--314268 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
314232 ATATGAATAC
314242 AAGTAATAGTAAA
1 AAGTAATAGTAAA
314255 AAGTAATAGTAAA
1 AAGTAATAGTAAA
314268 A
1 A
314269 TAAAGTGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.15, T:0.22
Consensus pattern (13 bp):
AAGTAATAGTAAA
Found at i:314896 original size:17 final size:18
Alignment explanation
Indices: 314874--314908 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
314864 ATCCATATTC
314874 AATAA-TAAATATATAAA
1 AATAATTAAATATATAAA
*
314891 AATAATTAAATTTATAAA
1 AATAATTAAATATATAAA
314909 TATTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
AATAATTAAATATATAAA
Found at i:315267 original size:50 final size:50
Alignment explanation
Indices: 315201--315345 Score: 166
Period size: 53 Copynumber: 2.8 Consensus size: 50
315191 ATACTAATAT
*
315201 CACCCATCTCTTTCCCTCCACCCTTAAAAAATATTTTTTTATACTGGTGC
1 CACCCATCTCTCTCCCTCCACCCTTAAAAAATATTTTTTTATACTGGTGC
** * * * *
315251 TGCCCATCTCTCTCCCTCGACCATCAAAAAATAATTTTTTGTTATACTGGTTC
1 CACCCATCTCTCTCCCTCCACCCTTAAAAAAT-A-TTTTT-TTATACTGGTGC
*
315304 CACCCATCTCTC-CCTCTCCACCCTTAAAAACATTTTTTTTTA
1 CACCCATCTCTCTCC-CTCCACCCTTAAAAA-ATATTTTTTTA
315346 AAAAAACACA
Statistics
Matches: 77, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
50 26 0.34
51 4 0.05
52 12 0.16
53 33 0.43
54 2 0.03
ACGTcount: A:0.24, C:0.32, G:0.06, T:0.38
Consensus pattern (50 bp):
CACCCATCTCTCTCCCTCCACCCTTAAAAAATATTTTTTTATACTGGTGC
Found at i:316569 original size:11 final size:11
Alignment explanation
Indices: 316547--316582 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
316537 AACTAATCCT
316547 CTCTCAAATTTC
1 CTCTC-AATTTC
316559 CTCTCAATTTC
1 CTCTCAATTTC
316570 CTCTCAATTTC
1 CTCTCAATTTC
316581 CT
1 CT
316583 TCCAAAATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 19 0.79
12 5 0.21
ACGTcount: A:0.19, C:0.36, G:0.00, T:0.44
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:316685 original size:10 final size:10
Alignment explanation
Indices: 316655--316693 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
316645 CATAACTCCC
316655 TTTTTTTAAA
1 TTTTTTTAAA
**
316665 TAATTTT-AA
1 TTTTTTTAAA
316674 TTTTTTTAAA
1 TTTTTTTAAA
316684 TTTTTTTAAA
1 TTTTTTTAAA
316694 CTGTAAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
9 7 0.29
10 17 0.71
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTTTTAAA
Found at i:317788 original size:7 final size:7
Alignment explanation
Indices: 317776--317800 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
317766 TTTCTCATGT
317776 TATTTAG
1 TATTTAG
317783 TATTTAG
1 TATTTAG
317790 TATTTAG
1 TATTTAG
317797 TATT
1 TATT
317801 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:318715 original size:21 final size:21
Alignment explanation
Indices: 318673--318717 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
318663 AAATGCCGTA
* *
318673 CCGGAAGAACTAGAATCCCCG
1 CCGGAAGAACAACAATCCCCG
318694 CCGGAAGAACAACAA-CCACCG
1 CCGGAAGAACAACAATCC-CCG
318715 CCG
1 CCG
318718 AAAGCTAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.36, C:0.38, G:0.22, T:0.04
Consensus pattern (21 bp):
CCGGAAGAACAACAATCCCCG
Found at i:318936 original size:21 final size:21
Alignment explanation
Indices: 318906--318986 Score: 87
Period size: 21 Copynumber: 3.9 Consensus size: 21
318896 CTAAACTATT
318906 TTAA-TTAAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCC
* *
318926 TTAACTTAAAAACCCGAA-AC
1 TTAACTTAAAAACCCTAACCC
*
318946 -TAATTTAATTAAAACCCTAACCC
1 TTAACTT-A--AAAACCCTAACCC
318969 TTAACTTAAAAACCCTAA
1 TTAACTTAAAAACCCTAA
318987 ACTAATTTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
19 5 0.10
20 6 0.12
21 22 0.45
22 9 0.18
23 2 0.04
24 5 0.10
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.26
Consensus pattern (21 bp):
TTAACTTAAAAACCCTAACCC
Found at i:319017 original size:15 final size:14
Alignment explanation
Indices: 319000--319359 Score: 90
Period size: 14 Copynumber: 28.9 Consensus size: 14
318990 AATTTAATTA
319000 AAAACCCTTAACTT
1 AAAACCCTTAACTT
*
319014 AAAACCCTAAAC-T
1 AAAACCCTTAACTT
*
319027 --AA--TTTAA-TT
1 AAAACCCTTAACTT
319036 AAAAACCCTTAACTT
1 -AAAACCCTTAACTT
*
319051 AAAACCCTAAAC-T
1 AAAACCCTTAACTT
*
319064 --AA--TTTAA-TT
1 AAAACCCTTAACTT
319073 AAAAACCCTTAACTT
1 -AAAACCCTTAACTT
*
319088 AAAACCCTAAAC-T
1 AAAACCCTTAACTT
*
319101 --AA--TTTAA-TT
1 AAAACCCTTAACTT
319110 AAAAACCCTTAACTT
1 -AAAACCCTTAACTT
*
319125 AAAACCCTAAAC-T
1 AAAACCCTTAACTT
*
319138 --AA--TTTAA-TT
1 AAAACCCTTAACTT
319147 AAAAACCCTTAACTT
1 -AAAACCCTTAACTT
*
319162 AAAACCCTAAAC-T
1 AAAACCCTTAACTT
*
319175 --AA--TTTAA-TT
1 AAAACCCTTAACTT
319184 AAAAACCCTTAACTT
1 -AAAACCCTTAACTT
*
319199 AAAACCCTAAAC-T
1 AAAACCCTTAACTT
*
319212 --AA--TTTAA-TT
1 AAAACCCTTAACTT
319221 AAAAACCCTTAACTT
1 -AAAACCCTTAACTT
*
319236 AAAACCCTAAAC-T
1 AAAACCCTTAACTT
*
319249 --AA--TTTAA-TT
1 AAAACCCTTAACTT
319258 AAAAACCCTTAACTT
1 -AAAACCCTTAACTT
*
319273 AAAACCCTAAAC-T
1 AAAACCCTTAACTT
*
319286 --AA--TTTAA-TT
1 AAAACCCTTAACTT
319295 AAAAACCCTTAACTT
1 -AAAACCCTTAACTT
*
319310 AAAACCCTAAAC-T
1 AAAACCCTTAACTT
*
319323 --AA--TTTAA-TT
1 AAAACCCTTAACTT
319332 AAAAACCCTTAACTT
1 -AAAACCCTTAACTT
*
319347 AAAACCCTAAACT
1 AAAACCCTTAACT
319360 AATTTAATTA
Statistics
Matches: 246, Mismatches: 37, Indels: 126
0.60 0.09 0.31
Matches are distributed among these distances:
9 36 0.15
11 18 0.07
12 18 0.07
13 9 0.04
14 147 0.60
15 18 0.07
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAACCCTTAACTT
Found at i:319027 original size:37 final size:37
Alignment explanation
Indices: 318885--319422 Score: 851
Period size: 37 Copynumber: 13.9 Consensus size: 37
318875 TTGAGTTATT
*
318885 ACTTAAAAACCCTAAACTATTTTAATTAAAAACCCTAACCCTTA
1 ACTT-AAAACCCTAAACTAATTTAATT--AAA----AACCCTTA
*
318929 ACTTAAAAACCCGAAACTAATTTAATTAAAACCCTAACCCTTA
1 ACTT-AAAACCCTAAACTAATTTAATT-AAA----AACCCTTA
318972 ACTTAAAAACCCTAAACTAATTTAATTAAAAACCCTTA
1 ACTT-AAAACCCTAAACTAATTTAATTAAAAACCCTTA
319010 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
1 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
319047 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
1 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
319084 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
1 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
319121 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
1 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
319158 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
1 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
319195 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
1 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
319232 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
1 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
319269 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
1 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
319306 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
1 ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
*
319343 ACTTAAAACCCTAAACTAATTTAATTAATAACCCTAAACCATTA
1 ACTTAAAACCCTAAACTAATTTAA-T--TAA----AAACCCTTA
319387 ACTTAAAAACCCTAAACTAATTTAATTAAAAACCCT
1 ACTT-AAAACCCTAAACTAATTTAATTAAAAACCCT
319423 AAACCCTTAA
Statistics
Matches: 481, Mismatches: 5, Indels: 22
0.95 0.01 0.04
Matches are distributed among these distances:
37 353 0.73
38 19 0.04
40 3 0.01
42 6 0.01
43 42 0.09
44 38 0.08
45 20 0.04
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.29
Consensus pattern (37 bp):
ACTTAAAACCCTAAACTAATTTAATTAAAAACCCTTA
Found at i:319407 original size:45 final size:45
Alignment explanation
Indices: 319334--319446 Score: 201
Period size: 45 Copynumber: 2.5 Consensus size: 45
319324 ATTTAATTAA
*
319334 AAACCCTTAACTT-AAAACCCTAAACTAATTTAATTAATAACCCT
1 AAACCCTTAACTTAAAAACCCTAAACTAATTTAATTAAAAACCCT
*
319378 AAACCATTAACTTAAAAACCCTAAACTAATTTAATTAAAAACCCT
1 AAACCCTTAACTTAAAAACCCTAAACTAATTTAATTAAAAACCCT
319423 AAACCCTTAACTTAAAAACCCTAA
1 AAACCCTTAACTTAAAAACCCTAA
319447 CCCTCAACTT
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
44 12 0.18
45 53 0.82
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.27
Consensus pattern (45 bp):
AAACCCTTAACTTAAAAACCCTAAACTAATTTAATTAAAAACCCT
Found at i:319439 original size:21 final size:21
Alignment explanation
Indices: 319334--319543 Score: 144
Period size: 21 Copynumber: 9.8 Consensus size: 21
319324 ATTTAATTAA
319334 AAACCCTTAACTTAAAACCCT
1 AAACCCTTAACTTAAAACCCT
**
319355 AAACTAATTTAA-TTAATAACCCT
1 AAAC--CCTTAACTTAA-AACCCT
*
319378 AAACCATTAACTTAAAAACCCT
1 AAACCCTTAACTT-AAAACCCT
**
319400 AAACTAATTTAA-TTAAAAACCCT
1 AAAC--CCTTAACTT-AAAACCCT
319423 AAACCCTTAACTTAAAAACCCT
1 AAACCCTTAACTT-AAAACCCT
* *
319445 -AACCCTCAACTTAAAAACCT
1 AAACCCTTAACTTAAAACCCT
* * *
319465 TAACCCTTAAGTTAAAAACCT
1 AAACCCTTAACTTAAAACCCT
* **
319486 TAACCCTTAACTTTAAAACTTT
1 AAACCCTTAAC-TTAAAACCCT
* *
319508 AAA--CTAAAACTTAAAAACCGT
1 AAACCCT-TAACTT-AAAACCCT
319529 -AACCCTTAACTTAAA
1 AAACCCTTAACTTAAA
319544 TATAATTTGA
Statistics
Matches: 154, Mismatches: 21, Indels: 29
0.75 0.10 0.14
Matches are distributed among these distances:
20 16 0.10
21 65 0.42
22 38 0.25
23 31 0.20
24 4 0.03
ACGTcount: A:0.47, C:0.25, G:0.01, T:0.27
Consensus pattern (21 bp):
AAACCCTTAACTTAAAACCCT
Found at i:319483 original size:42 final size:42
Alignment explanation
Indices: 319335--319543 Score: 165
Period size: 42 Copynumber: 4.9 Consensus size: 42
319325 TTTAATTAAA
** * *
319335 AACCCTTAACTT-AAAACCCTAAACTAATTTAA-TTAATAACCCTA
1 AACCCTTAACTTAAAAACCCT-AAC--CCTTAACTTAA-AAACCTT
* ** *
319379 AACCATTAACTTAAAAACCCTAAACTAATTTAA-TTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCT-AAC--CCTTAACTTAAAAA-CCTT
*
319424 AACCCTTAACTTAAAAACCCTAACCCTCAACTTAAAAACCTT
1 AACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCTT
* * * *
319466 AACCCTTAAGTTAAAAACCTTAACCCTTAACTTTAAAACTTT
1 AACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCTT
* * *
319508 AA-ACTAAAACTTAAAAACCGTAACCCTTAACTTAAA
1 AACCCT-TAACTTAAAAACCCTAACCCTTAACTTAAA
319544 TATAATTTGA
Statistics
Matches: 144, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
41 2 0.01
42 71 0.49
43 7 0.05
44 16 0.11
45 48 0.33
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.27
Consensus pattern (42 bp):
AACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCTT
Found at i:319498 original size:63 final size:63
Alignment explanation
Indices: 319408--319543 Score: 168
Period size: 63 Copynumber: 2.1 Consensus size: 63
319398 CTAAACTAAT
* * *
319408 TTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCT-CAACTTAAAAACCTTAACCC
1 TTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAA-ACTAAAACTTAAAAACCGTAACCC
* * **
319471 TTAAGTTAAAAA-CCTTAACCCTTAACTTTAAAACTTTAAACTAAAACTTAAAAACCGTAACCC
1 TTAA-TTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACTAAAACTTAAAAACCGTAACCC
319534 TTAACTTAAA
1 TTAA-TTAAA
319544 TATAATTTGA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
62 2 0.03
63 54 0.86
64 7 0.11
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.27
Consensus pattern (63 bp):
TTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACTAAAACTTAAAAACCGTAACCC
Found at i:319726 original size:104 final size:107
Alignment explanation
Indices: 319543--319849 Score: 426
Period size: 104 Copynumber: 2.8 Consensus size: 107
319533 CTTAACTTAA
*
319543 ATATAATTTGATAAATTTACTAACCATTAATACAATTTTTTGAGTTAATAATTTTACATTCACAT
1 ATATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAGTTAATAATTTTACATTCACAT
**
319608 AATGTTAGATTTGGAAAAATGTTTTTTCCTGGTACTAAC-A-
66 AATGTTAGATTTGGAAAAATGTTTTTAACTGGTACTAACAAT
319648 AT-TAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAGTTAATAATTTTACATTCACAT
1 ATATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAGTTAATAATTTTACATTCACAT
319712 AATGTTAGATTTGGAAAAATG-TTTTAACTGGTACTAACAATTAATAATTTT
66 AATGTTAGATTTGGAAAAATGTTTTTAACTGGTACTAAC-------AA---T
* * *
319763 ATATAATTTGATAATTTTACTAACCATTAATACAA-TTTATCAATTAATAATTTTACATTCACAT
1 ATATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAGTTAATAATTTTACATTCACAT
*
319827 AATGTTAGAGTTGGAAAAATGTT
66 AATGTTAGATTTGGAAAAATGTT
319850 GTTCAACTAT
Statistics
Matches: 181, Mismatches: 7, Indels: 17
0.88 0.03 0.08
Matches are distributed among these distances:
103 15 0.08
104 82 0.45
105 2 0.01
111 1 0.01
115 48 0.27
116 33 0.18
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (107 bp):
ATATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAGTTAATAATTTTACATTCACAT
AATGTTAGATTTGGAAAAATGTTTTTAACTGGTACTAACAAT
Found at i:319770 original size:17 final size:16
Alignment explanation
Indices: 319750--319817 Score: 55
Period size: 18 Copynumber: 3.9 Consensus size: 16
319740 TGGTACTAAC
319750 AATTAATAATTTTATA
1 AATTAATAATTTTATA
*
319766 TAATTTGATAATTTTACTA
1 -AA-TTAATAATTTTA-TA
* *
319785 ACCATTAATACAATTTATC
1 A--ATTAATA-ATTTTATA
319804 AATTAATAATTTTA
1 AATTAATAATTTTA
319818 CATTCACATA
Statistics
Matches: 41, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
16 5 0.12
17 9 0.22
18 12 0.29
19 9 0.22
20 6 0.15
ACGTcount: A:0.44, C:0.07, G:0.01, T:0.47
Consensus pattern (16 bp):
AATTAATAATTTTATA
Found at i:322985 original size:124 final size:124
Alignment explanation
Indices: 322823--323074 Score: 416
Period size: 124 Copynumber: 2.0 Consensus size: 124
322813 CCCAAACATG
* * * *
322823 CTACTGTAGTAAAAGCTCGTCCACGAGGGCGCGCTTTCACAAATTCTTTTCAATTAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAATTAGCATCCTGC
*
322888 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA-AAAAATTTATTTCTTCCATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACAAAAA-TTATTTCTTCCAAGAC
322947 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAATTAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAATTAGCATCCTGC
**
323012 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAAGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAC-AAAAATTATTTCTTCCAAGAC
323072 CTA
1 CTA
323075 AAAACCCTAA
Statistics
Matches: 119, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
124 98 0.82
125 18 0.15
126 3 0.03
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAATTAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACAAAAATTATTTCTTCCAAGAC
Found at i:326768 original size:12 final size:12
Alignment explanation
Indices: 326751--326775 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
326741 GATGAAGCTA
326751 CTACAGTTTGTG
1 CTACAGTTTGTG
326763 CTACAGTTTGTG
1 CTACAGTTTGTG
326775 C
1 C
326776 AGTCTGAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.40
Consensus pattern (12 bp):
CTACAGTTTGTG
Found at i:336921 original size:34 final size:36
Alignment explanation
Indices: 336855--336944 Score: 123
Period size: 34 Copynumber: 2.6 Consensus size: 36
336845 TATGAGATTT
**
336855 GGTGTTATATATATAATA-ATATATATGTGTGCATG
1 GGTGTTATATATATAATATATATATATACGTGCATG
336890 GGTGTTATATATATAATATATAT-TA-ACGTGCATG
1 GGTGTTATATATATAATATATATATATACGTGCATG
* *
336924 GGTGTTATATGTATAAAATAT
1 GGTGTTATATATATAATATAT
336945 TTGCGTGGGT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
34 26 0.52
35 20 0.40
36 4 0.08
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.42
Consensus pattern (36 bp):
GGTGTTATATATATAATATATATATATACGTGCATG
Found at i:341277 original size:25 final size:25
Alignment explanation
Indices: 341249--341345 Score: 70
Period size: 25 Copynumber: 3.9 Consensus size: 25
341239 AGACTCTCTC
*
341249 GAGCCATATAATAGGAAGCTCATAT
1 GAGCCATATAACAGGAAGCTCATAT
** * * * *
341274 GAGCTGTATAACGGGAAGTTTATCT
1 GAGCCATATAACAGGAAGCTCATAT
* * *
341299 GGGCCATATAACATGAAGCTCATAA
1 GAGCCATATAACAGGAAGCTCATAT
* * *
341324 AAGCCATA-ATCAGAAAGCTCAT
1 GAGCCATATAACAGGAAGCTCAT
341346 GCGAGCCTAT
Statistics
Matches: 51, Mismatches: 21, Indels: 1
0.70 0.29 0.01
Matches are distributed among these distances:
24 11 0.22
25 40 0.78
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.24
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTCATAT
Found at i:341585 original size:24 final size:23
Alignment explanation
Indices: 341556--341621 Score: 69
Period size: 25 Copynumber: 2.7 Consensus size: 23
341546 TGGGATACTC
341556 CGAAGAGCTATTAACGGGAAGCT
1 CGAAGAGCTATTAACGGGAAGCT
* * *
341579 CGCAAGAACCATATAACAGGAAGCT
1 CG-AAGAGCTAT-TAACGGGAAGCT
*
341604 CGAGAGAGCTAATAACGG
1 CGA-AGAGCTATTAACGG
341622 ACGCTCTTTC
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
23 2 0.06
24 13 0.39
25 18 0.55
ACGTcount: A:0.39, C:0.20, G:0.27, T:0.14
Consensus pattern (23 bp):
CGAAGAGCTATTAACGGGAAGCT
Found at i:341973 original size:10 final size:11
Alignment explanation
Indices: 341954--341983 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
341944 AATTTAATAA
341954 AATTCACATTC
1 AATTCACATTC
341965 AATTC-CATTC
1 AATTCACATTC
341975 AATTCACAT
1 AATTCACAT
341984 CTTAGGCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (11 bp):
AATTCACATTC
Found at i:350586 original size:35 final size:35
Alignment explanation
Indices: 350539--350811 Score: 199
Period size: 35 Copynumber: 7.4 Consensus size: 35
350529 TAATCAGTAA
*
350539 GCCCAGCTCTAGTTGGATAAACCAACGATATTTGC
1 GCCCAGCGCTAGTTGGATAAACCAACGATATTTGC
* * *
350574 GCCCAACGCTAGTTAGATAAACCAACGATATAAATAGTGA
1 GCCCAGCGCTAGTTGGATAAACCAACGATAT---T--TGC
*
350614 GCCCAGCTCTAGTTGGATAAACCAACGATATTTGC
1 GCCCAGCGCTAGTTGGATAAACCAACGATATTTGC
* * *
350649 GCCCAGCGCTAGTCGGATAAACCGACGATATAAATAGTGA
1 GCCCAGCGCTAGTTGGATAAACCAACGATAT---T--TGC
** *
350689 GCCCAGCTTTAGTTGGATAAACCAACAATATTTGC
1 GCCCAGCGCTAGTTGGATAAACCAACGATATTTGC
* * * * * *
350724 ACCCAGTGCTAGTCAGG-TATACCGACGATTATAATTGTGA
1 GCCCAGCGCTAGT-TGGATAAACCAACG---AT-ATT-TGC
* * *
350764 GCCCAGCTCTAGTTGGATGAACCAACGATGA-TTGA
1 GCCCAGCGCTAGTTGGATAAACCAACGAT-ATTTGC
350799 GCCCAGCGCTAGT
1 GCCCAGCGCTAGT
350812 CGAATGAACC
Statistics
Matches: 185, Mismatches: 36, Indels: 34
0.73 0.14 0.13
Matches are distributed among these distances:
35 91 0.49
36 3 0.02
37 5 0.03
38 4 0.02
39 5 0.03
40 77 0.42
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (35 bp):
GCCCAGCGCTAGTTGGATAAACCAACGATATTTGC
Found at i:350632 original size:75 final size:75
Alignment explanation
Indices: 350496--350829 Score: 417
Period size: 75 Copynumber: 4.5 Consensus size: 75
350486 CTGACGGAAG
* * * * *
350496 TTGCGCTCAGCGCTAGTCGGATATACCGATGA-AT-AATCAGTAAGCCCAGCTCTAGTTGGATAA
1 TTGCGCCCAGCGCTAGTCAGATAAACCGACGATATAAAT-AGTGAGCCCAGCTCTAGTTGGATAA
350559 ACCAACGATAT
65 ACCAACGATAT
* * *
350570 TTGCGCCCAACGCTAGTTAGATAAACCAACGATATAAATAGTGAGCCCAGCTCTAGTTGGATAAA
1 TTGCGCCCAGCGCTAGTCAGATAAACCGACGATATAAATAGTGAGCCCAGCTCTAGTTGGATAAA
350635 CCAACGATAT
66 CCAACGATAT
* *
350645 TTGCGCCCAGCGCTAGTCGGATAAACCGACGATATAAATAGTGAGCCCAGCTTTAGTTGGATAAA
1 TTGCGCCCAGCGCTAGTCAGATAAACCGACGATATAAATAGTGAGCCCAGCTCTAGTTGGATAAA
*
350710 CCAACAATAT
66 CCAACGATAT
* * * * * *
350720 TTGCACCCAGTGCTAGTCAGGTATACCGACGAT-TATAATTGTGAGCCCAGCTCTAGTTGGATGA
1 TTGCGCCCAGCGCTAGTCAGATAAACCGACGATATA-AATAGTGAGCCCAGCTCTAGTTGGATAA
350784 ACCAACGATGA-
65 ACCAACGAT-AT
* * *
350795 TTGAGCCCAGCGCTAGTC-GAATGAACCGACAATAT
1 TTGCGCCCAGCGCTAGTCAG-ATAAACCGACGATAT
350830 CAATTACTCA
Statistics
Matches: 224, Mismatches: 30, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
74 28 0.12
75 191 0.85
76 5 0.02
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (75 bp):
TTGCGCCCAGCGCTAGTCAGATAAACCGACGATATAAATAGTGAGCCCAGCTCTAGTTGGATAAA
CCAACGATAT
Found at i:350896 original size:20 final size:21
Alignment explanation
Indices: 350856--350904 Score: 82
Period size: 20 Copynumber: 2.4 Consensus size: 21
350846 AGTCCATAAA
350856 ATCACATTTCATAATCTCAAT
1 ATCACATTTCATAATCTCAAT
*
350877 ATCGCATTTCATAA-CTCAAT
1 ATCACATTTCATAATCTCAAT
350897 ATCACATT
1 ATCACATT
350905 CGCTTCAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.37, C:0.24, G:0.02, T:0.37
Consensus pattern (21 bp):
ATCACATTTCATAATCTCAAT
Found at i:350913 original size:37 final size:36
Alignment explanation
Indices: 350872--350963 Score: 96
Period size: 37 Copynumber: 2.5 Consensus size: 36
350862 TTTCATAATC
* *
350872 TCAATATCGCATTTCAT-AACTCAATATCACATTCGCT
1 TCAATATC-CA-TTAATCAACTCAATATCACATTCACT
* *
350909 TCAATTATCTATTAATCAACTCAATATCATATTCACT
1 TCAA-TATCCATTAATCAACTCAATATCACATTCACT
*
350946 TCAATTATCTATTAATCA
1 TCAA-TATCCATTAATCA
350964 TTCATTAATT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
36 4 0.08
37 41 0.84
38 4 0.08
ACGTcount: A:0.36, C:0.23, G:0.02, T:0.39
Consensus pattern (36 bp):
TCAATATCCATTAATCAACTCAATATCACATTCACT
Found at i:366506 original size:24 final size:24
Alignment explanation
Indices: 366474--366521 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
366464 TTTTATACTT
366474 TACTATGACTTTATTGAGGGAAAA
1 TACTATGACTTTATTGAGGGAAAA
366498 TACTATGACTTTATTGAGGGAAAA
1 TACTATGACTTTATTGAGGGAAAA
366522 GAATCATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (24 bp):
TACTATGACTTTATTGAGGGAAAA
Found at i:370418 original size:19 final size:19
Alignment explanation
Indices: 370388--370459 Score: 74
Period size: 20 Copynumber: 3.7 Consensus size: 19
370378 AAAAAATATA
370388 AATTTGGAATTTTTATAAA-T
1 AATTT-GAATTTTTA-AAATT
*
370408 AATTTGAATTTTAAAAATT
1 AATTTGAATTTTTAAAATT
* *
370427 ATTTTGATTTTTTGAAAATT
1 AATTTGAATTTTT-AAAATT
*
370447 ATTTTGAATTTTT
1 AATTTGAATTTTT
370460 TTTGTAATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
18 3 0.07
19 19 0.42
20 23 0.51
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (19 bp):
AATTTGAATTTTTAAAATT
Found at i:377846 original size:28 final size:27
Alignment explanation
Indices: 377815--378005 Score: 163
Period size: 28 Copynumber: 6.9 Consensus size: 27
377805 TCTTCACAAC
377815 GATAGTCCTTGTGGACTTCCCACATTTA
1 GATAGT-CTTGTGGACTTCCCACATTTA
*
377843 GATAGTCTTATGGACTTCCCACATTTA
1 GATAGTCTTGTGGACTTCCCACATTTA
* *** *
377870 GATATTCTTAAAAGACTTCCCACAATTA
1 GATAGTCTT-GTGGACTTCCCACATTTA
* * *
377898 GATATTCCTGGTGGACTTCCCATATTTA
1 GATAGT-CTTGTGGACTTCCCACATTTA
*
377926 GATAGTCTTGCT-GACTTCCCATA-TTA
1 GATAGTCTTG-TGGACTTCCCACATTTA
* * * * *
377952 GATAGTCCTGGGGTACTTCTCAAATTTC
1 GATAGTCTTGTGG-ACTTCCCACATTTA
377980 GATAGTCTTG-GCAGACTTCCCACATT
1 GATAGTCTTGTG--GACTTCCCACATT
378006 AGGTAGTTGG
Statistics
Matches: 134, Mismatches: 21, Indels: 16
0.78 0.12 0.09
Matches are distributed among these distances:
26 13 0.10
27 51 0.38
28 67 0.50
29 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (27 bp):
GATAGTCTTGTGGACTTCCCACATTTA
Found at i:377942 original size:55 final size:56
Alignment explanation
Indices: 377828--378012 Score: 191
Period size: 55 Copynumber: 3.4 Consensus size: 56
377818 AGTCCTTGTG
* ** * * **
377828 GACTTCCCACATTTAGATAGT-CTTATGGACTTCCCACATTTAGATATTCTTAAAA
1 GACTTCCCACAATTAGATAGTCCTGGTGGACTTCCCAAATTTAGATAGTCTTAGCA
* * *
377883 GACTTCCCACAATTAGATATTCCTGGTGGACTTCCCATATTTAGATAGTCTT-GCT
1 GACTTCCCACAATTAGATAGTCCTGGTGGACTTCCCAAATTTAGATAGTCTTAGCA
* * * *
377938 GACTTCCCA-TATTAGATAGTCCTGG-GGTACTTCTCAAATTTCGATAGTCTTGGCA
1 GACTTCCCACAATTAGATAGTCCTGGTGG-ACTTCCCAAATTTAGATAGTCTTAGCA
*
377993 GACTTCCCAC-ATTAGGTAGT
1 GACTTCCCACAATTAGATAGT
378013 TGGCCGCCTC
Statistics
Matches: 110, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
53 2 0.02
54 34 0.31
55 48 0.44
56 26 0.24
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (56 bp):
GACTTCCCACAATTAGATAGTCCTGGTGGACTTCCCAAATTTAGATAGTCTTAGCA
Found at i:380839 original size:27 final size:27
Alignment explanation
Indices: 380801--380852 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
380791 CTCACCTACT
380801 TTGTTGTAAAACTATATTACAACTCGA
1 TTGTTGTAAAACTATATTACAACTCGA
380828 TTGTTGTAAAACTATATTACAACTC
1 TTGTTGTAAAACTATATTACAACTC
380853 AAACCGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (27 bp):
TTGTTGTAAAACTATATTACAACTCGA
Found at i:384924 original size:28 final size:28
Alignment explanation
Indices: 384875--384941 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
384865 CGACAGGTCA
*
384875 ACTTCCCACA-TTAGATAGTCCTGACGG
1 ACTTCCCACATTTAGATAGTCCTGACAG
384902 ACTTCCCACATTTAGATAGTCCTGACAG
1 ACTTCCCACATTTAGATAGTCCTGACAG
*
384930 ACTTCGCACATT
1 ACTTCCCACATT
384942 GTCGGTAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
27 10 0.27
28 27 0.73
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
ACTTCCCACATTTAGATAGTCCTGACAG
Found at i:387320 original size:15 final size:15
Alignment explanation
Indices: 387300--387331 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
387290 AGGTTTAGTA
*
387300 AAATATTTAAAAAAT
1 AAATATATAAAAAAT
387315 AAATATATAAAAAAT
1 AAATATATAAAAAAT
387330 AA
1 AA
387332 TTTTTTAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAATATATAAAAAAT
Found at i:387492 original size:97 final size:97
Alignment explanation
Indices: 387386--387582 Score: 378
Period size: 97 Copynumber: 2.0 Consensus size: 97
387376 AAAATAAAAG
387386 ATAGAGAAT-AAAGAACAAAAAGAATGGGAGAGCAAAGAGAGAGCGTATTTTATTAATCAATCAG
1 ATAGAGAATAAAAGAAC-AAAAGAATGGGAGAGCAAAGAGAGAGCGTATTTTATTAATCAATCAG
387450 AATATTTACAAAGCTTCTCCAAAGTCTCTATTT
65 AATATTTACAAAGCTTCTCCAAAGTCTCTATTT
387483 ATAGAGAATAAAAGAACAAAAGAATGGGAGAGCAAAGAGAGAGCGTATTTTATTAATCAATCAGA
1 ATAGAGAATAAAAGAACAAAAGAATGGGAGAGCAAAGAGAGAGCGTATTTTATTAATCAATCAGA
387548 ATATTTACAAAGCTTCTCCAAAGTCTCTATTT
66 ATATTTACAAAGCTTCTCCAAAGTCTCTATTT
387580 ATA
1 ATA
387583 AACATAAGAA
Statistics
Matches: 99, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
97 92 0.93
98 7 0.07
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.26
Consensus pattern (97 bp):
ATAGAGAATAAAAGAACAAAAGAATGGGAGAGCAAAGAGAGAGCGTATTTTATTAATCAATCAGA
ATATTTACAAAGCTTCTCCAAAGTCTCTATTT
Found at i:395684 original size:26 final size:26
Alignment explanation
Indices: 395655--395734 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 26
395645 TGGAGGAAGT
395655 ATACTGTTACTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
** *
395681 ATACTGTTACTCACAGCTTTGATGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
* * *
395707 ATA-TATTACGGGCAGCTTTGCTACG
1 ATACTGTTACTGGCAGCTTTGCTGCG
395732 ATA
1 ATA
395735 TTGGTGTGTT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
25 19 0.42
26 26 0.58
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.34
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCG
Found at i:395722 original size:25 final size:25
Alignment explanation
Indices: 395661--395735 Score: 87
Period size: 25 Copynumber: 3.0 Consensus size: 25
395651 AAGTATACTG
*
395661 TTACTGGCAGCTTTGCTGCGATACTG
1 TTACTGGCAGCTTTGCTGCGATA-TA
** *
395687 TTACTCACAGCTTTGATGCGATATA
1 TTACTGGCAGCTTTGCTGCGATATA
* *
395712 TTACGGGCAGCTTTGCTACGATAT
1 TTACTGGCAGCTTTGCTGCGATAT
395736 TGGTGTGTTG
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
25 20 0.50
26 20 0.50
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (25 bp):
TTACTGGCAGCTTTGCTGCGATATA
Found at i:395879 original size:28 final size:27
Alignment explanation
Indices: 395837--395901 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 27
395827 ATTGCACTGT
* *
395837 ACTGATATTGTATTGGGCTAAGGCCCAC
1 ACTGATACTGTATTGGACTAAGG-CCAC
*
395865 ATTGATACTGTATTGGACTAAGGCCAC
1 ACTGATACTGTATTGGACTAAGGCCAC
395892 ACTG-TACTGT
1 ACTGATACTGT
395902 TACTGAATAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 6 0.18
27 7 0.21
28 20 0.61
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (27 bp):
ACTGATACTGTATTGGACTAAGGCCAC
Found at i:403412 original size:26 final size:26
Alignment explanation
Indices: 403383--403541 Score: 183
Period size: 26 Copynumber: 6.1 Consensus size: 26
403373 TGGAGGAAGT
* *
403383 ATACTGTTACTGGCAGCTTTACTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
* * *
403409 ATACTGTTACTCGCAGCTTTGCTACG
1 ATACTATTACTGGCAGCTTTGCTGCG
**
403435 ATACTATTACTGGCAGCTTTATTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
* * * *
403461 ATACTGTCACTGACAGCTTTGCTACG
1 ATACTATTACTGGCAGCTTTGCTGCG
*
403487 ATACTATTACTGGCAGCTTTGTTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
* * *
403513 ATATTATTACGGGCAGCGTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
403539 ATA
1 ATA
403542 TTGGTGTGTT
Statistics
Matches: 110, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 110 1.00
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:403515 original size:78 final size:78
Alignment explanation
Indices: 403383--403529 Score: 204
Period size: 78 Copynumber: 1.9 Consensus size: 78
403373 TGGAGGAAGT
* * * * *
403383 ATACTGTTACTGGCAGCTTTACTGCGATACTGTTACTCGCAGCTTTGCTACGATACTATTACTGG
1 ATACTGTCACTGACAGCTTTACTACGATACTATTACTCGCAGCTTTGCTACGATACTATTACGGG
403448 CAGCTTTATTGCG
66 CAGCTTTATTGCG
* * * * *
403461 ATACTGTCACTGACAGCTTTGCTACGATACTATTACTGGCAGCTTTGTTGCGATATTATTACGGG
1 ATACTGTCACTGACAGCTTTACTACGATACTATTACTCGCAGCTTTGCTACGATACTATTACGGG
403526 CAGC
66 CAGC
403530 GTTGCTGCGA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 59 1.00
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (78 bp):
ATACTGTCACTGACAGCTTTACTACGATACTATTACTCGCAGCTTTGCTACGATACTATTACGGG
CAGCTTTATTGCG
Found at i:403535 original size:52 final size:52
Alignment explanation
Indices: 403383--403541 Score: 219
Period size: 52 Copynumber: 3.1 Consensus size: 52
403373 TGGAGGAAGT
* * *
403383 ATACTGTTACTGGCAGCTTTACTGCGATACTGTTACTCGCAGCTTTGCTACG
1 ATACTATTACTGGCAGCTTTATTGCGATACTGTTACTGGCAGCTTTGCTACG
* *
403435 ATACTATTACTGGCAGCTTTATTGCGATACTGTCACTGACAGCTTTGCTACG
1 ATACTATTACTGGCAGCTTTATTGCGATACTGTTACTGGCAGCTTTGCTACG
* * * * * *
403487 ATACTATTACTGGCAGCTTTGTTGCGATATTATTACGGGCAGCGTTGCTGCG
1 ATACTATTACTGGCAGCTTTATTGCGATACTGTTACTGGCAGCTTTGCTACG
403539 ATA
1 ATA
403542 TTGGTGTGTT
Statistics
Matches: 94, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 94 1.00
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (52 bp):
ATACTATTACTGGCAGCTTTATTGCGATACTGTTACTGGCAGCTTTGCTACG
Found at i:403714 original size:27 final size:28
Alignment explanation
Indices: 403644--403706 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
403634 ATTGCACTGT
* * *
403644 ACTGATATTGTATTGGGCTAAGGCCCAC
1 ACTGATACTGTACTGAGCTAAGGCCCAC
*
403672 ATTGATACTGTACTGAGCTAAGG-CCAC
1 ACTGATACTGTACTGAGCTAAGGCCCAC
403699 ACTG-TACT
1 ACTGATACT
403707 ATTACTGAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 4 0.13
27 7 0.23
28 19 0.63
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (28 bp):
ACTGATACTGTACTGAGCTAAGGCCCAC
Found at i:411150 original size:64 final size:64
Alignment explanation
Indices: 411049--411239 Score: 382
Period size: 64 Copynumber: 3.0 Consensus size: 64
411039 CAAGGACTGG
411049 CATGAGAAATCACCATTTGCCCTCCTTGCTTGCCGAACATCTATCAAGATTTCTATCAGAGCAT
1 CATGAGAAATCACCATTTGCCCTCCTTGCTTGCCGAACATCTATCAAGATTTCTATCAGAGCAT
411113 CATGAGAAATCACCATTTGCCCTCCTTGCTTGCCGAACATCTATCAAGATTTCTATCAGAGCAT
1 CATGAGAAATCACCATTTGCCCTCCTTGCTTGCCGAACATCTATCAAGATTTCTATCAGAGCAT
411177 CATGAGAAATCACCATTTGCCCTCCTTGCTTGCCGAACATCTATCAAGATTTCTATCAGAGCA
1 CATGAGAAATCACCATTTGCCCTCCTTGCTTGCCGAACATCTATCAAGATTTCTATCAGAGCA
411240 ACGTTGTTCT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 127 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.29
Consensus pattern (64 bp):
CATGAGAAATCACCATTTGCCCTCCTTGCTTGCCGAACATCTATCAAGATTTCTATCAGAGCAT
Found at i:411687 original size:6 final size:7
Alignment explanation
Indices: 411670--411728 Score: 57
Period size: 7 Copynumber: 8.0 Consensus size: 7
411660 TTGAATCAAA
411670 AAAAATG
1 AAAAATG
411677 AAAAATG
1 AAAAATG
**
411684 AAAAAAC
1 AAAAATG
411691 AAAAATG
1 AAAAATG
411698 AAAAAATG
1 -AAAAATG
411706 AAAAAAATG
1 --AAAAATG
411715 AAAAA-G
1 AAAAATG
411721 TAAAAATG
1 -AAAAATG
411729 GAGAGGCTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
6 1 0.02
7 27 0.61
8 8 0.18
9 8 0.18
ACGTcount: A:0.75, C:0.02, G:0.12, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:411687 original size:14 final size:15
Alignment explanation
Indices: 411669--411728 Score: 70
Period size: 14 Copynumber: 4.0 Consensus size: 15
411659 TTTGAATCAA
411669 AAAAAATGAAAAATG
1 AAAAAATGAAAAATG
*
411684 AAAAAA-CAAAAATG
1 AAAAAATGAAAAATG
411698 AAAAAATGAAAAAAATG
1 AAAAAATG--AAAAATG
*
411715 AAAAAGT-AAAAATG
1 AAAAAATGAAAAATG
411729 GAGAGGCTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
14 20 0.51
15 6 0.15
17 13 0.33
ACGTcount: A:0.75, C:0.02, G:0.12, T:0.12
Consensus pattern (15 bp):
AAAAAATGAAAAATG
Found at i:411688 original size:8 final size:8
Alignment explanation
Indices: 411669--411719 Score: 63
Period size: 8 Copynumber: 6.6 Consensus size: 8
411659 TTTGAATCAA
411669 AAAAAATG
1 AAAAAATG
411677 -AAAAATG
1 AAAAAATG
411684 AAAAAA--
1 AAAAAATG
*
411690 CAAAAATG
1 AAAAAATG
411698 AAAAAATG
1 AAAAAATG
411706 AAAAAAATG
1 -AAAAAATG
411715 AAAAA
1 AAAAA
411720 GTAAAAATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
6 5 0.14
7 7 0.19
8 17 0.46
9 8 0.22
ACGTcount: A:0.78, C:0.02, G:0.10, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:411694 original size:22 final size:22
Alignment explanation
Indices: 411670--411711 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
411660 TTGAATCAAA
411670 AAAAATG-AAAAATGAAAAAAC
1 AAAAATGAAAAAATGAAAAAAC
411691 AAAAATGAAAAAATGAAAAAA
1 AAAAATGAAAAAATGAAAAAA
411712 ATGAAAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.79, C:0.02, G:0.10, T:0.10
Consensus pattern (22 bp):
AAAAATGAAAAAATGAAAAAAC
Found at i:413096 original size:45 final size:45
Alignment explanation
Indices: 412959--413097 Score: 117
Period size: 45 Copynumber: 3.2 Consensus size: 45
412949 ACAGATCATT
* * *
412959 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
1 GAAGATAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATC
* * * * * * * *
413004 -AA-A-AACAAAGCCTTGCCTCCCT-CGGTTG-CAGTGGAGTAGGTT
1 GAAGATAACAGA-TCTTGCCTTCCTGC-ATTGACAGTGAAGCAGATC
*
413046 AAAGATAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATC
1 GAAGATAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATC
413091 GAAGATA
1 GAAGATA
413098 CAAGTCCTAT
Statistics
Matches: 67, Mismatches: 20, Indels: 14
0.66 0.20 0.14
Matches are distributed among these distances:
42 14 0.21
43 15 0.22
44 16 0.24
45 22 0.33
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.22
Consensus pattern (45 bp):
GAAGATAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATC
Found at i:413326 original size:129 final size:127
Alignment explanation
Indices: 413097--413434 Score: 480
Period size: 129 Copynumber: 2.6 Consensus size: 127
413087 GATCGAAGAT
* *
413097 ACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACCAGATCTTGT-TCCCTAAA
1 ACAAGTCCTATAT-CCTGGTCAGCAGTGGAATAGGTTGGAAATTA-CAGATCTTGTCTCCCTAAG
* * *
413161 CAGTAGCGGAGCAGATCGAATATGGTGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
64 CAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
* * * *
413225 ACAAGTTCTATATCACTGGTCAGCAGTGGAGTAGGATGGGAAACTACAGATCTTGTCTCCCTAAG
1 ACAAGTCCTATATC-CTGGTCAGCAGTGGAATAGG-TTGGAAATTACAGATCTTGTCTCCCTAAG
* * *
413290 CAATAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCTGATTTAAGCC
64 CAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
* ** *
413354 ACAAGTCCTATATCCTTGGCCAATAGTGGAATATGTTGGAAATTACAGATCTTGTCTCCCTAAGC
1 ACAAGTCCTATATCC-TGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
413419 AGTAGCGGAGCAGATC
65 AGTAGCGGAGCAGATC
413435 AAGGACAATG
Statistics
Matches: 185, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
127 1 0.01
128 84 0.45
129 100 0.54
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (127 bp):
ACAAGTCCTATATCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCA
GTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
Found at i:413890 original size:219 final size:218
Alignment explanation
Indices: 413444--413978 Score: 689
Period size: 219 Copynumber: 2.4 Consensus size: 218
413434 CAAGGACAAT
* * * *
413444 GGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCA
1 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACA
** * * *** * * *
413509 GTGGAATAGA-CTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGTAGTGGGGCAGATCGAAGATGG
66 GTGGAATAGACCAAAG-AACCAGATCTTATCCCCCTGAAGCAATAGTGGAGCAGATCAAAAATGG
* * * *
413573 TAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGTAGCCAGTAATCCTATTTCCCTGAGAT
130 TAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGAT
**
413638 TACAGTGGAGTGGATTAAAATAAA
195 TACAGTGGAACGGATTAAAATAAA
* *
413662 GGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCGCATCAGGTTTTATCTCCCTGAGATTACA
1 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACA
*
413727 GTGGAATAGACCAAAGAATTCCAGATCTTATCTCCCT-AAGCAATAGTGGAGCTA-ATCAAAAAT
66 GTGGAATAGACCAAAGAA--CCAGATCTTATCCCCCTGAAGCAATAGTGGAGC-AGATCAAAAAT
* * *
413790 GGTGAATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTGTTTCCCTGAG
128 GGTAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAG
*
413855 ATTACAGTGGAACGGATTAAAATCAA
193 ATTACAGTGGAACGGATTAAAATAAA
* * * * *
413881 GGGTCTTATCTCTCTCAAGATACAGTAGAGTAGATCGCATCAGGTCTTATCTCTCTGAAATTACA
1 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACA
* * * *
413946 GTGGAACAGACCGAAGAAGCAAATCTTATCCCC
66 GTGGAATAGACCAAAGAACCAGATCTTATCCCC
413979 TAGCCGATGC
Statistics
Matches: 274, Mismatches: 39, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
217 12 0.04
218 71 0.26
219 176 0.64
220 15 0.05
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (218 bp):
GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACA
GTGGAATAGACCAAAGAACCAGATCTTATCCCCCTGAAGCAATAGTGGAGCAGATCAAAAATGGT
AAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATT
ACAGTGGAACGGATTAAAATAAA
Found at i:414051 original size:50 final size:50
Alignment explanation
Indices: 413997--414272 Score: 207
Period size: 50 Copynumber: 5.5 Consensus size: 50
413987 GCAGTGGAAC
* * *
413997 AGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * **
414047 AGATTAAAGCTACCACAGCGAATCTTACTTCTCAGGCGA-TGCAGTGGAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGAC-ATTGCAGTTAAAA
* * * *
414097 AGATTAAAGCCATATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * ** *
414147 AGATTAAAGCTACAACAGCGAATCTT-ATTTCTCAAGCGA-TGCAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGA-C-ATTGCAGTTAAAA
* * * ** *
414197 AGGTTAAAGCCACATCGGTAAATCTTGCTTCCCCGACATTGCAGTTCAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * **
414247 AGATTGAAGCTACAATGGCGAATCTT
1 AGATTAAAGCCACAACAGCGAATCTT
414273 ACTTTCCAAA
Statistics
Matches: 165, Mismatches: 55, Indels: 12
0.71 0.24 0.05
Matches are distributed among these distances:
49 7 0.04
50 151 0.92
51 7 0.04
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:414140 original size:100 final size:100
Alignment explanation
Indices: 413983--414276 Score: 453
Period size: 100 Copynumber: 2.9 Consensus size: 100
413973 ATCCCCTAGC
* * * *
413983 CGATGCAGTGGAACAGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAAA
1 CGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAA
* *
414048 GATTAAAGCTACCACAGCGAATCTTACTTCTCAGG
66 GATTAAAGCTACAACAGCGAATCTTACTTCTCAAG
* *
414083 CGATGCAGTGGAAAAGATTAAAGCCATATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAA
1 CGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAA
*
414148 GATTAAAGCTACAACAGCGAATCTTATTTCTCAAG
66 GATTAAAGCTACAACAGCGAATCTTACTTCTCAAG
* * *
414183 CGATGCAGTGGAACAGGTTAAAGCCACATCGGTAAATCTTGCTTCCCCGACATTGCAGTTCAAAA
1 CGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAA
* **
414248 GATTGAAGCTACAATGGCGAATCTTACTT
66 GATTAAAGCTACAACAGCGAATCTTACTT
414277 TCCAAAAGTT
Statistics
Matches: 176, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 176 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (100 bp):
CGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAA
GATTAAAGCTACAACAGCGAATCTTACTTCTCAAG
Found at i:415683 original size:3 final size:3
Alignment explanation
Indices: 415675--415731 Score: 51
Period size: 3 Copynumber: 18.3 Consensus size: 3
415665 AACTTTACTT
* * * * *
415675 TTA TTA TTA TTG CTA TTA TTA TTA TTTA TCA CTA TTTA TTA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA -TTA TTA TTA TTA
415722 TTA TTA TTA T
1 TTA TTA TTA T
415732 ATTTGATTAT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
3 37 0.88
4 5 0.12
ACGTcount: A:0.28, C:0.05, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:419130 original size:17 final size:17
Alignment explanation
Indices: 419096--419137 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
419086 AAAGTAACAT
*
419096 ATAATTATATTTTAAAA
1 ATAATTATATCTTAAAA
419113 ATAATATATATCTTAAAA
1 ATAAT-TATATCTTAAAA
*
419131 TTAATTA
1 ATAATTA
419138 ATATTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
ATAATTATATCTTAAAA
Found at i:443687 original size:21 final size:21
Alignment explanation
Indices: 443661--443702 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
443651 TACCTTGCAT
443661 TTGGTATCAGTGCTTCCTCAC
1 TTGGTATCAGTGCTTCCTCAC
443682 TTGGTATCAGTGCTTCCTCAC
1 TTGGTATCAGTGCTTCCTCAC
443703 GGGACCTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.29, G:0.19, T:0.38
Consensus pattern (21 bp):
TTGGTATCAGTGCTTCCTCAC
Found at i:450964 original size:13 final size:13
Alignment explanation
Indices: 450946--450970 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
450936 TCTGTTCTTC
450946 TTTTGTTTCTTTT
1 TTTTGTTTCTTTT
450959 TTTTGTTTCTTT
1 TTTTGTTTCTTT
450971 AATTTTTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (13 bp):
TTTTGTTTCTTTT
Found at i:451431 original size:3 final size:3
Alignment explanation
Indices: 451418--451457 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
451408 AACTTATTTC
451418 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATTA AT- ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA AT
451458 TTATTATTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.12
3 27 0.79
4 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:460178 original size:43 final size:43
Alignment explanation
Indices: 460057--460284 Score: 262
Period size: 43 Copynumber: 5.3 Consensus size: 43
460047 GTGTCGCTAA
* *
460057 CTTTAGCGGCGCTTATCCCACAAACGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTCCCAGAAACGCCGCTAAAGACCAGGAC
* **
460100 CTTTAGCGGCGC-TTTCCCAGAAACGCTGCTAAAGACTTGGAC
1 CTTTAGCGGCGCTTTTCCCAGAAACGCCGCTAAAGACCAGGAC
* **
460142 CTTTAGCGGCGCTTTTCGCAGAAACGCCGCTAAAGACCAATAC
1 CTTTAGCGGCGCTTTTCCCAGAAACGCCGCTAAAGACCAGGAC
* * *
460185 CTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAGAACAAGAC
1 CTTTAGCGGCGCTTTTCCCAGAAACGCCGCTAAAGACCAGGAC
* * * * * * * *
460228 TTTTAGCGACGCTTTTTCTACAAACGTCACTAAAG-CTCATGAC
1 CTTTAGCGGCGCTTTTCCCAGAAACGCCGCTAAAGAC-CAGGAC
460271 CTTTAGCGGCGCTT
1 CTTTAGCGGCGCTT
460285 CTACTAAAAC
Statistics
Matches: 157, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
42 37 0.24
43 120 0.76
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCAGAAACGCCGCTAAAGACCAGGAC
Found at i:460178 original size:85 final size:86
Alignment explanation
Indices: 460028--460284 Score: 268
Period size: 86 Copynumber: 2.9 Consensus size: 86
460018 AAGCGCCGGA
*
460028 AAAAACGCCGCTAAAGACTGTGTCGCTAACTTTAGCGGCGCTTATCCCACAAACGCCGCTAAAGA
1 AAAAACGCCGCTAAAGACT-TG--G--ACCTTTAGCGGCGCTTATCCCACAAACGCCGCTAAAGA
*
460093 CCAGGACCTTTAGCGGCGC-TTTCCC
61 CCAAGACCTTTAGCGGCGCTTTTCCC
* * * * * *
460118 AGAAACGCTGCTAAAGACTTGGACCTTTAGCGGCGCTTTTCGCAGAAACGCCGCTAAAGACCAAT
1 AAAAACGCCGCTAAAGACTTGGACCTTTAGCGGCGCTTATCCCACAAACGCCGCTAAAGACCAAG
460183 ACCTTTAGCGGCGCTTTTCCC
66 ACCTTTAGCGGCGCTTTTCCC
** * * * * * * *
460204 AAAAACGCCGCTAAAGAAC-AAGACTTTTAGCGACGCTTTTTCTACAAACGTCACTAAAG-CTCA
1 AAAAACGCCGCTAAAG-ACTTGGACCTTTAGCGGCGCTTATCCCACAAACGCCGCTAAAGAC-CA
*
460267 TGACCTTTAGCGGCGCTT
64 AGACCTTTAGCGGCGCTT
460285 CTACTAAAAC
Statistics
Matches: 142, Mismatches: 22, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
85 52 0.37
86 68 0.48
87 3 0.02
89 2 0.01
90 17 0.12
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (86 bp):
AAAAACGCCGCTAAAGACTTGGACCTTTAGCGGCGCTTATCCCACAAACGCCGCTAAAGACCAAG
ACCTTTAGCGGCGCTTTTCCC
Done.