Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3620

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 425

Length: 709
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28


Found at i:218 original size:17 final size:17

Alignment explanation


    Indices: 196--234  Score: 60
    Period size: 17  Copynumber: 2.3  Consensus size: 17

        186 CTAGCCCGGT

                           * 
        196 GCCGCCACCATTCTGTC
          1 GCCGCCACCATTCTGAC

                     *       
        213 GCCGCCACCGTTCTGAC
          1 GCCGCCACCATTCTGAC

                 
        230 GCCGC
          1 GCCGC

        235 GCCGCACGTC


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.10, C:0.49, G:0.23, T:0.18


Consensus pattern (17 bp):   
GCCGCCACCATTCTGAC
Done.