Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold558
Parameters: 2 7 7 80 10 50 1000
Length:  55658

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
890--952
27
2.4
27
84
7
76
36
23
20
19
1.95
904--992
27
3.2
28
80
6
92
34
19
24
21
1.96
1841--1890
23
2.2
23
100
0
100
30
24
16
30
1.96
2314--2621
49
6.3
49
99
0
598
46
9
2
41
1.50
3041--3082
18
2.3
18
87
0
57
45
7
28
19
1.76
4826--4879
22
2.5
22
85
8
76
44
1
29
24
1.64
13090--13131
18
2.3
18
95
0
75
45
21
14
19
1.85
16616--16697
25
3.3
25
83
6
96
39
14
14
31
1.87
16740--16871
70
1.9
70
100
0
264
34
16
17
31
1.92
25547--25598
23
2.2
24
77
16
56
15
7
7
69
1.35
28757--29164
114
3.6
114
82
3
455
30
18
25
25
1.98
29705--29737
14
2.3
15
94
5
59
30
0
33
36
1.58
29913--30211
42
7.1
42
94
0
517
23
20
23
33
1.97
29913--30267
126
2.9
125
90
5
536
23
20
23
33
1.97
30185--30240
29
1.9
29
96
0
103
16
17
21
44
1.86
33894--33937
15
2.8
16
82
10
54
38
4
0
56
1.20
34068--34123
12
4.5
12
72
16
51
55
10
0
33
1.35
41520--41808
42
6.8
42
87
2
364
34
18
23
22
1.96
41520--41850
84
3.9
84
84
2
270
32
19
23
24
1.97
44205--44247
22
2.0
22
81
9
52
9
11
11
67
1.42
48871--48904
9
3.7
9
88
7
50
11
2
5
79
1.02
53816--53842
2
13.5
2
100
0
54
0
0
48
51
1.00

Tables:   1

The End!