Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1200

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2383
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36


Found at i:540 original size:16 final size:16

Alignment explanation


    Indices: 515--553  Score: 62
    Period size: 16  Copynumber: 2.5  Consensus size: 16

        505 AATCAAATCG

                            
        515 AAACTAAAATATATTT
          1 AAACTAAAATATATTT

                 *          
        531 AAACTTAAATATATTT
          1 AAACTAAAATATATTT

                    
        547 AAA-TAAA
          1 AAACTAAA

        554 GTTCACATAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15    3  0.14
  16   18  0.86

ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36


Consensus pattern (16 bp):   
AAACTAAAATATATTT
Done.