Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold304
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1004668
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 49120 characters in sequence are not A, C, G, or T
File 3 of 4
Found at i:636711 original size:21 final size:22
Alignment explanation
Indices: 636663--636711 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 22
636653 TATTTCAGCT
*
636663 GTTAGGTTGTTAACAATAGCAACA
1 GTTAAGTTGTTAACAATAG--ACA
636687 GTTAAGTTGTTAACAATAG-CA
1 GTTAAGTTGTTAACAATAGACA
636708 GTTA
1 GTTA
636712 TTCAACTACT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 6 0.25
24 18 0.75
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (22 bp):
GTTAAGTTGTTAACAATAGACA
Found at i:641450 original size:27 final size:26
Alignment explanation
Indices: 641389--641450 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 26
641379 AAGTACCATA
641389 AAATTAAA-TATATTTGACTTTTTTC
1 AAATTAAATTATATTTGACTTTTTTC
**
641414 ATAAACAAATTATATTTGACTTTAATTT-
1 A-AATTAAATTATATTTGACTTT--TTTC
641442 AAATTAAAT
1 AAATTAAAT
641451 ATTTTAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
25 1 0.03
26 5 0.17
27 19 0.66
28 1 0.03
29 3 0.10
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (26 bp):
AAATTAAATTATATTTGACTTTTTTC
Found at i:642102 original size:346 final size:347
Alignment explanation
Indices: 641458--642154 Score: 1380
Period size: 346 Copynumber: 2.0 Consensus size: 347
641448 AATATTTTAA
641458 ATTTATATTTCATTTAATTATATATTAACTTTGAGAAAAATTCATTAAATTGTATTTATATAAAA
1 ATTTATATTTCATTTAATTATATATTAACTTTGAGAAAAATTCATTAAATTGTATTTATATAAAA
641523 TTAATTAGTTCTATTATTGAAAATGTTCTAATTATATATATTGACTTTTTTCGCATTTTTAATCA
66 TTAATTAGTTCTATTATTGAAAATGTTCTAATTATATATATTGACTTTTTTCGCATTTTTAATCA
641588 GATCCCTTTTTCTTTCCTGATTTAGCCTCTACATTTTGCATCGTTCCATTTGGGTCCAGCTTGCA
131 GATCCCTTTTTCTTTCCTGATTTAGCCTCTACATTTTGCATCGTTCCATTTGGGTCCAGCTTGCA
641653 ACACTGTGTTCTGGGGAAGCGGGATATTTCCCAATCGGCCCCCCTTGTAATACGCGTGTTGCAGC
196 ACACTGTGTTCTGGGGAAGCGGGATATTTCCCAATCGGCCCCCCTTGTAATACGCGTGTTGCAGC
641718 GTAGCCCCTCAATTTCCTTTAATCTTTTTTTTTCCTGTCGATTTAATTCTGCTTATAATTTAATC
261 GTAGCCCCTCAATTTCCTTTAATCTTTTTTTTTCCTGTCGATTTAATTCTGCTTATAATTTAATC
641783 CTTCTTGGTATTTAATGCTATT
326 CTTCTTGGTATTTAATGCTATT
641805 ATTTATATTT-ATTTAATTATATATTAACTTTGAGAAAAATTCATTAAATTGTATTTATATAAAA
1 ATTTATATTTCATTTAATTATATATTAACTTTGAGAAAAATTCATTAAATTGTATTTATATAAAA
641869 TTAATTAGTTCTATTATTGAAAATGTTCTAATTATATATATTGACTTTTTTCGCATTTTTAATCA
66 TTAATTAGTTCTATTATTGAAAATGTTCTAATTATATATATTGACTTTTTTCGCATTTTTAATCA
641934 GATCCCTTTTTCTTTCCTGATTTAGCCTCTACATTTTGCATCGTTCCATTTGGGTCCAGCTTGCA
131 GATCCCTTTTTCTTTCCTGATTTAGCCTCTACATTTTGCATCGTTCCATTTGGGTCCAGCTTGCA
641999 ACACTGTGTTCTGGGGAAGCGGGATATTTCCCAATCGGCCCCCCTTGTAATACGCGTGTTGCAGC
196 ACACTGTGTTCTGGGGAAGCGGGATATTTCCCAATCGGCCCCCCTTGTAATACGCGTGTTGCAGC
642064 GTAGCCCCTCAATTTCCTTTAATCTTTTTTTTTCCTGTCGATTTAATTCTGCTTATAATTTAATC
261 GTAGCCCCTCAATTTCCTTTAATCTTTTTTTTTCCTGTCGATTTAATTCTGCTTATAATTTAATC
642129 CTTCTTGGTATTTAATGCTATT
326 CTTCTTGGTATTTAATGCTATT
642151 -TTTA
1 ATTTA
642155 CGAAATTTGT
Statistics
Matches: 350, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
345 4 0.01
346 336 0.96
347 10 0.03
ACGTcount: A:0.25, C:0.18, G:0.13, T:0.45
Consensus pattern (347 bp):
ATTTATATTTCATTTAATTATATATTAACTTTGAGAAAAATTCATTAAATTGTATTTATATAAAA
TTAATTAGTTCTATTATTGAAAATGTTCTAATTATATATATTGACTTTTTTCGCATTTTTAATCA
GATCCCTTTTTCTTTCCTGATTTAGCCTCTACATTTTGCATCGTTCCATTTGGGTCCAGCTTGCA
ACACTGTGTTCTGGGGAAGCGGGATATTTCCCAATCGGCCCCCCTTGTAATACGCGTGTTGCAGC
GTAGCCCCTCAATTTCCTTTAATCTTTTTTTTTCCTGTCGATTTAATTCTGCTTATAATTTAATC
CTTCTTGGTATTTAATGCTATT
Found at i:644839 original size:20 final size:20
Alignment explanation
Indices: 644814--644853 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
644804 AATATTTTCC
*
644814 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
644834 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
644854 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:644859 original size:34 final size:34
Alignment explanation
Indices: 644802--644867 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 34
644792 CAAACACCAG
*
644802 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTAC-GAAAAGT
644837 AAAACATTTTCCAG-AAATCATTTTACGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACGAAAA
644868 ATATTTTACT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.40
35 13 0.43
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.32
Consensus pattern (34 bp):
AAAACATTTTCCAGTAAATCATTTTACGAAAAGT
Found at i:646960 original size:3 final size:3
Alignment explanation
Indices: 646954--646996 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
646944 AATAACAGTG
*
646954 ATA ATA ATA ATA ATA A-A TTA ATA ATA ATA GATTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA ATA ATA ATA
646997 TTACTGAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 1 0.03
3 30 0.86
4 2 0.06
5 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:646977 original size:14 final size:14
Alignment explanation
Indices: 646958--646996 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
646948 ACAGTGATAA
646958 TAATAATAATAAAT
1 TAATAATAATAAAT
*
646972 TAATAATAATAGAT
1 TAATAATAATAAAT
646986 TAATAATAATA
1 TAATAATAATA
646997 TTACTGAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (14 bp):
TAATAATAATAAAT
Found at i:646977 original size:17 final size:17
Alignment explanation
Indices: 646954--646996 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
646944 AATAACAGTG
646954 ATAATAATAATA-ATAA
1 ATAATAATAATAGATAA
*
646970 ATTAATAATAATAGATTA
1 A-TAATAATAATAGATAA
646988 ATAATAATA
1 ATAATAATA
646997 TTACTGAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 1 0.04
17 19 0.79
18 4 0.17
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
ATAATAATAATAGATAA
Found at i:649865 original size:13 final size:11
Alignment explanation
Indices: 649836--649861 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
649826 ATTTTTTAAA
649836 TTTTAAAATAT
1 TTTTAAAATAT
649847 TTTTAAAATAT
1 TTTTAAAATAT
649858 TTTT
1 TTTT
649862 TTAATTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:655291 original size:40 final size:42
Alignment explanation
Indices: 655247--655334 Score: 153
Period size: 40 Copynumber: 2.1 Consensus size: 42
655237 AATATATTTA
*
655247 TTTTTTAAATTTTAAAATATTTTT-ACATAC-TTTTTTAATT
1 TTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
655287 TTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
1 TTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
655329 TTTTTT
1 TTTTTT
655335 TTAAAAAACT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
40 24 0.53
41 5 0.11
42 16 0.36
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (42 bp):
TTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
Found at i:655325 original size:14 final size:14
Alignment explanation
Indices: 655306--655352 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
655296 TTTTAAAATA
655306 TTTTTAAAATACTT
1 TTTTTAAAATACTT
**
655320 TTTTT--AATTTTT
1 TTTTTAAAATACTT
*
655332 TTTTTAAAAAACTT
1 TTTTTAAAATACTT
655346 TTTTTAA
1 TTTTTAA
655353 TTTTTAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
12 10 0.38
14 16 0.62
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTTAAAATACTT
Found at i:655345 original size:26 final size:26
Alignment explanation
Indices: 655306--655357 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
655296 TTTTAAAATA
*
655306 TTTTTAAAATACTTTTTTTAATTTTT
1 TTTTTAAAAAACTTTTTTTAATTTTT
655332 TTTTTAAAAAACTTTTTTTAATTTTT
1 TTTTTAAAAAACTTTTTTTAATTTTT
655358 AAAATAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (26 bp):
TTTTTAAAAAACTTTTTTTAATTTTT
Found at i:655365 original size:26 final size:26
Alignment explanation
Indices: 655310--655365 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
655300 AAAATATTTT
* ****
655310 TAAAATACTTTTTTTAATTTTTTTTT
1 TAAAAAACTTTTTTTAATTTTTAAAA
655336 TAAAAAACTTTTTTTAATTTTTAAAA
1 TAAAAAACTTTTTTTAATTTTTAAAA
655362 TAAA
1 TAAA
655366 TTTTTGGTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (26 bp):
TAAAAAACTTTTTTTAATTTTTAAAA
Found at i:658884 original size:15 final size:14
Alignment explanation
Indices: 658856--658898 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
658846 AAACTAATAA
*
658856 ATATGTAATATTTTG
1 ATATATAAT-TTTTG
*
658871 ATATATATATTTTTT
1 ATATATA-ATTTTTG
658886 ATATATAATTTTT
1 ATATATAATTTTT
658899 ATNNNNNNNN
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 6 0.24
15 17 0.68
16 2 0.08
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (14 bp):
ATATATAATTTTTG
Found at i:664468 original size:21 final size:21
Alignment explanation
Indices: 664444--664493 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
664434 TATAGTAGAT
*
664444 TTTTATTTATTTATTTA-TTTA
1 TTTTATTTA-ATATTTATTTTA
*
664465 TTTT-TCTTAATGTTTATTTTA
1 TTTTAT-TTAATATTTATTTTA
664486 TTTTATTT
1 TTTTATTT
664494 TTGGTTTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
20 6 0.25
21 17 0.71
22 1 0.04
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTTATTTAATATTTATTTTA
Found at i:668482 original size:35 final size:35
Alignment explanation
Indices: 668436--668510 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
668426 TATCTCTGAG
668436 AATCTCTATATCAAGTATCTTCTTTGCTAGTCCCA
1 AATCTCTATATCAAGTATCTTCTTTGCTAGTCCCA
668471 AATCTCTATATCAAGTATCTTCTTTGCTAGTCCCA
1 AATCTCTATATCAAGTATCTTCTTTGCTAGTCCCA
668506 AATCT
1 AATCT
668511 TTCATCTCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (35 bp):
AATCTCTATATCAAGTATCTTCTTTGCTAGTCCCA
Found at i:668527 original size:35 final size:35
Alignment explanation
Indices: 668436--668527 Score: 132
Period size: 35 Copynumber: 2.6 Consensus size: 35
668426 TATCTCTGAG
*
668436 AATCTCTATATCAAGTATCTTCTTTGCTAGTCCCA
1 AATCTCTATATCAAATATCTTCTTTGCTAGTCCCA
*
668471 AATCTCTATATCAAGTATCTTCTTTGCTAGTCCCA
1 AATCTCTATATCAAATATCTTCTTTGCTAGTCCCA
* *
668506 AATCTTTCATCTCAAAT-TCTTC
1 AATCTCT-ATATCAAATATCTTC
668528 ACTAAGTTGG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
35 46 0.87
36 7 0.13
ACGTcount: A:0.26, C:0.26, G:0.07, T:0.41
Consensus pattern (35 bp):
AATCTCTATATCAAATATCTTCTTTGCTAGTCCCA
Found at i:672871 original size:18 final size:18
Alignment explanation
Indices: 672855--672895 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
672845 TATTTTTTAG
672855 ATTTTTTGAAAAATTTATA
1 ATTTTTT-AAAAATTTATA
*
672874 ATTTTTTAAAAATATA-A
1 ATTTTTTAAAAATTTATA
672891 ATTTT
1 ATTTT
672896 CGAATTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.29
18 8 0.38
19 7 0.33
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATTTTTTAAAAATTTATA
Found at i:673431 original size:137 final size:137
Alignment explanation
Indices: 673185--673455 Score: 515
Period size: 137 Copynumber: 2.0 Consensus size: 137
673175 TGACAAAAAA
673185 GTAAATATTAATTAACGGTGACATCACTTTGAGTTCCCTTTTAAAAGTATAGTAAAAATACTTAT
1 GTAAATATTAATTAACGGTGACATCACTTTGAGTTCCCTTTTAAAAGTATAGTAAAAATACTTAT
* *
673250 GAAAATTTTGATTTAATTGTAGTTAAAAAGTATTTTTGAAAAATAAAATTTTTATTTTAGACATG
66 GAAAAGTTTGATTTAATTGTAATTAAAAAGTATTTTTGAAAAATAAAATTTTTATTTTAGACATG
673315 ATATCGT
131 ATATCGT
*
673322 GTAAATATTAATTAACGGTGACATCACTTTGGGTTCCCTTTTAAAAGTATAGTAAAAATACTTAT
1 GTAAATATTAATTAACGGTGACATCACTTTGAGTTCCCTTTTAAAAGTATAGTAAAAATACTTAT
673387 GAAAAGTTTGATTTAATTGTAATTAAAAAGTATTTTTGAAAAATAAAATTTTTATTTTAGACATG
66 GAAAAGTTTGATTTAATTGTAATTAAAAAGTATTTTTGAAAAATAAAATTTTTATTTTAGACATG
673452 ATAT
131 ATAT
673456 TGTGAAGTAA
Statistics
Matches: 131, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 131 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.41
Consensus pattern (137 bp):
GTAAATATTAATTAACGGTGACATCACTTTGAGTTCCCTTTTAAAAGTATAGTAAAAATACTTAT
GAAAAGTTTGATTTAATTGTAATTAAAAAGTATTTTTGAAAAATAAAATTTTTATTTTAGACATG
ATATCGT
Found at i:676005 original size:22 final size:23
Alignment explanation
Indices: 675952--676007 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
675942 CCCGTTTTTA
* * *
675952 ATTAAAATTAAAATTATTTTTTT
1 ATTAAAATTAAAACTATATTGTT
*
675975 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
675997 ATTAAAATTAA
1 ATTAAAATTAA
676008 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:676020 original size:16 final size:16
Alignment explanation
Indices: 675983--676022 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
675973 TTAATAAAAT
* *
675983 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
675999 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
676015 TAAAATTA
1 TAAAATTA
676023 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:678457 original size:18 final size:17
Alignment explanation
Indices: 678436--678483 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
678426 ATATTTTTCA
678436 AAAAAAATATATAAATT
1 AAAAAAATATATAAATT
*
678453 CAAAAAAT-TA-AAATT
1 AAAAAAATATATAAATT
678468 ATTAAAAAATATATAA
1 A--AAAAAATATATAA
678484 TAAAATCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 5 0.20
16 2 0.08
17 14 0.56
18 2 0.08
19 2 0.08
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAAAATATATAAATT
Found at i:679139 original size:20 final size:21
Alignment explanation
Indices: 679091--679140 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
679081 TCAATGACCC
*
679091 TCAAAATTTTAATTAAACTTT
1 TCAAAATTTTAATTAAACTTA
679112 TCAAAATTTTAATTAAA-TTCA
1 TCAAAATTTTAATTAAACTT-A
679133 T-AAAATTT
1 TCAAAATTT
679141 AATGCACCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (21 bp):
TCAAAATTTTAATTAAACTTA
Found at i:680031 original size:20 final size:21
Alignment explanation
Indices: 679983--680032 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
679973 TCAATAACCC
*
679983 TCAAAATTTTAATTAAACTTT
1 TCAAAATTTTAATTAAACTTG
680004 TCAAAATTTTAATTAAA-TTCG
1 TCAAAATTTTAATTAAACTT-G
680025 T-AAAATTT
1 TCAAAATTT
680033 AATGCACCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (21 bp):
TCAAAATTTTAATTAAACTTG
Found at i:690341 original size:41 final size:41
Alignment explanation
Indices: 690296--690415 Score: 195
Period size: 41 Copynumber: 2.9 Consensus size: 41
690286 ACTGGCATTT
* *
690296 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACCGGCGTCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCATCA
*
690337 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACTGGCATCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCATCA
* *
690378 AGCCTGCTAGACTTAAAGTCTGAAAGGTTTCACTGGCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCA
690416 ATAAACCTGA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (41 bp):
AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCATCA
Found at i:690995 original size:2 final size:2
Alignment explanation
Indices: 690988--691022 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
690978 AATATTAAGT
690988 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
691023 ATGTATTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:696189 original size:30 final size:30
Alignment explanation
Indices: 696129--696190 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
696119 GCTTTTTGAA
* * * * *
696129 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAAAAACAACCAAATTTT
696159 AATATTTACAAAAAAAAACAACCAAATTTT
1 AATATTTACAAAAAAAAACAACCAAATTTT
696189 AA
1 AA
696191 AAATAATTCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.55, C:0.11, G:0.03, T:0.31
Consensus pattern (30 bp):
AATATTTACAAAAAAAAACAACCAAATTTT
Found at i:706513 original size:22 final size:22
Alignment explanation
Indices: 706462--706513 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
706452 TTAGAGACTA
*
706462 AATTGAAGAAATTGAAATTTCT
1 AATTGAATAAATTGAAATTTCT
706484 AATTGAATAAATTGAAAATTT-T
1 AATTGAATAAATTG-AAATTTCT
706506 AATTGAAT
1 AATTGAAT
706514 GTAATTTGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
22 22 0.79
23 6 0.21
ACGTcount: A:0.48, C:0.02, G:0.12, T:0.38
Consensus pattern (22 bp):
AATTGAATAAATTGAAATTTCT
Found at i:709570 original size:17 final size:17
Alignment explanation
Indices: 709548--709589 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
709538 CAAATATGGA
*
709548 ATGTGATTTTCAAAGAT
1 ATGTGATCTTCAAAGAT
709565 ATGTGATCTTCAAAGAT
1 ATGTGATCTTCAAAGAT
709582 ATGTGATC
1 ATGTGATC
709590 CTAGACATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (17 bp):
ATGTGATCTTCAAAGAT
Found at i:710306 original size:20 final size:20
Alignment explanation
Indices: 710281--710344 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
710271 GACTGGTAGG
710281 GATGACGCCATTGAGGCTAT
1 GATGACGCCATTGAGGCTAT
*
710301 GATGACG--A-TGACTGG-TAGG
1 GATGACGCCATTGA--GGCTA-T
*
710320 GATGATGCCATTGAGGCTAT
1 GATGACGCCATTGAGGCTAT
710340 GATGA
1 GATGA
710345 AGGCCTTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 14
0.67 0.06 0.27
Matches are distributed among these distances:
17 3 0.09
18 3 0.09
19 8 0.24
20 14 0.41
21 3 0.09
22 3 0.09
ACGTcount: A:0.27, C:0.14, G:0.34, T:0.25
Consensus pattern (20 bp):
GATGACGCCATTGAGGCTAT
Found at i:710312 original size:39 final size:39
Alignment explanation
Indices: 710268--710344 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
710258 ATGTTGAAAA
710268 GATGACTGGTAGGGATGACGCCATTGAGGCTATGATGAC
1 GATGACTGGTAGGGATGACGCCATTGAGGCTATGATGAC
*
710307 GATGACTGGTAGGGATGATGCCATTGAGGCTATGATGA
1 GATGACTGGTAGGGATGACGCCATTGAGGCTATGATGA
710345 AGGCCTTGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.26, C:0.13, G:0.36, T:0.25
Consensus pattern (39 bp):
GATGACTGGTAGGGATGACGCCATTGAGGCTATGATGAC
Found at i:715689 original size:51 final size:50
Alignment explanation
Indices: 715606--715800 Score: 194
Period size: 51 Copynumber: 3.8 Consensus size: 50
715596 GATCAATGCT
* *
715606 ATCCGGTACACATAGTAGCCTACACTTTGTACTACACATGTGACAAATACC
1 ATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACAAA-ACC
* * * * * * *
715657 ATCCGGTACACGTAGTAGGCTGCACATAGTACTACACACGTGCCCAAAGCT
1 ATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTG-ACAAAACC
* *
715708 ATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCATAACT
1 ATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CAAAACC
*** * * *
715759 ATCTTATACTCAT-GATAGCCTACACATAGTACTACACATGTG
1 ATCCGGTACACATAG-TAGCCTGCACTTAGTACTACACATGTG
715801 TTCTCATGAC
Statistics
Matches: 119, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
50 1 0.01
51 114 0.96
52 4 0.03
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
ATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACAAAACC
Found at i:715785 original size:102 final size:102
Alignment explanation
Indices: 715603--715796 Score: 257
Period size: 102 Copynumber: 1.9 Consensus size: 102
715593 TATGATCAAT
* *
715603 GCTATCCGGTACACATAGTAGCCTACACTTTGTACTACACATGTGACAAATACCATCCGGTACAC
1 GCTATCCGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACAAATACCATCCGATACAC
* * *
715668 GTAGTAGGCTGCACATAGTACTACACACGTGCCCAAA
66 ATAGTAGCCTACACATAGTACTACACACGTGCCCAAA
* * * ** *
715705 GCTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGAC-CATAACTATCTTATACT
1 GCTATCCGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACAAAT-ACCATCCGATACA
715769 CAT-GATAGCCTACACATAGTACTACACA
65 CATAG-TAGCCTACACATAGTACTACACA
715797 TGTGTTCTCA
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
101 3 0.04
102 76 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (102 bp):
GCTATCCGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACAAATACCATCCGATACAC
ATAGTAGCCTACACATAGTACTACACACGTGCCCAAA
Found at i:720202 original size:255 final size:256
Alignment explanation
Indices: 719739--720251 Score: 1019
Period size: 255 Copynumber: 2.0 Consensus size: 256
719729 TGGGAAAATT
719739 TTATTTTAATATTTTTAGTATTTTTGATGTATTATATATTTTTTAAAAAATTATATAAAAAATTA
1 TTATTTTAATATTTTTAGTATTTTTGATGTATTATATATTTTTTAAAAAATTATATAAAAAATTA
719804 ATACGGGTAGGTCGGACCTTGATTTTAGCATTTTTATCCGGGCTGGGCTTGGGTAAAATTTTAAG
66 ATACGGGTAGGTCGGACCTTGATTTTAGCATTTTTATCCGGGCTGGGCTTGGGTAAAATTTTAAG
719869 ACCATTTTATATAAAACCCCTTTATTATTATTTAACAACTCATCTAGTCAAAAACGTTTACCTTG
131 ACCATTTTATATAAAACCCCTTTATTATTATTTAACAACTCATCTAGTCAAAAACGTTTACCTTG
719934 TTATCTACTATTGTTATAAAAGGTTGATCTAAAATCGCGGAAGCTTTTGAAAACTCTAATG
196 TTATCTACTATTGTTATAAAAGGTTGATCTAAAATCGCGGAAGCTTTTGAAAACTCTAATG
719995 TTATTTTAATA-TTTTAGTATTTTTGATGTATTATATATTTTTTAAAAAATTATATAAAAAATTA
1 TTATTTTAATATTTTTAGTATTTTTGATGTATTATATATTTTTTAAAAAATTATATAAAAAATTA
720059 ATACGGGTAGGTCGGACCTTGATTTTAGCATTTTTATCCGGGCTGGGCTTGGGTAAAATTTTAAG
66 ATACGGGTAGGTCGGACCTTGATTTTAGCATTTTTATCCGGGCTGGGCTTGGGTAAAATTTTAAG
720124 ACCATTTTATATAAAACCCCTTTATTATTATTTAACAACTCATCTAGTCAAAAACGTTTACCTTG
131 ACCATTTTATATAAAACCCCTTTATTATTATTTAACAACTCATCTAGTCAAAAACGTTTACCTTG
720189 TTATCTACTATTGTTATAAAAGGTTGATCTAAAATCGCGGAAGCTTTTGAAAACTCTAATG
196 TTATCTACTATTGTTATAAAAGGTTGATCTAAAATCGCGGAAGCTTTTGAAAACTCTAATG
720250 TT
1 TT
720252 TAAAATTCGT
Statistics
Matches: 257, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
255 246 0.96
256 11 0.04
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.42
Consensus pattern (256 bp):
TTATTTTAATATTTTTAGTATTTTTGATGTATTATATATTTTTTAAAAAATTATATAAAAAATTA
ATACGGGTAGGTCGGACCTTGATTTTAGCATTTTTATCCGGGCTGGGCTTGGGTAAAATTTTAAG
ACCATTTTATATAAAACCCCTTTATTATTATTTAACAACTCATCTAGTCAAAAACGTTTACCTTG
TTATCTACTATTGTTATAAAAGGTTGATCTAAAATCGCGGAAGCTTTTGAAAACTCTAATG
Found at i:721237 original size:27 final size:26
Alignment explanation
Indices: 721185--721259 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
721175 ACATAAAGCC
*
721185 ATAACAGTCATTTCATCTCCTA-GGGGT
1 ATAACAGTCATTTTA-C-CCTATGGGGT
721212 ATAACAGTCATTTTACCCTATGGGGGT
1 ATAACAGTCATTTTACCCTAT-GGGGT
* **
721239 ATTATGGTCATTTTACCCTAT
1 ATAACAGTCATTTTACCCTAT
721260 AGGGATCTCG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.10
26 1 0.02
27 37 0.88
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (26 bp):
ATAACAGTCATTTTACCCTATGGGGT
Found at i:738205 original size:114 final size:113
Alignment explanation
Indices: 737871--738219 Score: 395
Period size: 113 Copynumber: 3.1 Consensus size: 113
737861 CGCTAACCCT
* *
737871 AAAATGCCGTAAAAGAACATAATTAGTGGCGTTTA-TTGTAAGTGCCGCAAAATACCTTAACCAA
1 AAAACGCCGTAAAAGAACAT-ATTAGTGGCGTTTATTTGTAAGCGCCGCAAAATACCTTAACCAA
* * * *
737935 AACACAGCGTTTGG-TTCAATTGTATATTAGAATTAGTGGCGTTTTCGAT
65 AACGCAGCGTTTGGTTTCGA-GGTATATTAGAATTAGTGGCGTTTTCGAA
* * **** * *
737984 AAAACGCCGCT-AAAGAATAGTATTAGCGGCGTTT-TACAAAAAGCGCCGC-AAATATCTTAACG
1 AAAACGCCG-TAAAAGAACA-TATTAGTGGCGTTTAT-TTGTAAGCGCCGCAAAATACCTTAACC
* * * *
738046 AAAACGCAGCGTTTGGTCTCGAGGTAGATTAGTATTAGTGGCGTTTT-TAA
63 AAAACGCAGCGTTTGGTTTCGAGGTATATTAGAATTAGTGGCGTTTTCGAA
738096 ACAAACGCCGTAAAAGAACATCATTAGTGGCGTTTATTTGTAAGCGCCGCAAAATACCTTAACCA
1 A-AAACGCCGTAAAAGAACAT-ATTAGTGGCGTTTATTTGTAAGCGCCGCAAAATACCTTAACCA
* * * *
738161 AAACGCAGCGCTTGGTTTTGAGGTATATTAGAATTAGTGGCGTTTACGAT
64 AAACGCAGCGTTTGGTTTCGAGGTATATTAGAATTAGTGGCGTTTTCGAA
738211 AAAACGCCG
1 AAAACGCCG
738220 CAAATATCTT
Statistics
Matches: 191, Mismatches: 34, Indels: 21
0.78 0.14 0.09
Matches are distributed among these distances:
112 4 0.02
113 111 0.58
114 74 0.39
115 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (113 bp):
AAAACGCCGTAAAAGAACATATTAGTGGCGTTTATTTGTAAGCGCCGCAAAATACCTTAACCAAA
ACGCAGCGTTTGGTTTCGAGGTATATTAGAATTAGTGGCGTTTTCGAA
Found at i:738250 original size:74 final size:75
Alignment explanation
Indices: 738140--738279 Score: 201
Period size: 74 Copynumber: 1.9 Consensus size: 75
738130 TATTTGTAAG
* * *
738140 CGCCGCAAAATACCTTAACCAAAACGCAGCGCTTGGTTTTGAGGTATATTAGAATTAGTGGCGTT
1 CGCCGCAAAATACCTTAACCAAAACGCACCGCTTGGTCTTGAGGTAGATTAGAATTAGTGGCGTT
738205 TACGATAAAA
66 TACGATAAAA
* * * **
738215 CGCCGC-AAATATCTTAACGAAAACGCACCGTTTGGTCTTGAGGTAGATTAGTTTTAGTGGCGTT
1 CGCCGCAAAATACCTTAACCAAAACGCACCGCTTGGTCTTGAGGTAGATTAGAATTAGTGGCGTT
738279 T
66 T
738280 TTAAAAAAAC
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
74 51 0.89
75 6 0.11
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (75 bp):
CGCCGCAAAATACCTTAACCAAAACGCACCGCTTGGTCTTGAGGTAGATTAGAATTAGTGGCGTT
TACGATAAAA
Found at i:738331 original size:188 final size:188
Alignment explanation
Indices: 738005--738760 Score: 966
Period size: 188 Copynumber: 3.9 Consensus size: 188
737995 AAAGAATAGT
* * *
738005 ATTAGCGGCGTTTTAC-A-AAAAGCGCCGCAAATATCTTAACGAAAACGCAGCGTTTGGTCTCGA
1 ATTAGTGGCG-TTTACGATAAAA-CGCCGCAAATATCTTAACGAAAACGCACCGTTTGGTCTTGA
* *
738068 GGTAGATTAGTATTAGTGGCGTTTTTAAACAAACGCCGTAAAAGAACATCATTAGTGGCGTTTAT
64 GGTAGATTAGTATTAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTAT
*
738133 TTGTAAGCGCCGCAAAATACCTTAACCAAAACGCAGCGCTTGGTTTTGAGGTATATTAGA
129 TTGTAAGCGCCGCAAAATACCTTAACCAAAACGCAGCGTTTGGTTTTGAGGTATATTAGA
738193 ATTAGTGGCGTTTACGATAAAACGCCGCAAATATCTTAACGAAAACGCACCGTTTGGTCTTGAGG
1 ATTAGTGGCGTTTACGATAAAACGCCGCAAATATCTTAACGAAAACGCACCGTTTGGTCTTGAGG
* *
738258 TAGATTAGTTTTAGTGGCGTTTTTAAAAAAACGCTGTAAAAGAACATAATTAGTGGCGTTTACTT
66 TAGATTAGTATTAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTA-TT
* * * ** *
738323 T-CAAGCGCCGCAAAATACCTTAACCAAAACACAGCGTTTGG-ATCAATTGTATATTAGA
130 TGTAAGCGCCGCAAAATACCTTAACCAAAACGCAGCGTTTGGTTTTGA-GGTATATTAGA
* * * * * *
738381 ATTAGTGGCGTTTTCTATAAAACGCCGCTAAAGAATAGTATTAGCGGCGTATCACAATAAGCGCC
1 ATTAGTGGCGTTTACGATAAAACGCCGC---A-AATA-TCTTA---ACG----A-AA-ACGCACC
** * * * * *
738446 GCAAAT-ATCTTAACTAGAGGTAGATTAGTATTAGTGGCGTTTTTAAACAAATGCCGTAAAAGAA
52 G--TTTGGTCTT---GAGG--TAGATTAGTATTAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAA
*
738510 CATCATTAGTGGCGTTTATTTGTAAGCGCCGCAAAATACCTTAACCAAAACGCAGCGTTTGGTTT
110 CATAATTAGTGGCGTTTATTTGTAAGCGCCGCAAAATACCTTAACCAAAACGCAGCGTTTGGTTT
738575 TGAGGTATATTAGA
175 TGAGGTATATTAGA
*
738589 ATTAGTGGCGTTTACGATAAAACGCCGCAAATATCTTAACGAAAACGCACCGTTTGGTCTTGAGC
1 ATTAGTGGCGTTTACGATAAAACGCCGCAAATATCTTAACGAAAACGCACCGTTTGGTCTTGAGG
* *
738654 TAGATTAGTTTTAGTGGCGTTATTAAAAAAA-GCCGTAAAAGAACATAATTAGTGGCGTTTATTT
66 TAGATTAGTATTAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTT
738718 GTAAGCGCCGCAAAATACCTTAACCAAAACGCAGCGTTTGGTT
131 GTAAGCGCCGCAAAATACCTTAACCAAAACGCAGCGTTTGGTT
738761 NNNNNNNNNN
Statistics
Matches: 489, Mismatches: 51, Indels: 57
0.82 0.09 0.10
Matches are distributed among these distances:
187 82 0.17
188 210 0.43
189 7 0.01
190 2 0.00
191 1 0.00
192 5 0.01
193 8 0.02
194 6 0.01
195 2 0.00
196 3 0.01
200 3 0.01
201 2 0.00
202 6 0.01
203 8 0.02
204 5 0.01
205 1 0.00
206 2 0.00
207 3 0.01
208 131 0.27
209 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (188 bp):
ATTAGTGGCGTTTACGATAAAACGCCGCAAATATCTTAACGAAAACGCACCGTTTGGTCTTGAGG
TAGATTAGTATTAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTT
GTAAGCGCCGCAAAATACCTTAACCAAAACGCAGCGTTTGGTTTTGAGGTATATTAGA
Found at i:738643 original size:74 final size:75
Alignment explanation
Indices: 738536--738674 Score: 199
Period size: 74 Copynumber: 1.9 Consensus size: 75
738526 TATTTGTAAG
* * * *
738536 CGCCGCAAAATACCTTAACCAAAACGCAGCGTTTGGTTTTGAGGTATATTAGAATTAGTGGCGTT
1 CGCCGCAAAATACCTTAACCAAAACGCACCGTTTGGTCTTGAGCTAGATTAGAATTAGTGGCGTT
738601 TACGATAAAA
66 TACGATAAAA
* * **
738611 CGCCGC-AAATATCTTAACGAAAACGCACCGTTTGGTCTTGAGCTAGATTAGTTTTAGTGGCGTT
1 CGCCGCAAAATACCTTAACCAAAACGCACCGTTTGGTCTTGAGCTAGATTAGAATTAGTGGCGTT
738675 ATTAAAAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
74 50 0.89
75 6 0.11
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (75 bp):
CGCCGCAAAATACCTTAACCAAAACGCACCGTTTGGTCTTGAGCTAGATTAGAATTAGTGGCGTT
TACGATAAAA
Found at i:740898 original size:35 final size:36
Alignment explanation
Indices: 740843--740913 Score: 135
Period size: 35 Copynumber: 2.0 Consensus size: 36
740833 AAATTGAATC
740843 ATTTACTGCTGTTCTGTCGAAAATTGCAAAATTGTT
1 ATTTACTGCTGTTCTGTCGAAAATTGCAAAATTGTT
740879 ATTTACTGCT-TTCTGTCGAAAATTGCAAAATTGTT
1 ATTTACTGCTGTTCTGTCGAAAATTGCAAAATTGTT
740914 CAAAACCTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 25 0.71
36 10 0.29
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.42
Consensus pattern (36 bp):
ATTTACTGCTGTTCTGTCGAAAATTGCAAAATTGTT
Found at i:745993 original size:43 final size:43
Alignment explanation
Indices: 745946--746048 Score: 111
Period size: 43 Copynumber: 2.3 Consensus size: 43
745936 GTTTGTGAAG
* * *
745946 TAAGCGCCG-TGAAAGAACACT-ACTTTTAGCGGTGTTTTTTTCC
1 TAAGCGCCGCT-AAAGAACA-TGACCTTTAGAGGCGTTTTTTTCC
*
745989 TAAGCGCCGCTAAAGAACATGACCTTTAGAGGCGTTTTTTTTCTG
1 TAAGCGCCGCTAAAGAACATGACCTTTAGAGGCG-TTTTTTTC-C
*
746034 TAAGCGCCGCAAAAG
1 TAAGCGCCGCTAAAG
746049 TTAGCGACGT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
42 1 0.02
43 27 0.53
44 9 0.18
45 14 0.27
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (43 bp):
TAAGCGCCGCTAAAGAACATGACCTTTAGAGGCGTTTTTTTCC
Found at i:748408 original size:20 final size:19
Alignment explanation
Indices: 748370--748418 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
748360 CTAATGTACA
* *
748370 ATTTTATACAGAAACTTTG
1 ATTTTATTCAGAAAATTTG
748389 ATTTTATTCATGAAAATTTG
1 ATTTTATTCA-GAAAATTTG
*
748409 ATTTGATTCA
1 ATTTTATTCA
748419 ATTCTCCCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.47
Consensus pattern (19 bp):
ATTTTATTCAGAAAATTTG
Found at i:752024 original size:25 final size:25
Alignment explanation
Indices: 751969--752016 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
751959 AGGCGAGACA
*
751969 TATATGTTAAAAGAATTGCAAGCCT
1 TATATGTTAAAAGAATTACAAGCCT
* *
751994 TATATGTTATAAGCATTACAAGC
1 TATATGTTAAAAGAATTACAAGC
752017 TTTTTATGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (25 bp):
TATATGTTAAAAGAATTACAAGCCT
Found at i:766401 original size:19 final size:19
Alignment explanation
Indices: 766377--766452 Score: 125
Period size: 19 Copynumber: 4.0 Consensus size: 19
766367 AATCTTCAGG
766377 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
766396 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
766415 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
766434 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
766453 TATGATTTTG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 51 1.00
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:766485 original size:22 final size:23
Alignment explanation
Indices: 766441--766486 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
766431 TATGATATGC
* *
766441 AATCTTAGATATTATGATTTTGT
1 AATCTTAGAGATTATAATTTTGT
766464 AATCTTAGAGATT-TAATTTTGT
1 AATCTTAGAGATTATAATTTTGT
766486 A
1 A
766487 GATACCTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.50
Consensus pattern (23 bp):
AATCTTAGAGATTATAATTTTGT
Found at i:767009 original size:30 final size:32
Alignment explanation
Indices: 766956--767033 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 32
766946 TTACAGTTCA
766956 AATTAGTCTTTTTTCATTTTCTTTATTTTT-TA-TT
1 AATTAGT-TTTTTT-A-TTTCTTT-TTTTTATATTT
766990 AATTAGTTTTTTTA-TTCTTTTTTTTATATTT
1 AATTAGTTTTTTTATTTCTTTTTTTTATATTT
*
767021 AGTTA-TTTTTTTA
1 AATTAGTTTTTTTA
767034 AGAAAATATA
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
29 5 0.12
30 16 0.39
31 6 0.15
32 1 0.02
33 6 0.15
34 7 0.17
ACGTcount: A:0.19, C:0.05, G:0.04, T:0.72
Consensus pattern (32 bp):
AATTAGTTTTTTTATTTCTTTTTTTTATATTT
Found at i:767122 original size:21 final size:22
Alignment explanation
Indices: 767089--767146 Score: 66
Period size: 21 Copynumber: 2.6 Consensus size: 22
767079 TAGTATAATA
* *
767089 TAATTATTTTTTTATTTATCTG
1 TAATTATTTTTTTATCTATATG
767111 TAATTA-TTTTTTATCTATATG
1 TAATTATTTTTTTATCTATATG
767132 T-ATATATTTATTTTA
1 TAAT-TATTT-TTTTA
767147 GTATACATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 2 0.06
21 16 0.52
22 8 0.26
23 5 0.16
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (22 bp):
TAATTATTTTTTTATCTATATG
Found at i:771550 original size:9 final size:9
Alignment explanation
Indices: 771536--771572 Score: 56
Period size: 9 Copynumber: 3.9 Consensus size: 9
771526 GGGGATGACA
771536 AAAAAAAAC
1 AAAAAAAAC
771545 AAAAAAAAAC
1 -AAAAAAAAC
771555 AAAAAAAAC
1 AAAAAAAAC
771564 AAAACAAAA
1 AAAA-AAAA
771573 TCTACCAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 13 0.50
10 13 0.50
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:771551 original size:11 final size:10
Alignment explanation
Indices: 771533--771572 Score: 64
Period size: 10 Copynumber: 4.0 Consensus size: 10
771523 AAAGGGGATG
771533 ACAAAAAAAA
1 ACAAAAAAAA
771543 ACAAAAAAAA
1 ACAAAAAAAA
771553 AC-AAAAAAA
1 ACAAAAAAAA
771562 ACAAAACAAAA
1 ACAAAA-AAAA
771573 TCTACCAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.32
10 15 0.54
11 4 0.14
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (10 bp):
ACAAAAAAAA
Found at i:773231 original size:45 final size:45
Alignment explanation
Indices: 773094--773231 Score: 122
Period size: 45 Copynumber: 3.1 Consensus size: 45
773084 ACAGATCAGT
* *
773094 GAAGATAGCAGATCTTGCCTTCCTCCATCGACAGCGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTCCATTGACAGTGAAGCAGATC
* ** ** * * * *
773139 GAA-A-A-CAAAGTCTTGCCTTATTCGGTTG-TAGTGGAGCAGGTT
1 GAAGATAGCAGA-TCTTGCCTTCCTCCATTGACAGTGAAGCAGATC
* *
773181 AAAGATAGCAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTCCATTGACAGTGAAGCAGATC
773226 GAAGAT
1 GAAGAT
773232 GGCGAATTTT
Statistics
Matches: 65, Mismatches: 23, Indels: 10
0.66 0.23 0.10
Matches are distributed among these distances:
42 14 0.22
43 15 0.23
44 15 0.23
45 21 0.32
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (45 bp):
GAAGATAGCAGATCTTGCCTTCCTCCATTGACAGTGAAGCAGATC
Found at i:773407 original size:132 final size:132
Alignment explanation
Indices: 773213--773617 Score: 666
Period size: 132 Copynumber: 3.1 Consensus size: 132
773203 CTGCATTGAC
* * *
773213 AGTGAAGCAGATCGAAGATGGCGAATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
773278 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
773343 GT
131 GT
** * * *
773345 AGTGGAGCAGATCGAAGATAACAAATTTTACCTCCCTGTGGTTATAGTGGAGTACATAGAAGCTA
1 AGTGGAGCAGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
773410 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTTCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
773475 GT
131 GT
*
773477 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* ** ** *
773542 GTAATTCCACTTCCCTAAACAACAACGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
773607 GT
131 GT
773609 AGTGGAGCA
1 AGTGGAGCA
773618 NNNNNNNNNN
Statistics
Matches: 251, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 251 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
GT
Found at i:774363 original size:22 final size:23
Alignment explanation
Indices: 774335--774377 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
774325 NNNNNNNNNN
774335 ATATGA-TATGCAATCTTAGAAG
1 ATATGATTATGCAATCTTAGAAG
* *
774357 ATATGATTTTGTAATCTTAGA
1 ATATGATTATGCAATCTTAGA
774378 GATTTAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (23 bp):
ATATGATTATGCAATCTTAGAAG
Found at i:781922 original size:42 final size:42
Alignment explanation
Indices: 781876--781966 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 42
781866 TGTATCAATG
* * *
781876 AAGCTCCCTATGTGAGCATAAGTGACAAGCTGTGTATAAGCA
1 AAGCTCCCCACGTGAGCATAAGTGACAAGCTATGTATAAGCA
* * * *
781918 AAGCTCCCCACGTGATCTTAAGTGACAAGTTATGTATCAGCA
1 AAGCTCCCCACGTGAGCATAAGTGACAAGCTATGTATAAGCA
781960 AAGCTCC
1 AAGCTCC
781967 TCGTGCAAGC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (42 bp):
AAGCTCCCCACGTGAGCATAAGTGACAAGCTATGTATAAGCA
Found at i:781980 original size:42 final size:41
Alignment explanation
Indices: 781876--781984 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 41
781866 TGTATCAATG
* * *
781876 AAGCTCCCTATGTGAGCATAAGTGACAAGCTGTGTATAAGCA
1 AAGCTCCC-ACGTGAGCTTAAGTGACAAGCTATGTATAAGCA
* * *
781918 AAGCTCCCCACGTGATCTTAAGTGACAAGTTATGTATCAGCA
1 AAGCT-CCCACGTGAGCTTAAGTGACAAGCTATGTATAAGCA
*
781960 AAGCT-CCTCGTGCAAGCTTAAGTGA
1 AAGCTCCCACGTG--AGCTTAAGTGA
781985 TTGTGCTCCT
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
40 6 0.11
42 47 0.84
43 3 0.05
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (41 bp):
AAGCTCCCACGTGAGCTTAAGTGACAAGCTATGTATAAGCA
Found at i:784001 original size:17 final size:17
Alignment explanation
Indices: 783955--784002 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
783945 TTAATTTTTT
783955 TTATAATTTTTAAATAA
1 TTATAATTTTTAAATAA
* *
783972 TTTTAATAATTTAAA-AA
1 TTATAAT-TTTTAAATAA
783989 TTATAATCTTTTAA
1 TTATAAT-TTTTAA
784003 TTTTTTAAAC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 19 0.76
18 6 0.24
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TTATAATTTTTAAATAA
Found at i:786174 original size:17 final size:16
Alignment explanation
Indices: 786141--786181 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 16
786131 CAGGAACACT
786141 TAAATAAATAACTAAA
1 TAAATAAATAACTAAA
*
786157 TAAATAAATACTCTAAA
1 TAAATAAATA-ACTAAA
786174 TAAATAAA
1 TAAATAAA
786182 CAACGAAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (16 bp):
TAAATAAATAACTAAA
Found at i:787880 original size:13 final size:14
Alignment explanation
Indices: 787852--787885 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
787842 ATGAGTTGCT
787852 ATATAATATGATATA
1 ATATAATA-GATATA
787867 ATATAATA-ATATA
1 ATATAATAGATATA
787880 ATATAA
1 ATATAA
787886 ATGGATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
15 8 0.42
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (14 bp):
ATATAATAGATATA
Found at i:815018 original size:13 final size:12
Alignment explanation
Indices: 814993--815057 Score: 53
Period size: 12 Copynumber: 5.3 Consensus size: 12
814983 GCTATAAAAT
814993 AATATTATATTA
1 AATATTATATTA
*
815005 AATATATATGTTA
1 AATAT-TATATTA
*
815018 AATAATA-ATTA
1 AATATTATATTA
*
815029 TATATTTATATT-
1 AATA-TTATATTA
*
815041 TATATTTATATTA
1 AATA-TTATATTA
815054 AATA
1 AATA
815058 ACTAATCCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
11 6 0.14
12 21 0.49
13 16 0.37
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (12 bp):
AATATTATATTA
Found at i:815034 original size:31 final size:30
Alignment explanation
Indices: 814974--815031 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
814964 AGCCCGACCA
814974 AAATATTATGCTATAAAATAATATTATATT
1 AAATATTATGCTATAAAATAATATTATATT
815004 AAATATATATG-T-T-AAATAATAATTATAT
1 AAATAT-TATGCTATAAAATAAT-ATTATAT
815032 ATTTATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
28 7 0.27
29 8 0.31
30 7 0.27
31 4 0.15
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (30 bp):
AAATATTATGCTATAAAATAATATTATATT
Found at i:822448 original size:25 final size:26
Alignment explanation
Indices: 822414--822462 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
822404 TCTCATCCCT
822414 ATTTTACCCGCAGT-AAATTTTGATG
1 ATTTTACCCGCAGTAAAATTTTGATG
**
822439 ATTTTACCCGTGGTAAAATTTTGA
1 ATTTTACCCGCAGTAAAATTTTGA
822463 GAAAATATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (26 bp):
ATTTTACCCGCAGTAAAATTTTGATG
Found at i:825730 original size:18 final size:18
Alignment explanation
Indices: 825707--825742 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
825697 AGAAAATTTT
825707 GAAGAAATTTTTAAAATA
1 GAAGAAATTTTTAAAATA
825725 GAAGAAATTTTTAAAATA
1 GAAGAAATTTTTAAAATA
825743 CCAATTCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (18 bp):
GAAGAAATTTTTAAAATA
Found at i:826475 original size:25 final size:26
Alignment explanation
Indices: 826441--826490 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
826431 TTAAGTCCAT
*
826441 AAATTCCAAATAAAAAAATGATTTTA
1 AAATTCCAAATAAAAAAATAATTTTA
**
826467 AAATT-CAAATTTAAAAATAATTTT
1 AAATTCCAAATAAAAAAATAATTTT
826491 CTTTTGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (26 bp):
AAATTCCAAATAAAAAAATAATTTTA
Found at i:832741 original size:50 final size:50
Alignment explanation
Indices: 832624--833160 Score: 686
Period size: 50 Copynumber: 10.6 Consensus size: 50
832614 TGTAATAACA
* * * ** * * *
832624 TGCCAAAGTCATGTCCCAGACATAGTCTTACATGGGATGTTTCCTGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * *
832673 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
832723 TGCCAACGCCATGTCCCAGACATGGTCTTAC-GGGAGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGG-GACCTCTCATCTCGG
* * * * * *
832773 TGCCAACACCATGTCCTAGACACGGTTTTACATGGGACCCCTCATCTAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
832823 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
832873 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCACATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
832923 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * * *
832973 TGCTAATGCCATGTCCCAGACATGGTCTTACATAGGACCTCTTATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
833023 TGCCAATGCCATGTCCCAGACATGGTCTTAC-GGGAGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGG-GACCTCTCATCTCGG
* *
833073 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GG
* *
833129 TGCTAATGCCATGTCCCAGACATGGTCTTACA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACA
833161 CTGGCTCACA
Statistics
Matches: 432, Mismatches: 44, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
48 1 0.00
49 40 0.09
50 350 0.81
51 4 0.01
53 5 0.01
56 32 0.07
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:844300 original size:47 final size:46
Alignment explanation
Indices: 844162--844302 Score: 124
Period size: 46 Copynumber: 3.0 Consensus size: 46
844152 AACAGATAAT
* * * * * *
844162 TGTGGACAATGCCACTAGAGTTGCAGTTAAACTGTCAG-ATCAGATATA
1 TGTGGTCAA-GCCACTATAATTGCAGTCAAGCTG-CAGAAT-AGATATG
* * * *
844210 TGTGGTCAAGCCACTAT-CTTGTAGTCAAGCTGCTGTAACAGATATG
1 TGTGGTCAAGCCACTATAATTGCAGTCAAGCTGCAG-AATAGATATG
*
844256 TGTGGTCGAGCCACTATAATTGCAGTCAAGCTGCCAGAATAGATATG
1 TGTGGTCAAGCCACTATAATTGCAGTCAAGCTG-CAGAATAGATATG
844303 CGGTTAAACC
Statistics
Matches: 75, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
45 2 0.03
46 33 0.44
47 30 0.40
48 10 0.13
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (46 bp):
TGTGGTCAAGCCACTATAATTGCAGTCAAGCTGCAGAATAGATATG
Found at i:845864 original size:51 final size:52
Alignment explanation
Indices: 845799--846021 Score: 161
Period size: 51 Copynumber: 4.4 Consensus size: 52
845789 GCATGGACTG
* * * * *
845799 TGTGTAGGCCACTATGTGAAATTGAAAGTGAT-GGTCACGTGTGTAGTCCTA
1 TGTGCAGGCTACTATGTGAAATAGAAAGTGATAGGTCACATGTGTAGTACTA
* * * *
845850 TGTGCATGCTACTATGTGTACTAG-AA-TGATAGGTCGCATGTGTAGTACTA
1 TGTGCAGGCTACTATGTGAAATAGAAAGTGATAGGTCACATGTGTAGTACTA
* * * *** * * * * *
845900 TGTACAGGCTACTATGCGTACCGGATAG-GTTCGATCACGTGTGTAGTACTA
1 TGTGCAGGCTACTATGTGAAATAGAAAGTGATAGGTCACATGTGTAGTACTA
* ** * *
845951 TATGCAGGCTACTACATG-TATCAGATAGTGAT-GGTCACATGTGTAGTACTA
1 TGTGCAGGCTACTATGTGAAAT-AGAAAGTGATAGGTCACATGTGTAGTACTA
*
846002 TGTGGAGGCTACTATGTGAA
1 TGTGCAGGCTACTATGTGAA
846022 CCGGTATCAT
Statistics
Matches: 129, Mismatches: 37, Indels: 11
0.73 0.21 0.06
Matches are distributed among these distances:
49 4 0.03
50 37 0.29
51 86 0.67
52 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.31
Consensus pattern (52 bp):
TGTGCAGGCTACTATGTGAAATAGAAAGTGATAGGTCACATGTGTAGTACTA
Found at i:846015 original size:102 final size:101
Alignment explanation
Indices: 845833--846017 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 101
845823 AAAGTGATGG
* * * ** *
845833 TCACGTGTGTAGTCCTATGTGCATGCTACTATGTGTACTAGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATATGCAGGCTACTACATGTACTAGAATGATAGGTCACATGTGTAGTAC
845898 TATGTACAGGCTACTATGCGTACCGGATAGGTTCGA
66 TATGTACAGGCTACTATGCGTACCGGATAGGTTCGA
845934 TCACGTGTGTAGTACTATATGCAGGCTACTACATGTA-TCAGATAGTGAT-GGTCACATGTGTAG
1 TCACGTGTGTAGTACTATATGCAGGCTACTACATGTACT-AGA-A-TGATAGGTCACATGTGTAG
**
845997 TACTATGTGGAGGCTACTATG
63 TACTATGTACAGGCTACTATG
846018 TGAACCGGTA
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
100 1 0.01
101 35 0.48
102 33 0.45
103 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATATGCAGGCTACTACATGTACTAGAATGATAGGTCACATGTGTAGTAC
TATGTACAGGCTACTATGCGTACCGGATAGGTTCGA
Found at i:846025 original size:102 final size:101
Alignment explanation
Indices: 845833--846025 Score: 255
Period size: 102 Copynumber: 1.9 Consensus size: 101
845823 AAAGTGATGG
* * * ** *
845833 TCACGTGTGTAGTCCTATGTGCATGCTACTATGTGTACTAGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATATGCAGGCTACTACATGTACTAGAATGATAGGTCACATGTGTAGTAC
*
845898 TATGTACAGGCTACTATGCGTACCGGATAGGTTCGA
66 TATGTACAGGCTACTATGCGAACCGGATAGGTTCGA
845934 TCACGTGTGTAGTACTATATGCAGGCTACTACATGTA-TCAGATAGTGAT-GGTCACATGTGTAG
1 TCACGTGTGTAGTACTATATGCAGGCTACTACATGTACT-AGA-A-TGATAGGTCACATGTGTAG
** *
845997 TACTATGTGGAGGCTACTATGTGAACCGG
63 TACTATGTACAGGCTACTATGCGAACCGG
846026 TATCATTAAT
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
100 1 0.01
101 35 0.44
102 39 0.49
103 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATATGCAGGCTACTACATGTACTAGAATGATAGGTCACATGTGTAGTAC
TATGTACAGGCTACTATGCGAACCGGATAGGTTCGA
Found at i:846264 original size:16 final size:16
Alignment explanation
Indices: 846243--846274 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
846233 TGATTGAAAG
*
846243 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
846259 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
846275 GCAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:848883 original size:15 final size:15
Alignment explanation
Indices: 848863--848893 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
848853 CTCTTGGCTC
848863 ACTAACCTAATTTTT
1 ACTAACCTAATTTTT
*
848878 ACTAACCTACTTTTT
1 ACTAACCTAATTTTT
848893 A
1 A
848894 GGATGTGACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (15 bp):
ACTAACCTAATTTTT
Found at i:855264 original size:26 final size:26
Alignment explanation
Indices: 855228--855305 Score: 93
Period size: 26 Copynumber: 3.0 Consensus size: 26
855218 CATTCATTCT
* *
855228 ATATTCCGCCATAAAGGCTTTATTTC
1 ATATTACGCCACAAAGGCTTTATTTC
* * *
855254 ATATTATGCCACAAAGTCTTTCTTTC
1 ATATTACGCCACAAAGGCTTTATTTC
* *
855280 ATATTACACCACAAAGGCTCTATTTC
1 ATATTACGCCACAAAGGCTTTATTTC
855306 TTAACATGTT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.37
Consensus pattern (26 bp):
ATATTACGCCACAAAGGCTTTATTTC
Found at i:858273 original size:64 final size:64
Alignment explanation
Indices: 858119--858280 Score: 200
Period size: 64 Copynumber: 2.5 Consensus size: 64
858109 TTGGCTTTAC
* * ** *
858119 GGAGGTTCGGTGGATGAGAATAGGGTCTTAGTATTGAATATCGTTAAGTAAATTATGGATTTGT
1 GGAGGTTCAGTGGATGAGAATAGGGTTTTAGTATCAAATATCGTTAAGAAAATTATGGATTTGT
* * *
858183 AGAGGTTCAGTTGATGAGAATAGGGTTTTAGTATCAAATATTGTTAAGAAAATTAT-GACTTTGT
1 GGAGGTTCAGTGGATGAGAATAGGGTTTTAGTATCAAATATCGTTAAGAAAATTATGGA-TTTGT
* ** *
858247 GGAGGTTAAGTGGATGAGAACGGGGTTTCAGTAT
1 GGAGGTTCAGTGGATGAGAATAGGGTTTTAGTAT
858281 AAGAAGAACA
Statistics
Matches: 83, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
63 2 0.02
64 81 0.98
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (64 bp):
GGAGGTTCAGTGGATGAGAATAGGGTTTTAGTATCAAATATCGTTAAGAAAATTATGGATTTGT
Found at i:866079 original size:20 final size:20
Alignment explanation
Indices: 866054--866147 Score: 116
Period size: 20 Copynumber: 4.7 Consensus size: 20
866044 CTCAGAGGGG
* *
866054 CTTCTACCGATACAACTCCA
1 CTTCTACCCATACAAGTCCA
*
866074 CTTCTACCCATACAAGTACA
1 CTTCTACCCATACAAGTCCA
*
866094 CTTCTACCCATTCAAGTCCA
1 CTTCTACCCATACAAGTCCA
* ** *
866114 TTTCTACTTATGCAAGTCCA
1 CTTCTACCCATACAAGTCCA
866134 CTTCTACCCATACA
1 CTTCTACCCATACA
866148 TCTTTTGAGT
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.29, C:0.36, G:0.05, T:0.30
Consensus pattern (20 bp):
CTTCTACCCATACAAGTCCA
Found at i:866563 original size:28 final size:29
Alignment explanation
Indices: 866521--866584 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
866511 AAGTAGAGTG
* * *
866521 TAAAAGGTTTCTAGTTGAGCCACAAAAGC
1 TAAAGGGTTTCTAGTTAAGCCACAAAAAC
*
866550 TAAAGGGTTT-TAGTTAAGCCATAAAAAC
1 TAAAGGGTTTCTAGTTAAGCCACAAAAAC
*
866578 TAGAGGG
1 TAAAGGG
866585 AATGTTTTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 21 0.70
29 9 0.30
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.25
Consensus pattern (29 bp):
TAAAGGGTTTCTAGTTAAGCCACAAAAAC
Found at i:881532 original size:24 final size:23
Alignment explanation
Indices: 881504--881558 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
881494 GTGGTATTTC
* *
881504 AGTGCAATTGAAATGTGGCACTTT
1 AGTGCAATT-AAAAGTGACACTTT
*
881528 GGTGCGAA-TAAAAGTGACACTTT
1 AGTGC-AATTAAAAGTGACACTTT
881551 AGTGCAAT
1 AGTGCAAT
881559 ACTGAGATTG
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
22 2 0.08
23 16 0.64
24 5 0.20
25 2 0.08
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (23 bp):
AGTGCAATTAAAAGTGACACTTT
Found at i:886653 original size:41 final size:41
Alignment explanation
Indices: 886596--886761 Score: 332
Period size: 41 Copynumber: 4.0 Consensus size: 41
886586 GGCTATTGAT
886596 TTACTAGATTCTCGAATCATTATGGCACATCATTAAAAAGA
1 TTACTAGATTCTCGAATCATTATGGCACATCATTAAAAAGA
886637 TTACTAGATTCTCGAATCATTATGGCACATCATTAAAAAGA
1 TTACTAGATTCTCGAATCATTATGGCACATCATTAAAAAGA
886678 TTACTAGATTCTCGAATCATTATGGCACATCATTAAAAAGA
1 TTACTAGATTCTCGAATCATTATGGCACATCATTAAAAAGA
886719 TTACTAGATTCTCGAATCATTATGGCACATCATTAAAAAGA
1 TTACTAGATTCTCGAATCATTATGGCACATCATTAAAAAGA
886760 TT
1 TT
886762 GGTTGTAACA
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 125 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.33
Consensus pattern (41 bp):
TTACTAGATTCTCGAATCATTATGGCACATCATTAAAAAGA
Found at i:896877 original size:21 final size:21
Alignment explanation
Indices: 896848--896897 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
896838 CCTTTATTGG
896848 TTTCTGTTCAACTCC-TATGAGC
1 TTTC-GTTCAAC-CCTTATGAGC
* *
896870 TTTCGTTCAACCCTTATGGGT
1 TTTCGTTCAACCCTTATGAGC
896891 TTTCGTT
1 TTTCGTT
896898 TAGCACTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.08
21 19 0.76
22 4 0.16
ACGTcount: A:0.14, C:0.24, G:0.16, T:0.46
Consensus pattern (21 bp):
TTTCGTTCAACCCTTATGAGC
Found at i:900282 original size:74 final size:74
Alignment explanation
Indices: 900161--900318 Score: 210
Period size: 74 Copynumber: 2.1 Consensus size: 74
900151 TAATGAGTAT
* * *
900161 GATTGAAAAGGTGTGTATATGAAATGAGTTATGGCATTGAGCTTATGAAATTTAAA-TTGTAATA
1 GATTGAAAAGGTATGTATATGAAATGAGCTATGGCATTGAGCTTATGAAA-TGAAAGTTGTAATA
* *
900225 TGTGTAAATG
65 TATATAAATG
* * * *
900235 GATTGAAAAGGTATGTATATGAAATGAGCTGTGTCATTGAGTTTATGAAATGAAAGTTGTGATAT
1 GATTGAAAAGGTATGTATATGAAATGAGCTATGGCATTGAGCTTATGAAATGAAAGTTGTAATAT
900300 ATATAAATG
66 ATATAAATG
*
900309 GTTTGAAAAG
1 GATTGAAAAG
900319 TTAACTAATT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
73 4 0.05
74 69 0.95
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.35
Consensus pattern (74 bp):
GATTGAAAAGGTATGTATATGAAATGAGCTATGGCATTGAGCTTATGAAATGAAAGTTGTAATAT
ATATAAATG
Found at i:900573 original size:21 final size:22
Alignment explanation
Indices: 900526--900574 Score: 55
Period size: 26 Copynumber: 2.1 Consensus size: 22
900516 TTATATGAGC
900526 TTACTATACACTAGTTGCTTATGTAA
1 TTACTATACACTAGTTGC---T-TAA
900552 TTACTATACACTAGTTGC-TAA
1 TTACTATACACTAGTTGCTTAA
900573 TT
1 TT
900575 TTGGCAAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
21 5 0.22
26 18 0.78
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (22 bp):
TTACTATACACTAGTTGCTTAA
Found at i:902573 original size:138 final size:138
Alignment explanation
Indices: 902398--902668 Score: 357
Period size: 138 Copynumber: 2.0 Consensus size: 138
902388 ATTTTCTTTC
* * * * * *
902398 TTTTGATTATCAAGAGTTTCCAATTAGAATAAATTATTATAAGTATTATATTGAATAATTAATTC
1 TTTTGAGTATCAAGAGTTTCCAATCAGAATAAATTATTATAAGTACTAGATTGAATAACTAACTC
* * * * *
902463 AATTCA-AACTAATTAATCAAAATATATATAATTGAAAATAAAATT-TGAGTATTCCTTAACTAG
66 AACT-ATAACTAACTAATCAAAACATATATAATCGAAAAT-AAATTCGGAGTATTCCTTAACTAG
902526 CAAACTTGAA
129 CAAACTTGAA
** * * *
902536 TTTTGAGTATCAAGAGTTTCCTGTCAGAATCACTTATTATAAGTACTGGATTGAATAACTAACTC
1 TTTTGAGTATCAAGAGTTTCCAATCAGAATAAATTATTATAAGTACTAGATTGAATAACTAACTC
*
902601 AACTATAACTAACTAATCAAAACATATATAATCGAAAATCAATTCGGAGTATTCCTTAACTAGCA
66 AACTATAACTAACTAATCAAAACATATATAATCGAAAATAAATTCGGAGTATTCCTTAACTAGCA
902666 AAC
131 AAC
902669 CTTAATACTT
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
137 5 0.04
138 109 0.96
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (138 bp):
TTTTGAGTATCAAGAGTTTCCAATCAGAATAAATTATTATAAGTACTAGATTGAATAACTAACTC
AACTATAACTAACTAATCAAAACATATATAATCGAAAATAAATTCGGAGTATTCCTTAACTAGCA
AACTTGAA
Found at i:903622 original size:22 final size:22
Alignment explanation
Indices: 903597--903643 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
903587 TAGGTCATAT
* *
903597 TATAAAT-ATATTGTATTTATCA
1 TATAAATAAT-TTGTATCTAACA
903619 TATAAATAATTTGTATCTAACA
1 TATAAATAATTTGTATCTAACA
903641 TAT
1 TAT
903644 TAAAAAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (22 bp):
TATAAATAATTTGTATCTAACA
Found at i:905902 original size:18 final size:18
Alignment explanation
Indices: 905878--905917 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
905868 GGAATATAGG
905878 ATATATGTATATGTATAT
1 ATATATGTATATGTATAT
* *
905896 GTATATGTATATATATAT
1 ATATATGTATATGTATAT
905914 ATAT
1 ATAT
905918 GCAACTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (18 bp):
ATATATGTATATGTATAT
Found at i:905917 original size:6 final size:6
Alignment explanation
Indices: 905879--905913 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
905869 GAATATAGGA
*
905879 TATATG TATATG TATATG TATATG TATATA TATAT
1 TATATG TATATG TATATG TATATG TATATG TATAT
905914 ATATGCAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (6 bp):
TATATG
Found at i:906704 original size:25 final size:25
Alignment explanation
Indices: 906676--906732 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
906666 TTTAAGTTAC
*
906676 TTTTTTACAAA-ATATTTTTTATACT
1 TTTTTTACAAATATATTTTTTA-AAT
* *
906701 TTTTTTATAAATTTATTTTTTAAAT
1 TTTTTTACAAATATATTTTTTAAAT
906726 TTTTTTA
1 TTTTTTA
906733 TTACGGCTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 19 0.68
26 9 0.32
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTTTTACAAATATATTTTTTAAAT
Found at i:906719 original size:13 final size:12
Alignment explanation
Indices: 906685--906733 Score: 55
Period size: 12 Copynumber: 4.0 Consensus size: 12
906675 CTTTTTTACA
906685 AAATATTTTTTAT
1 AAAT-TTTTTTAT
*
906698 -ACTTTTTTTAT
1 AAATTTTTTTAT
*
906709 AAATTTATTTTTT
1 AAATTT-TTTTAT
906722 AAATTTTTTTAT
1 AAATTTTTTTAT
906734 TACGGCTTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
11 8 0.27
12 11 0.37
13 11 0.37
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (12 bp):
AAATTTTTTTAT
Found at i:907342 original size:16 final size:16
Alignment explanation
Indices: 907307--907351 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
907297 ATCTTTATTG
907307 AATCCCTAAAATCTTCA
1 AATCCCT-AAATCTTCA
* *
907324 AATCCCTAAATTTTGA
1 AATCCCTAAATCTTCA
907340 AATCCCTAAATC
1 AATCCCTAAATC
907352 GTTAGCATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.40, C:0.27, G:0.02, T:0.31
Consensus pattern (16 bp):
AATCCCTAAATCTTCA
Found at i:907435 original size:32 final size:32
Alignment explanation
Indices: 907372--907446 Score: 80
Period size: 32 Copynumber: 2.3 Consensus size: 32
907362 CTAAATATTC
* *
907372 TTGAACTCCCTAAAATTTTTACGAATCAAATCA
1 TTGAA-TCCCTAAAACTATTACGAATCAAATCA
* *
907405 TTGAATCCCTAAAACTATTAGGAA-CGAAATCG
1 TTGAATCCCTAAAACTATTACGAATC-AAATCA
*
907437 TTAAATCCCT
1 TTGAATCCCT
907447 TAGAACCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
31 1 0.03
32 30 0.83
33 5 0.14
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (32 bp):
TTGAATCCCTAAAACTATTACGAATCAAATCA
Found at i:911296 original size:51 final size:51
Alignment explanation
Indices: 911240--911346 Score: 178
Period size: 51 Copynumber: 2.1 Consensus size: 51
911230 CTACATACAG
* *
911240 CAGCAACATTATCCAGTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
1 CAGCAACATTATCCACTCCATCTGACGTTGCAAAATCACCAGCATATTCAT
* *
911291 CAGCAACATTATCCACTCCATCTGACGTTGCAAAATCACTAGCATATTCGT
1 CAGCAACATTATCCACTCCATCTGACGTTGCAAAATCACCAGCATATTCAT
911342 CAGCA
1 CAGCA
911347 GCAACTTCAC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (51 bp):
CAGCAACATTATCCACTCCATCTGACGTTGCAAAATCACCAGCATATTCAT
Found at i:913432 original size:24 final size:27
Alignment explanation
Indices: 913368--913432 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 27
913358 ACATTTTTTT
913368 AAAATGTAAATGAAAACATAAATCAATAA
1 AAAATGTAAA-G-AAACATAAATCAATAA
913397 ACAAATG--AAGAAA-ATAAA-CAA-AA
1 A-AAATGTAAAGAAACATAAATCAATAA
913420 AAAATGTAAAGAA
1 AAAATGTAAAGAA
913433 TAAAAGGTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
22 5 0.15
23 3 0.09
24 8 0.24
25 5 0.15
26 3 0.09
27 1 0.03
28 2 0.06
29 1 0.03
30 5 0.15
ACGTcount: A:0.69, C:0.06, G:0.09, T:0.15
Consensus pattern (27 bp):
AAAATGTAAAGAAACATAAATCAATAA
Found at i:913654 original size:2 final size:2
Alignment explanation
Indices: 913649--913674 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
913639 AATATATACG
913649 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
913675 AATTCGTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:914849 original size:16 final size:16
Alignment explanation
Indices: 914830--914874 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
914820 TTACACTATC
914830 GATTTAGGGATTTCAA
1 GATTTAGGGATTTCAA
** *
914846 GATTTATAGATTTGAA
1 GATTTAGGGATTTCAA
914862 GATTTTAGGGATT
1 GA-TTTAGGGATT
914875 CAATAAAGAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.31, C:0.02, G:0.24, T:0.42
Consensus pattern (16 bp):
GATTTAGGGATTTCAA
Found at i:924827 original size:3 final size:3
Alignment explanation
Indices: 924819--924892 Score: 87
Period size: 3 Copynumber: 24.7 Consensus size: 3
924809 TAAATGGGTA
* * * **
924819 AAT AAT AAT AAT AAT AAT AA- AATT GAT TAG CTT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT
924864 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
924893 AACGGGACTA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.03
3 58 0.95
4 1 0.02
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:926799 original size:129 final size:129
Alignment explanation
Indices: 926524--928707 Score: 3926
Period size: 129 Copynumber: 16.9 Consensus size: 129
926514 AATCTGACGT
* * * * * *
926524 GATCTACTCAACTGTAACTTTAAAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAA-CTT
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATC-T
* * ** *
926588 CAGGGAGATAGGA-TAGT-GTCTTGGATCTGCTCCGCTGTAATCTCAAGGAGATAAGACCTGATA
65 CAGGGAGATAAGATTACTAG-CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATA
926651 C
129 C
* * *
926652 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
* * * *
926717 AGGGAGATAGGATTACTAGCATCAATCTGTTCCGCTGTAATCTCAAGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
* * *
926781 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
* * * *
926846 AGGGAGATAGGATTACTAGCATCAATCTGTTCCGCTGTAATCTCAAGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
* * *
926910 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
* * * *
926975 AGGGAGATAGGATTACTAGCATCAATCTGTTCCGCTGTAATCTCAAGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
* *
927039 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAAT-TCGCTCCACTGTAATCT
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCT-GCTCCACTGTAATCT
* * * *
927103 CAGGGAGATAGGATTACTAGCATCAATCTGTTCCGCTGTAATCTCAAGGAGATAAGACCTGATAC
65 CAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
* * * **
927168 GATCTACCCTACTGTAACTTCAGAGAGATAAGATTCTTTATTTTAATCCACTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
927233 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
927297 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
927362 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
927426 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
927491 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
927555 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
927620 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
927684 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
927749 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
927813 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
927878 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
927942 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
928007 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
928071 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
928136 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
928200 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
928265 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
928329 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
928394 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
928458 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
928523 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
928587 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
928652 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
66 AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
928708 TTACTAGCTT
Statistics
Matches: 2028, Mismatches: 23, Indels: 9
0.98 0.01 0.00
Matches are distributed among these distances:
128 72 0.04
129 1955 0.96
130 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (129 bp):
GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATGTTAATCTGCTCCACTGTAATCTC
AGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
Found at i:928839 original size:129 final size:129
Alignment explanation
Indices: 928675--929074 Score: 719
Period size: 129 Copynumber: 3.1 Consensus size: 129
928665 TACTAGCTTC
* * *
928675 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
1 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
* *
928740 AGAGAGATAAGACCTGTTACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
66 AGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
*
928804 AATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
1 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
928869 AGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
66 AGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
* *
928933 AATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATATC
1 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
*
928998 AGGGAGATAAGACCTGATACGTTCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
66 AGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
929062 AATCCGCTCCACT
1 AATCCGCTCCACT
929075 NNNNNNNNNN
Statistics
Matches: 262, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
129 262 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (129 bp):
AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
AGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
Found at i:929146 original size:44 final size:44
Alignment explanation
Indices: 929097--929181 Score: 143
Period size: 44 Copynumber: 1.9 Consensus size: 44
929087 NNNNTTACTA
* * *
929097 GCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTG
1 GCTTCAATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTG
929141 GCTTCAATCTGCTCCACTGTAACCTCAGAGAGATAAGATCT
1 GCTTCAATCTGCTCCACTGTAACCTCAGAGAGATAAGATCT
929182 AAAATTCGTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (44 bp):
GCTTCAATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTG
Found at i:931308 original size:15 final size:16
Alignment explanation
Indices: 931288--931322 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
931278 CTCCTTTTTC
931288 TTTTCTTTTTCTCTT-
1 TTTTCTTTTTCTCTTA
931303 TTTTCTTTTTCTCTTA
1 TTTTCTTTTTCTCTTA
931319 TTTT
1 TTTT
931323 TGAATTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTCTTTTTCTCTTA
Found at i:931343 original size:26 final size:26
Alignment explanation
Indices: 931309--931374 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
931299 TCTTTTTTCT
931309 TTTTCTCTTATTTTTGAATTTGA-TTGA
1 TTTT-TCTT-TTTTTGAATTTGATTTGA
**
931336 TTTTTCTTTTTTTGCTTTTGATTTTGA
1 TTTTTCTTTTTTTGAATTTGA-TTTGA
931363 TTTTTCTTTTTT
1 TTTTTCTTTTTT
931375 CGTTTCCTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 11 0.31
26 4 0.11
27 20 0.57
ACGTcount: A:0.11, C:0.08, G:0.09, T:0.73
Consensus pattern (26 bp):
TTTTTCTTTTTTTGAATTTGATTTGA
Found at i:935889 original size:3 final size:3
Alignment explanation
Indices: 935881--935917 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
935871 NNNNNNNNNN
935881 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
935918 AACGGGACTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:939910 original size:4 final size:4
Alignment explanation
Indices: 939901--939934 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
939891 ATCCTTTTCT
939901 CATA CATA CATA CATA CATA CATA CATA CATA CA
1 CATA CATA CATA CATA CATA CATA CATA CATA CA
939935 CGCATGCATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:942306 original size:21 final size:21
Alignment explanation
Indices: 942281--942335 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
942271 GCTTTTGTGG
942281 TTGTACTTGTTTTTGATGAAC
1 TTGTACTTGTTTTTGATGAAC
942302 TTGTACTTGTTTTTGATGAAC
1 TTGTACTTGTTTTTGATGAAC
*
942323 TTGAACTTGTTTT
1 TTGTACTTGTTTT
942336 CGATTTTACC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.18, C:0.09, G:0.18, T:0.55
Consensus pattern (21 bp):
TTGTACTTGTTTTTGATGAAC
Found at i:943544 original size:27 final size:27
Alignment explanation
Indices: 943503--943555 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
943493 GGATTTGGTG
*
943503 GTGCCTTCCTAAAAGGTGGCACCAGTT
1 GTGCCTTCCTAAAAGGCGGCACCAGTT
* *
943530 GTGCCTTCTTGAAAGGCGGCACCAGT
1 GTGCCTTCCTAAAAGGCGGCACCAGT
943556 CTGATTAGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (27 bp):
GTGCCTTCCTAAAAGGCGGCACCAGTT
Found at i:945141 original size:13 final size:13
Alignment explanation
Indices: 945123--945147 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
945113 TTGGATCTGT
945123 ACCAAAACAATCC
1 ACCAAAACAATCC
945136 ACCAAAACAATC
1 ACCAAAACAATC
945148 ATGAAACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.36, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCC
Found at i:946054 original size:44 final size:42
Alignment explanation
Indices: 945975--946077 Score: 125
Period size: 44 Copynumber: 2.4 Consensus size: 42
945965 TCCCAGATAG
* *
945975 GGTCTTACACGAAATCATATACGATGCCAATGTCCCAAACAT
1 GGTCTTACACGAAATCATAAACGATGCCAACGTCCCAAACAT
* * **
946017 GGTCTTACACGTAAATCTTAAATCGATGCCAACGTCCCAGATGT
1 GGTCTTACACG-AAATCATAAA-CGATGCCAACGTCCCAAACAT
*
946061 GGTCTTACACAAAATCA
1 GGTCTTACACGAAATCA
946078 CATATCGGAA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 11 0.22
43 13 0.25
44 27 0.53
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGAAATCATAAACGATGCCAACGTCCCAAACAT
Found at i:947523 original size:12 final size:12
Alignment explanation
Indices: 947506--947535 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
947496 TATTATTGTA
947506 TATTATTAATTG
1 TATTATTAATTG
*
947518 TATTATTTATTG
1 TATTATTAATTG
947530 TATTAT
1 TATTAT
947536 ATTTATGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
TATTATTAATTG
Found at i:947538 original size:14 final size:13
Alignment explanation
Indices: 947498--947541 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
947488 TTTAATGATA
947498 TTATTGTATATTAT
1 TTATTGTATA-TAT
*
947512 TAATTGTAT-TAT
1 TTATTGTATATAT
947524 TTATTGTATTATAT
1 TTATTGTA-TATAT
947538 TTAT
1 TTAT
947542 GTGTTTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 10 0.38
13 1 0.04
14 15 0.58
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.64
Consensus pattern (13 bp):
TTATTGTATATAT
Found at i:951463 original size:23 final size:22
Alignment explanation
Indices: 951418--951473 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
951408 AAAGGGTATC
* * *
951418 TACAAATTAAATC-TCTAATAT
1 TACAAATCATATCTTCTAAGAT
951439 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
951462 TACATATCATAT
1 TACAAATCATAT
951474 TTAAGATTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 16 0.55
23 10 0.34
ACGTcount: A:0.45, C:0.16, G:0.02, T:0.38
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:951480 original size:19 final size:19
Alignment explanation
Indices: 951454--951509 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 19
951444 AATCATATCT
951454 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
* *
951473 TTTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
951494 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
951510 CTCGAAGATT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
19 13 0.43
21 17 0.57
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:951491 original size:21 final size:21
Alignment explanation
Indices: 951465--951508 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
951455 CTAAGATTAC
*
951465 ATATCATATTTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
951486 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
951507 AT
1 AT
951509 CCTCGAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:951989 original size:44 final size:44
Alignment explanation
Indices: 951893--952044 Score: 140
Period size: 44 Copynumber: 3.5 Consensus size: 44
951883 TTTAGCCTGA
*
951893 TCCACTGCAACTTCAGGGAGATAAGA-C-TAGATGC-GT--TCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATCATAG--GCTTTAATCTGC
* * *
951934 T-CTCTGCAACTTCAGAGAGATAAGATCCA-AGGTTTTAAT-TCGC
1 TCCACTGCAACTTCAGGGAGATAAGAT-CATAGGCTTTAATCT-GC
* * * *
951977 TTCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATCATAGGCTTTAATCTGC
952021 TCCACTGCAACTTCAGGGAGATAA
1 TCCACTGCAACTTCAGGGAGATAA
952045 AATTTACCAT
Statistics
Matches: 89, Mismatches: 12, Indels: 17
0.75 0.10 0.14
Matches are distributed among these distances:
40 23 0.26
41 2 0.02
42 4 0.04
43 5 0.06
44 54 0.61
45 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGATCATAGGCTTTAATCTGC
Found at i:951989 original size:128 final size:129
Alignment explanation
Indices: 951793--952044 Score: 303
Period size: 128 Copynumber: 2.0 Consensus size: 129
951783 AGATGAATTT
* * * *
951793 GATGCGATCTGCTCTACTGTAATTTCAGAGAGATAAGATCCATCATTCTAATCCACTCCGCTACA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
* * *
951858 ACTTTAGGGAGATAGGATT-T-GTTTATTTAGCCTGATCCACTGCAACTTCAGGGAGATAAGACT
66 ACTTCAGGGAGATAGGATTATCG--GATTTAACCTGATCCACTGCAACTTCAGGGAGATAAGACT
951921 A
129 A
* ** * * * * *
951922 GATGCGTTCTGCTCT-CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATTCGCTTCACTGCA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
* * *
951986 ACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
66 ACTTCAGGGAGATAGGATTATCGGATTTAACCTGATCCACTGCAACTTCAGGGAGATAA
952045 AATTTACCAT
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
128 87 0.84
129 15 0.15
130 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (129 bp):
GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
ACTTCAGGGAGATAGGATTATCGGATTTAACCTGATCCACTGCAACTTCAGGGAGATAAGACTA
Found at i:952615 original size:126 final size:126
Alignment explanation
Indices: 952350--952685 Score: 467
Period size: 126 Copynumber: 2.6 Consensus size: 126
952340 GCTATTTTCC
* * * * * * *
952350 ACCTACTCCACTGCT-ACTCAGGGAGATAGGGTTCACAATCTTCAACCAATTTCGCTGTTGACCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGTTGTCCA
* * *
952414 GGGATATAGGACCTACAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCT
65 GGGAGATAGGA--T----TCTTCAATCTATTCCACTACTACCCAGGGAGATAGAATTCTCAATCT
952479 TCA
124 TCA
* *
952482 ACCTATTCCACTGCTGACCAGGGAGATAAGATTCACAATCTTTAACCTATTCCACTATTGTCCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGTTGTCCAG
*
952547 GGAGATAGGATTCTTTAATCTATTCCACTACTACCCAGGGAGATAGAATTCTCAATCTTCA
66 GGAGATAGGATTCTTCAATCTATTCCACTACTACCCAGGGAGATAGAATTCTCAATCTTCA
* *
952608 ACTTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGTTGTCCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGTTGTCCAG
952673 GGAGATAGGATTC
66 GGAGATAGGATTC
952686 ACAATATTTA
Statistics
Matches: 186, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
126 121 0.65
130 1 0.01
132 62 0.33
133 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (126 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGTTGTCCAG
GGAGATAGGATTCTTCAATCTATTCCACTACTACCCAGGGAGATAGAATTCTCAATCTTCA
Found at i:952725 original size:44 final size:44
Alignment explanation
Indices: 952350--952725 Score: 392
Period size: 44 Copynumber: 8.7 Consensus size: 44
952340 GCTATTTTCC
* *
952350 ACCTACTCCACTGCT-ACTCAGGGAGATAGGGTTCACAATCTTCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCA
* * * * * *
952394 ACCAATTTCGCTGTTGACCAGGGATATAGGA-CCTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC-ACAATCTTCA
* * * *
952438 ATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
* *
952482 ACCTATTCCACTGCTGACCAGGGAGATAAGATTCACAATCTTTA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
** *
952526 ACCTATTCCACTATTGTCCAGGGAGATAGGATT--C--T-TT-A
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
* * * *
952564 ATCTATTCCACTACT-ACCCAGGGAGATAGAATTCTCAATCTTCA
1 ACCTATTCCACTGCTGA-CCAGGGAGATAGGATTCACAATCTTCA
* * *
952608 ACTTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTTA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
* * * *
952652 ACCTATTCCACTGTTGTCCAGGGAGATAGGATTCACAATATTTA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
**
952696 ACCTATAACACTGCTGACCAGGGAGATAGG
1 ACCTATTCCACTGCTGACCAGGGAGATAGG
952726 GTTGGGGTCA
Statistics
Matches: 275, Mismatches: 46, Indels: 22
0.80 0.13 0.06
Matches are distributed among these distances:
38 29 0.11
39 2 0.01
40 2 0.01
42 2 0.01
43 3 0.01
44 233 0.85
45 4 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (44 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
Found at i:952807 original size:88 final size:88
Alignment explanation
Indices: 952739--953214 Score: 655
Period size: 88 Copynumber: 5.4 Consensus size: 88
952729 GGGGTCATCA
* * *
952739 ATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCTA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCA
*
952804 GGGAGGCAAGGCTGGTGTCTACG
66 GGGAGGCAAGGCTGGTGTCTTCG
* * * * * * *
952827 ATTTGCTTCGCTGTCAGTGCTGGAAGGAAAGATCTGCTATTTTAAGTCTGCTCCACTGCAACCCA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCA
*
952892 GGGAGGCAAGGCTGGTGACTTCG
66 GGGAGGCAAGGCTGGTGTCTTCG
* * *
952915 ATCTGCTTCGTTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGCAACCCA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCA
* *
952980 AGGAGGCAAGGCTGGTATCTTCG
66 GGGAGGCAAGGCTGGTGTCTTCG
* * * *
953003 ATCTACTTCACTGTCGGTGCAGGACGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGCAACCCA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCA
*
953068 GGGAGGCAAGACTGGTGTCTTCG
66 GGGAGGCAAGGCTGGTGTCTTCG
* * * **
953091 ACCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCCACTGA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCA
*
953156 GGGAGGCAAGGCTAGTGTCTTCG
66 GGGAGGCAAGGCTGGTGTCTTCG
* * * **
953179 ATCTGGTTCACTGTCAGTATAGGAAGGCAAGATCTG
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
953215 TTATCTTCAC
Statistics
Matches: 340, Mismatches: 48, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 340 1.00
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (88 bp):
ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCA
GGGAGGCAAGGCTGGTGTCTTCG
Found at i:952987 original size:44 final size:44
Alignment explanation
Indices: 952939--953149 Score: 144
Period size: 43 Copynumber: 4.8 Consensus size: 44
952929 CAGTGCAGGA
952939 AGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGCAACCCAAGG
1 AGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGCAACCCAAGG
* * * * * * * ****
952983 AGGCAAG-GCTGGTATCTTC-GATCTACTTCACTGTCGGTGC-AGG
1 AGGCAAGATCTGCTATTTTCAG-CCTGCTCCGCTG-CAACCCAAGG
*
953026 ACGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGCAACCCAGGG
1 A-GGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGCAACCCAAGG
* * * * **** *
953071 AGGCAAGA-CTGGTGTCTTC-GACCTGCTTCGCTGTCGGTGCAAGA
1 AGGCAAGATCTGCTATTTTCAG-CCTGCTCCGCTG-CAACCCAAGG
*
953115 AGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGC
1 AGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGC
953150 CACTGAGGGA
Statistics
Matches: 119, Mismatches: 38, Indels: 20
0.67 0.21 0.11
Matches are distributed among these distances:
42 2 0.02
43 40 0.34
44 37 0.31
45 38 0.32
46 2 0.02
ACGTcount: A:0.19, C:0.28, G:0.27, T:0.26
Consensus pattern (44 bp):
AGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGCAACCCAAGG
Found at i:953163 original size:44 final size:44
Alignment explanation
Indices: 953028--953165 Score: 118
Period size: 44 Copynumber: 3.1 Consensus size: 44
953018 GGTGCAGGAC
* * **
953028 GGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGCAACCCAGGGA
1 GGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCCACTGAGGGA
* * * * * * ** * *
953072 GGCAAGA-CTGGT-GTCTTCGACCTGCTTCGCTGTCGGTGCAAGAA
1 GGCAAGATCTGCTATTTTTAG-CCTGCTCCGCTGCCACTG-AGGGA
953116 GGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCCACTGAGGGA
1 GGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCCACTGAGGGA
953160 GGCAAG
1 GGCAAG
953166 GCTAGTGTCT
Statistics
Matches: 66, Mismatches: 24, Indels: 8
0.67 0.24 0.08
Matches are distributed among these distances:
42 3 0.05
43 15 0.23
44 26 0.39
45 18 0.27
46 4 0.06
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (44 bp):
GGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCCACTGAGGGA
Found at i:959846 original size:19 final size:21
Alignment explanation
Indices: 959808--959846 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
959798 NNNNNNNNAA
*
959808 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
959829 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
959847 ACAGTAAGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:960028 original size:22 final size:21
Alignment explanation
Indices: 959993--960069 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 21
959983 GGCGGGTATC
* *
959993 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
960014 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
*
960037 TACATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
960056 TGCATATCATATCT
1 TACAAATCATATCT
960070 AAGATTGCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
19 18 0.38
21 4 0.08
22 15 0.31
23 11 0.23
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:960036 original size:23 final size:22
Alignment explanation
Indices: 959993--960050 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
959983 GGCGGGTATC
* *
959993 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
960014 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
960037 TACATATCATATCT
1 TACAAATCATATCT
960051 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:960053 original size:19 final size:19
Alignment explanation
Indices: 960006--960082 Score: 91
Period size: 19 Copynumber: 3.8 Consensus size: 19
959996 AAATTAAATC
*
960006 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
960026 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
960048 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
960067 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
960083 CTCGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
22 7 0.13
23 11 0.21
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:960822 original size:29 final size:29
Alignment explanation
Indices: 960780--960852 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
960770 CTACCCACGA
960780 AATACCATTTTGGTAAATAATGTGAGTGG
1 AATACCATTTTGGTAAATAATGTGAGTGG
960809 AATACCATTTTGGTAAATAATGTGAGTGG
1 AATACCATTTTGGTAAATAATGTGAGTGG
960838 AATACCATTTTGGTA
1 AATACCATTTTGGTA
960853 TTTTTCTTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (29 bp):
AATACCATTTTGGTAAATAATGTGAGTGG
Found at i:960966 original size:7 final size:7
Alignment explanation
Indices: 960956--960980 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
960946 TATATTTATT
960956 TTTTAAA
1 TTTTAAA
960963 TTTTAAA
1 TTTTAAA
960970 TTTTAAA
1 TTTTAAA
960977 TTTT
1 TTTT
960981 GGATTTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTTAAA
Done.