Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold686

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10142
ACGTcount: A:0.04, C:0.04, G:0.03, T:0.06

Warning! 8361 characters in sequence are not A, C, G, or T


Found at i:993 original size:11 final size:10

Alignment explanation


    Indices: 977--1024  Score: 60
    Period size: 10  Copynumber: 4.7  Consensus size: 10

        967 CAATTTTTTC

                   *  
        977 TTTTTTTCAA
          1 TTTTTTTTAA

                    * 
        987 TTTTTTTTGA
          1 TTTTTTTTAA

                    * 
        997 TTTTTTTTGA
          1 TTTTTTTTAA

                       
       1007 TTTTTTTTCAA
          1 TTTTTTTT-AA

                   
       1018 TTTTTTT
          1 TTTTTTT

       1025 CACGAGTCTA


Statistics
Matches: 34,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
  10   26  0.76
  11    8  0.24

ACGTcount: A:0.12, C:0.04, G:0.04, T:0.79


Consensus pattern (10 bp):   
TTTTTTTTAA

Done.