Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3127

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 476

Length: 794
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22


Found at i:39 original size:15 final size:15

Alignment explanation


    Indices: 19--56  Score: 76
    Period size: 15  Copynumber: 2.5  Consensus size: 15

          9 TACTGGTATT

                           
         19 GAGGCAGTATAGATC
          1 GAGGCAGTATAGATC

                           
         34 GAGGCAGTATAGATC
          1 GAGGCAGTATAGATC

                    
         49 GAGGCAGT
          1 GAGGCAGT

         57 TCATACCTAC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.32, C:0.13, G:0.37, T:0.18


Consensus pattern (15 bp):   
GAGGCAGTATAGATC
Done.