Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2735

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 517

Length: 863
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.22

Warning! 33 characters in sequence are not A, C, G, or T


Found at i:651 original size:18 final size:18

Alignment explanation


    Indices: 630--669  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        620 GATTGAGAGT

                  *  *      * 
        630 GAAAAGGAATGTGAAACA
          1 GAAAAGAAAAGTGAAAAA

                              
        648 GAAAAGAAAAGTGAAAAA
          1 GAAAAGAAAAGTGAAAAA

                
        666 GAAA
          1 GAAA

        670 TTGAAGAAAG


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.65, C:0.03, G:0.25, T:0.07


Consensus pattern (18 bp):   
GAAAAGAAAAGTGAAAAA
Done.